AlfalfaGEDB | Msa1006250

M. sativa cultivar zhongmu-4 / Msa1006250

KEGG: K04733
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006250	XP_024626063.2	89.109	101	11	0	1	101	238	338	8.27e-56	189

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006250	sp\|Q9LP24\|Y1571_ARATH	60.000	100	40	0	2	101	926	1025	1.87e-35	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006250	A0A396GST9	89.109	101	11	0	1	101	395	495	1.36e-55	189

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021460	Msa1006250	0.850311	1.843046e-60	-8.615850e-47
Msa0023610	Msa1006250	0.811727	6.058491e-51	-8.615850e-47
Msa0033340	Msa1006250	0.815057	1.123654e-51	-8.615850e-47
Msa0055690	Msa1006250	0.822844	1.905778e-53	-8.615850e-47
Msa0071340	Msa1006250	0.812046	5.161922e-51	-8.615850e-47
Msa0109970	Msa1006250	0.821279	4.392846e-53	-8.615850e-47
Msa0109990	Msa1006250	0.833662	4.687660e-56	-8.615850e-47
Msa0142230	Msa1006250	0.835239	1.883973e-56	-8.615850e-47
Msa0153200	Msa1006250	0.834539	2.826372e-56	-8.615850e-47
Msa0156170	Msa1006250	0.820788	5.700207e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006250	MtrunA17_Chr7g0217101	89.109	101	11	1	101	395	495	2.61e-59	189
Msa1006250	MtrunA17_Chr7g0217061	87.129	101	13	1	101	563	663	3.28e-58	191
Msa1006250	MtrunA17_Chr7g0217081	90.099	101	10	1	101	640	740	4.25e-58	191
Msa1006250	MtrunA17_Chr7g0215641	82.178	101	18	1	101	547	647	4.44e-56	185
Msa1006250	MtrunA17_Chr7g0215011	84.158	101	16	1	101	560	660	2.38e-55	183
Msa1006250	MtrunA17_Chr7g0215631	84.158	101	16	1	101	522	622	2.93e-55	182
Msa1006250	MtrunA17_Chr7g0215681	81.188	101	19	1	101	560	660	5.92e-55	182
Msa1006250	MtrunA17_Chr7g0215061	81.188	101	19	1	101	601	701	9.21e-55	182
Msa1006250	MtrunA17_Chr7g0215651	81.188	101	19	1	101	513	613	4.54e-54	179
Msa1006250	MtrunA17_Chr8g0357191	80.198	101	20	1	101	769	869	6.13e-54	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006250	AT4G08850.2	58.654	104	43	0	2	105	850	953	6.84e-38	135
Msa1006250	AT1G35710.1	60.000	100	40	0	2	101	926	1025	1.90e-36	130
Msa1006250	AT4G08850.1	59.000	100	41	0	2	101	850	949	2.64e-36	130
Msa1006250	AT1G31420.2	50.495	101	47	2	2	101	376	474	4.73e-29	109
Msa1006250	AT1G31420.1	49.505	101	49	2	2	101	376	475	3.17e-28	107
Msa1006250	AT1G31420.3	49.505	101	49	2	2	101	376	475	3.17e-28	107
Msa1006250	AT5G62230.2	46.535	101	53	1	2	101	670	770	3.22e-28	107
Msa1006250	AT5G62230.1	46.535	101	53	1	2	101	718	818	3.23e-28	107
Msa1006250	AT5G55830.1	47.115	104	52	2	1	101	435	538	1.06e-27	105
Msa1006250	AT2G35620.3	48.515	101	49	2	2	101	374	472	1.10e-27	105

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Find 19 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTAATGTTGTGAA+AGG	0.511059	7_1:+4968251	Msa1006250:CDS
AAAGGCTTAATGTTGTGAAA+GGG	0.439162	7_1:+4968252	Msa1006250:CDS
AAGGCTTAATGTTGTGAAAG+GGG	0.548268	7_1:+4968253	Msa1006250:CDS
AAGTCTAGTGTTTCTGACTT+TGG	0.477678	7_1:+4968371	Msa1006250:CDS
ACAATTGGATATATAGCTCC+AGG	0.539728	7_1:+4968446	Msa1006250:CDS
ACATCTCTATGCACTATTGG+AGG	0.532094	7_1:-4968314	None:intergenic
ACTATAGTTGTTGGAACAAT+TGG	0.327954	7_1:+4968431	Msa1006250:CDS
ATATCTTGCTAAACTACGAG+TGG	0.586586	7_1:+4968348	Msa1006250:CDS
ATCTACGAGTACATGGAGAA+AGG	0.585673	7_1:+4968173	Msa1006250:CDS
ATCTCTATGCACTATTGGAG+GGG	0.590619	7_1:-4968312	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCTTAATGTTGTGAA+AGG	+	chr7_1:4968251-4968270	Msa1006250:CDS	30.0%
AAAGGCTTAATGTTGTGAAA+GGG	+	chr7_1:4968252-4968271	Msa1006250:CDS	30.0%
TCAAATCGAACTATAGTTGT+TGG	+	chr7_1:4968422-4968441	Msa1006250:CDS	30.0%
ACTATAGTTGTTGGAACAAT+TGG	+	chr7_1:4968431-4968450	Msa1006250:CDS	30.0%
AGACCAATGAAAAATTTACC+TGG	-	chr7_1:4968467-4968486	None:intergenic	30.0%
TTGAAGCCGTTGAATTCAAT+TGG	+	chr7_1:4968225-4968244	Msa1006250:CDS	35.0%
AAGGCTTAATGTTGTGAAAG+GGG	+	chr7_1:4968253-4968272	Msa1006250:CDS	35.0%
GATACATCTCTATGCACTAT+TGG	-	chr7_1:4968320-4968339	None:intergenic	35.0%
ATATCTTGCTAAACTACGAG+TGG	+	chr7_1:4968348-4968367	Msa1006250:CDS	35.0%
GATTTGATGAATCCGATTCA+AGG	-	chr7_1:4968409-4968428	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	4968164	4968490	4968164	ID=Msa1006250;Name=Msa1006250
chr7_1	mRNA	4968164	4968490	4968164	ID=Msa1006250-mRNA-1;Parent=Msa1006250;Name=Msa1006250-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|108
chr7_1	exon	4968164	4968490	4968164	ID=Msa1006250-mRNA-1:exon:1680;Parent=Msa1006250-mRNA-1
chr7_1	CDS	4968164	4968490	4968164	ID=Msa1006250-mRNA-1:cds;Parent=Msa1006250-mRNA-1

Gene Sequence	>Msa1006250 ATGTTTTTGATCTACGAGTACATGGAGAAAGGTAGCTTGTTCTCTGTCTTGTATGAAGAAGTTGAAGCCGTTGAATTCAATTGGAGAAAAAGGCTTAATGTTGTGAAAGGGGTTGCATTTGGTCTATCATATCTTCACCATGATTGCACCCCTCCAATAGTGCATAGAGATGTATCTACTAGCAATATCTTGCTAAACTACGAGTGGAAGTCTAGTGTTTCTGACTTTGGCACATCTCGACTCCTTGAATCGGATTCATCAAATCGAACTATAGTTGTTGGAACAATTGGATATATAGCTCCAGGTAAATTTTTCATTGGTCTTTAG
Protein sequence	>Msa1006250 MFLIYEYMEKGSLFSVLYEEVEAVEFNWRKRLNVVKGVAFGLSYLHHDCTPPIVHRDVSTSNILLNYEWKSSVSDFGTSRLLESDSSNRTIVVGTIGYIAPGKFFIGL*