Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893720 | XP_013452417.1 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893720 | sp|Q9FHM7|HIR4_ARATH | 81.849 | 292 | 52 | 1 | 1 | 291 | 1 | 292 | 0.0 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893720 | I3SG23 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0893720 | Msa0920480 | 0.818604 | 1.797400e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893720 | MtrunA17_Chr6g0476481 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 602 |
| Msa0893720 | MtrunA17_Chr6g0452801 | 57.092 | 282 | 121 | 0 | 7 | 288 | 5 | 286 | 1.32e-114 | 332 |
| Msa0893720 | MtrunA17_Chr4g0060101 | 58.803 | 284 | 115 | 1 | 1 | 284 | 1 | 282 | 2.13e-114 | 331 |
| Msa0893720 | MtrunA17_Chr8g0362631 | 55.124 | 283 | 127 | 0 | 5 | 287 | 3 | 285 | 1.28e-113 | 329 |
| Msa0893720 | MtrunA17_Chr4g0060111 | 56.446 | 287 | 123 | 1 | 1 | 287 | 1 | 285 | 1.36e-112 | 327 |
| Msa0893720 | MtrunA17_Chr4g0060151 | 56.446 | 287 | 123 | 1 | 1 | 287 | 1 | 285 | 1.36e-112 | 327 |
| Msa0893720 | MtrunA17_Chr4g0060091 | 56.690 | 284 | 121 | 1 | 1 | 284 | 6 | 287 | 1.40e-110 | 322 |
| Msa0893720 | MtrunA17_Chr4g0060171 | 53.584 | 293 | 125 | 2 | 1 | 284 | 1 | 291 | 9.91e-109 | 317 |
| Msa0893720 | MtrunA17_Chr6g0476411 | 96.491 | 57 | 2 | 0 | 236 | 292 | 1 | 57 | 6.62e-35 | 120 |
| Msa0893720 | MtrunA17_Chr6g0476421 | 93.220 | 59 | 3 | 1 | 150 | 207 | 1 | 59 | 1.80e-28 | 103 |
| Msa0893720 | MtrunA17_Chr6g0476371 | 83.784 | 37 | 6 | 0 | 137 | 173 | 2 | 38 | 2.45e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893720 | AT5G51570.1 | 81.849 | 292 | 52 | 1 | 1 | 291 | 1 | 292 | 0.0 | 504 |
| Msa0893720 | AT3G01290.1 | 57.692 | 286 | 119 | 1 | 1 | 286 | 1 | 284 | 1.31e-121 | 350 |
| Msa0893720 | AT5G62740.1 | 55.903 | 288 | 125 | 1 | 1 | 288 | 1 | 286 | 5.40e-116 | 335 |
| Msa0893720 | AT1G69840.1 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0893720 | AT1G69840.2 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0893720 | AT1G69840.5 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0893720 | AT1G69840.7 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0893720 | AT1G69840.4 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0893720 | AT1G69840.6 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0893720 | AT1G69840.3 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
Find 69 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATATAACACATTCATTT+TGG | 0.199717 | 6_1:-78521726 | None:intergenic |
| CAAGGTGCTTATTGTTAAAA+AGG | 0.209960 | 6_1:+78526821 | Msa0893720:CDS |
| CAGCAAAAGGGTTAAAGATT+TGG | 0.250570 | 6_1:-78522077 | None:intergenic |
| AAAGAAGAATACCTTAGTTT+TGG | 0.287824 | 6_1:-78522160 | None:intergenic |
| AGCTCATCCAAATTCATCTT+TGG | 0.290409 | 6_1:-78524461 | None:intergenic |
| CCGCTATGTTTAATTAAGTT+TGG | 0.304299 | 6_1:-78521900 | None:intergenic |
| TATTGTTCCAAAGATGAATT+TGG | 0.304736 | 6_1:+78524454 | Msa0893720:CDS |
| TTTGCTGGTGAATGTCTTGC+TGG | 0.306419 | 6_1:+78522093 | Msa0893720:CDS |
| AACATCAAGAGAAGCAATTC+TGG | 0.314593 | 6_1:-78522127 | None:intergenic |
| CCTGGCCATGTTAGGGATAT+TGG | 0.321495 | 6_1:+78527068 | Msa0893720:CDS |
| CAATTTATAATGGTAATATA+TGG | 0.333180 | 6_1:+78527310 | Msa0893720:three_prime_UTR |
| TATCAGGTGATGGGAGAATA+TGG | 0.348103 | 6_1:+78525630 | Msa0893720:intron |
| CTCATGGACCTGGCCATGTT+AGG | 0.353338 | 6_1:+78527060 | Msa0893720:CDS |
| AATGAATGTGTTATATTCAC+TGG | 0.393024 | 6_1:+78521730 | Msa0893720:five_prime_UTR |
| TATAATATATCAATTTATAA+TGG | 0.404544 | 6_1:+78527300 | Msa0893720:three_prime_UTR |
| GATGAGCTGTTTGAGCAAAA+AGG | 0.421318 | 6_1:+78524476 | Msa0893720:CDS |
| TTTGAAGTTGTAAATTAAGA+TGG | 0.428369 | 6_1:+78527382 | Msa0893720:three_prime_UTR |
| AAGTTCTTCCATGACACCTT+TGG | 0.440981 | 6_1:-78524507 | None:intergenic |
| GCTCTCCGCACAGAAGGATC+AGG | 0.443521 | 6_1:-78525690 | None:intergenic |
| GCAAGACATTCACCAGCAAA+AGG | 0.445848 | 6_1:-78522090 | None:intergenic |
| GATATGTCATTTGTTTATGT+TGG | 0.454778 | 6_1:+78527332 | Msa0893720:three_prime_UTR |
| TCATGGACCTGGCCATGTTA+GGG | 0.460907 | 6_1:+78527061 | Msa0893720:CDS |
| CAATTCTCTAACAAGGTAGA+AGG | 0.463722 | 6_1:+78526936 | Msa0893720:CDS |
| TATTCTTTGAATTGTTTCCA+AGG | 0.488072 | 6_1:-78527022 | None:intergenic |
| AAAGGTGTCATGGAAGAACT+TGG | 0.494843 | 6_1:+78524509 | Msa0893720:CDS |
| CACGACTTGCATGAAAGACT+TGG | 0.510583 | 6_1:-78521757 | None:intergenic |
| CGTAGGAATTGTTGAACAGT+GGG | 0.512259 | 6_1:+78522023 | Msa0893720:CDS |
| AAACCCGCAGGAACAGATCC+AGG | 0.515245 | 6_1:+78524074 | Msa0893720:CDS |
| TTCATTGCTCTCCGCACAGA+AGG | 0.519425 | 6_1:-78525696 | None:intergenic |
| TTTGACACAATCAGAGACCT+TGG | 0.519786 | 6_1:+78527005 | Msa0893720:CDS |
| AACTTCAGCAAAGGAAGTGA+TGG | 0.519872 | 6_1:+78526959 | Msa0893720:CDS |
| TAAAATTGAAACCAAAACTA+AGG | 0.521802 | 6_1:+78522149 | Msa0893720:CDS |
| CCAATATCCCTAACATGGCC+AGG | 0.522093 | 6_1:-78527068 | None:intergenic |
| TCAAATTCGCAATGGAATGA+TGG | 0.522823 | 6_1:+78527094 | Msa0893720:CDS |
| AAGCCTGGATCTGTTCCTGC+GGG | 0.541976 | 6_1:-78524077 | None:intergenic |
| TGAGGTTGCCAAAGGTGTCA+TGG | 0.542605 | 6_1:+78524499 | Msa0893720:CDS |
| TTTCAAAGAGTTGCTCAACC+TGG | 0.547043 | 6_1:+78522051 | Msa0893720:CDS |
| AATATCATTTATCAGGTGAT+GGG | 0.558275 | 6_1:+78525621 | Msa0893720:intron |
| GCAATGAATGAGATCAATGC+AGG | 0.559095 | 6_1:+78525711 | Msa0893720:CDS |
| TTATGAGTTGCAAAACCCGC+AGG | 0.561790 | 6_1:+78524062 | Msa0893720:CDS |
| CAAGACATTCACCAGCAAAA+GGG | 0.568721 | 6_1:-78522089 | None:intergenic |
| CTCATAACATTACAATGTCA+AGG | 0.570327 | 6_1:-78527445 | None:intergenic |
| AACACGTTCTGTTTGTTCTG+TGG | 0.571185 | 6_1:+78521982 | Msa0893720:CDS |
| GGTGTGATGTGAGTGTATTG+TGG | 0.578576 | 6_1:-78521792 | None:intergenic |
| GATTTAATTTCACAGCTCAA+AGG | 0.589650 | 6_1:+78526763 | Msa0893720:intron |
| CATCTTTGGAACAATAGCAC+GGG | 0.597133 | 6_1:-78524447 | None:intergenic |
| TCATCTTTGGAACAATAGCA+CGG | 0.599186 | 6_1:-78524448 | None:intergenic |
| GGGTTAAAGATTTGGAAACC+AGG | 0.604379 | 6_1:-78522069 | None:intergenic |
| CTCTCCGCACAGAAGGATCA+GGG | 0.604468 | 6_1:-78525689 | None:intergenic |
| ATTCAAAGGAGAAGCAGACA+AGG | 0.606173 | 6_1:+78526803 | Msa0893720:CDS |
| ATTGGTGATCAAATTCGCAA+TGG | 0.607464 | 6_1:+78527086 | Msa0893720:CDS |
| AATTCAATATCGTGTAGTGA+AGG | 0.608558 | 6_1:+78524020 | Msa0893720:CDS |
| TTACTTGCTAGTGAATTCAA+AGG | 0.608596 | 6_1:+78526789 | Msa0893720:CDS |
| GTCTTTCATGCAAGTCGTGT+AGG | 0.617636 | 6_1:+78521761 | Msa0893720:five_prime_UTR |
| GGTAGAAGGAACTTCAGCAA+AGG | 0.621509 | 6_1:+78526950 | Msa0893720:CDS |
| TAAGCCTGGATCTGTTCCTG+CGG | 0.633136 | 6_1:-78524078 | None:intergenic |
| TATCTTGCAATTCTCTAACA+AGG | 0.634296 | 6_1:+78526929 | Msa0893720:CDS |
| TGTGTTGAACAATCAAGCGT+AGG | 0.634971 | 6_1:+78522006 | Msa0893720:CDS |
| GCGTAGGAATTGTTGAACAG+TGG | 0.637775 | 6_1:+78522022 | Msa0893720:CDS |
| CAGCGGCAAGCTATCACAGA+CGG | 0.641687 | 6_1:+78526894 | Msa0893720:CDS |
| TGTCATGGAAGAACTTGGAA+AGG | 0.643353 | 6_1:+78524514 | Msa0893720:CDS |
| GATCACCAATATCCCTAACA+TGG | 0.643726 | 6_1:-78527073 | None:intergenic |
| TAGCATAGAACACATACTGA+TGG | 0.643945 | 6_1:+78525656 | Msa0893720:CDS |
| GGGTTGGTGTGGCAAGACAG+CGG | 0.645395 | 6_1:+78526877 | Msa0893720:CDS |
| ATGTCAAGGAGTGTATAGCA+TGG | 0.669247 | 6_1:-78527431 | None:intergenic |
| CTAACATGGCCAGGTCCATG+AGG | 0.693167 | 6_1:-78527059 | None:intergenic |
| CCAAACTTAATTAAACATAG+CGG | 0.740412 | 6_1:+78521900 | Msa0893720:five_prime_UTR |
| TTATCCCTGATCCTTCTGTG+CGG | 0.752046 | 6_1:+78525685 | Msa0893720:CDS |
| GTAGGAATTGTTGAACAGTG+GGG | 0.794915 | 6_1:+78522024 | Msa0893720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTTTTTTTTAAA+CGG | - | chr6_1:78525286-78525305 | None:intergenic | 0.0% |
| !!! | ATGGTAATAAAATTTTAATT+TGG | - | chr6_1:78521838-78521857 | None:intergenic | 10.0% |
| !!! | TAATTTTTAGATATTTTTAG+AGG | + | chr6_1:78522806-78522825 | Msa0893720:intron | 10.0% |
| !!! | AATTTAGAGATTTTTTAAAA+AGG | - | chr6_1:78523548-78523567 | None:intergenic | 10.0% |
| !!! | AATATAAAAAAAAGTGATTT+TGG | - | chr6_1:78523579-78523598 | None:intergenic | 10.0% |
| !!! | AAATCACTTTTTTTTATATT+CGG | + | chr6_1:78523579-78523598 | Msa0893720:intron | 10.0% |
| !! | TAATTATAGTGAAAAATATA+TGG | + | chr6_1:78524566-78524585 | Msa0893720:intron | 10.0% |
| !!! | GTTGTTTTGAAATATTAATT+TGG | - | chr6_1:78521816-78521835 | None:intergenic | 15.0% |
| !!! | TTAATTAAGTTTGGTTTTTT+TGG | - | chr6_1:78521894-78521913 | None:intergenic | 15.0% |
| !!! | TTGACTAATAATTATTTTCT+AGG | + | chr6_1:78522630-78522649 | Msa0893720:intron | 15.0% |
| !!! | TCAAAAATTATTTTTTTCAG+AGG | + | chr6_1:78522888-78522907 | Msa0893720:intron | 15.0% |
| !!! | GCAAATAAATAAACTTTTTA+TGG | - | chr6_1:78523225-78523244 | None:intergenic | 15.0% |
| !!! | ATTTTCAAAAAATCATAATC+TGG | + | chr6_1:78523400-78523419 | Msa0893720:intron | 15.0% |
| !!! | TTTTCAAAAAATCATAATCT+GGG | + | chr6_1:78523401-78523420 | Msa0893720:intron | 15.0% |
| !!! | TTTTTAAGTCATTTTCATTA+TGG | + | chr6_1:78523498-78523517 | Msa0893720:intron | 15.0% |
| !!! | AATCACTTTTTTTTATATTC+GGG | + | chr6_1:78523580-78523599 | Msa0893720:intron | 15.0% |
| !! | ATAAATAAAACAAATTCAAC+TGG | - | chr6_1:78523897-78523916 | None:intergenic | 15.0% |
| !!! | GAAATTTATTCTCTAATTTT+AGG | + | chr6_1:78525125-78525144 | Msa0893720:intron | 15.0% |
| !! | TAAAATAAGGAGATAAATAT+AGG | + | chr6_1:78525203-78525222 | Msa0893720:intron | 15.0% |
| !! | AAAAAAATTAAAAACTCTCT+TGG | + | chr6_1:78525292-78525311 | Msa0893720:intron | 15.0% |
| !! | AATCACAAAATTTAAGTATT+GGG | + | chr6_1:78525799-78525818 | Msa0893720:intron | 15.0% |
| !! | CAATTTATAATGGTAATATA+TGG | + | chr6_1:78527310-78527329 | Msa0893720:three_prime_UTR | 15.0% |
| !!! | TTTGTTTTTGTTGCTATTTA+TGG | - | chr6_1:78521857-78521876 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGATCTATTGAAT+CGG | - | chr6_1:78521953-78521972 | None:intergenic | 20.0% |
| !! | AATAGATCAAAACAAAAACA+TGG | + | chr6_1:78521957-78521976 | Msa0893720:exon | 20.0% |
| !! | ATAGATCAAAACAAAAACAT+GGG | + | chr6_1:78521958-78521977 | Msa0893720:exon | 20.0% |
| !! | TAAAATTGAAACCAAAACTA+AGG | + | chr6_1:78522149-78522168 | Msa0893720:CDS | 20.0% |
| !!! | TGGTTAAAGTTTGTATTTTT+AGG | + | chr6_1:78522399-78522418 | Msa0893720:intron | 20.0% |
| !!! | GGTTAAAGTTTGTATTTTTA+GGG | + | chr6_1:78522400-78522419 | Msa0893720:intron | 20.0% |
| !!! | GTTAAAGTTTGTATTTTTAG+GGG | + | chr6_1:78522401-78522420 | Msa0893720:intron | 20.0% |
| !!! | ACTGAAAATCAAATTTGTTT+AGG | + | chr6_1:78523062-78523081 | Msa0893720:intron | 20.0% |
| !!! | CTGAAAATCAAATTTGTTTA+GGG | + | chr6_1:78523063-78523082 | Msa0893720:intron | 20.0% |
| !!! | AAGTTTTCATTAACTTGTTA+CGG | + | chr6_1:78523377-78523396 | Msa0893720:intron | 20.0% |
| !!! | AGTTTTCATTAGTTTGTTAT+AGG | - | chr6_1:78523683-78523702 | None:intergenic | 20.0% |
| !! | TGTTACTAGTTATTACTATA+TGG | + | chr6_1:78524190-78524209 | Msa0893720:intron | 20.0% |
| !! | TATTCATACAGTAATTTGAT+CGG | - | chr6_1:78524881-78524900 | None:intergenic | 20.0% |
| !!! | AGGAAGATTTTAATTGTTTT+TGG | + | chr6_1:78525060-78525079 | Msa0893720:intron | 20.0% |
| !! | CAATCACAAAATTTAAGTAT+TGG | + | chr6_1:78525798-78525817 | Msa0893720:intron | 20.0% |
| !!! | TTTGAAGTTGTAAATTAAGA+TGG | + | chr6_1:78527382-78527401 | Msa0893720:three_prime_UTR | 20.0% |
| ! | AATGAATGTGTTATATTCAC+TGG | + | chr6_1:78521730-78521749 | Msa0893720:five_prime_UTR | 25.0% |
| ! | CCAAACTTAATTAAACATAG+CGG | + | chr6_1:78521900-78521919 | Msa0893720:five_prime_UTR | 25.0% |
| !!! | TATTGAATCGGTTTTTGTTA+TGG | - | chr6_1:78521941-78521960 | None:intergenic | 25.0% |
| !! | AAAGAAGAATACCTTAGTTT+TGG | - | chr6_1:78522163-78522182 | None:intergenic | 25.0% |
| !! | CAACAAATTTAACTTAAACC+CGG | - | chr6_1:78522431-78522450 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGGTCATTTTGTT+AGG | + | chr6_1:78522643-78522662 | Msa0893720:intron | 25.0% |
| !!! | TTTTCTAGGTCATTTTGTTA+GGG | + | chr6_1:78522644-78522663 | Msa0893720:intron | 25.0% |
| ! | ATCGAACATAAAACAACTTA+TGG | - | chr6_1:78523036-78523055 | None:intergenic | 25.0% |
| ! | TGAGCTTATGCAAATAAATA+AGG | + | chr6_1:78523108-78523127 | Msa0893720:intron | 25.0% |
| !! | TTCATAAGTTTTCAGAGTAA+CGG | - | chr6_1:78523199-78523218 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCGATACAAAT+GGG | + | chr6_1:78523267-78523286 | Msa0893720:intron | 25.0% |
| !! | TTTTTATATTCGGGAACAAA+CGG | + | chr6_1:78523589-78523608 | Msa0893720:intron | 25.0% |
| ! | CATCAAAAAGTTGTAACAAA+TGG | + | chr6_1:78523743-78523762 | Msa0893720:intron | 25.0% |
| ! | GACATAAAACCAAAAAATTC+AGG | - | chr6_1:78523825-78523844 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTATGTCTCAAT+TGG | + | chr6_1:78523830-78523849 | Msa0893720:intron | 25.0% |
| ! | TATGTGATAATAATAGTGAG+AGG | + | chr6_1:78523947-78523966 | Msa0893720:intron | 25.0% |
| !! | CTTGTCTTTGTTTATGATTT+CGG | + | chr6_1:78524127-78524146 | Msa0893720:intron | 25.0% |
| !!! | AAGATGACTTGGTAATTTTA+AGG | - | chr6_1:78524355-78524374 | None:intergenic | 25.0% |
| ! | TATTGTTCCAAAGATGAATT+TGG | + | chr6_1:78524454-78524473 | Msa0893720:CDS | 25.0% |
| ! | TCATAGAAATATGTAAGTGT+TGG | + | chr6_1:78524595-78524614 | Msa0893720:intron | 25.0% |
| ! | TTACACAAGAGTTTCATAAA+TGG | + | chr6_1:78524643-78524662 | Msa0893720:intron | 25.0% |
| ! | TTATAAGAACATATCCACTA+CGG | - | chr6_1:78524702-78524721 | None:intergenic | 25.0% |
| ! | AATTATTTGTTTCCTGATAC+AGG | + | chr6_1:78525040-78525059 | Msa0893720:intron | 25.0% |
| ! | AATTAAAATCTTCCTGTATC+AGG | - | chr6_1:78525055-78525074 | None:intergenic | 25.0% |
| !! | TGTAACTTGTATGATATCAA+GGG | - | chr6_1:78525098-78525117 | None:intergenic | 25.0% |
| !! | ATGTAACTTGTATGATATCA+AGG | - | chr6_1:78525099-78525118 | None:intergenic | 25.0% |
| ! | ATATCATACAAGTTACATCA+GGG | + | chr6_1:78525101-78525120 | Msa0893720:intron | 25.0% |
| ! | AATATCATTTATCAGGTGAT+GGG | + | chr6_1:78525621-78525640 | Msa0893720:intron | 25.0% |
| !!! | ATCCTAGTTTTATGTTTTGT+GGG | + | chr6_1:78525912-78525931 | Msa0893720:intron | 25.0% |
| !!! | TAGTGGTTATATTAGTTTTC+AGG | + | chr6_1:78525983-78526002 | Msa0893720:intron | 25.0% |
| !!! | AGTGGTTATATTAGTTTTCA+GGG | + | chr6_1:78525984-78526003 | Msa0893720:intron | 25.0% |
| ! | GACATTATTTAACAACACTA+TGG | - | chr6_1:78526148-78526167 | None:intergenic | 25.0% |
| ! | ATGCAATAAACAAACATACA+GGG | - | chr6_1:78526354-78526373 | None:intergenic | 25.0% |
| ! | AATGCAATAAACAAACATAC+AGG | - | chr6_1:78526355-78526374 | None:intergenic | 25.0% |
| ! | CGTATGTTGTAAAAGATAAA+AGG | + | chr6_1:78526479-78526498 | Msa0893720:intron | 25.0% |
| ! | TATTCTTTGAATTGTTTCCA+AGG | - | chr6_1:78527025-78527044 | None:intergenic | 25.0% |
| !! | GATATGTCATTTGTTTATGT+TGG | + | chr6_1:78527332-78527351 | Msa0893720:three_prime_UTR | 25.0% |
| CCGCTATGTTTAATTAAGTT+TGG | - | chr6_1:78521903-78521922 | None:intergenic | 30.0% | |
| TAGAAATGATCCTAGTAATC+TGG | + | chr6_1:78522215-78522234 | Msa0893720:intron | 30.0% | |
| !! | ATCATGAGTTGTTTTGTGTT+TGG | + | chr6_1:78522524-78522543 | Msa0893720:intron | 30.0% |
| !! | AAAGTTGGTATTTCGTAGTT+TGG | + | chr6_1:78522586-78522605 | Msa0893720:intron | 30.0% |
| ! | GGTTGGGTTTAAGTTAAATT+CGG | + | chr6_1:78522607-78522626 | Msa0893720:intron | 30.0% |
| ! | CATTTTGTTAGGGATTATGA+AGG | + | chr6_1:78522654-78522673 | Msa0893720:intron | 30.0% |
| AAAATAAGCCTAATCCAAAC+GGG | - | chr6_1:78523089-78523108 | None:intergenic | 30.0% | |
| CAAAATAAGCCTAATCCAAA+CGG | - | chr6_1:78523090-78523109 | None:intergenic | 30.0% | |
| CAAAAATAAGCCGATACAAA+TGG | + | chr6_1:78523266-78523285 | Msa0893720:intron | 30.0% | |
| AAACCATTTCCCATTTGTAT+CGG | - | chr6_1:78523279-78523298 | None:intergenic | 30.0% | |
| CCTAAAAAAAGTTGTAACAC+AGG | - | chr6_1:78523320-78523339 | None:intergenic | 30.0% | |
| !!! | CCTGTGTTACAACTTTTTTT+AGG | + | chr6_1:78523317-78523336 | Msa0893720:intron | 30.0% |
| ! | TTTTATATTCGGGAACAAAC+GGG | + | chr6_1:78523590-78523609 | Msa0893720:intron | 30.0% |
| !!! | CTGCTTAAACCTGAATTTTT+TGG | + | chr6_1:78523813-78523832 | Msa0893720:intron | 30.0% |
| AATTCAATATCGTGTAGTGA+AGG | + | chr6_1:78524020-78524039 | Msa0893720:CDS | 30.0% | |
| TCAATAGTGATAAGATGACT+TGG | - | chr6_1:78524366-78524385 | None:intergenic | 30.0% | |
| CTCTTGTGTAAAAAGTCTAA+AGG | - | chr6_1:78524634-78524653 | None:intergenic | 30.0% | |
| ACAAGAGTTTCATAAATGGT+GGG | + | chr6_1:78524647-78524666 | Msa0893720:intron | 30.0% | |
| TGTGAATTTCTACTTTCAAG+AGG | - | chr6_1:78524727-78524746 | None:intergenic | 30.0% | |
| !! | TGTTGGTTTGACAAAAACAA+GGG | - | chr6_1:78524858-78524877 | None:intergenic | 30.0% |
| AATTTGACATCTGTCTTTGT+TGG | + | chr6_1:78524943-78524962 | Msa0893720:intron | 30.0% | |
| ! | AGATAGTTGTTAATTTTGCG+TGG | + | chr6_1:78524984-78525003 | Msa0893720:intron | 30.0% |
| GATATCATACAAGTTACATC+AGG | + | chr6_1:78525100-78525119 | Msa0893720:intron | 30.0% | |
| ! | GAGAAAAGTGTGAGTAAAAA+GGG | + | chr6_1:78525225-78525244 | Msa0893720:intron | 30.0% |
| ! | CAATCTAAGGTTTGAGAATA+GGG | - | chr6_1:78525338-78525357 | None:intergenic | 30.0% |
| ! | ACAATCTAAGGTTTGAGAAT+AGG | - | chr6_1:78525339-78525358 | None:intergenic | 30.0% |
| GATTTCTTAAGCACAATCTA+AGG | - | chr6_1:78525351-78525370 | None:intergenic | 30.0% | |
| ATACTCATTCACTTTCTTCA+AGG | + | chr6_1:78525447-78525466 | Msa0893720:intron | 30.0% | |
| GATAAATGATATTCAGAAGG+AGG | - | chr6_1:78525614-78525633 | None:intergenic | 30.0% | |
| CCTGATAAATGATATTCAGA+AGG | - | chr6_1:78525617-78525636 | None:intergenic | 30.0% | |
| CCTTCTGAATATCATTTATC+AGG | + | chr6_1:78525614-78525633 | Msa0893720:intron | 30.0% | |
| GAATATCATTTATCAGGTGA+TGG | + | chr6_1:78525620-78525639 | Msa0893720:intron | 30.0% | |
| ATGCAGGTAATAATACTTTG+TGG | + | chr6_1:78525727-78525746 | Msa0893720:intron | 30.0% | |
| AAACTGAAGTAGCAAAACAT+CGG | - | chr6_1:78525849-78525868 | None:intergenic | 30.0% | |
| TATCATGCAAATAAAGTCGT+GGG | - | chr6_1:78525876-78525895 | None:intergenic | 30.0% | |
| ATATCATGCAAATAAAGTCG+TGG | - | chr6_1:78525877-78525896 | None:intergenic | 30.0% | |
| CACAAAACATAAAACTAGGA+TGG | - | chr6_1:78525913-78525932 | None:intergenic | 30.0% | |
| !!! | CATCCTAGTTTTATGTTTTG+TGG | + | chr6_1:78525911-78525930 | Msa0893720:intron | 30.0% |
| ! | TTAATTTTATCAACCCCTCA+GGG | - | chr6_1:78525939-78525958 | None:intergenic | 30.0% |
| CAACTTTCATATCGGAAAAA+TGG | - | chr6_1:78525962-78525981 | None:intergenic | 30.0% | |
| ACCACTAACAACTTTCATAT+CGG | - | chr6_1:78525970-78525989 | None:intergenic | 30.0% | |
| !! | GTTTTCAGGGTTTGAATTTT+AGG | + | chr6_1:78525997-78526016 | Msa0893720:intron | 30.0% |
| AAGTGAGCTTAAGATATACA+AGG | - | chr6_1:78526087-78526106 | None:intergenic | 30.0% | |
| TTTAACAACACTATGGAGAT+GGG | - | chr6_1:78526141-78526160 | None:intergenic | 30.0% | |
| ATTTAACAACACTATGGAGA+TGG | - | chr6_1:78526142-78526161 | None:intergenic | 30.0% | |
| TGCAATAAACAAACATACAG+GGG | - | chr6_1:78526353-78526372 | None:intergenic | 30.0% | |
| TAATGTCAAACACTGTCATT+TGG | + | chr6_1:78526431-78526450 | Msa0893720:intron | 30.0% | |
| GAGAGATAAAGATGAACAAA+TGG | + | chr6_1:78526507-78526526 | Msa0893720:intron | 30.0% | |
| AAAATACACCTATGAAGCAA+AGG | - | chr6_1:78526707-78526726 | None:intergenic | 30.0% | |
| ! | GATTTAATTTCACAGCTCAA+AGG | + | chr6_1:78526763-78526782 | Msa0893720:intron | 30.0% |
| ! | TTACTTGCTAGTGAATTCAA+AGG | + | chr6_1:78526789-78526808 | Msa0893720:CDS | 30.0% |
| ! | CAAGGTGCTTATTGTTAAAA+AGG | + | chr6_1:78526821-78526840 | Msa0893720:CDS | 30.0% |
| TATCTTGCAATTCTCTAACA+AGG | + | chr6_1:78526929-78526948 | Msa0893720:CDS | 30.0% | |
| CTCATAACATTACAATGTCA+AGG | - | chr6_1:78527448-78527467 | None:intergenic | 30.0% | |
| CAGCAAAAGGGTTAAAGATT+TGG | - | chr6_1:78522080-78522099 | None:intergenic | 35.0% | |
| ! | CAAATCTTTAACCCTTTTGC+TGG | + | chr6_1:78522078-78522097 | Msa0893720:CDS | 35.0% |
| AACATCAAGAGAAGCAATTC+TGG | - | chr6_1:78522130-78522149 | None:intergenic | 35.0% | |
| TTTGTGTCTGTAAATGATCC+TGG | + | chr6_1:78522354-78522373 | Msa0893720:intron | 35.0% | |
| !!! | TTGTATTTTTAGGGGTTGAC+CGG | + | chr6_1:78522409-78522428 | Msa0893720:intron | 35.0% |
| TTTGTGTTTGGAAATGATCC+TGG | + | chr6_1:78522536-78522555 | Msa0893720:intron | 35.0% | |
| TTGGTATTTCGTAGTTTGGT+TGG | + | chr6_1:78522590-78522609 | Msa0893720:intron | 35.0% | |
| TGGTATTTCGTAGTTTGGTT+GGG | + | chr6_1:78522591-78522610 | Msa0893720:intron | 35.0% | |
| !! | GGTCTCTGAGATATTGAATT+TGG | + | chr6_1:78523764-78523783 | Msa0893720:intron | 35.0% |
| !! | ATCCAGGCTTATGTTTTTGA+TGG | + | chr6_1:78524090-78524109 | Msa0893720:CDS | 35.0% |
| AACCATCAAAAACATAAGCC+TGG | - | chr6_1:78524095-78524114 | None:intergenic | 35.0% | |
| !!! | ATTTCGGCTGTTTTTCTATG+CGG | + | chr6_1:78524143-78524162 | Msa0893720:intron | 35.0% |
| CGTCAATGATAAACTCAACT+TGG | - | chr6_1:78524301-78524320 | None:intergenic | 35.0% | |
| TATGTTGTTCGTTGTTGTAG+TGG | + | chr6_1:78524424-78524443 | Msa0893720:intron | 35.0% | |
| !! | TCATCTTTGGAACAATAGCA+CGG | - | chr6_1:78524451-78524470 | None:intergenic | 35.0% |
| AGCTCATCCAAATTCATCTT+TGG | - | chr6_1:78524464-78524483 | None:intergenic | 35.0% | |
| CACAAGAGTTTCATAAATGG+TGG | + | chr6_1:78524646-78524665 | Msa0893720:intron | 35.0% | |
| ! | GGTTGTGATAGTGACTTTAT+CGG | + | chr6_1:78524764-78524783 | Msa0893720:intron | 35.0% |
| ! | CGAGTATAAGTAGAGTTTTG+AGG | + | chr6_1:78524816-78524835 | Msa0893720:intron | 35.0% |
| !! | GTGTTGGTTTGACAAAAACA+AGG | - | chr6_1:78524859-78524878 | None:intergenic | 35.0% |
| TACAGTAATTTGATCGGTGT+TGG | - | chr6_1:78524875-78524894 | None:intergenic | 35.0% | |
| CTGTATGAATATCAGCTATG+AGG | + | chr6_1:78524890-78524909 | Msa0893720:intron | 35.0% | |
| ATTCCAAAAGTAGAAGCTCA+TGG | - | chr6_1:78524926-78524945 | None:intergenic | 35.0% | |
| ! | TAGTTGTTAATTTTGCGTGG+TGG | + | chr6_1:78524987-78525006 | Msa0893720:intron | 35.0% |
| !!! | ATTTTAGGACGAGAAAGACA+TGG | + | chr6_1:78525140-78525159 | Msa0893720:intron | 35.0% |
| AGAGAAGGGTGAGTAAAATA+AGG | + | chr6_1:78525190-78525209 | Msa0893720:intron | 35.0% | |
| ! | GGAGAAAAGTGTGAGTAAAA+AGG | + | chr6_1:78525224-78525243 | Msa0893720:intron | 35.0% |
| GTGAGTAAAAAGGGATAAAG+AGG | + | chr6_1:78525234-78525253 | Msa0893720:intron | 35.0% | |
| GTAAATTAGGAGATTGGTAC+TGG | - | chr6_1:78525587-78525606 | None:intergenic | 35.0% | |
| TAGCATAGAACACATACTGA+TGG | + | chr6_1:78525656-78525675 | Msa0893720:CDS | 35.0% | |
| ! | GACTGTTTCTTATCTTCCTA+TGG | + | chr6_1:78525756-78525775 | Msa0893720:intron | 35.0% |
| ATTGAGTATACTGCTTGATG+TGG | - | chr6_1:78525782-78525801 | None:intergenic | 35.0% | |
| TTGCATGATATCTGATGAAG+TGG | + | chr6_1:78525886-78525905 | Msa0893720:intron | 35.0% | |
| TGCATGATATCTGATGAAGT+GGG | + | chr6_1:78525887-78525906 | Msa0893720:intron | 35.0% | |
| GTCCCACAAAACATAAAACT+AGG | - | chr6_1:78525917-78525936 | None:intergenic | 35.0% | |
| ! | GTTAATTTTATCAACCCCTC+AGG | - | chr6_1:78525940-78525959 | None:intergenic | 35.0% |
| TCCGATATGAAAGTTGTTAG+TGG | + | chr6_1:78525966-78525985 | Msa0893720:intron | 35.0% | |
| !! | ACATTGAAGGAGTTTTAACC+AGG | - | chr6_1:78526026-78526045 | None:intergenic | 35.0% |
| ATGTCCCTTAGTTTACCAAA+CGG | + | chr6_1:78526042-78526061 | Msa0893720:intron | 35.0% | |
| ACAATAACACTGTTGCATAG+TGG | + | chr6_1:78526257-78526276 | Msa0893720:intron | 35.0% | |
| TCTTAGTCAAGCTGCATAAA+GGG | - | chr6_1:78526384-78526403 | None:intergenic | 35.0% | |
| TTCAGTGTAAATACATGTGC+CGG | - | chr6_1:78526626-78526645 | None:intergenic | 35.0% | |
| ! | GAAGCCGAATCAAAGTTTTT+AGG | + | chr6_1:78526852-78526871 | Msa0893720:CDS | 35.0% |
| CAATTCTCTAACAAGGTAGA+AGG | + | chr6_1:78526936-78526955 | Msa0893720:CDS | 35.0% | |
| ! | ACCACAGTTTTTATACCTCA+TGG | + | chr6_1:78527044-78527063 | Msa0893720:CDS | 35.0% |
| TCCATGAGGTATAAAAACTG+TGG | - | chr6_1:78527048-78527067 | None:intergenic | 35.0% | |
| ! | ATTGGTGATCAAATTCGCAA+TGG | + | chr6_1:78527086-78527105 | Msa0893720:CDS | 35.0% |
| TCAAATTCGCAATGGAATGA+TGG | + | chr6_1:78527094-78527113 | Msa0893720:CDS | 35.0% | |
| AACACGTTCTGTTTGTTCTG+TGG | + | chr6_1:78521982-78522001 | Msa0893720:CDS | 40.0% | |
| TGTGTTGAACAATCAAGCGT+AGG | + | chr6_1:78522006-78522025 | Msa0893720:CDS | 40.0% | |
| CGTAGGAATTGTTGAACAGT+GGG | + | chr6_1:78522023-78522042 | Msa0893720:CDS | 40.0% | |
| GTAGGAATTGTTGAACAGTG+GGG | + | chr6_1:78522024-78522043 | Msa0893720:CDS | 40.0% | |
| TTTCAAAGAGTTGCTCAACC+TGG | + | chr6_1:78522051-78522070 | Msa0893720:CDS | 40.0% | |
| GGGTTAAAGATTTGGAAACC+AGG | - | chr6_1:78522072-78522091 | None:intergenic | 40.0% | |
| CAAGACATTCACCAGCAAAA+GGG | - | chr6_1:78522092-78522111 | None:intergenic | 40.0% | |
| ! | GATCCTAGTAATCTGGAGTT+CGG | + | chr6_1:78522222-78522241 | Msa0893720:intron | 40.0% |
| !!! | TGTATTTTTAGGGGTTGACC+GGG | + | chr6_1:78522410-78522429 | Msa0893720:intron | 40.0% |
| CTGGTAATCTTGAGTTCGAT+CGG | + | chr6_1:78522555-78522574 | Msa0893720:intron | 40.0% | |
| ATCTTGAGTTCGATCGGATT+TGG | + | chr6_1:78522561-78522580 | Msa0893720:intron | 40.0% | |
| ! | CGATCGGATTTGGTTAAAGT+TGG | + | chr6_1:78522571-78522590 | Msa0893720:intron | 40.0% |
| ACTGTAGCAAACAGACTTAC+TGG | - | chr6_1:78522914-78522933 | None:intergenic | 40.0% | |
| ! | AAATTTGTTTAGGGCCCGTT+TGG | + | chr6_1:78523072-78523091 | Msa0893720:intron | 40.0% |
| AAGCCGATACAAATGGGAAA+TGG | + | chr6_1:78523273-78523292 | Msa0893720:intron | 40.0% | |
| CAATGAACTCAATGAGAAGC+TGG | + | chr6_1:78523430-78523449 | Msa0893720:intron | 40.0% | |
| !!! | CTGGTTTTGATAGCTTCTCA+TGG | + | chr6_1:78523449-78523468 | Msa0893720:intron | 40.0% |
| !!! | GTGAGAGGTATTTTTGTGTC+TGG | + | chr6_1:78523962-78523981 | Msa0893720:intron | 40.0% |
| CTCTTCAACCTTGTGAAACA+CGG | - | chr6_1:78524228-78524247 | None:intergenic | 40.0% | |
| CAGTTTCTCAAGAGGTTACT+CGG | - | chr6_1:78524262-78524281 | None:intergenic | 40.0% | |
| !! | CATCTTTGGAACAATAGCAC+GGG | - | chr6_1:78524450-78524469 | None:intergenic | 40.0% |
| GATGAGCTGTTTGAGCAAAA+AGG | + | chr6_1:78524476-78524495 | Msa0893720:CDS | 40.0% | |
| AAGTTCTTCCATGACACCTT+TGG | - | chr6_1:78524510-78524529 | None:intergenic | 40.0% | |
| !! | AAAGGTGTCATGGAAGAACT+TGG | + | chr6_1:78524509-78524528 | Msa0893720:CDS | 40.0% |
| TGTCATGGAAGAACTTGGAA+AGG | + | chr6_1:78524514-78524533 | Msa0893720:CDS | 40.0% | |
| ! | GAACCATGAGCTTCTACTTT+TGG | + | chr6_1:78524920-78524939 | Msa0893720:intron | 40.0% |
| AGTGTTTAGAGGAGAGAGAA+GGG | + | chr6_1:78525176-78525195 | Msa0893720:intron | 40.0% | |
| ! | TATCGAAGTTGCAATGGACT+TGG | - | chr6_1:78525373-78525392 | None:intergenic | 40.0% |
| AAGTCCATTGCAACTTCGAT+AGG | + | chr6_1:78525372-78525391 | Msa0893720:intron | 40.0% | |
| ATAGCCTATCGAAGTTGCAA+TGG | - | chr6_1:78525379-78525398 | None:intergenic | 40.0% | |
| GGACGAGTAAATTAGGAGAT+TGG | - | chr6_1:78525593-78525612 | None:intergenic | 40.0% | |
| AGAAGGAGGACGAGTAAATT+AGG | - | chr6_1:78525600-78525619 | None:intergenic | 40.0% | |
| !! | TATCAGGTGATGGGAGAATA+TGG | + | chr6_1:78525630-78525649 | Msa0893720:intron | 40.0% |
| GCAATGAATGAGATCAATGC+AGG | + | chr6_1:78525711-78525730 | Msa0893720:CDS | 40.0% | |
| ATGCAAATAAAGTCGTGGGA+AGG | - | chr6_1:78525872-78525891 | None:intergenic | 40.0% | |
| !! | TTGAAGGAGTTTTAACCAGG+AGG | - | chr6_1:78526023-78526042 | None:intergenic | 40.0% |
| GGTAAACTAAGGGACATTGA+AGG | - | chr6_1:78526039-78526058 | None:intergenic | 40.0% | |
| TGTCCCTTAGTTTACCAAAC+GGG | + | chr6_1:78526043-78526062 | Msa0893720:intron | 40.0% | |
| ATGGGATAAACACATGTGCA+GGG | - | chr6_1:78526123-78526142 | None:intergenic | 40.0% | |
| ACATACAGGGGTTGCATATA+TGG | - | chr6_1:78526341-78526360 | None:intergenic | 40.0% | |
| CTCTTAGTCAAGCTGCATAA+AGG | - | chr6_1:78526385-78526404 | None:intergenic | 40.0% | |
| !! | TGAACAAATGGTGTCACACA+CGG | + | chr6_1:78526519-78526538 | Msa0893720:intron | 40.0% |
| !! | TCTTTGTAGCATCGACACTT+CGG | + | chr6_1:78526552-78526571 | Msa0893720:intron | 40.0% |
| GTCAGTATCCTTTGCTTCAT+AGG | + | chr6_1:78526696-78526715 | Msa0893720:intron | 40.0% | |
| ATTCAAAGGAGAAGCAGACA+AGG | + | chr6_1:78526803-78526822 | Msa0893720:CDS | 40.0% | |
| !! | GCCGAATCAAAGTTTTTAGG+CGG | + | chr6_1:78526855-78526874 | Msa0893720:CDS | 40.0% |
| CCCGCCTAAAAACTTTGATT+CGG | - | chr6_1:78526859-78526878 | None:intergenic | 40.0% | |
| !! | CCGAATCAAAGTTTTTAGGC+GGG | + | chr6_1:78526856-78526875 | Msa0893720:CDS | 40.0% |
| !! | CGAATCAAAGTTTTTAGGCG+GGG | + | chr6_1:78526857-78526876 | Msa0893720:CDS | 40.0% |
| AACTTCAGCAAAGGAAGTGA+TGG | + | chr6_1:78526959-78526978 | Msa0893720:CDS | 40.0% | |
| TTTGACACAATCAGAGACCT+TGG | + | chr6_1:78527005-78527024 | Msa0893720:CDS | 40.0% | |
| ! | GTTTTTATACCTCATGGACC+TGG | + | chr6_1:78527050-78527069 | Msa0893720:CDS | 40.0% |
| GATCACCAATATCCCTAACA+TGG | - | chr6_1:78527076-78527095 | None:intergenic | 40.0% | |
| ! | ATGTCAAGGAGTGTATAGCA+TGG | - | chr6_1:78527434-78527453 | None:intergenic | 40.0% |
| CACGACTTGCATGAAAGACT+TGG | - | chr6_1:78521760-78521779 | None:intergenic | 45.0% | |
| GTCTTTCATGCAAGTCGTGT+AGG | + | chr6_1:78521761-78521780 | Msa0893720:five_prime_UTR | 45.0% | |
| GGTGTGATGTGAGTGTATTG+TGG | - | chr6_1:78521795-78521814 | None:intergenic | 45.0% | |
| GCGTAGGAATTGTTGAACAG+TGG | + | chr6_1:78522022-78522041 | Msa0893720:CDS | 45.0% | |
| GCAAGACATTCACCAGCAAA+AGG | - | chr6_1:78522093-78522112 | None:intergenic | 45.0% | |
| TTTGCTGGTGAATGTCTTGC+TGG | + | chr6_1:78522093-78522112 | Msa0893720:CDS | 45.0% | |
| AGACCGAACTCCAGATTACT+AGG | - | chr6_1:78522228-78522247 | None:intergenic | 45.0% | |
| GATCCTGGTAATCTCGAGTT+CGG | + | chr6_1:78522369-78522388 | Msa0893720:intron | 45.0% | |
| ATCTCGAGTTCGGTCTGATT+TGG | + | chr6_1:78522379-78522398 | Msa0893720:intron | 45.0% | |
| CGATCGAACTCAAGATTACC+AGG | - | chr6_1:78522557-78522576 | None:intergenic | 45.0% | |
| !! | GTATTTTTGTGTCTGGCTGC+AGG | + | chr6_1:78523969-78523988 | Msa0893720:intron | 45.0% |
| TTATGAGTTGCAAAACCCGC+AGG | + | chr6_1:78524062-78524081 | Msa0893720:CDS | 45.0% | |
| ATCTCGAACCGTGTTTCACA+AGG | + | chr6_1:78524217-78524236 | Msa0893720:intron | 45.0% | |
| CGAGTAACCTCTTGAGAAAC+TGG | + | chr6_1:78524260-78524279 | Msa0893720:intron | 45.0% | |
| CAACAAGCCAGTTTCTCAAG+AGG | - | chr6_1:78524270-78524289 | None:intergenic | 45.0% | |
| GCTGTTTGAGCAAAAAGGTG+AGG | + | chr6_1:78524481-78524500 | Msa0893720:CDS | 45.0% | |
| CAAAAAGGTGAGGTTGCCAA+AGG | + | chr6_1:78524491-78524510 | Msa0893720:CDS | 45.0% | |
| !! | ATAAATGGTGGGTTCTGCTG+TGG | + | chr6_1:78524658-78524677 | Msa0893720:intron | 45.0% |
| CACTACGGACAACCTGTTAA+GGG | - | chr6_1:78524687-78524706 | None:intergenic | 45.0% | |
| CACAGTCTTGCTCATGCTTA+CGG | + | chr6_1:78524743-78524762 | Msa0893720:intron | 45.0% | |
| AGGACGAGAAAGACATGGTA+TGG | + | chr6_1:78525145-78525164 | Msa0893720:intron | 45.0% | |
| TCTCTCCTCTAAACACTCAG+AGG | - | chr6_1:78525173-78525192 | None:intergenic | 45.0% | |
| GAGTGTTTAGAGGAGAGAGA+AGG | + | chr6_1:78525175-78525194 | Msa0893720:intron | 45.0% | |
| CTAACCTGAGTCAAGCTAGA+TGG | + | chr6_1:78525258-78525277 | Msa0893720:intron | 45.0% | |
| TTATCCCTGATCCTTCTGTG+CGG | + | chr6_1:78525685-78525704 | Msa0893720:CDS | 45.0% | |
| ATACTGCTTGATGTGGCCAT+AGG | - | chr6_1:78525775-78525794 | None:intergenic | 45.0% | |
| ! | TTATGTTTTGTGGGACCCTG+AGG | + | chr6_1:78525921-78525940 | Msa0893720:intron | 45.0% |
| ! | TATGTTTTGTGGGACCCTGA+GGG | + | chr6_1:78525922-78525941 | Msa0893720:intron | 45.0% |
| ! | GGTTTGAATTTTAGGCCTCC+TGG | + | chr6_1:78526005-78526024 | Msa0893720:intron | 45.0% |
| CAGCCCGTTTGGTAAACTAA+GGG | - | chr6_1:78526049-78526068 | None:intergenic | 45.0% | |
| ACAGCCCGTTTGGTAAACTA+AGG | - | chr6_1:78526050-78526069 | None:intergenic | 45.0% | |
| TGGGATAAACACATGTGCAG+GGG | - | chr6_1:78526122-78526141 | None:intergenic | 45.0% | |
| GATGGGATAAACACATGTGC+AGG | - | chr6_1:78526124-78526143 | None:intergenic | 45.0% | |
| TGTCAGACGATGACATGTGT+CGG | - | chr6_1:78526598-78526617 | None:intergenic | 45.0% | |
| GAAGCAAAGGATACTGACAC+CGG | - | chr6_1:78526694-78526713 | None:intergenic | 45.0% | |
| !! | TCAAAGTTTTTAGGCGGGGT+TGG | + | chr6_1:78526861-78526880 | Msa0893720:CDS | 45.0% |
| GGTAGAAGGAACTTCAGCAA+AGG | + | chr6_1:78526950-78526969 | Msa0893720:CDS | 45.0% | |
| !! | TATAATATATCAATTTATAA+TGG | + | chr6_1:78527300-78527319 | Msa0893720:three_prime_UTR | 5.0% |
| AGACCGAACTCGAGATTACC+AGG | - | chr6_1:78522375-78522394 | None:intergenic | 50.0% | |
| ! | GTTTAGGGCCCGTTTGGATT+AGG | + | chr6_1:78523078-78523097 | Msa0893720:intron | 50.0% |
| TAAGCCTGGATCTGTTCCTG+CGG | - | chr6_1:78524081-78524100 | None:intergenic | 50.0% | |
| !! | TGAGGTTGCCAAAGGTGTCA+TGG | + | chr6_1:78524499-78524518 | Msa0893720:CDS | 50.0% |
| CCACTACGGACAACCTGTTA+AGG | - | chr6_1:78524688-78524707 | None:intergenic | 50.0% | |
| CCTTAACAGGTTGTCCGTAG+TGG | + | chr6_1:78524685-78524704 | Msa0893720:intron | 50.0% | |
| TGGTGCCTCTGAGTGTTTAG+AGG | + | chr6_1:78525165-78525184 | Msa0893720:intron | 50.0% | |
| ! | GGATCCATCTAGCTTGACTC+AGG | - | chr6_1:78525265-78525284 | None:intergenic | 50.0% |
| TTCATTGCTCTCCGCACAGA+AGG | - | chr6_1:78525699-78525718 | None:intergenic | 50.0% | |
| ! | ATGTTTTGTGGGACCCTGAG+GGG | + | chr6_1:78525923-78525942 | Msa0893720:intron | 50.0% |
| !! | TACCAAACGGGCTGTCTACT+TGG | + | chr6_1:78526055-78526074 | Msa0893720:intron | 50.0% |
| !! | ACCAAACGGGCTGTCTACTT+GGG | + | chr6_1:78526056-78526075 | Msa0893720:intron | 50.0% |
| GTCATCGTCTGACATGAGAC+CGG | + | chr6_1:78526604-78526623 | Msa0893720:intron | 50.0% | |
| TCATGGACCTGGCCATGTTA+GGG | + | chr6_1:78527061-78527080 | Msa0893720:CDS | 50.0% | |
| CCAATATCCCTAACATGGCC+AGG | - | chr6_1:78527071-78527090 | None:intergenic | 50.0% | |
| CCTGGCCATGTTAGGGATAT+TGG | + | chr6_1:78527068-78527087 | Msa0893720:CDS | 50.0% | |
| AAACCCGCAGGAACAGATCC+AGG | + | chr6_1:78524074-78524093 | Msa0893720:CDS | 55.0% | |
| AAGCCTGGATCTGTTCCTGC+GGG | - | chr6_1:78524080-78524099 | None:intergenic | 55.0% | |
| CTGCTGTGGACTCCCTTAAC+AGG | + | chr6_1:78524672-78524691 | Msa0893720:intron | 55.0% | |
| CTCTCCGCACAGAAGGATCA+GGG | - | chr6_1:78525692-78525711 | None:intergenic | 55.0% | |
| TCCCAAGTAGACAGCCCGTT+TGG | - | chr6_1:78526060-78526079 | None:intergenic | 55.0% | |
| ! | GCATCGACACTTCGGATCGA+AGG | + | chr6_1:78526560-78526579 | Msa0893720:intron | 55.0% |
| ! | CTTCGGATCGAAGGCATGTC+CGG | + | chr6_1:78526569-78526588 | Msa0893720:intron | 55.0% |
| CGATGACATGTGTCGGACAC+CGG | - | chr6_1:78526591-78526610 | None:intergenic | 55.0% | |
| TGTGTCCACGTCTCAGTGTC+CGG | + | chr6_1:78526672-78526691 | Msa0893720:intron | 55.0% | |
| !!! | GTTTTTAGGCGGGGTTGGTG+TGG | + | chr6_1:78526866-78526885 | Msa0893720:CDS | 55.0% |
| CAGCGGCAAGCTATCACAGA+CGG | + | chr6_1:78526894-78526913 | Msa0893720:CDS | 55.0% | |
| CTAACATGGCCAGGTCCATG+AGG | - | chr6_1:78527062-78527081 | None:intergenic | 55.0% | |
| CTCATGGACCTGGCCATGTT+AGG | + | chr6_1:78527060-78527079 | Msa0893720:CDS | 55.0% | |
| GCTCTCCGCACAGAAGGATC+AGG | - | chr6_1:78525693-78525712 | None:intergenic | 60.0% | |
| TGACACCGGACACTGAGACG+TGG | - | chr6_1:78526680-78526699 | None:intergenic | 60.0% | |
| !! | GGGTTGGTGTGGCAAGACAG+CGG | + | chr6_1:78526877-78526896 | Msa0893720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 78521728 | 78527522 | 78521728 | ID=Msa0893720;Name=Msa0893720 |
| chr6_1 | mRNA | 78521728 | 78527522 | 78521728 | ID=Msa0893720-mRNA-1;Parent=Msa0893720;Name=Msa0893720-mRNA-1;_AED=0.04;_eAED=0.04;_QI=248|1|1|1|1|1|5|371|292 |
| chr6_1 | exon | 78521728 | 78522170 | 78521728 | ID=Msa0893720-mRNA-1:exon:13088;Parent=Msa0893720-mRNA-1 |
| chr6_1 | exon | 78523991 | 78524111 | 78523991 | ID=Msa0893720-mRNA-1:exon:13089;Parent=Msa0893720-mRNA-1 |
| chr6_1 | exon | 78524444 | 78524535 | 78524444 | ID=Msa0893720-mRNA-1:exon:13090;Parent=Msa0893720-mRNA-1 |
| chr6_1 | exon | 78525636 | 78525732 | 78525636 | ID=Msa0893720-mRNA-1:exon:13091;Parent=Msa0893720-mRNA-1 |
| chr6_1 | exon | 78526778 | 78527522 | 78526778 | ID=Msa0893720-mRNA-1:exon:13092;Parent=Msa0893720-mRNA-1 |
| chr6_1 | five_prime_UTR | 78521728 | 78521975 | 78521728 | ID=Msa0893720-mRNA-1:five_prime_utr;Parent=Msa0893720-mRNA-1 |
| chr6_1 | CDS | 78521976 | 78522170 | 78521976 | ID=Msa0893720-mRNA-1:cds;Parent=Msa0893720-mRNA-1 |
| chr6_1 | CDS | 78523991 | 78524111 | 78523991 | ID=Msa0893720-mRNA-1:cds;Parent=Msa0893720-mRNA-1 |
| chr6_1 | CDS | 78524444 | 78524535 | 78524444 | ID=Msa0893720-mRNA-1:cds;Parent=Msa0893720-mRNA-1 |
| chr6_1 | CDS | 78525636 | 78525732 | 78525636 | ID=Msa0893720-mRNA-1:cds;Parent=Msa0893720-mRNA-1 |
| chr6_1 | CDS | 78526778 | 78527151 | 78526778 | ID=Msa0893720-mRNA-1:cds;Parent=Msa0893720-mRNA-1 |
| chr6_1 | three_prime_UTR | 78527152 | 78527522 | 78527152 | ID=Msa0893720-mRNA-1:three_prime_utr;Parent=Msa0893720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
