Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920480 | XP_013452417.1 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920480 | sp|Q9FHM7|HIR4_ARATH | 81.849 | 292 | 52 | 1 | 1 | 291 | 1 | 292 | 0.0 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0893720 | Msa0920480 | 0.818604 | 1.797400e-52 | -8.615850e-47 |
| Msa0898880 | Msa0920480 | 0.800713 | 1.266550e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920480 | MtrunA17_Chr6g0476481 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 602 |
| Msa0920480 | MtrunA17_Chr6g0452801 | 57.092 | 282 | 121 | 0 | 7 | 288 | 5 | 286 | 1.32e-114 | 332 |
| Msa0920480 | MtrunA17_Chr4g0060101 | 58.803 | 284 | 115 | 1 | 1 | 284 | 1 | 282 | 2.13e-114 | 331 |
| Msa0920480 | MtrunA17_Chr8g0362631 | 55.124 | 283 | 127 | 0 | 5 | 287 | 3 | 285 | 1.28e-113 | 329 |
| Msa0920480 | MtrunA17_Chr4g0060111 | 56.446 | 287 | 123 | 1 | 1 | 287 | 1 | 285 | 1.36e-112 | 327 |
| Msa0920480 | MtrunA17_Chr4g0060151 | 56.446 | 287 | 123 | 1 | 1 | 287 | 1 | 285 | 1.36e-112 | 327 |
| Msa0920480 | MtrunA17_Chr4g0060091 | 56.690 | 284 | 121 | 1 | 1 | 284 | 6 | 287 | 1.40e-110 | 322 |
| Msa0920480 | MtrunA17_Chr4g0060171 | 53.584 | 293 | 125 | 2 | 1 | 284 | 1 | 291 | 9.91e-109 | 317 |
| Msa0920480 | MtrunA17_Chr6g0476411 | 96.491 | 57 | 2 | 0 | 236 | 292 | 1 | 57 | 6.62e-35 | 120 |
| Msa0920480 | MtrunA17_Chr6g0476421 | 93.220 | 59 | 3 | 1 | 150 | 207 | 1 | 59 | 1.80e-28 | 103 |
| Msa0920480 | MtrunA17_Chr6g0476371 | 83.784 | 37 | 6 | 0 | 137 | 173 | 2 | 38 | 2.45e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920480 | AT5G51570.1 | 81.849 | 292 | 52 | 1 | 1 | 291 | 1 | 292 | 0.0 | 504 |
| Msa0920480 | AT3G01290.1 | 57.692 | 286 | 119 | 1 | 1 | 286 | 1 | 284 | 1.31e-121 | 350 |
| Msa0920480 | AT5G62740.1 | 55.903 | 288 | 125 | 1 | 1 | 288 | 1 | 286 | 5.40e-116 | 335 |
| Msa0920480 | AT1G69840.1 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0920480 | AT1G69840.2 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0920480 | AT1G69840.5 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0920480 | AT1G69840.7 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0920480 | AT1G69840.4 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0920480 | AT1G69840.6 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
| Msa0920480 | AT1G69840.3 | 56.429 | 280 | 122 | 0 | 7 | 286 | 5 | 284 | 7.71e-108 | 315 |
Find 75 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGTGCTTATTGTTAAAA+AGG | 0.209960 | 6_2:-55566607 | Msa0920480:CDS |
| GTGAATCAACACAATCATTT+TGG | 0.211013 | 6_2:+55571524 | None:intergenic |
| CATATAAAATAGTAACTTAT+TGG | 0.268410 | 6_2:-55566142 | Msa0920480:three_prime_UTR |
| AAAGAGAAATACCTTAGTTT+TGG | 0.287824 | 6_2:+55571082 | None:intergenic |
| AGTAACTTATTGGTAATATA+TGG | 0.289253 | 6_2:-55566132 | Msa0920480:three_prime_UTR |
| AGCTCATCCAAATTCATCTT+TGG | 0.290409 | 6_2:+55568964 | None:intergenic |
| CCGCTAAGTTTAATTAAGTT+TGG | 0.298892 | 6_2:+55571342 | None:intergenic |
| TATTGTTCCAAAGATGAATT+TGG | 0.304736 | 6_2:-55568971 | Msa0920480:CDS |
| TTTGCTGGTGAATGTCTTGC+TGG | 0.306419 | 6_2:-55571149 | Msa0920480:CDS |
| AGTAATTTACTGGTAATATA+TGG | 0.313821 | 6_2:-55566202 | Msa0920480:three_prime_UTR |
| AACATCAAGAGAAGCAATTC+TGG | 0.314593 | 6_2:+55571115 | None:intergenic |
| CATATAAAATAGTAATTTAC+TGG | 0.315603 | 6_2:-55566212 | Msa0920480:three_prime_UTR |
| TATCAGGTGATGGGAGAATA+TGG | 0.348103 | 6_2:-55567792 | Msa0920480:intron |
| CTCATGGACCTGGCCATGTT+AGG | 0.353338 | 6_2:-55566368 | Msa0920480:CDS |
| CCTGGCCATGTTAGGGATAT+CGG | 0.370529 | 6_2:-55566360 | Msa0920480:CDS |
| AAAGACTTGGAAAACATAGA+TGG | 0.401567 | 6_2:+55571498 | None:intergenic |
| GATGAGCTGTTTGAGCAAAA+AGG | 0.421318 | 6_2:-55568949 | Msa0920480:CDS |
| AAGTTCTTCCATGACACCTT+TGG | 0.440981 | 6_2:+55568918 | None:intergenic |
| GCTCTCCGCACAGAAGGATC+AGG | 0.443521 | 6_2:+55567732 | None:intergenic |
| GCAAGACATTCACCAGCAAA+AGG | 0.445848 | 6_2:+55571152 | None:intergenic |
| GATATGTCATTTGTTTATGT+TGG | 0.454778 | 6_2:-55566110 | Msa0920480:three_prime_UTR |
| GATATGTCATTTGTTTATGT+TGG | 0.454778 | 6_2:-55566180 | Msa0920480:three_prime_UTR |
| TCATGGACCTGGCCATGTTA+GGG | 0.460907 | 6_2:-55566367 | Msa0920480:CDS |
| CAATTCTCTAACAAGGTAGA+AGG | 0.463722 | 6_2:-55566492 | Msa0920480:CDS |
| TATTCTTTGAATTGTTTCCA+AGG | 0.488072 | 6_2:+55566406 | None:intergenic |
| AAAGGTGTCATGGAAGAACT+TGG | 0.494843 | 6_2:-55568916 | Msa0920480:CDS |
| TCAAATTCGCAACGGTATGA+TGG | 0.502780 | 6_2:-55566334 | Msa0920480:CDS |
| CCAAACTTAATTAAACTTAG+CGG | 0.503227 | 6_2:-55571342 | Msa0920480:five_prime_UTR |
| CACGACTTGCATGAAAGACT+TGG | 0.510583 | 6_2:+55571485 | None:intergenic |
| CGTAGGAATTGTTGAACAGT+GGG | 0.512259 | 6_2:-55571219 | Msa0920480:CDS |
| AAACCCGCAGGAACAGATCC+AGG | 0.515245 | 6_2:-55569351 | Msa0920480:CDS |
| TTCATTGCTCTCCGCACAGA+AGG | 0.519425 | 6_2:+55567726 | None:intergenic |
| TTTGACACAATCAGAGACCT+TGG | 0.519786 | 6_2:-55566423 | Msa0920480:CDS |
| TAAAATTGAAACCAAAACTA+AGG | 0.521802 | 6_2:-55571093 | Msa0920480:intron |
| GTGTGAATTTGTAATTAAGA+TGG | 0.527246 | 6_2:-55566061 | Msa0920480:three_prime_UTR |
| AACACGTTCTGTTTATTCTG+TGG | 0.539422 | 6_2:-55571260 | Msa0920480:CDS |
| CCGATATCCCTAACATGGCC+AGG | 0.539528 | 6_2:+55566360 | None:intergenic |
| GTCTTCTATCTCTCTCACAC+AGG | 0.540459 | 6_2:-55566239 | Msa0920480:three_prime_UTR |
| AACTTCAGCGAAGGAAGTGA+TGG | 0.541593 | 6_2:-55566469 | Msa0920480:CDS |
| AAGCCTGGATCTGTTCCTGC+GGG | 0.541976 | 6_2:+55569348 | None:intergenic |
| TGAGGTTGCCAAAGGTGTCA+TGG | 0.542605 | 6_2:-55568926 | Msa0920480:CDS |
| TTTCAAAGAGTTGCTCAACC+TGG | 0.547043 | 6_2:-55571191 | Msa0920480:CDS |
| GGGTTGGTGTAGCAAGGCAG+AGG | 0.552146 | 6_2:-55566551 | Msa0920480:CDS |
| AATATCATTTATCAGGTGAT+GGG | 0.558275 | 6_2:-55567801 | Msa0920480:intron |
| GCAATGAATGAGATCAATGC+AGG | 0.559095 | 6_2:-55567711 | Msa0920480:intron |
| TTATGAGTTGCAAAACCCGC+AGG | 0.561790 | 6_2:-55569363 | Msa0920480:CDS |
| CAAGACATTCACCAGCAAAA+GGG | 0.568721 | 6_2:+55571153 | None:intergenic |
| TAGGCGGGGTTGGTGTAGCA+AGG | 0.578438 | 6_2:-55566557 | Msa0920480:CDS |
| GGTGTGATGTGAGTGTATTG+TGG | 0.578576 | 6_2:+55571450 | None:intergenic |
| CAGAGGCAAGCTATCACAGA+TGG | 0.588640 | 6_2:-55566534 | Msa0920480:CDS |
| GATTTAATTTCACAGCTCAA+AGG | 0.589650 | 6_2:-55566665 | Msa0920480:intron |
| CATCTTTGGAACAATAGCAC+GGG | 0.597133 | 6_2:+55568978 | None:intergenic |
| TCATCTTTGGAACAATAGCA+CGG | 0.599186 | 6_2:+55568977 | None:intergenic |
| CTCTCCGCACAGAAGGATCA+GGG | 0.604468 | 6_2:+55567733 | None:intergenic |
| CATCTTGCAATTCTCTAACA+AGG | 0.604842 | 6_2:-55566499 | Msa0920480:CDS |
| ATTCAAAGGAGAAGCAGACA+AGG | 0.606173 | 6_2:-55566625 | Msa0920480:CDS |
| AATTCAATATCGTGTAGTGA+AGG | 0.608558 | 6_2:-55569405 | Msa0920480:CDS |
| ATTCTCATAACATTATGTCA+AGG | 0.608592 | 6_2:+55566006 | None:intergenic |
| TTACTTGCTAGTGAATTCAA+AGG | 0.608596 | 6_2:-55566639 | Msa0920480:CDS |
| GGGTTAAAGATTTGAAAACC+AGG | 0.613444 | 6_2:+55571173 | None:intergenic |
| GTCTTTCATGCAAGTCGTGT+AGG | 0.617636 | 6_2:-55571481 | Msa0920480:five_prime_UTR |
| GGTAGAAGGAACTTCAGCGA+AGG | 0.623591 | 6_2:-55566478 | Msa0920480:CDS |
| TCTTCTATCTCTCTCACACA+GGG | 0.623821 | 6_2:-55566238 | Msa0920480:three_prime_UTR |
| ATGTCAAGGAATGTATAGCA+TGG | 0.632616 | 6_2:+55566020 | None:intergenic |
| TAAGCCTGGATCTGTTCCTG+CGG | 0.633136 | 6_2:+55569347 | None:intergenic |
| TGTGTTGAACAATCAAGCGT+AGG | 0.634971 | 6_2:-55571236 | Msa0920480:CDS |
| GCGTAGGAATTGTTGAACAG+TGG | 0.637775 | 6_2:-55571220 | Msa0920480:CDS |
| TGTCATGGAAGAACTTGGAA+AGG | 0.643353 | 6_2:-55568911 | Msa0920480:intron |
| TAGCATAGAACACATACTGA+TGG | 0.643945 | 6_2:-55567766 | Msa0920480:CDS |
| GTGAGAGAGATAGAAGACAC+AGG | 0.652162 | 6_2:+55566244 | None:intergenic |
| ATCGGTGATCAAATTCGCAA+CGG | 0.655254 | 6_2:-55566342 | Msa0920480:CDS |
| GATCACCGATATCCCTAACA+TGG | 0.657207 | 6_2:+55566355 | None:intergenic |
| CTAACATGGCCAGGTCCATG+AGG | 0.693167 | 6_2:+55566369 | None:intergenic |
| TTATCCCTGATCCTTCTGTG+CGG | 0.752046 | 6_2:-55567737 | Msa0920480:CDS |
| GTAGGAATTGTTGAACAGTG+GGG | 0.794915 | 6_2:-55571218 | Msa0920480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTTTTTTTTAAA+CGG | + | chr6_2:55569291-55569310 | None:intergenic | 0.0% |
| !!! | ATGGTAATAAAATTTTAATT+TGG | + | chr6_2:55566025-55566044 | None:intergenic | 10.0% |
| !!! | TAATTTTTAGATATTTTTAG+AGG | - | chr6_2:55566811-55566830 | Msa0920480:intron | 10.0% |
| !!! | AATTTAGAGATTTTTTAAAA+AGG | + | chr6_2:55567551-55567570 | None:intergenic | 10.0% |
| !!! | ATATAAAAAAAAAGTGATTT+TGG | + | chr6_2:55567582-55567601 | None:intergenic | 10.0% |
| !!! | AATCACTTTTTTTTTATATT+CGG | - | chr6_2:55567583-55567602 | Msa0920480:intron | 10.0% |
| !! | TAATTATAGTGAAAAATATA+TGG | - | chr6_2:55568570-55568589 | Msa0920480:intron | 10.0% |
| !!! | GTTGTTTTGAAATATTAATT+TGG | + | chr6_2:55566003-55566022 | None:intergenic | 15.0% |
| !!! | TTAATTAAGTTTGGTTTTTT+TGG | + | chr6_2:55566081-55566100 | None:intergenic | 15.0% |
| !!! | TTGACTAATAATTATTTTCT+AGG | - | chr6_2:55566636-55566655 | Msa0920480:CDS | 15.0% |
| !!! | TCAAAAATTATTTTTTTCAG+AGG | - | chr6_2:55566893-55566912 | Msa0920480:intron | 15.0% |
| !!! | GCAAATAAATAAACTTTTTA+TGG | + | chr6_2:55567228-55567247 | None:intergenic | 15.0% |
| !!! | ATTTTCAAAAAATGATAATC+TGG | - | chr6_2:55567403-55567422 | Msa0920480:intron | 15.0% |
| !!! | TTTTCAAAAAATGATAATCT+GGG | - | chr6_2:55567404-55567423 | Msa0920480:intron | 15.0% |
| !!! | TTTTTAAGTCATTTTCATTA+TGG | - | chr6_2:55567501-55567520 | Msa0920480:intron | 15.0% |
| !!! | ATCACTTTTTTTTTATATTC+GGG | - | chr6_2:55567584-55567603 | Msa0920480:intron | 15.0% |
| !! | ATAAATAAAACAAATTCAAC+TGG | + | chr6_2:55567901-55567920 | None:intergenic | 15.0% |
| !!! | GAAATTTATTCTCTAATTTT+AGG | - | chr6_2:55569130-55569149 | Msa0920480:intron | 15.0% |
| !! | TAAAATAAGGAGATAAATAT+AGG | - | chr6_2:55569208-55569227 | Msa0920480:intron | 15.0% |
| !! | AAAAAAATTAAAAACTCTCT+TGG | - | chr6_2:55569297-55569316 | Msa0920480:intron | 15.0% |
| !! | AATCACAAAATTTAAGTATT+GGG | - | chr6_2:55569806-55569825 | Msa0920480:intron | 15.0% |
| !! | CATATAAAATAGTAATTTAC+TGG | - | chr6_2:55571217-55571236 | Msa0920480:CDS | 15.0% |
| !! | CATATAAAATAGTAACTTAT+TGG | - | chr6_2:55571287-55571306 | Msa0920480:exon | 15.0% |
| !!! | TTTGTTTTTGTTGCTATTTA+TGG | + | chr6_2:55566044-55566063 | None:intergenic | 20.0% |
| !! | AATAGATCAAAACCAAAAAA+TGG | - | chr6_2:55566144-55566163 | Msa0920480:three_prime_UTR | 20.0% |
| !! | ATAGATCAAAACCAAAAAAT+GGG | - | chr6_2:55566145-55566164 | Msa0920480:three_prime_UTR | 20.0% |
| !! | TAAAATTGAAACCAAAACTA+AGG | - | chr6_2:55566336-55566355 | Msa0920480:CDS | 20.0% |
| !! | ATCGAACATAAAAAAACTTA+TGG | + | chr6_2:55567039-55567058 | None:intergenic | 20.0% |
| !!! | ACTGAAAATCAAATTTGTTT+AGG | - | chr6_2:55567065-55567084 | Msa0920480:intron | 20.0% |
| !!! | CTGAAAATCAAATTTGTTTA+GGG | - | chr6_2:55567066-55567085 | Msa0920480:intron | 20.0% |
| !!! | AAGTTTTCATTAACTTGTTA+CGG | - | chr6_2:55567380-55567399 | Msa0920480:intron | 20.0% |
| !!! | AGTTTTCATTAGTTTGTTAT+AGG | + | chr6_2:55567687-55567706 | None:intergenic | 20.0% |
| !! | TGTTACTAGTTATTACTATA+TGG | - | chr6_2:55568194-55568213 | Msa0920480:intron | 20.0% |
| !! | TATTCATACAGTAATTTGAT+CGG | + | chr6_2:55568885-55568904 | None:intergenic | 20.0% |
| !!! | AGGAAGATTTTAATTGTTTT+TGG | - | chr6_2:55569065-55569084 | Msa0920480:intron | 20.0% |
| !! | CAATCACAAAATTTAAGTAT+TGG | - | chr6_2:55569805-55569824 | Msa0920480:intron | 20.0% |
| !! | AGTAATTTACTGGTAATATA+TGG | - | chr6_2:55571227-55571246 | Msa0920480:CDS | 20.0% |
| !!! | AGTAACTTATTGGTAATATA+TGG | - | chr6_2:55571297-55571316 | Msa0920480:five_prime_UTR | 20.0% |
| ! | CCAAACTTAATTAAACTTAG+CGG | - | chr6_2:55566087-55566106 | Msa0920480:three_prime_UTR | 25.0% |
| !!! | TATTGAATCGGTTTTTGTTA+TGG | + | chr6_2:55566128-55566147 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGATCTATTGAAT+CGG | + | chr6_2:55566140-55566159 | None:intergenic | 25.0% |
| !! | AAAGAGAAATACCTTAGTTT+TGG | + | chr6_2:55566350-55566369 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGGTCATTTTGTT+AGG | - | chr6_2:55566649-55566668 | Msa0920480:CDS | 25.0% |
| !!! | TTTTCTAGGTCATTTTGTTA+GGG | - | chr6_2:55566650-55566669 | Msa0920480:CDS | 25.0% |
| ! | TGAGCTTATGCAAATAAATA+AGG | - | chr6_2:55567111-55567130 | Msa0920480:intron | 25.0% |
| ! | AAAAATAAGCCGATACAAAT+GGG | - | chr6_2:55567270-55567289 | Msa0920480:intron | 25.0% |
| !! | TTTTTATATTCGGGAACAAA+CGG | - | chr6_2:55567593-55567612 | Msa0920480:intron | 25.0% |
| ! | CATCAAAAAGTTGTAACAAA+TGG | - | chr6_2:55567747-55567766 | Msa0920480:CDS | 25.0% |
| ! | GACATAAAACCAAAAAATTC+AGG | + | chr6_2:55567829-55567848 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTATGTCTCAAT+TGG | - | chr6_2:55567834-55567853 | Msa0920480:intron | 25.0% |
| ! | TATGTGATAATAATAGTGAG+AGG | - | chr6_2:55567951-55567970 | Msa0920480:intron | 25.0% |
| !! | CTTGTCTTTGTTTATGATTT+CGG | - | chr6_2:55568131-55568150 | Msa0920480:intron | 25.0% |
| !!! | AAGATGACTTGGTAATTTTA+AGG | + | chr6_2:55568359-55568378 | None:intergenic | 25.0% |
| ! | TATTGTTCCAAAGATGAATT+TGG | - | chr6_2:55568458-55568477 | Msa0920480:intron | 25.0% |
| ! | TCATAGAAATATGTAAGTGT+TGG | - | chr6_2:55568599-55568618 | Msa0920480:intron | 25.0% |
| ! | TTACACAAGAGTTTCATAAA+TGG | - | chr6_2:55568647-55568666 | Msa0920480:intron | 25.0% |
| ! | TTATAAGAACATATCCACTA+CGG | + | chr6_2:55568706-55568725 | None:intergenic | 25.0% |
| !!! | GTATAGTTTTTAATTTTGCG+TGG | - | chr6_2:55568989-55569008 | Msa0920480:intron | 25.0% |
| ! | AATTATTTGTTTCCTGATAC+AGG | - | chr6_2:55569045-55569064 | Msa0920480:intron | 25.0% |
| ! | AATTAAAATCTTCCTGTATC+AGG | + | chr6_2:55569060-55569079 | None:intergenic | 25.0% |
| !! | TGTAACTTGTATGATATCAA+GGG | + | chr6_2:55569103-55569122 | None:intergenic | 25.0% |
| !! | ATGTAACTTGTATGATATCA+AGG | + | chr6_2:55569104-55569123 | None:intergenic | 25.0% |
| ! | ATATCATACAAGTTACATCA+GGG | - | chr6_2:55569106-55569125 | Msa0920480:intron | 25.0% |
| ! | AATATCATTTATCAGGTGAT+GGG | - | chr6_2:55569628-55569647 | Msa0920480:intron | 25.0% |
| !!! | ATCCTAGTTTTATGTTTTGT+GGG | - | chr6_2:55569919-55569938 | Msa0920480:intron | 25.0% |
| !!! | TAGTGGTTATATTAGTTTTC+AGG | - | chr6_2:55569990-55570009 | Msa0920480:intron | 25.0% |
| !!! | AGTGGTTATATTAGTTTTCA+GGG | - | chr6_2:55569991-55570010 | Msa0920480:intron | 25.0% |
| ! | GACATTATTTAACAACACTA+TGG | + | chr6_2:55570155-55570174 | None:intergenic | 25.0% |
| ! | ATGCAATAAACAAACATACA+GGG | + | chr6_2:55570361-55570380 | None:intergenic | 25.0% |
| ! | AATGCAATAAACAAACATAC+AGG | + | chr6_2:55570362-55570381 | None:intergenic | 25.0% |
| ! | ATGTGCGTATAAAAGATAAA+AGG | - | chr6_2:55570480-55570499 | Msa0920480:intron | 25.0% |
| ! | TATTCTTTGAATTGTTTCCA+AGG | + | chr6_2:55571026-55571045 | None:intergenic | 25.0% |
| !! | GATATGTCATTTGTTTATGT+TGG | - | chr6_2:55571249-55571268 | Msa0920480:CDS | 25.0% |
| !! | GATATGTCATTTGTTTATGT+TGG | - | chr6_2:55571249-55571268 | Msa0920480:CDS | 25.0% |
| ! | GTGTGAATTTGTAATTAAGA+TGG | - | chr6_2:55571368-55571387 | Msa0920480:five_prime_UTR | 25.0% |
| ! | ATTCTCATAACATTATGTCA+AGG | + | chr6_2:55571426-55571445 | None:intergenic | 25.0% |
| AAAGACTTGGAAAACATAGA+TGG | + | chr6_2:55565934-55565953 | None:intergenic | 30.0% | |
| CCGCTAAGTTTAATTAAGTT+TGG | + | chr6_2:55566090-55566109 | None:intergenic | 30.0% | |
| TAGAAATGATCCTAGTAATC+TGG | - | chr6_2:55566405-55566424 | Msa0920480:CDS | 30.0% | |
| !! | AAAGTTGGTATTTCGTAGTT+TGG | - | chr6_2:55566592-55566611 | Msa0920480:CDS | 30.0% |
| ! | GGTTGGGTTTAAGTTAAATT+CGG | - | chr6_2:55566613-55566632 | Msa0920480:CDS | 30.0% |
| ! | CATTTTGTTAGGGATTATGA+AGG | - | chr6_2:55566660-55566679 | Msa0920480:intron | 30.0% |
| AAAATAAGCCTAATCCAAAC+GGG | + | chr6_2:55567092-55567111 | None:intergenic | 30.0% | |
| CAAAATAAGCCTAATCCAAA+CGG | + | chr6_2:55567093-55567112 | None:intergenic | 30.0% | |
| CAAAAATAAGCCGATACAAA+TGG | - | chr6_2:55567269-55567288 | Msa0920480:intron | 30.0% | |
| AAACCATTTCCCATTTGTAT+CGG | + | chr6_2:55567282-55567301 | None:intergenic | 30.0% | |
| CCTAAAAAAAGTTGTAACAC+AGG | + | chr6_2:55567323-55567342 | None:intergenic | 30.0% | |
| !!! | CCTGTGTTACAACTTTTTTT+AGG | - | chr6_2:55567320-55567339 | Msa0920480:intron | 30.0% |
| ! | TTTTATATTCGGGAACAAAC+GGG | - | chr6_2:55567594-55567613 | Msa0920480:intron | 30.0% |
| !!! | CTGCTTAAACCTGAATTTTT+TGG | - | chr6_2:55567817-55567836 | Msa0920480:intron | 30.0% |
| AATTCAATATCGTGTAGTGA+AGG | - | chr6_2:55568024-55568043 | Msa0920480:intron | 30.0% | |
| AATACAACCGCATAGAAAAA+CGG | + | chr6_2:55568157-55568176 | None:intergenic | 30.0% | |
| TCAATAGTGATAAGATGACT+TGG | + | chr6_2:55568370-55568389 | None:intergenic | 30.0% | |
| CTCTTGTGTAAAAAGTCTAA+AGG | + | chr6_2:55568638-55568657 | None:intergenic | 30.0% | |
| ACAAGAGTTTCATAAATGGT+GGG | - | chr6_2:55568651-55568670 | Msa0920480:intron | 30.0% | |
| TGTGAATTTCTACTTTCAAG+AGG | + | chr6_2:55568731-55568750 | None:intergenic | 30.0% | |
| !! | TGTTGGTTTGACAAAAACAA+GGG | + | chr6_2:55568862-55568881 | None:intergenic | 30.0% |
| AATTTGACATCTGTCTTTGT+TGG | - | chr6_2:55568947-55568966 | Msa0920480:CDS | 30.0% | |
| !!! | TAGTTTTTAATTTTGCGTGG+TGG | - | chr6_2:55568992-55569011 | Msa0920480:intron | 30.0% |
| GATATCATACAAGTTACATC+AGG | - | chr6_2:55569105-55569124 | Msa0920480:intron | 30.0% | |
| ! | GAGAAAAGTGTGAGTAAAAA+GGG | - | chr6_2:55569230-55569249 | Msa0920480:intron | 30.0% |
| ! | CAATCTAAGGTTTGAGAATA+GGG | + | chr6_2:55569345-55569364 | None:intergenic | 30.0% |
| ! | ACAATCTAAGGTTTGAGAAT+AGG | + | chr6_2:55569346-55569365 | None:intergenic | 30.0% |
| GATTTCTTAAGCACAATCTA+AGG | + | chr6_2:55569358-55569377 | None:intergenic | 30.0% | |
| ATACTCATTCACTTTCTTCA+AGG | - | chr6_2:55569454-55569473 | Msa0920480:intron | 30.0% | |
| GATAAATGATATTCAGAAGG+AGG | + | chr6_2:55569621-55569640 | None:intergenic | 30.0% | |
| CCTGATAAATGATATTCAGA+AGG | + | chr6_2:55569624-55569643 | None:intergenic | 30.0% | |
| CCTTCTGAATATCATTTATC+AGG | - | chr6_2:55569621-55569640 | Msa0920480:intron | 30.0% | |
| GAATATCATTTATCAGGTGA+TGG | - | chr6_2:55569627-55569646 | Msa0920480:intron | 30.0% | |
| ATGCAGGTAATAATACTTTG+TGG | - | chr6_2:55569734-55569753 | Msa0920480:intron | 30.0% | |
| ATTGAGTATACTGCTTGATA+TGG | + | chr6_2:55569789-55569808 | None:intergenic | 30.0% | |
| AAACTGAAGTAGCAAAACAT+CGG | + | chr6_2:55569856-55569875 | None:intergenic | 30.0% | |
| TATCATGCAAATAAAGTCGT+GGG | + | chr6_2:55569883-55569902 | None:intergenic | 30.0% | |
| ATATCATGCAAATAAAGTCG+TGG | + | chr6_2:55569884-55569903 | None:intergenic | 30.0% | |
| ! | GACTTTATTTGCATGATATC+TGG | - | chr6_2:55569885-55569904 | Msa0920480:intron | 30.0% |
| CACAAAACATAAAACTAGGA+TGG | + | chr6_2:55569920-55569939 | None:intergenic | 30.0% | |
| !!! | CATCCTAGTTTTATGTTTTG+TGG | - | chr6_2:55569918-55569937 | Msa0920480:intron | 30.0% |
| ! | TTAATTTTATCAACCCCTCA+GGG | + | chr6_2:55569946-55569965 | None:intergenic | 30.0% |
| CAACTTTCATATCGGAAAAA+TGG | + | chr6_2:55569969-55569988 | None:intergenic | 30.0% | |
| ACCACTAACAACTTTCATAT+CGG | + | chr6_2:55569977-55569996 | None:intergenic | 30.0% | |
| !! | GTTTTCAGGGTTTGAATTTT+AGG | - | chr6_2:55570004-55570023 | Msa0920480:intron | 30.0% |
| AAGTGAGCTTAAGATATACA+AGG | + | chr6_2:55570094-55570113 | None:intergenic | 30.0% | |
| TTTAACAACACTATGGAGAT+GGG | + | chr6_2:55570148-55570167 | None:intergenic | 30.0% | |
| ATTTAACAACACTATGGAGA+TGG | + | chr6_2:55570149-55570168 | None:intergenic | 30.0% | |
| TGCAATAAACAAACATACAG+GGG | + | chr6_2:55570360-55570379 | None:intergenic | 30.0% | |
| AAAAACCAAATGACAGTGTT+TGG | + | chr6_2:55570445-55570464 | None:intergenic | 30.0% | |
| AAAATACACCTATGAAGCAA+AGG | + | chr6_2:55570708-55570727 | None:intergenic | 30.0% | |
| ! | GATTTAATTTCACAGCTCAA+AGG | - | chr6_2:55570764-55570783 | Msa0920480:intron | 30.0% |
| ! | TTACTTGCTAGTGAATTCAA+AGG | - | chr6_2:55570790-55570809 | Msa0920480:intron | 30.0% |
| ! | CAAGGTGCTTATTGTTAAAA+AGG | - | chr6_2:55570822-55570841 | Msa0920480:intron | 30.0% |
| ! | AACTACACTTTTGATGCTTT+GGG | + | chr6_2:55571496-55571515 | None:intergenic | 30.0% |
| ! | AAACTACACTTTTGATGCTT+TGG | + | chr6_2:55571497-55571516 | None:intergenic | 30.0% |
| !!! | AGAACGTGTTTCCCATTTTT+TGG | + | chr6_2:55566159-55566178 | None:intergenic | 35.0% |
| AACACGTTCTGTTTATTCTG+TGG | - | chr6_2:55566169-55566188 | Msa0920480:three_prime_UTR | 35.0% | |
| GGGTTAAAGATTTGAAAACC+AGG | + | chr6_2:55566259-55566278 | None:intergenic | 35.0% | |
| ! | CAAATCTTTAACCCTTTTGC+TGG | - | chr6_2:55566265-55566284 | Msa0920480:three_prime_UTR | 35.0% |
| AACATCAAGAGAAGCAATTC+TGG | + | chr6_2:55566317-55566336 | None:intergenic | 35.0% | |
| TTTGTGTCTGTAAATGATCC+TGG | - | chr6_2:55566542-55566561 | Msa0920480:CDS | 35.0% | |
| TTGGTATTTCGTAGTTTGGT+TGG | - | chr6_2:55566596-55566615 | Msa0920480:CDS | 35.0% | |
| TGGTATTTCGTAGTTTGGTT+GGG | - | chr6_2:55566597-55566616 | Msa0920480:CDS | 35.0% | |
| !! | GGTCTCTGAGATATTGAATT+TGG | - | chr6_2:55567768-55567787 | Msa0920480:CDS | 35.0% |
| !! | ATCCAGGCTTATGTTTTTGA+TGG | - | chr6_2:55568094-55568113 | Msa0920480:intron | 35.0% |
| AACCATCAAAAACATAAGCC+TGG | + | chr6_2:55568099-55568118 | None:intergenic | 35.0% | |
| CGTCAATGATAAACTCAACT+TGG | + | chr6_2:55568305-55568324 | None:intergenic | 35.0% | |
| TATGTTGTTCGTTGTTGTAG+TGG | - | chr6_2:55568428-55568447 | Msa0920480:intron | 35.0% | |
| !! | TCATCTTTGGAACAATAGCA+CGG | + | chr6_2:55568455-55568474 | None:intergenic | 35.0% |
| AGCTCATCCAAATTCATCTT+TGG | + | chr6_2:55568468-55568487 | None:intergenic | 35.0% | |
| CACAAGAGTTTCATAAATGG+TGG | - | chr6_2:55568650-55568669 | Msa0920480:intron | 35.0% | |
| ! | GGTTGTGATAGTGACTTTAT+CGG | - | chr6_2:55568768-55568787 | Msa0920480:intron | 35.0% |
| ! | CGAGTATAAGTAGAGTTTTG+AGG | - | chr6_2:55568820-55568839 | Msa0920480:intron | 35.0% |
| !! | GTGTTGGTTTGACAAAAACA+AGG | + | chr6_2:55568863-55568882 | None:intergenic | 35.0% |
| TACAGTAATTTGATCGGTGT+TGG | + | chr6_2:55568879-55568898 | None:intergenic | 35.0% | |
| CTGTATGAATATCAGCTATG+AGG | - | chr6_2:55568894-55568913 | Msa0920480:intron | 35.0% | |
| ATTCCAAAAGTAGAAGCTCA+TGG | + | chr6_2:55568930-55568949 | None:intergenic | 35.0% | |
| !!! | ATTTTAGGACGAGAAAGACA+TGG | - | chr6_2:55569145-55569164 | Msa0920480:intron | 35.0% |
| AGAGAAGGGTGAGTAAAATA+AGG | - | chr6_2:55569195-55569214 | Msa0920480:intron | 35.0% | |
| ! | GGAGAAAAGTGTGAGTAAAA+AGG | - | chr6_2:55569229-55569248 | Msa0920480:intron | 35.0% |
| GTGAGTAAAAAGGGATAAAG+AGG | - | chr6_2:55569239-55569258 | Msa0920480:intron | 35.0% | |
| GTAAATTAGGAGATTGGTAC+TGG | + | chr6_2:55569594-55569613 | None:intergenic | 35.0% | |
| TAGCATAGAACACATACTGA+TGG | - | chr6_2:55569663-55569682 | Msa0920480:intron | 35.0% | |
| ! | GACTGTTTCTTATCTTCCTA+TGG | - | chr6_2:55569763-55569782 | Msa0920480:intron | 35.0% |
| GTCCCACAAAACATAAAACT+AGG | + | chr6_2:55569924-55569943 | None:intergenic | 35.0% | |
| ! | GTTAATTTTATCAACCCCTC+AGG | + | chr6_2:55569947-55569966 | None:intergenic | 35.0% |
| TCCGATATGAAAGTTGTTAG+TGG | - | chr6_2:55569973-55569992 | Msa0920480:intron | 35.0% | |
| !! | ACATTGAAGGAGTTTTAACC+AGG | + | chr6_2:55570033-55570052 | None:intergenic | 35.0% |
| ATGTCCCTTAGTTTACCAAA+CGG | - | chr6_2:55570049-55570068 | Msa0920480:intron | 35.0% | |
| ACAATAACACTGTTGCATAG+TGG | - | chr6_2:55570264-55570283 | Msa0920480:intron | 35.0% | |
| TCTTAGTCAAGCTGCATAAA+GGG | + | chr6_2:55570391-55570410 | None:intergenic | 35.0% | |
| TAATGCCAAACACTGTCATT+TGG | - | chr6_2:55570437-55570456 | Msa0920480:intron | 35.0% | |
| GAGAGATAGAGATGAACAAA+TGG | - | chr6_2:55570508-55570527 | Msa0920480:intron | 35.0% | |
| TTCAGTGTAAATACATGTGC+CGG | + | chr6_2:55570627-55570646 | None:intergenic | 35.0% | |
| GTCAATATCCTTTGCTTCAT+AGG | - | chr6_2:55570697-55570716 | Msa0920480:intron | 35.0% | |
| ! | GAAGCCGAATCAAAGTTTTT+AGG | - | chr6_2:55570853-55570872 | Msa0920480:intron | 35.0% |
| CATCTTGCAATTCTCTAACA+AGG | - | chr6_2:55570930-55570949 | Msa0920480:intron | 35.0% | |
| CAATTCTCTAACAAGGTAGA+AGG | - | chr6_2:55570937-55570956 | Msa0920480:intron | 35.0% | |
| ! | ACCACAGTTTTTATACCTCA+TGG | - | chr6_2:55571045-55571064 | Msa0920480:intron | 35.0% |
| TCCATGAGGTATAAAAACTG+TGG | + | chr6_2:55571049-55571068 | None:intergenic | 35.0% | |
| ATGTCAAGGAATGTATAGCA+TGG | + | chr6_2:55571412-55571431 | None:intergenic | 35.0% | |
| TGTGTTGAACAATCAAGCGT+AGG | - | chr6_2:55566193-55566212 | Msa0920480:three_prime_UTR | 40.0% | |
| CGTAGGAATTGTTGAACAGT+GGG | - | chr6_2:55566210-55566229 | Msa0920480:three_prime_UTR | 40.0% | |
| GTAGGAATTGTTGAACAGTG+GGG | - | chr6_2:55566211-55566230 | Msa0920480:three_prime_UTR | 40.0% | |
| TTTCAAAGAGTTGCTCAACC+TGG | - | chr6_2:55566238-55566257 | Msa0920480:three_prime_UTR | 40.0% | |
| CAAGACATTCACCAGCAAAA+GGG | + | chr6_2:55566279-55566298 | None:intergenic | 40.0% | |
| AGACTGAACTCCAGATTACT+AGG | + | chr6_2:55566418-55566437 | None:intergenic | 40.0% | |
| CTGGTAATCTTGAGTTCGAT+CGG | - | chr6_2:55566561-55566580 | Msa0920480:CDS | 40.0% | |
| ATCTTGAGTTCGATCGGATT+TGG | - | chr6_2:55566567-55566586 | Msa0920480:CDS | 40.0% | |
| ! | CGATCGGATTTGGTTAAAGT+TGG | - | chr6_2:55566577-55566596 | Msa0920480:CDS | 40.0% |
| ACTGTAGCAAACAGACTTAC+TGG | + | chr6_2:55566919-55566938 | None:intergenic | 40.0% | |
| ! | AAATTTGTTTAGGGCCCGTT+TGG | - | chr6_2:55567075-55567094 | Msa0920480:intron | 40.0% |
| AAGCCGATACAAATGGGAAA+TGG | - | chr6_2:55567276-55567295 | Msa0920480:intron | 40.0% | |
| CAATGAACTCAATGAGAAGC+TGG | - | chr6_2:55567433-55567452 | Msa0920480:intron | 40.0% | |
| !!! | CTGGTTTTGATAGCTTCTCA+TGG | - | chr6_2:55567452-55567471 | Msa0920480:intron | 40.0% |
| !!! | GTGAGAGGTATTTTTGTGTC+TGG | - | chr6_2:55567966-55567985 | Msa0920480:intron | 40.0% |
| !!! | ATTTCGGCCGTTTTTCTATG+CGG | - | chr6_2:55568147-55568166 | Msa0920480:intron | 40.0% |
| CTCTTCAACCTTGTGAAACA+CGG | + | chr6_2:55568232-55568251 | None:intergenic | 40.0% | |
| CAGTTTCTCAAGAGGTTACT+CGG | + | chr6_2:55568266-55568285 | None:intergenic | 40.0% | |
| !! | CATCTTTGGAACAATAGCAC+GGG | + | chr6_2:55568454-55568473 | None:intergenic | 40.0% |
| GATGAGCTGTTTGAGCAAAA+AGG | - | chr6_2:55568480-55568499 | Msa0920480:intron | 40.0% | |
| AAGTTCTTCCATGACACCTT+TGG | + | chr6_2:55568514-55568533 | None:intergenic | 40.0% | |
| !! | AAAGGTGTCATGGAAGAACT+TGG | - | chr6_2:55568513-55568532 | Msa0920480:intron | 40.0% |
| TGTCATGGAAGAACTTGGAA+AGG | - | chr6_2:55568518-55568537 | Msa0920480:intron | 40.0% | |
| ! | GAACCATGAGCTTCTACTTT+TGG | - | chr6_2:55568924-55568943 | Msa0920480:CDS | 40.0% |
| AGTGTTTAGAGGAGAGAGAA+GGG | - | chr6_2:55569181-55569200 | Msa0920480:intron | 40.0% | |
| ! | TATCGAAGTTGCAATGGACT+TGG | + | chr6_2:55569380-55569399 | None:intergenic | 40.0% |
| AAGTCCATTGCAACTTCGAT+AGG | - | chr6_2:55569379-55569398 | Msa0920480:CDS | 40.0% | |
| ATAGCCTATCGAAGTTGCAA+TGG | + | chr6_2:55569386-55569405 | None:intergenic | 40.0% | |
| GGACGAGTAAATTAGGAGAT+TGG | + | chr6_2:55569600-55569619 | None:intergenic | 40.0% | |
| AGAAGGAGGACGAGTAAATT+AGG | + | chr6_2:55569607-55569626 | None:intergenic | 40.0% | |
| !! | TATCAGGTGATGGGAGAATA+TGG | - | chr6_2:55569637-55569656 | Msa0920480:intron | 40.0% |
| GCAATGAATGAGATCAATGC+AGG | - | chr6_2:55569718-55569737 | Msa0920480:intron | 40.0% | |
| ATACTGCTTGATATGGCCAT+AGG | + | chr6_2:55569782-55569801 | None:intergenic | 40.0% | |
| ATGCAAATAAAGTCGTGGGA+AGG | + | chr6_2:55569879-55569898 | None:intergenic | 40.0% | |
| TTGCATGATATCTGGTGAAG+TGG | - | chr6_2:55569893-55569912 | Msa0920480:intron | 40.0% | |
| TGCATGATATCTGGTGAAGT+GGG | - | chr6_2:55569894-55569913 | Msa0920480:intron | 40.0% | |
| !! | TTGAAGGAGTTTTAACCAGG+AGG | + | chr6_2:55570030-55570049 | None:intergenic | 40.0% |
| GGTAAACTAAGGGACATTGA+AGG | + | chr6_2:55570046-55570065 | None:intergenic | 40.0% | |
| TGTCCCTTAGTTTACCAAAC+GGG | - | chr6_2:55570050-55570069 | Msa0920480:intron | 40.0% | |
| ATGGGATAAACACATGTGCA+GGG | + | chr6_2:55570130-55570149 | None:intergenic | 40.0% | |
| ACATACAGGGGTTGCATATA+TGG | + | chr6_2:55570348-55570367 | None:intergenic | 40.0% | |
| CTCTTAGTCAAGCTGCATAA+AGG | + | chr6_2:55570392-55570411 | None:intergenic | 40.0% | |
| !! | TGAACAAATGGTGTCACACA+CGG | - | chr6_2:55570520-55570539 | Msa0920480:intron | 40.0% |
| !! | TCTTTGTAGCATCGACACTT+CGG | - | chr6_2:55570553-55570572 | Msa0920480:intron | 40.0% |
| GAAGCAAAGGATATTGACAC+CGG | + | chr6_2:55570695-55570714 | None:intergenic | 40.0% | |
| ATTCAAAGGAGAAGCAGACA+AGG | - | chr6_2:55570804-55570823 | Msa0920480:intron | 40.0% | |
| !! | GCCGAATCAAAGTTTTTAGG+CGG | - | chr6_2:55570856-55570875 | Msa0920480:intron | 40.0% |
| CCCGCCTAAAAACTTTGATT+CGG | + | chr6_2:55570860-55570879 | None:intergenic | 40.0% | |
| !! | CCGAATCAAAGTTTTTAGGC+GGG | - | chr6_2:55570857-55570876 | Msa0920480:intron | 40.0% |
| !! | CGAATCAAAGTTTTTAGGCG+GGG | - | chr6_2:55570858-55570877 | Msa0920480:intron | 40.0% |
| TTTGACACAATCAGAGACCT+TGG | - | chr6_2:55571006-55571025 | Msa0920480:intron | 40.0% | |
| ! | GTTTTTATACCTCATGGACC+TGG | - | chr6_2:55571051-55571070 | Msa0920480:intron | 40.0% |
| ATCGGTGATCAAATTCGCAA+CGG | - | chr6_2:55571087-55571106 | Msa0920480:intron | 40.0% | |
| TCAAATTCGCAACGGTATGA+TGG | - | chr6_2:55571095-55571114 | Msa0920480:CDS | 40.0% | |
| TCTTCTATCTCTCTCACACA+GGG | - | chr6_2:55571191-55571210 | Msa0920480:CDS | 40.0% | |
| CACGACTTGCATGAAAGACT+TGG | + | chr6_2:55565947-55565966 | None:intergenic | 45.0% | |
| GTCTTTCATGCAAGTCGTGT+AGG | - | chr6_2:55565948-55565967 | Msa0920480:three_prime_UTR | 45.0% | |
| GGTGTGATGTGAGTGTATTG+TGG | + | chr6_2:55565982-55566001 | None:intergenic | 45.0% | |
| GCGTAGGAATTGTTGAACAG+TGG | - | chr6_2:55566209-55566228 | Msa0920480:three_prime_UTR | 45.0% | |
| GCAAGACATTCACCAGCAAA+AGG | + | chr6_2:55566280-55566299 | None:intergenic | 45.0% | |
| TTTGCTGGTGAATGTCTTGC+TGG | - | chr6_2:55566280-55566299 | Msa0920480:exon | 45.0% | |
| CGATCGAACTCAAGATTACC+AGG | + | chr6_2:55566563-55566582 | None:intergenic | 45.0% | |
| !! | GTATTTTTGTGTCTGGCTGC+AGG | - | chr6_2:55567973-55567992 | Msa0920480:intron | 45.0% |
| TTATGAGTTGCAAAACCCGC+AGG | - | chr6_2:55568066-55568085 | Msa0920480:intron | 45.0% | |
| ATCTCGAACCGTGTTTCACA+AGG | - | chr6_2:55568221-55568240 | Msa0920480:intron | 45.0% | |
| CGAGTAACCTCTTGAGAAAC+TGG | - | chr6_2:55568264-55568283 | Msa0920480:intron | 45.0% | |
| CAACAAGCCAGTTTCTCAAG+AGG | + | chr6_2:55568274-55568293 | None:intergenic | 45.0% | |
| GCTGTTTGAGCAAAAAGGTG+AGG | - | chr6_2:55568485-55568504 | Msa0920480:intron | 45.0% | |
| CAAAAAGGTGAGGTTGCCAA+AGG | - | chr6_2:55568495-55568514 | Msa0920480:intron | 45.0% | |
| !! | ATAAATGGTGGGTTCTGCTG+TGG | - | chr6_2:55568662-55568681 | Msa0920480:intron | 45.0% |
| CACTACGGACAACCTGTTAA+GGG | + | chr6_2:55568691-55568710 | None:intergenic | 45.0% | |
| CACAGTCTTGCTCATGCTTA+CGG | - | chr6_2:55568747-55568766 | Msa0920480:intron | 45.0% | |
| AGGACGAGAAAGACATGGTA+TGG | - | chr6_2:55569150-55569169 | Msa0920480:intron | 45.0% | |
| TCTCTCCTCTAAACACTCAG+AGG | + | chr6_2:55569178-55569197 | None:intergenic | 45.0% | |
| GAGTGTTTAGAGGAGAGAGA+AGG | - | chr6_2:55569180-55569199 | Msa0920480:intron | 45.0% | |
| CTAACCTGAGTCAAGCTAGA+TGG | - | chr6_2:55569263-55569282 | Msa0920480:intron | 45.0% | |
| TTATCCCTGATCCTTCTGTG+CGG | - | chr6_2:55569692-55569711 | Msa0920480:intron | 45.0% | |
| ! | TTATGTTTTGTGGGACCCTG+AGG | - | chr6_2:55569928-55569947 | Msa0920480:intron | 45.0% |
| ! | TATGTTTTGTGGGACCCTGA+GGG | - | chr6_2:55569929-55569948 | Msa0920480:intron | 45.0% |
| ! | GGTTTGAATTTTAGGCCTCC+TGG | - | chr6_2:55570012-55570031 | Msa0920480:intron | 45.0% |
| CAGCCCGTTTGGTAAACTAA+GGG | + | chr6_2:55570056-55570075 | None:intergenic | 45.0% | |
| ACAGCCCGTTTGGTAAACTA+AGG | + | chr6_2:55570057-55570076 | None:intergenic | 45.0% | |
| TGGGATAAACACATGTGCAG+GGG | + | chr6_2:55570129-55570148 | None:intergenic | 45.0% | |
| GATGGGATAAACACATGTGC+AGG | + | chr6_2:55570131-55570150 | None:intergenic | 45.0% | |
| TGTCAGACGATGACATGTGT+CGG | + | chr6_2:55570599-55570618 | None:intergenic | 45.0% | |
| !! | TCAAAGTTTTTAGGCGGGGT+TGG | - | chr6_2:55570862-55570881 | Msa0920480:intron | 45.0% |
| AACTTCAGCGAAGGAAGTGA+TGG | - | chr6_2:55570960-55570979 | Msa0920480:intron | 45.0% | |
| GATCACCGATATCCCTAACA+TGG | + | chr6_2:55571077-55571096 | None:intergenic | 45.0% | |
| GTGAGAGAGATAGAAGACAC+AGG | + | chr6_2:55571188-55571207 | None:intergenic | 45.0% | |
| GTCTTCTATCTCTCTCACAC+AGG | - | chr6_2:55571190-55571209 | Msa0920480:CDS | 45.0% | |
| ! | GTTTAGGGCCCGTTTGGATT+AGG | - | chr6_2:55567081-55567100 | Msa0920480:intron | 50.0% |
| TAAGCCTGGATCTGTTCCTG+CGG | + | chr6_2:55568085-55568104 | None:intergenic | 50.0% | |
| !! | TGAGGTTGCCAAAGGTGTCA+TGG | - | chr6_2:55568503-55568522 | Msa0920480:intron | 50.0% |
| CCACTACGGACAACCTGTTA+AGG | + | chr6_2:55568692-55568711 | None:intergenic | 50.0% | |
| CCTTAACAGGTTGTCCGTAG+TGG | - | chr6_2:55568689-55568708 | Msa0920480:intron | 50.0% | |
| TGGTGCCTCTGAGTGTTTAG+AGG | - | chr6_2:55569170-55569189 | Msa0920480:intron | 50.0% | |
| ! | GGATCCATCTAGCTTGACTC+AGG | + | chr6_2:55569270-55569289 | None:intergenic | 50.0% |
| TTCATTGCTCTCCGCACAGA+AGG | + | chr6_2:55569706-55569725 | None:intergenic | 50.0% | |
| ! | ATGTTTTGTGGGACCCTGAG+GGG | - | chr6_2:55569930-55569949 | Msa0920480:intron | 50.0% |
| !! | TACCAAACGGGCTGTCTACT+TGG | - | chr6_2:55570062-55570081 | Msa0920480:intron | 50.0% |
| !! | ACCAAACGGGCTGTCTACTT+GGG | - | chr6_2:55570063-55570082 | Msa0920480:intron | 50.0% |
| GTCATCGTCTGACATGAGAC+CGG | - | chr6_2:55570605-55570624 | Msa0920480:intron | 50.0% | |
| GGTAGAAGGAACTTCAGCGA+AGG | - | chr6_2:55570951-55570970 | Msa0920480:intron | 50.0% | |
| TCATGGACCTGGCCATGTTA+GGG | - | chr6_2:55571062-55571081 | Msa0920480:intron | 50.0% | |
| CCTGGCCATGTTAGGGATAT+CGG | - | chr6_2:55571069-55571088 | Msa0920480:intron | 50.0% | |
| AAACCCGCAGGAACAGATCC+AGG | - | chr6_2:55568078-55568097 | Msa0920480:intron | 55.0% | |
| AAGCCTGGATCTGTTCCTGC+GGG | + | chr6_2:55568084-55568103 | None:intergenic | 55.0% | |
| CTGCTGTGGACTCCCTTAAC+AGG | - | chr6_2:55568676-55568695 | Msa0920480:intron | 55.0% | |
| CTCTCCGCACAGAAGGATCA+GGG | + | chr6_2:55569699-55569718 | None:intergenic | 55.0% | |
| TCCCAAGTAGACAGCCCGTT+TGG | + | chr6_2:55570067-55570086 | None:intergenic | 55.0% | |
| ! | GCATCGACACTTCGGATCGA+AGG | - | chr6_2:55570561-55570580 | Msa0920480:intron | 55.0% |
| ! | CTTCGGATCGAAGGCATGTC+CGG | - | chr6_2:55570570-55570589 | Msa0920480:intron | 55.0% |
| CGATGACATGTGTCGGACAC+CGG | + | chr6_2:55570592-55570611 | None:intergenic | 55.0% | |
| TGTGTCCACGTCTCAGTGTC+CGG | - | chr6_2:55570673-55570692 | Msa0920480:intron | 55.0% | |
| CTAACATGGCCAGGTCCATG+AGG | + | chr6_2:55571063-55571082 | None:intergenic | 55.0% | |
| CTCATGGACCTGGCCATGTT+AGG | - | chr6_2:55571061-55571080 | Msa0920480:intron | 55.0% | |
| CCGATATCCCTAACATGGCC+AGG | + | chr6_2:55571072-55571091 | None:intergenic | 55.0% | |
| GCTCTCCGCACAGAAGGATC+AGG | + | chr6_2:55569700-55569719 | None:intergenic | 60.0% | |
| TGACACCGGACACTGAGACG+TGG | + | chr6_2:55570681-55570700 | None:intergenic | 60.0% | |
| !! | TAGGCGGGGTTGGTGTAGCA+AGG | - | chr6_2:55570872-55570891 | Msa0920480:intron | 60.0% |
| !! | GGGTTGGTGTAGCAAGGCAG+AGG | - | chr6_2:55570878-55570897 | Msa0920480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 55565907 | 55571544 | 55565907 | ID=Msa0920480;Name=Msa0920480 |
| chr6_2 | mRNA | 55565907 | 55571544 | 55565907 | ID=Msa0920480-mRNA-1;Parent=Msa0920480;Name=Msa0920480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=256|1|1|1|1|1|5|392|292 |
| chr6_2 | exon | 55565907 | 55566672 | 55565907 | ID=Msa0920480-mRNA-1:exon:8263;Parent=Msa0920480-mRNA-1 |
| chr6_2 | exon | 55567712 | 55567808 | 55567712 | ID=Msa0920480-mRNA-1:exon:8262;Parent=Msa0920480-mRNA-1 |
| chr6_2 | exon | 55568912 | 55569003 | 55568912 | ID=Msa0920480-mRNA-1:exon:8261;Parent=Msa0920480-mRNA-1 |
| chr6_2 | exon | 55569336 | 55569456 | 55569336 | ID=Msa0920480-mRNA-1:exon:8260;Parent=Msa0920480-mRNA-1 |
| chr6_2 | exon | 55571094 | 55571544 | 55571094 | ID=Msa0920480-mRNA-1:exon:8259;Parent=Msa0920480-mRNA-1 |
| chr6_2 | five_prime_UTR | 55571289 | 55571544 | 55571289 | ID=Msa0920480-mRNA-1:five_prime_utr;Parent=Msa0920480-mRNA-1 |
| chr6_2 | CDS | 55571094 | 55571288 | 55571094 | ID=Msa0920480-mRNA-1:cds;Parent=Msa0920480-mRNA-1 |
| chr6_2 | CDS | 55569336 | 55569456 | 55569336 | ID=Msa0920480-mRNA-1:cds;Parent=Msa0920480-mRNA-1 |
| chr6_2 | CDS | 55568912 | 55569003 | 55568912 | ID=Msa0920480-mRNA-1:cds;Parent=Msa0920480-mRNA-1 |
| chr6_2 | CDS | 55567712 | 55567808 | 55567712 | ID=Msa0920480-mRNA-1:cds;Parent=Msa0920480-mRNA-1 |
| chr6_2 | CDS | 55566299 | 55566672 | 55566299 | ID=Msa0920480-mRNA-1:cds;Parent=Msa0920480-mRNA-1 |
| chr6_2 | three_prime_UTR | 55565907 | 55566298 | 55565907 | ID=Msa0920480-mRNA-1:three_prime_utr;Parent=Msa0920480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
