AlfalfaGEDB | Msa0893070

M. sativa cultivar zhongmu-4 / Msa0893070

KEGG: K04733|K13420
GO: -
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0893070	RHN72119.1	28.676	272	184	4	130	392	28	298	4.05e-17	99.0
Msa0893070	RHN72119.1	29.870	231	144	3	162	391	13	226	3.42e-15	92.8
Msa0893070	RHN72119.1	31.429	350	219	5	53	391	30	369	7.70e-29	136
Msa0893070	RHN72119.1	81.913	763	136	1	2	764	76	836	0.0	1238

Showing 1 to 4 of 4 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0893070	sp\|C0LGP4\|Y3475_ARATH	37.272	821	427	15	2	761	205	998	1.64e-153	476
Msa0893070	sp\|C0LGP4\|Y3475_ARATH	30.749	374	210	5	67	391	77	450	6.61e-31	134
Msa0893070	sp\|C0LGP4\|Y3475_ARATH	31.557	244	166	1	157	399	65	308	6.04e-23	108
Msa0893070	sp\|C0LGP4\|Y3475_ARATH	32.639	144	97	0	248	391	60	203	5.72e-11	70.1

Showing 1 to 4 of 4 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0893070	A0A396J279	28.676	272	184	4	130	392	28	298	1.93e-17	99.0
Msa0893070	A0A396J279	29.870	231	144	3	162	391	13	226	1.63e-15	92.8
Msa0893070	A0A396J279	31.429	350	219	5	53	391	30	369	3.68e-29	136
Msa0893070	A0A396J279	81.913	763	136	1	2	764	76	836	0.0	1238

Showing 1 to 4 of 4 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0893070	Msa1006250	0.809835	1.555090e-50	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0893070	MtrunA17_Chr2g0284191	81.913	763	136	1	2	764	76	836	0.0	1238
Msa0893070	MtrunA17_Chr2g0284191	31.429	350	219	5	53	391	30	369	7.08e-33	136
Msa0893070	MtrunA17_Chr2g0284191	28.676	272	184	4	130	392	28	298	3.72e-21	99.0
Msa0893070	MtrunA17_Chr2g0284191	29.870	231	144	3	162	391	13	226	3.15e-19	92.8
Msa0893070	MtrunA17_Chr2g0284191	29.596	223	148	3	1	222	250	464	1.77e-13	74.3
Msa0893070	MtrunA17_Chr0c09g0493531	80.366	764	150	0	1	764	82	845	0.0	1217
Msa0893070	MtrunA17_Chr0c09g0493531	32.741	394	238	7	21	401	5	384	4.64e-36	146
Msa0893070	MtrunA17_Chr2g0284151	79.450	764	144	2	1	764	40	790	0.0	1203
Msa0893070	MtrunA17_Chr2g0284151	31.274	259	140	4	172	392	5	263	3.80e-21	99.0
Msa0893070	MtrunA17_Chr2g0284121	75.000	772	182	5	1	762	441	1211	0.0	1145

Showing 1 to 10 of 1,212 entries

Previous1 2 3 4 5…122Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0893070	AT3G47570.1	37.272	821	427	15	2	761	205	998	1.67e-154	476
Msa0893070	AT3G47570.1	30.749	374	210	5	67	391	77	450	6.72e-32	134
Msa0893070	AT3G47570.1	31.557	244	166	1	157	399	65	308	6.14e-24	108
Msa0893070	AT3G47570.1	32.639	144	97	0	248	391	60	203	5.82e-12	70.1
Msa0893070	AT5G20480.1	36.594	828	425	17	2	766	212	1002	2.39e-144	450
Msa0893070	AT5G20480.1	30.179	391	208	7	65	397	82	465	5.00e-34	140
Msa0893070	AT5G20480.1	34.632	231	149	2	170	398	85	315	1.37e-26	117
Msa0893070	AT5G20480.1	29.730	185	130	0	206	390	73	257	9.15e-18	89.0
Msa0893070	AT5G20480.1	30.942	223	120	4	1	222	411	600	3.87e-17	86.7
Msa0893070	AT5G20480.1	32.414	145	98	0	248	392	67	211	8.91e-15	79.3

Showing 1 to 10 of 952 entries

Previous1 2 3 4 5…96Next

Find 152 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGATACTTTCAAGAT+AGG	0.351343	6_1:+75431940	None:intergenic
AAAGGAGATGTGTACAGCTA+TGG	0.460020	6_1:-75430598	Msa0893070:CDS
AAATGACGAAGGTATCTCAA+AGG	0.632808	6_1:+75432261	None:intergenic
AAGATAGGCAAGTGACTCTA+AGG	0.332414	6_1:+75431955	None:intergenic
AAGATTTCCAATTAAAGCAT+TGG	0.473733	6_1:+75432201	None:intergenic
AAGGAGATGTGTACAGCTAT+GGG	0.538595	6_1:-75430597	Msa0893070:CDS
AAGGGAATCATTTCAGTTAA+AGG	0.217002	6_1:-75430616	Msa0893070:CDS
AAGGGTTAAGCTTGAAGACT+TGG	0.411969	6_1:-75430519	Msa0893070:CDS
AATTGTTGTGTTAGGCATTT+TGG	0.237486	6_1:-75431738	Msa0893070:CDS
ACAATTTAGGTTCACAACAC+TGG	0.496400	6_1:-75430453	Msa0893070:CDS

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTAAATCTCCTAAAGAATC+AGG	+	chr6_1:75430409-75430428	None:intergenic	30.0%
CTCGAATTTCTCAACATAAA+TGG	-	chr6_1:75430433-75430452	Msa0893070:CDS	30.0%
TTCTACAGATAAGTTTCCAA+TGG	+	chr6_1:75430581-75430600	None:intergenic	30.0%
GCAGATTCTTGTTCAATTAA+TGG	-	chr6_1:75430610-75430629	Msa0893070:CDS	30.0%
TGATCCACTCAAATCATTAT+CGG	+	chr6_1:75430689-75430708	None:intergenic	30.0%
TTATCCACCAATGCTTTAAT+TGG	-	chr6_1:75430970-75430989	Msa0893070:intron	30.0%
CTCAATTCACTTATCTCAAA+TGG	+	chr6_1:75431003-75431022	None:intergenic	30.0%
CATACAATATGTTACAAGGA+AGG	-	chr6_1:75431262-75431281	Msa0893070:CDS	30.0%
TCGAATGCATAAAAGGAAAA+AGG	-	chr6_1:75431482-75431501	Msa0893070:CDS	30.0%
TCATAATAGGAAATCCTTCT+TGG	+	chr6_1:75431549-75431568	None:intergenic	30.0%

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	75430118	75433082	75430118	ID=Msa0893070;Name=Msa0893070
chr6_1	mRNA	75430118	75433082	75430118	ID=Msa0893070-mRNA-1;Parent=Msa0893070;Name=Msa0893070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.5\|1\|1\|1\|2\|209\|767
chr6_1	exon	75430118	75430649	75430118	ID=Msa0893070-mRNA-1:exon:12723;Parent=Msa0893070-mRNA-1
chr6_1	exon	75431102	75433082	75431102	ID=Msa0893070-mRNA-1:exon:12722;Parent=Msa0893070-mRNA-1
chr6_1	CDS	75431102	75433082	75431102	ID=Msa0893070-mRNA-1:cds;Parent=Msa0893070-mRNA-1
chr6_1	CDS	75430327	75430649	75430327	ID=Msa0893070-mRNA-1:cds;Parent=Msa0893070-mRNA-1
chr6_1	three_prime_UTR	75430118	75430326	75430118	ID=Msa0893070-mRNA-1:three_prime_utr;Parent=Msa0893070-mRNA-1

Gene Sequence

>Msa0893070

ATGGAGATTGGCCATCTCAGTCAACTTCAGCTTCTAGCAATAGGAAATAACAGCTTGAGTGGGCCTATTCCTTCAAAACTCTTCAACATTTCAACATTGAATAATTTGCATCTTGAACTAAACTCTCTCTCAGGCATGCTTCCATCAAATTTGGGATTTGGACTTCATAACCTACAAGAACTAGTCGTGTTTGGAAACAAACTTGTTGGAAAAATTCCAAATAGTATATCCAATGCTTCAAATCTAGTTCGAGTTGATTTTAATTTTAATGAATTTAGTGGAATTATGCCTGATTCTTTAGGAGATTTAAGACTACTCGAATTTCTCAACATAAATGGCAATAATTTGACATTAATTGATGATTCTCAAGAAATAAGCTTCCTTACTTCACTTACAAGTTGCAGATATCTGAAATATCTTGAAGTATCAGAGAATAGTTTACTATCAAAACTTCCCAAGTCCATTGGAAACTTATCTGTAGAACACTTTCTCGCAGATTCTTGTTCAATTAATGGAAACATTCCACTAGAAATCGGAAACATGAGCAACCTGATTCAATTATCTCTAACCGATAATGATTTGAGTGGATCAATCCCTGGTACAATTAAAGGGTTGCATAAACTTCAAACGTTGAATCTTAGCTACAACGGACTGCAAGGATCCATCATTGATGAGCTTTGTGAAATTAGGAGTTTGAGTGAGTTGTATATAAGAAGCAATAAGCTTTTTGGAGCGTTACCAACATGTTTGGGAAATATGACTTCTCTTAGAAAGTTCGACATAGGATCTAATAGGTTAACCTTTGAGATACCTTCGTCATTTTGGAGTCTCAAAGATATCTTAGAGGTAAACTTATCCACCAATGCTTTAATTGGAAATCTTCCATTTGAGATAAGTGAATTGAGAGCAATTGTACTATTAGATCTGTCAGAAAATCAAATTTCAAGCAACATTCCTGAAACCATAGGTTCATTAACAACTCTGCAGAATCTCTCCTTAGCAAATAACAAATTGTATGGGAAAATTCCCACAACACTTGGTGATTTGGTAAACTTGGGCTTCTTGGACTTGTCCCATAATCTTCTTACTGGTGTCATTCCAAAATCCTTAGAGTCACTTGCCTATCTTGAAAGTATCAATTTTTCATACAATATGTTACAAGGAAGGATTCCTGATGGTGGCCGATTCAAAAATTTCACAGCTCAATCTTTCATGTATAATGAAGCACTTTGTGGCAGTCCTCGATTACAAGTACCTCCATGTGATCAACATAAGGAAAAGTCAAAGACAAAGATTCTATTAATCATATTCATATCACTCGTAATTGTTGTGTTAGGCATTTTGGTTGTTGCAAGAATAATACTTCGAATGCATAAAAGGAAAAAGGTTGAAAGTCCACTTGAAAGGGGTTTATCCACTATAGGAGTTCCAAGAAGGATTTCCTATTATGAACTCGTGCAAGCAACTAATGGATTCAGTGAGACTAATTTACTTGGAAGGGGTGGTTTTGGATCAGTATATAAAGGAATGCTTTCTAGTGGGAAGATGATAGCAATTAAAGTACTTGACTTAACAATGGAAGCTACTTCAAGAAGCTTTGATGCAGAATGCAATGCAATGCGCAACCTTCGACATAGAAATCTCGTTCAAATCATCAGTAGTTGTTCAAATCCTGATTTCAAATCTCTAGTGATGGAGTTTATGTCAAATGGAAATGTGGAAAAATGGTTGTACTCTGATAACTATTTTTTGGATTTCTTGCAAAGGTTGAACATAATGATAGATGTGGCATCTGCAATGGAGTATCTCCATCATGGCTCTTCAATACCAGTGGTTCATTGTGACTTGAAGCCTAGTAATGTGTTACTGGATGAAGATATGATTGCACATGTGAGTGATTTTGGCATTTCCAAGCTCTTGGATGAAGGACATTCTGAAACTCATACAGAAACTTTAGCTACTCTTGGCTATGTTGCACCAGAGTATGGATCTAAGGGAATCATTTCAGTTAAAGGAGATGTGTACAGCTATGGGATAATGCTGATGGAAATGTTCACCGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGGGTTAAGCTTGAAGACTTGGATTAGTGAATCAATGGCCAATTCCAGTATGGAAGCTGTGGATTACAATTTAGGTTCACAACACTGGAAAGAAATTCATGATGTATTAGCTTTAGCATTGAGATGTTGTGAAGATTCACCGGAGGCTCGGATTAATATGACAGATGTAACTACATCGTTAATCAAGATCAAGACCTCATTATCATCGGGTTAA

Protein sequence

>Msa0893070

MEIGHLSQLQLLAIGNNSLSGPIPSKLFNISTLNNLHLELNSLSGMLPSNLGFGLHNLQELVVFGNKLVGKIPNSISNASNLVRVDFNFNEFSGIMPDSLGDLRLLEFLNINGNNLTLIDDSQEISFLTSLTSCRYLKYLEVSENSLLSKLPKSIGNLSVEHFLADSCSINGNIPLEIGNMSNLIQLSLTDNDLSGSIPGTIKGLHKLQTLNLSYNGLQGSIIDELCEIRSLSELYIRSNKLFGALPTCLGNMTSLRKFDIGSNRLTFEIPSSFWSLKDILEVNLSTNALIGNLPFEISELRAIVLLDLSENQISSNIPETIGSLTTLQNLSLANNKLYGKIPTTLGDLVNLGFLDLSHNLLTGVIPKSLESLAYLESINFSYNMLQGRIPDGGRFKNFTAQSFMYNEALCGSPRLQVPPCDQHKEKSKTKILLIIFISLVIVVLGILVVARIILRMHKRKKVESPLERGLSTIGVPRRISYYELVQATNGFSETNLLGRGGFGSVYKGMLSSGKMIAIKVLDLTMEATSRSFDAECNAMRNLRHRNLVQIISSCSNPDFKSLVMEFMSNGNVEKWLYSDNYFLDFLQRLNIMIDVASAMEYLHHGSSIPVVHCDLKPSNVLLDEDMIAHVSDFGISKLLDEGHSETHTETLATLGYVAPEYGSKGIISVKGDVYSYGIMLMEMFTGKKPTNEMFSEGLSLKTWISESMANSSMEAVDYNLGSQHWKEIHDVLALALRCCEDSPEARINMTDVTTSLIKIKTSLSSG*