Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894980 | XP_003619851.3 | 93.878 | 441 | 15 | 1 | 1 | 441 | 1 | 429 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894980 | sp|Q9LVI4|TIF6B_ARATH | 38.609 | 417 | 157 | 18 | 1 | 403 | 1 | 332 | 8.76e-52 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894980 | A0A396HFY8 | 93.878 | 441 | 15 | 1 | 1 | 441 | 1 | 429 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0894980 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0894980 | Msa0948700 | 0.831720 | 1.422332e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894980 | MtrunA17_Chr6g0478581 | 93.878 | 441 | 15 | 1 | 1 | 441 | 1 | 429 | 0.0 | 838 |
| Msa0894980 | MtrunA17_Chr1g0161031 | 30.093 | 432 | 180 | 16 | 1 | 406 | 1 | 336 | 1.44e-29 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894980 | AT3G17860.1 | 38.609 | 417 | 157 | 18 | 1 | 403 | 1 | 332 | 8.91e-53 | 181 |
| Msa0894980 | AT3G17860.2 | 38.710 | 372 | 142 | 16 | 46 | 403 | 20 | 319 | 1.04e-44 | 159 |
| Msa0894980 | AT3G17860.3 | 38.544 | 371 | 142 | 16 | 47 | 403 | 1 | 299 | 3.21e-44 | 157 |
| Msa0894980 | AT3G17860.4 | 38.544 | 371 | 142 | 16 | 47 | 403 | 1 | 299 | 3.21e-44 | 157 |
| Msa0894980 | AT1G48500.1 | 33.019 | 424 | 139 | 18 | 1 | 408 | 1 | 295 | 6.04e-36 | 135 |
| Msa0894980 | AT1G48500.2 | 32.593 | 405 | 129 | 17 | 1 | 390 | 1 | 276 | 3.40e-31 | 121 |
| Msa0894980 | AT1G48500.3 | 33.148 | 359 | 111 | 16 | 47 | 390 | 2 | 246 | 8.82e-27 | 108 |
| Msa0894980 | AT1G70700.2 | 41.593 | 113 | 58 | 4 | 137 | 249 | 58 | 162 | 2.87e-12 | 67.0 |
| Msa0894980 | AT1G70700.1 | 41.593 | 113 | 58 | 4 | 137 | 249 | 58 | 162 | 3.99e-12 | 66.6 |
| Msa0894980 | AT1G70700.3 | 41.593 | 113 | 58 | 4 | 137 | 249 | 58 | 162 | 6.22e-12 | 66.2 |
Find 104 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATACATGTTCTTCTTAA+AGG | 0.090775 | 6_1:+81598327 | None:intergenic |
| CTTGTTTCCTACTTGCTTTA+TGG | 0.147271 | 6_1:+81600258 | None:intergenic |
| TGTTCTTCTTAAAGGCAAAT+TGG | 0.268291 | 6_1:+81598335 | None:intergenic |
| CCTATTGTTGCTACTTCTAT+AGG | 0.270531 | 6_1:-81599150 | Msa0894980:CDS |
| GTCTAATCATAAATCATTCT+TGG | 0.289760 | 6_1:-81601186 | Msa0894980:CDS |
| CAATCTAATCATGTTATTAC+TGG | 0.306462 | 6_1:-81600151 | Msa0894980:CDS |
| TTTGATGCAGTTAGGAGTTC+AGG | 0.316880 | 6_1:-81601359 | Msa0894980:CDS |
| GTTACAAACTCACAAACTTT+TGG | 0.317063 | 6_1:-81600109 | Msa0894980:CDS |
| CAATTCTTTAATTTGATCAT+TGG | 0.333125 | 6_1:-81598265 | Msa0894980:three_prime_UTR |
| AATCTCTATTCCTTCCAAAA+AGG | 0.344054 | 6_1:-81599481 | Msa0894980:CDS |
| GTTGGAAGCATCTTCTTTCA+TGG | 0.359919 | 6_1:+81604823 | None:intergenic |
| AGTTTCTCCATTGATTTCTC+TGG | 0.361158 | 6_1:-81598378 | Msa0894980:CDS |
| TTTGATGGAAGAACAGATAA+AGG | 0.367261 | 6_1:+81600067 | None:intergenic |
| GTCACAATAATAAGATCTTT+AGG | 0.396082 | 6_1:-81599207 | Msa0894980:CDS |
| GCTCAGTTGACCATATTCTA+TGG | 0.396208 | 6_1:-81599746 | Msa0894980:CDS |
| AACTGTACCACCATAGAATA+TGG | 0.403758 | 6_1:+81599736 | None:intergenic |
| AGGTGTAGTACCATTGGATT+TGG | 0.407015 | 6_1:+81599769 | None:intergenic |
| AAATGCCCCTACCAACCATT+TGG | 0.408061 | 6_1:-81599178 | Msa0894980:CDS |
| TCTGATCCAGTGCTGCATTC+AGG | 0.408286 | 6_1:+81598408 | None:intergenic |
| GTTGCTACTTGAACCTCCCT+TGG | 0.419319 | 6_1:+81599236 | None:intergenic |
| TTATTCTTTCTGCAACTTTG+AGG | 0.420744 | 6_1:-81604933 | Msa0894980:five_prime_UTR |
| CCTATAGAAGTAGCAACAAT+AGG | 0.423632 | 6_1:+81599150 | None:intergenic |
| TTCATAAATTTGATGCAGTT+AGG | 0.431010 | 6_1:-81601367 | Msa0894980:CDS |
| CAGTAATAACATGATTAGAT+TGG | 0.431253 | 6_1:+81600152 | None:intergenic |
| TTATCTGTTCTTCCATCAAA+AGG | 0.431556 | 6_1:-81600064 | Msa0894980:CDS |
| TGAGAGGACTTGGCAATTGA+AGG | 0.441352 | 6_1:+81599327 | None:intergenic |
| GAAGTCATTGGGAGAGAACT+TGG | 0.446941 | 6_1:+81599276 | None:intergenic |
| GAACTTGCATGAGAAGTCAT+TGG | 0.447319 | 6_1:+81599264 | None:intergenic |
| ATCATGTTACTAGCTGGAAA+TGG | 0.450451 | 6_1:-81599522 | Msa0894980:CDS |
| GCCTTTAAGAAGAACATGTA+TGG | 0.452229 | 6_1:-81598328 | Msa0894980:CDS |
| CGCGAAAAGCATCGCTGACT+CGG | 0.452418 | 6_1:-81598815 | Msa0894980:CDS |
| GCTTGGCAATGGTGAGGGAT+AGG | 0.452994 | 6_1:+81599437 | None:intergenic |
| TAGGTCATTGTGAGAGGACT+TGG | 0.454376 | 6_1:+81599317 | None:intergenic |
| ACAGAGAAAAGTGAAGTGTT+AGG | 0.455992 | 6_1:+81604979 | None:intergenic |
| TAGAATATGGTCAACTGAGC+AGG | 0.462120 | 6_1:+81599749 | None:intergenic |
| TTGCTACTTGAACCTCCCTT+GGG | 0.466052 | 6_1:+81599237 | None:intergenic |
| GAGGTCATTGGAAGAGGGCT+TGG | 0.466655 | 6_1:+81599420 | None:intergenic |
| GTACTTGCATGAGAGGTCAT+TGG | 0.470357 | 6_1:+81599408 | None:intergenic |
| TCTAATCATAAATCATTCTT+GGG | 0.475638 | 6_1:-81601185 | Msa0894980:CDS |
| ATGGATCCAGTAGCTTCATC+TGG | 0.480372 | 6_1:-81601242 | Msa0894980:CDS |
| AGGAATTCTCTTTCCATATG+TGG | 0.481576 | 6_1:+81604878 | None:intergenic |
| AACTTGCATGAGAAGTCATT+GGG | 0.486290 | 6_1:+81599265 | None:intergenic |
| ATATATCCAGATGAAGCTAC+TGG | 0.486559 | 6_1:+81601236 | None:intergenic |
| TTGCTACTTGAACCTCCCCT+TGG | 0.487948 | 6_1:+81599381 | None:intergenic |
| AGAATAATACTCATGAAGAT+AGG | 0.490063 | 6_1:-81601280 | Msa0894980:CDS |
| CTTGGCAATGGTGAGGGATA+GGG | 0.490715 | 6_1:+81599438 | None:intergenic |
| TTCTTGAATGACATGAATTG+AGG | 0.493289 | 6_1:+81601299 | None:intergenic |
| CTGAGCAGGTGTAGTACCAT+TGG | 0.495191 | 6_1:+81599763 | None:intergenic |
| GAGATTCCAAATGGTTGGTA+GGG | 0.495452 | 6_1:+81599172 | None:intergenic |
| GCATGAGAGGTCATTGGAAG+AGG | 0.495990 | 6_1:+81599414 | None:intergenic |
| CCATCAAAAGGTCCCATAGT+TGG | 0.499185 | 6_1:-81600052 | Msa0894980:CDS |
| TAGGTCAGTAGAGCCAACTA+TGG | 0.501275 | 6_1:+81600039 | None:intergenic |
| GTCGCAATAATAAGATCCTT+AGG | 0.504594 | 6_1:-81599351 | Msa0894980:CDS |
| ATCATTCTTGGGTGTGACAC+AGG | 0.505809 | 6_1:-81601174 | Msa0894980:intron |
| CAACAATAGGAGATTCCAAA+TGG | 0.511822 | 6_1:+81599163 | None:intergenic |
| TAGGTCAAGAAACAGTGTTA+TGG | 0.516069 | 6_1:-81601261 | Msa0894980:CDS |
| AACAGATAAAGGTGTGGCAG+AGG | 0.516274 | 6_1:+81600078 | None:intergenic |
| AAAAGTGAAGTGTTAGGTTG+CGG | 0.516963 | 6_1:+81604985 | None:intergenic |
| AAGGCAATCATGTTACTAGC+TGG | 0.519440 | 6_1:-81599528 | Msa0894980:CDS |
| TCATGCAAGTTCTTATCCCA+AGG | 0.526316 | 6_1:-81599253 | Msa0894980:CDS |
| CTTCTTAAAGGCAAATTGGT+GGG | 0.529876 | 6_1:+81598339 | None:intergenic |
| GGAGATTCCAAATGGTTGGT+AGG | 0.530064 | 6_1:+81599171 | None:intergenic |
| TCTTCTTTCATGGTAGTCCA+TGG | 0.530904 | 6_1:+81604833 | None:intergenic |
| CTTGGCAATTGAAGGTCCTA+AGG | 0.532204 | 6_1:+81599335 | None:intergenic |
| AAAGCAAGAGAGTAGAAGAA+AGG | 0.533416 | 6_1:+81605017 | None:intergenic |
| AAATCACCTGAATGCAGCAC+TGG | 0.539481 | 6_1:-81598414 | Msa0894980:CDS |
| ACTTGAACCAGAGAAATCAA+TGG | 0.546674 | 6_1:+81598371 | None:intergenic |
| TGGTTGGTAGGGGCATTTGA+AGG | 0.547908 | 6_1:+81599183 | None:intergenic |
| GCAAAGGTGAGAGATGAGAT+AGG | 0.557521 | 6_1:+81599298 | None:intergenic |
| AGAGGGCTTGGCAATGGTGA+GGG | 0.558559 | 6_1:+81599432 | None:intergenic |
| TGGTTGAGTACTTGCATGAG+AGG | 0.558968 | 6_1:+81599401 | None:intergenic |
| TCTTCTTAAAGGCAAATTGG+TGG | 0.560082 | 6_1:+81598338 | None:intergenic |
| AATAGGAGATTCCAAATGGT+TGG | 0.560500 | 6_1:+81599167 | None:intergenic |
| CATGAGAGGTCATTGGAAGA+GGG | 0.576369 | 6_1:+81599415 | None:intergenic |
| CCTGGTTGAATCACATTGGT+AGG | 0.578004 | 6_1:+81599120 | None:intergenic |
| TGAATGACATGAATTGAGGA+AGG | 0.578633 | 6_1:+81601303 | None:intergenic |
| ATTGGAAGAGGGCTTGGCAA+TGG | 0.579330 | 6_1:+81599426 | None:intergenic |
| TAGTTGGCTCTACTGACCTA+AGG | 0.580437 | 6_1:-81600036 | Msa0894980:intron |
| ATGAGATAGGTCATTGTGAG+AGG | 0.585630 | 6_1:+81599311 | None:intergenic |
| AAGAGGGCTTGGCAATGGTG+AGG | 0.587772 | 6_1:+81599431 | None:intergenic |
| CATATGGAAAGAGAATTCCT+TGG | 0.590006 | 6_1:-81604875 | Msa0894980:CDS |
| CTTAAAGGCAAATTGGTGGG+TGG | 0.595542 | 6_1:+81598342 | None:intergenic |
| TCATGCAAGTACTCAACCAA+GGG | 0.597542 | 6_1:-81599397 | Msa0894980:CDS |
| AGGTCAGTAGAGCCAACTAT+GGG | 0.597778 | 6_1:+81600040 | None:intergenic |
| CCTACCAATGTGATTCAACC+AGG | 0.605618 | 6_1:-81599120 | Msa0894980:intron |
| AGATTCCAAATGGTTGGTAG+GGG | 0.605896 | 6_1:+81599173 | None:intergenic |
| TGTGCATCAGAACTTTGCAT+AGG | 0.606052 | 6_1:+81600217 | None:intergenic |
| CATGCAAGTTCTTATCCCAA+GGG | 0.608931 | 6_1:-81599252 | Msa0894980:CDS |
| TGATGACATCTCTCCTGAGA+AGG | 0.609439 | 6_1:-81599705 | Msa0894980:intron |
| CTCATGCAAGTACTCAACCA+AGG | 0.611643 | 6_1:-81599398 | Msa0894980:CDS |
| AGGAATTGTTCCAAATCCAA+TGG | 0.614409 | 6_1:-81599779 | Msa0894980:CDS |
| TATACCTGGTTGAATCACAT+TGG | 0.618427 | 6_1:+81599116 | None:intergenic |
| GCAATGGTGAGGGATAGGGC+TGG | 0.624372 | 6_1:+81599442 | None:intergenic |
| AATTTGGCCATAAAGCAAGT+AGG | 0.634556 | 6_1:-81600265 | Msa0894980:CDS |
| TGTTATTACTGGAATCAACA+TGG | 0.635983 | 6_1:-81600140 | Msa0894980:CDS |
| AAGCAAGTAGGAAACAAGCA+TGG | 0.639462 | 6_1:-81600253 | Msa0894980:CDS |
| GCAAGTTCTTATCCCAAGGG+AGG | 0.641995 | 6_1:-81599249 | Msa0894980:CDS |
| ATTGGGAGAGAACTTGGCAA+AGG | 0.651165 | 6_1:+81599282 | None:intergenic |
| CAGTTGACCATATTCTATGG+TGG | 0.670630 | 6_1:-81599743 | Msa0894980:CDS |
| TTAGGAGTTCAGGAATGCAG+TGG | 0.686957 | 6_1:-81601349 | Msa0894980:CDS |
| GCAAGTACTCAACCAAGGGG+AGG | 0.687330 | 6_1:-81599393 | Msa0894980:CDS |
| TCCAACAAACCAAAAGACCA+AGG | 0.694197 | 6_1:-81604806 | Msa0894980:intron |
| TGGAAGAACAGATAAAGGTG+TGG | 0.711636 | 6_1:+81600072 | None:intergenic |
| CATGCAAGTACTCAACCAAG+GGG | 0.756359 | 6_1:-81599396 | Msa0894980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr6_1:81599747-81599766 | Msa0894980:CDS | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr6_1:81599746-81599765 | Msa0894980:CDS | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr6_1:81599747-81599766 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr6_1:81599746-81599765 | None:intergenic | 0.0% |
| !! | AATTATAAATATATATAAAA+TGG | + | chr6_1:81603690-81603709 | None:intergenic | 0.0% |
| !! | GAAACAAAAAAAAAAAAAAA+AGG | + | chr6_1:81598535-81598554 | None:intergenic | 10.0% |
| !! | TATCATTAAATTAACAAAAA+CGG | - | chr6_1:81598616-81598635 | Msa0894980:intron | 10.0% |
| !! | ATTTCTCTAATAATAATATA+AGG | - | chr6_1:81598992-81599011 | Msa0894980:intron | 10.0% |
| !! | TAATTATATAATATACTAGA+TGG | + | chr6_1:81601315-81601334 | None:intergenic | 10.0% |
| !! | ATAATTATATTATATGATGA+TGG | - | chr6_1:81601328-81601347 | Msa0894980:CDS | 10.0% |
| !!! | ATATAATCTTTTAAAAAACA+TGG | - | chr6_1:81601521-81601540 | Msa0894980:intron | 10.0% |
| !!! | TTTATTTATTTATTTTGATG+GGG | - | chr6_1:81601644-81601663 | Msa0894980:intron | 10.0% |
| !!! | ATTTTTTTTAATGTTGATTT+AGG | - | chr6_1:81601876-81601895 | Msa0894980:intron | 10.0% |
| !! | AAATTGTTTCCTTATAAAAA+AGG | + | chr6_1:81598195-81598214 | None:intergenic | 15.0% |
| !! | ATTTATTATTTAATCATGCA+TGG | - | chr6_1:81598712-81598731 | Msa0894980:intron | 15.0% |
| !! | TTTATTATTTAATCATGCAT+GGG | - | chr6_1:81598713-81598732 | Msa0894980:intron | 15.0% |
| !!! | TAACTTGTAGATAATAATAA+AGG | - | chr6_1:81598805-81598824 | Msa0894980:CDS | 15.0% |
| !!! | GTAAATGCTTATATTTTTTT+TGG | - | chr6_1:81600487-81600506 | Msa0894980:intron | 15.0% |
| !!! | TTATATTTTTTTTGGTTAGA+AGG | - | chr6_1:81600495-81600514 | Msa0894980:intron | 15.0% |
| !! | ATGCAAAGTTATAAATATTT+AGG | - | chr6_1:81600625-81600644 | Msa0894980:intron | 15.0% |
| !!! | GTTTTTAAATATAAATATCG+TGG | - | chr6_1:81601008-81601027 | Msa0894980:intron | 15.0% |
| !! | CTTAGATTTAATATTAAACA+TGG | + | chr6_1:81601119-81601138 | None:intergenic | 15.0% |
| !! | CATGTTTAATATTAAATCTA+AGG | - | chr6_1:81601117-81601136 | Msa0894980:intron | 15.0% |
| !!! | AAATTGTTATTTATTTCTCA+AGG | + | chr6_1:81601174-81601193 | None:intergenic | 15.0% |
| !!! | TTATTAGTTTTTTGTTATCT+AGG | + | chr6_1:81601459-81601478 | None:intergenic | 15.0% |
| !!! | TTATTTTGATATATGAAACT+AGG | + | chr6_1:81602202-81602221 | None:intergenic | 15.0% |
| !!! | GAAAATCAATTTTATATCTT+TGG | - | chr6_1:81602581-81602600 | Msa0894980:intron | 15.0% |
| !! | TTTGTCAAAAAAAAAATCTT+TGG | - | chr6_1:81602611-81602630 | Msa0894980:intron | 15.0% |
| !!! | ATATATGCTAAAACTTTTTT+TGG | - | chr6_1:81602729-81602748 | Msa0894980:intron | 15.0% |
| !!! | TAATATTTTGTAGGAAAATT+TGG | - | chr6_1:81603002-81603021 | Msa0894980:intron | 15.0% |
| !!! | TTTTAAATTTATGATACCTT+AGG | + | chr6_1:81603266-81603285 | None:intergenic | 15.0% |
| !!! | TATAATGAAATTATCCTTTT+TGG | + | chr6_1:81603819-81603838 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTACTTACTT+AGG | - | chr6_1:81604813-81604832 | Msa0894980:CDS | 15.0% |
| !!! | TTTTTTTTTGTACTTACTTA+GGG | - | chr6_1:81604814-81604833 | Msa0894980:CDS | 15.0% |
| !! | TTATTATTTAATCATGCATG+GGG | - | chr6_1:81598714-81598733 | Msa0894980:intron | 20.0% |
| !!! | TTTTGAACTTATCCATTAAA+GGG | + | chr6_1:81599073-81599092 | None:intergenic | 20.0% |
| !!! | TTTTTGAACTTATCCATTAA+AGG | + | chr6_1:81599074-81599093 | None:intergenic | 20.0% |
| !! | TTAATTCAATTATGTAGCAT+AGG | + | chr6_1:81599175-81599194 | None:intergenic | 20.0% |
| !!! | AAAATTTTATATTAGCACAC+TGG | - | chr6_1:81599223-81599242 | Msa0894980:CDS | 20.0% |
| !!! | TTTTTTCTTTTTGATGCAAT+GGG | + | chr6_1:81599623-81599642 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTTTTGATGCAA+TGG | + | chr6_1:81599624-81599643 | None:intergenic | 20.0% |
| !!! | TTTTTTACAAGAAGTATAAC+TGG | - | chr6_1:81599720-81599739 | Msa0894980:CDS | 20.0% |
| !!! | TTATTTCCTTTTTATCGATT+AGG | - | chr6_1:81600078-81600097 | Msa0894980:CDS | 20.0% |
| !!! | AAATGAAATGGTTTTCTTTT+AGG | + | chr6_1:81600344-81600363 | None:intergenic | 20.0% |
| !!! | ATATATTTTATTGCATAACG+TGG | - | chr6_1:81600581-81600600 | Msa0894980:intron | 20.0% |
| !! | TTGAATAATAAGGGTAAATA+TGG | + | chr6_1:81600838-81600857 | None:intergenic | 20.0% |
| !!! | ACTTTTGCTTTGAATAATAA+GGG | + | chr6_1:81600847-81600866 | None:intergenic | 20.0% |
| !!! | AACTTTTGCTTTGAATAATA+AGG | + | chr6_1:81600848-81600867 | None:intergenic | 20.0% |
| !! | AAATAATACTATGCTTCATA+AGG | - | chr6_1:81601360-81601379 | Msa0894980:CDS | 20.0% |
| !! | AAACTAATAACAAAGTAACA+AGG | - | chr6_1:81601469-81601488 | Msa0894980:intron | 20.0% |
| !! | AATCTTTCAAATAACAAGTT+TGG | + | chr6_1:81601852-81601871 | None:intergenic | 20.0% |
| !! | CATAAAAATTTGGTTAAACA+TGG | + | chr6_1:81602295-81602314 | None:intergenic | 20.0% |
| !!! | AACCAAATTTTTATGATGTT+TGG | - | chr6_1:81602300-81602319 | Msa0894980:intron | 20.0% |
| !! | TACCAAACATCATAAAAATT+TGG | + | chr6_1:81602305-81602324 | None:intergenic | 20.0% |
| !! | CTGTATTGAGAAAAAAAAAT+TGG | - | chr6_1:81602326-81602345 | Msa0894980:intron | 20.0% |
| !!! | TAAAAATTGGTTCTAGTTAA+AGG | - | chr6_1:81602407-81602426 | Msa0894980:intron | 20.0% |
| !! | AGTCTAAAAAATAACTATAG+AGG | - | chr6_1:81602497-81602516 | Msa0894980:intron | 20.0% |
| !!! | AAAATTGATTTTCACCTATT+TGG | + | chr6_1:81602574-81602593 | None:intergenic | 20.0% |
| !!! | AAGTAAAATCCAAAAGTATA+TGG | + | chr6_1:81602670-81602689 | None:intergenic | 20.0% |
| !! | CCACAAATTATAAGATATAA+AGG | + | chr6_1:81602925-81602944 | None:intergenic | 20.0% |
| !! | CCTTTATATCTTATAATTTG+TGG | - | chr6_1:81602922-81602941 | Msa0894980:intron | 20.0% |
| !!! | TATATCTTATAATTTGTGGA+AGG | - | chr6_1:81602926-81602945 | Msa0894980:intron | 20.0% |
| !!! | TACTTCTGTTAATATTTTGT+AGG | - | chr6_1:81602993-81603012 | Msa0894980:intron | 20.0% |
| !!! | CTAATAAAACACATGTTTTT+TGG | - | chr6_1:81603349-81603368 | Msa0894980:intron | 20.0% |
| !! | AAAATTGTGATATGATATTG+TGG | - | chr6_1:81603421-81603440 | Msa0894980:intron | 20.0% |
| !!! | TGTTTTCTTTTGTTTTCTAT+AGG | - | chr6_1:81603478-81603497 | Msa0894980:intron | 20.0% |
| !!! | GATTTTTATTTTCTATGACT+AGG | - | chr6_1:81603730-81603749 | Msa0894980:intron | 20.0% |
| !! | TTCAACATTTGTGATATTTA+TGG | - | chr6_1:81604256-81604275 | Msa0894980:intron | 20.0% |
| !! | AAAAACATATTAAGTGATGA+AGG | + | chr6_1:81604538-81604557 | None:intergenic | 20.0% |
| !!! | TTATATAAGTTCTTTTGCAT+CGG | + | chr6_1:81604669-81604688 | None:intergenic | 20.0% |
| !!! | CAATTCTTTAATTTGATCAT+TGG | - | chr6_1:81605018-81605037 | Msa0894980:five_prime_UTR | 20.0% |
| !! | AGTAAAATACTACAAAAAAG+TGG | + | chr6_1:81605060-81605079 | None:intergenic | 20.0% |
| !! | ATAAAAAAGGTGCAAATTGT+TGG | + | chr6_1:81598182-81598201 | None:intergenic | 25.0% |
| !!! | CAATTTGCACCTTTTTTATA+AGG | - | chr6_1:81598183-81598202 | Msa0894980:three_prime_UTR | 25.0% |
| ! | GAAAATAGAAAAAGATACCT+TGG | + | chr6_1:81598497-81598516 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGAAAGCAGAAA+GGG | + | chr6_1:81598522-81598541 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGAAAGCAGAA+AGG | + | chr6_1:81598523-81598542 | None:intergenic | 25.0% |
| ! | GAAATACTAATAAGTGTCTT+TGG | + | chr6_1:81598977-81598996 | None:intergenic | 25.0% |
| ! | AATAATATAAGGAAGAACCA+TGG | - | chr6_1:81599003-81599022 | Msa0894980:intron | 25.0% |
| ! | GAAAAAAGCAAAAGAACATA+AGG | + | chr6_1:81599050-81599069 | None:intergenic | 25.0% |
| ! | TTTGAACTTATCCATTAAAG+GGG | + | chr6_1:81599072-81599091 | None:intergenic | 25.0% |
| ! | GGATAAGTTCAAAAATTCTA+AGG | - | chr6_1:81599079-81599098 | Msa0894980:intron | 25.0% |
| !! | TAAAGTATCTATCTATCACA+TGG | - | chr6_1:81599200-81599219 | Msa0894980:CDS | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr6_1:81599504-81599523 | None:intergenic | 25.0% |
| !! | AAAAAAGTGTGTTGTGATAT+AGG | - | chr6_1:81599638-81599657 | Msa0894980:intron | 25.0% |
| !! | AAAAAGTGTGTTGTGATATA+GGG | - | chr6_1:81599639-81599658 | Msa0894980:intron | 25.0% |
| ! | GGTCAAAATAAAATAGATGT+GGG | - | chr6_1:81599660-81599679 | Msa0894980:intron | 25.0% |
| ! | CATAAACCTAATCGATAAAA+AGG | + | chr6_1:81600087-81600106 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGGTTAGAAGGT+TGG | - | chr6_1:81600499-81600518 | Msa0894980:intron | 25.0% |
| ! | CATCAAAATCAAGAAAATGA+AGG | + | chr6_1:81600608-81600627 | None:intergenic | 25.0% |
| ! | ATAAATATTTAGGCTCTGTT+TGG | - | chr6_1:81600635-81600654 | Msa0894980:intron | 25.0% |
| ! | TTGACAAAAAAAGTTCTGTT+TGG | - | chr6_1:81600709-81600728 | Msa0894980:intron | 25.0% |
| !! | ATTAAATCTAAGGTCTAACA+TGG | - | chr6_1:81601127-81601146 | Msa0894980:intron | 25.0% |
| !! | TTAAATCTAAGGTCTAACAT+GGG | - | chr6_1:81601128-81601147 | Msa0894980:intron | 25.0% |
| !! | TTTTTATGTTAATGACAAGC+TGG | - | chr6_1:81601193-81601212 | Msa0894980:CDS | 25.0% |
| ! | AATATTCATTCACATACGAA+TGG | - | chr6_1:81601236-81601255 | Msa0894980:CDS | 25.0% |
| !! | TTTGTTATCTAGGTAATAAC+TGG | + | chr6_1:81601449-81601468 | None:intergenic | 25.0% |
| !!! | GCATCTTCTAAATAGTTTTA+TGG | - | chr6_1:81601578-81601597 | Msa0894980:intron | 25.0% |
| ! | TTCATAAATTTGATGCAGTT+AGG | - | chr6_1:81601916-81601935 | Msa0894980:intron | 25.0% |
| ! | AGAATAATACTCATGAAGAT+AGG | - | chr6_1:81602003-81602022 | Msa0894980:intron | 25.0% |
| !! | TTTAGAGTCCTTTGTATATT+TGG | - | chr6_1:81602176-81602195 | Msa0894980:intron | 25.0% |
| ! | TGGTTTCACAATCAATTATT+AGG | - | chr6_1:81602346-81602365 | Msa0894980:intron | 25.0% |
| !! | AGAACCAATTTTTATCACTA+TGG | + | chr6_1:81602401-81602420 | None:intergenic | 25.0% |
| !! | AAAATCCAAAAGTATATGGT+TGG | + | chr6_1:81602666-81602685 | None:intergenic | 25.0% |
| ! | CAGTAATAACATGATTAGAT+TGG | + | chr6_1:81603134-81603153 | None:intergenic | 25.0% |
| ! | CAATCTAATCATGTTATTAC+TGG | - | chr6_1:81603132-81603151 | Msa0894980:intron | 25.0% |
| !!! | ATGTGTTTTATTAGAAATGC+GGG | + | chr6_1:81603343-81603362 | None:intergenic | 25.0% |
| !!! | CATGTGTTTTATTAGAAATG+CGG | + | chr6_1:81603344-81603363 | None:intergenic | 25.0% |
| !! | ATGAAATTATCCTTTTTGGA+AGG | + | chr6_1:81603815-81603834 | None:intergenic | 25.0% |
| ! | GTCACAATAATAAGATCTTT+AGG | - | chr6_1:81604076-81604095 | Msa0894980:intron | 25.0% |
| !! | TTTTCTATACCTAATATCCA+AGG | + | chr6_1:81604564-81604583 | None:intergenic | 25.0% |
| ! | ATTAAACTCAATGACCAAAT+TGG | - | chr6_1:81604721-81604740 | Msa0894980:intron | 25.0% |
| !!! | GATTTTTTGCTCATATAGTA+TGG | + | chr6_1:81604854-81604873 | None:intergenic | 25.0% |
| TTATTCTTTCTGCAACTTTG+AGG | - | chr6_1:81598350-81598369 | Msa0894980:CDS | 30.0% | |
| !!! | TCTGATTTTTTCACCACATA+TGG | - | chr6_1:81598392-81598411 | Msa0894980:CDS | 30.0% |
| !! | AAAAAGATACCTTGGTCTTT+TGG | + | chr6_1:81598489-81598508 | None:intergenic | 30.0% |
| TGTTGGTGCAAAATATTTCA+TGG | + | chr6_1:81598557-81598576 | None:intergenic | 30.0% | |
| AAATTCATTCTTCTCTTCCA+TGG | + | chr6_1:81599023-81599042 | None:intergenic | 30.0% | |
| !!! | TTTGCTTTTTTCCCCTTTAA+TGG | - | chr6_1:81599058-81599077 | Msa0894980:intron | 30.0% |
| !! | CAAAAATTCTAAGGTTTCGT+AGG | - | chr6_1:81599088-81599107 | Msa0894980:intron | 30.0% |
| ATTCAATTATGTAGCATAGG+AGG | + | chr6_1:81599172-81599191 | None:intergenic | 30.0% | |
| TTTGAACCATAAGTATGACA+TGG | + | chr6_1:81599255-81599274 | None:intergenic | 30.0% | |
| TGTTTGATGTGTGGTATTTA+TGG | - | chr6_1:81599280-81599299 | Msa0894980:CDS | 30.0% | |
| ! | GCTAGTTGATATATAGTTCA+TGG | - | chr6_1:81599379-81599398 | Msa0894980:CDS | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr6_1:81599419-81599438 | Msa0894980:CDS | 30.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr6_1:81599491-81599510 | None:intergenic | 30.0% | |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | + | chr6_1:81599517-81599536 | None:intergenic | 30.0% |
| AATAAGAAGTGAGAAAACCA+AGG | - | chr6_1:81599516-81599535 | Msa0894980:CDS | 30.0% | |
| ATATCATTACTCTAGTCATG+TGG | - | chr6_1:81599573-81599592 | Msa0894980:intron | 30.0% | |
| GGGTCAAAATAAAATAGATG+TGG | - | chr6_1:81599659-81599678 | Msa0894980:intron | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr6_1:81599908-81599927 | Msa0894980:intron | 30.0% |
| ACACCTTCATAAAAGTAAGT+TGG | + | chr6_1:81599914-81599933 | None:intergenic | 30.0% | |
| AAAGTGAAAATCACACCTTA+AGG | - | chr6_1:81599956-81599975 | Msa0894980:intron | 30.0% | |
| ! | TTTTAACAAGTCACACCTTA+AGG | + | chr6_1:81599974-81599993 | None:intergenic | 30.0% |
| TCAGCTCATGTAAAATCTTA+AGG | - | chr6_1:81600202-81600221 | Msa0894980:CDS | 30.0% | |
| !! | TTCTATGTGTTAGTGTTGAT+CGG | - | chr6_1:81600398-81600417 | Msa0894980:intron | 30.0% |
| !!! | GAGCTAAAAGCTCTTTTTTT+GGG | + | chr6_1:81600665-81600684 | None:intergenic | 30.0% |
| !!! | AGAGCTAAAAGCTCTTTTTT+TGG | + | chr6_1:81600666-81600685 | None:intergenic | 30.0% |
| ! | GATAAGCTAGTTGAAGTATT+TGG | + | chr6_1:81600885-81600904 | None:intergenic | 30.0% |
| TTAAATTTATATGCCGTACC+TGG | - | chr6_1:81601423-81601442 | Msa0894980:intron | 30.0% | |
| !! | CTTTTAAAAAACATGGACTC+TGG | - | chr6_1:81601528-81601547 | Msa0894980:intron | 30.0% |
| TATCTTCACTGCTGTAAAAA+AGG | - | chr6_1:81601810-81601829 | Msa0894980:intron | 30.0% | |
| TTCTTGAATGACATGAATTG+AGG | + | chr6_1:81601987-81602006 | None:intergenic | 30.0% | |
| AAACTAGGCCAAATATACAA+AGG | + | chr6_1:81602187-81602206 | None:intergenic | 30.0% | |
| TATTAGGTGAAACAACTACT+TGG | - | chr6_1:81602362-81602381 | Msa0894980:intron | 30.0% | |
| GGTTCCATAGTGATAAAAAT+TGG | - | chr6_1:81602394-81602413 | Msa0894980:intron | 30.0% | |
| ATACTCGAGAATATCCAAAT+AGG | - | chr6_1:81602557-81602576 | Msa0894980:intron | 30.0% | |
| ! | AATTTTTATTCCTCCAAGTG+TGG | - | chr6_1:81602638-81602657 | Msa0894980:intron | 30.0% |
| TGTTATTACTGGAATCAACA+TGG | - | chr6_1:81603143-81603162 | Msa0894980:intron | 30.0% | |
| ! | GTTACAAACTCACAAACTTT+TGG | - | chr6_1:81603174-81603193 | Msa0894980:intron | 30.0% |
| TTTGATGGAAGAACAGATAA+AGG | + | chr6_1:81603219-81603238 | None:intergenic | 30.0% | |
| TTATCTGTTCTTCCATCAAA+AGG | - | chr6_1:81603219-81603238 | Msa0894980:intron | 30.0% | |
| !! | TGTGTTTTATTAGAAATGCG+GGG | + | chr6_1:81603342-81603361 | None:intergenic | 30.0% |
| !!! | GTTTTTTGGAAGTGTACTTT+CGG | - | chr6_1:81603363-81603382 | Msa0894980:intron | 30.0% |
| !!! | CTTTTGTTTTCTATAGGAGT+AGG | - | chr6_1:81603484-81603503 | Msa0894980:intron | 30.0% |
| ! | TATTTTCTATGACTAGGCTA+AGG | - | chr6_1:81603736-81603755 | Msa0894980:intron | 30.0% |
| AATCTCTATTCCTTCCAAAA+AGG | - | chr6_1:81603802-81603821 | Msa0894980:intron | 30.0% | |
| CCATATAGACATAATATACC+TGG | + | chr6_1:81604184-81604203 | None:intergenic | 30.0% | |
| CCAGGTATATTATGTCTATA+TGG | - | chr6_1:81604181-81604200 | Msa0894980:intron | 30.0% | |
| !!! | TGTTTTGTTGTGTTTCTAGT+TGG | - | chr6_1:81604434-81604453 | Msa0894980:intron | 30.0% |
| !! | CTTAATATGTTTTTGAGCCT+TGG | - | chr6_1:81604544-81604563 | Msa0894980:intron | 30.0% |
| TGCTATTATGTTAGCCAATT+TGG | + | chr6_1:81604738-81604757 | None:intergenic | 30.0% | |
| !!! | TCTTGTGATGTGATTTTTTG+TGG | - | chr6_1:81604781-81604800 | Msa0894980:intron | 30.0% |
| TGTTCTTCTTAAAGGCAAAT+TGG | + | chr6_1:81604951-81604970 | None:intergenic | 30.0% | |
| TCCATACATGTTCTTCTTAA+AGG | + | chr6_1:81604959-81604978 | None:intergenic | 30.0% | |
| AAAGCAAGAGAGTAGAAGAA+AGG | + | chr6_1:81598269-81598288 | None:intergenic | 35.0% | |
| ! | AAAAGTGAAGTGTTAGGTTG+CGG | + | chr6_1:81598301-81598320 | None:intergenic | 35.0% |
| ! | ACAGAGAAAAGTGAAGTGTT+AGG | + | chr6_1:81598307-81598326 | None:intergenic | 35.0% |
| AGGAATTCTCTTTCCATATG+TGG | + | chr6_1:81598408-81598427 | None:intergenic | 35.0% | |
| CATATGGAAAGAGAATTCCT+TGG | - | chr6_1:81598408-81598427 | Msa0894980:CDS | 35.0% | |
| !!! | TATTTTTGGAACTGAAGCCA+AGG | + | chr6_1:81598428-81598447 | None:intergenic | 35.0% |
| TCAGTTCCAAAAATAGTCCA+TGG | - | chr6_1:81598433-81598452 | Msa0894980:CDS | 35.0% | |
| TTTCACATCCCCATAACAAT+AGG | + | chr6_1:81598580-81598599 | None:intergenic | 35.0% | |
| !! | TATCGATGTTCTAAGAGCAT+TGG | - | chr6_1:81598834-81598853 | Msa0894980:intron | 35.0% |
| ! | TCGTAGGAAGAACTTGTTTA+AGG | - | chr6_1:81599104-81599123 | Msa0894980:intron | 35.0% |
| ! | TTTATATTAGCACACTGGCT+AGG | - | chr6_1:81599228-81599247 | Msa0894980:CDS | 35.0% |
| ! | TTATATTAGCACACTGGCTA+GGG | - | chr6_1:81599229-81599248 | Msa0894980:CDS | 35.0% |
| !! | CAAAGTTGATGTTTGATGTG+TGG | - | chr6_1:81599271-81599290 | Msa0894980:CDS | 35.0% |
| !! | TCAAAGTTGATGTGTGAATG+TGG | - | chr6_1:81599304-81599323 | Msa0894980:CDS | 35.0% |
| ATCAACTAGCTCAAGAATTG+TGG | + | chr6_1:81599369-81599388 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr6_1:81599424-81599443 | None:intergenic | 35.0% | |
| ! | TTTCTTTTTGATGCAATGGG+TGG | + | chr6_1:81599620-81599639 | None:intergenic | 35.0% |
| TGTTAAAAGACACCACCAAA+AGG | - | chr6_1:81599986-81600005 | Msa0894980:intron | 35.0% | |
| ! | TTTTGTTACAAGCCTCCTTT+TGG | + | chr6_1:81600004-81600023 | None:intergenic | 35.0% |
| TATGTTAGAAAACGTGCTCT+TGG | - | chr6_1:81600532-81600551 | Msa0894980:intron | 35.0% | |
| ATACGATAGTGCTAAGCATA+AGG | + | chr6_1:81600988-81601007 | None:intergenic | 35.0% | |
| TAGACTCTCATTCATACATC+AGG | + | chr6_1:81601036-81601055 | None:intergenic | 35.0% | |
| !! | GCAGTGGTCATTTTCAAATA+AGG | - | chr6_1:81601950-81601969 | Msa0894980:intron | 35.0% |
| TGAATGACATGAATTGAGGA+AGG | + | chr6_1:81601983-81602002 | None:intergenic | 35.0% | |
| TAGGTCAAGAAACAGTGTTA+TGG | - | chr6_1:81602022-81602041 | Msa0894980:intron | 35.0% | |
| ATATATCCAGATGAAGCTAC+TGG | + | chr6_1:81602050-81602069 | None:intergenic | 35.0% | |
| AAGAACATTGAGTGCTTGTT+AGG | - | chr6_1:81602235-81602254 | Msa0894980:intron | 35.0% | |
| !! | TGAGTGCTTGTTAGGTTTTA+AGG | - | chr6_1:81602243-81602262 | Msa0894980:intron | 35.0% |
| ! | TGGAACCAACCATATACTTT+TGG | - | chr6_1:81602658-81602677 | Msa0894980:intron | 35.0% |
| AGGATATACTCTTTCAACGT+GGG | + | chr6_1:81602905-81602924 | None:intergenic | 35.0% | |
| AAGGATATACTCTTTCAACG+TGG | + | chr6_1:81602906-81602925 | None:intergenic | 35.0% | |
| AATTTGGCCATAAAGCAAGT+AGG | - | chr6_1:81603018-81603037 | Msa0894980:intron | 35.0% | |
| CTTGTTTCCTACTTGCTTTA+TGG | + | chr6_1:81603028-81603047 | None:intergenic | 35.0% | |
| ATGATATTGTGGAGCAATGT+AGG | - | chr6_1:81603432-81603451 | Msa0894980:intron | 35.0% | |
| TGATATTGTGGAGCAATGTA+GGG | - | chr6_1:81603433-81603452 | Msa0894980:intron | 35.0% | |
| AGGAATTGTTCCAAATCCAA+TGG | - | chr6_1:81603504-81603523 | Msa0894980:intron | 35.0% | |
| AACTGTACCACCATAGAATA+TGG | + | chr6_1:81603550-81603569 | None:intergenic | 35.0% | |
| GGTAAAAAAGTTACCTTCTC+AGG | + | chr6_1:81603594-81603613 | None:intergenic | 35.0% | |
| ! | TTATTTTCTGCAATCTGCGA+TGG | - | chr6_1:81603650-81603669 | Msa0894980:intron | 35.0% |
| ATCATGTTACTAGCTGGAAA+TGG | - | chr6_1:81603761-81603780 | Msa0894980:intron | 35.0% | |
| GTCGCAATAATAAGATCCTT+AGG | - | chr6_1:81603932-81603951 | Msa0894980:intron | 35.0% | |
| AACTTGCATGAGAAGTCATT+GGG | + | chr6_1:81604021-81604040 | None:intergenic | 35.0% | |
| AATAGGAGATTCCAAATGGT+TGG | + | chr6_1:81604119-81604138 | None:intergenic | 35.0% | |
| CAACAATAGGAGATTCCAAA+TGG | + | chr6_1:81604123-81604142 | None:intergenic | 35.0% | |
| CCTATAGAAGTAGCAACAAT+AGG | + | chr6_1:81604136-81604155 | None:intergenic | 35.0% | |
| ! | CCTATTGTTGCTACTTCTAT+AGG | - | chr6_1:81604133-81604152 | Msa0894980:intron | 35.0% |
| TATACCTGGTTGAATCACAT+TGG | + | chr6_1:81604170-81604189 | None:intergenic | 35.0% | |
| TTTATGGTGAAATCGCATAC+CGG | - | chr6_1:81604272-81604291 | Msa0894980:intron | 35.0% | |
| !! | GTTTTTGAGCCTTGGATATT+AGG | - | chr6_1:81604552-81604571 | Msa0894980:intron | 35.0% |
| !! | AGTTTCTCCATTGATTTCTC+TGG | - | chr6_1:81604905-81604924 | Msa0894980:five_prime_UTR | 35.0% |
| ACTTGAACCAGAGAAATCAA+TGG | + | chr6_1:81604915-81604934 | None:intergenic | 35.0% | |
| CTTCTTAAAGGCAAATTGGT+GGG | + | chr6_1:81604947-81604966 | None:intergenic | 35.0% | |
| TCTTCTTAAAGGCAAATTGG+TGG | + | chr6_1:81604948-81604967 | None:intergenic | 35.0% | |
| ! | GCCTTTAAGAAGAACATGTA+TGG | - | chr6_1:81604955-81604974 | Msa0894980:five_prime_UTR | 35.0% |
| !! | GGTAGTCCATGGACTATTTT+TGG | + | chr6_1:81598442-81598461 | None:intergenic | 40.0% |
| TCTTCTTTCATGGTAGTCCA+TGG | + | chr6_1:81598453-81598472 | None:intergenic | 40.0% | |
| !! | GTTGGAAGCATCTTCTTTCA+TGG | + | chr6_1:81598463-81598482 | None:intergenic | 40.0% |
| TCCAACAAACCAAAAGACCA+AGG | - | chr6_1:81598477-81598496 | Msa0894980:intron | 40.0% | |
| !!! | ACCTTGGTCTTTTGGTTTGT+TGG | + | chr6_1:81598481-81598500 | None:intergenic | 40.0% |
| TGCACCAACACCTATTGTTA+TGG | - | chr6_1:81598567-81598586 | Msa0894980:intron | 40.0% | |
| GCACCAACACCTATTGTTAT+GGG | - | chr6_1:81598568-81598587 | Msa0894980:intron | 40.0% | |
| CACCAACACCTATTGTTATG+GGG | - | chr6_1:81598569-81598588 | Msa0894980:intron | 40.0% | |
| ATCCCCATAACAATAGGTGT+TGG | + | chr6_1:81598574-81598593 | None:intergenic | 40.0% | |
| ! | AGTTGATGTGTGAATGTGGT+AGG | - | chr6_1:81599308-81599327 | Msa0894980:CDS | 40.0% |
| GTTGATGTGTGAATGTGGTA+GGG | - | chr6_1:81599309-81599328 | Msa0894980:CDS | 40.0% | |
| CTTGTCAGTGTGTTGTAAGA+TGG | - | chr6_1:81599340-81599359 | Msa0894980:CDS | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr6_1:81599481-81599500 | None:intergenic | 40.0% | |
| GACAACTTTGTTGACAACCT+TGG | + | chr6_1:81599536-81599555 | None:intergenic | 40.0% | |
| TAAAAGACACCACCAAAAGG+AGG | - | chr6_1:81599989-81600008 | Msa0894980:intron | 40.0% | |
| TATCTAGGTAATAACTGGCC+AGG | + | chr6_1:81601444-81601463 | None:intergenic | 40.0% | |
| TGATGGGGTAGATGAAGTAT+AGG | - | chr6_1:81601659-81601678 | Msa0894980:intron | 40.0% | |
| TTTGATGCAGTTAGGAGTTC+AGG | - | chr6_1:81601924-81601943 | Msa0894980:intron | 40.0% | |
| GCACTCAATGTTCTTCAACA+AGG | + | chr6_1:81602230-81602249 | None:intergenic | 40.0% | |
| !! | ACAACTACTTGGTGTGTGTT+TGG | - | chr6_1:81602373-81602392 | Msa0894980:intron | 40.0% |
| ! | TATATGGTTGGTTCCACACT+TGG | + | chr6_1:81602654-81602673 | None:intergenic | 40.0% |
| ATACTCTTTCAACGTGGGTT+AGG | + | chr6_1:81602900-81602919 | None:intergenic | 40.0% | |
| AAGCAAGTAGGAAACAAGCA+TGG | - | chr6_1:81603030-81603049 | Msa0894980:intron | 40.0% | |
| TGTGCATCAGAACTTTGCAT+AGG | + | chr6_1:81603069-81603088 | None:intergenic | 40.0% | |
| TGGAAGAACAGATAAAGGTG+TGG | + | chr6_1:81603214-81603233 | None:intergenic | 40.0% | |
| AAATGCGGGGTGGAAAATAT+TGG | + | chr6_1:81603329-81603348 | None:intergenic | 40.0% | |
| !! | GTTTTATTAGAAATGCGGGG+TGG | + | chr6_1:81603339-81603358 | None:intergenic | 40.0% |
| AGGTGTAGTACCATTGGATT+TGG | + | chr6_1:81603517-81603536 | None:intergenic | 40.0% | |
| TAGAATATGGTCAACTGAGC+AGG | + | chr6_1:81603537-81603556 | None:intergenic | 40.0% | |
| GCTCAGTTGACCATATTCTA+TGG | - | chr6_1:81603537-81603556 | Msa0894980:intron | 40.0% | |
| CAGTTGACCATATTCTATGG+TGG | - | chr6_1:81603540-81603559 | Msa0894980:intron | 40.0% | |
| CCACTGCGCTATTAAGTTTA+GGG | + | chr6_1:81603615-81603634 | None:intergenic | 40.0% | |
| TCCACTGCGCTATTAAGTTT+AGG | + | chr6_1:81603616-81603635 | None:intergenic | 40.0% | |
| AAGGCAATCATGTTACTAGC+TGG | - | chr6_1:81603755-81603774 | Msa0894980:intron | 40.0% | |
| TCATGCAAGTACTCAACCAA+GGG | - | chr6_1:81603886-81603905 | Msa0894980:intron | 40.0% | |
| ATGAGATAGGTCATTGTGAG+AGG | + | chr6_1:81603975-81603994 | None:intergenic | 40.0% | |
| GAACTTGCATGAGAAGTCAT+TGG | + | chr6_1:81604022-81604041 | None:intergenic | 40.0% | |
| TCATGCAAGTTCTTATCCCA+AGG | - | chr6_1:81604030-81604049 | Msa0894980:intron | 40.0% | |
| CATGCAAGTTCTTATCCCAA+GGG | - | chr6_1:81604031-81604050 | Msa0894980:intron | 40.0% | |
| !! | AGATTCCAAATGGTTGGTAG+GGG | + | chr6_1:81604113-81604132 | None:intergenic | 40.0% |
| ! | GAGATTCCAAATGGTTGGTA+GGG | + | chr6_1:81604114-81604133 | None:intergenic | 40.0% |
| ! | ATACCGGTTAACGAATAGAG+AGG | - | chr6_1:81604288-81604307 | Msa0894980:intron | 40.0% |
| !! | TTTTGGAGAAGCGAAAGGAA+AGG | - | chr6_1:81604492-81604511 | Msa0894980:intron | 40.0% |
| TTTAATGTGTCACCTAGACG+CGG | - | chr6_1:81604605-81604624 | Msa0894980:intron | 40.0% | |
| CTAGGGCCATGTCATACTTA+TGG | - | chr6_1:81599246-81599265 | Msa0894980:CDS | 45.0% | |
| ! | TGTTACAAGCCTCCTTTTGG+TGG | + | chr6_1:81600001-81600020 | None:intergenic | 45.0% |
| !! | TGTGTTAGTGTTGATCGGTG+TGG | - | chr6_1:81600403-81600422 | Msa0894980:intron | 45.0% |
| AAAACGTGCTCTTGGTTGTC+TGG | - | chr6_1:81600540-81600559 | Msa0894980:intron | 45.0% | |
| GCTAAGCATAAGGCTCTGTT+TGG | + | chr6_1:81600978-81600997 | None:intergenic | 45.0% | |
| CTAAGGTCTAACATGGGCAT+TGG | - | chr6_1:81601134-81601153 | Msa0894980:intron | 45.0% | |
| ATGACAAGCTGGTTGCAAAG+AGG | - | chr6_1:81601204-81601223 | Msa0894980:CDS | 45.0% | |
| AGGTAATAACTGGCCAGGTA+CGG | + | chr6_1:81601439-81601458 | None:intergenic | 45.0% | |
| TTAGGAGTTCAGGAATGCAG+TGG | - | chr6_1:81601934-81601953 | Msa0894980:intron | 45.0% | |
| ATGGATCCAGTAGCTTCATC+TGG | - | chr6_1:81602041-81602060 | Msa0894980:intron | 45.0% | |
| GGTGAGACTTGAGTTTGCAA+TGG | - | chr6_1:81602264-81602283 | Msa0894980:intron | 45.0% | |
| ! | AACAGATAAAGGTGTGGCAG+AGG | + | chr6_1:81603208-81603227 | None:intergenic | 45.0% |
| ! | CCAACTATGGGACCTTTTGA+TGG | + | chr6_1:81603234-81603253 | None:intergenic | 45.0% |
| CCATCAAAAGGTCCCATAGT+TGG | - | chr6_1:81603231-81603250 | Msa0894980:intron | 45.0% | |
| AGGTCAGTAGAGCCAACTAT+GGG | + | chr6_1:81603246-81603265 | None:intergenic | 45.0% | |
| TAGGTCAGTAGAGCCAACTA+TGG | + | chr6_1:81603247-81603266 | None:intergenic | 45.0% | |
| !! | TAGTTGGCTCTACTGACCTA+AGG | - | chr6_1:81603247-81603266 | Msa0894980:intron | 45.0% |
| TGATGACATCTCTCCTGAGA+AGG | - | chr6_1:81603578-81603597 | Msa0894980:intron | 45.0% | |
| CCCTAAACTTAATAGCGCAG+TGG | - | chr6_1:81603612-81603631 | Msa0894980:intron | 45.0% | |
| CATGAGAGGTCATTGGAAGA+GGG | + | chr6_1:81603871-81603890 | None:intergenic | 45.0% | |
| GTACTTGCATGAGAGGTCAT+TGG | + | chr6_1:81603878-81603897 | None:intergenic | 45.0% | |
| TGGTTGAGTACTTGCATGAG+AGG | + | chr6_1:81603885-81603904 | None:intergenic | 45.0% | |
| CTCATGCAAGTACTCAACCA+AGG | - | chr6_1:81603885-81603904 | Msa0894980:intron | 45.0% | |
| CATGCAAGTACTCAACCAAG+GGG | - | chr6_1:81603887-81603906 | Msa0894980:intron | 45.0% | |
| CTTGGCAATTGAAGGTCCTA+AGG | + | chr6_1:81603951-81603970 | None:intergenic | 45.0% | |
| TGAGAGGACTTGGCAATTGA+AGG | + | chr6_1:81603959-81603978 | None:intergenic | 45.0% | |
| TAGGTCATTGTGAGAGGACT+TGG | + | chr6_1:81603969-81603988 | None:intergenic | 45.0% | |
| GCAAAGGTGAGAGATGAGAT+AGG | + | chr6_1:81603988-81604007 | None:intergenic | 45.0% | |
| ATTGGGAGAGAACTTGGCAA+AGG | + | chr6_1:81604004-81604023 | None:intergenic | 45.0% | |
| GAAGTCATTGGGAGAGAACT+TGG | + | chr6_1:81604010-81604029 | None:intergenic | 45.0% | |
| ! | TTGCTACTTGAACCTCCCTT+GGG | + | chr6_1:81604049-81604068 | None:intergenic | 45.0% |
| AAATGCCCCTACCAACCATT+TGG | - | chr6_1:81604105-81604124 | Msa0894980:intron | 45.0% | |
| GGAGATTCCAAATGGTTGGT+AGG | + | chr6_1:81604115-81604134 | None:intergenic | 45.0% | |
| CCTGGTTGAATCACATTGGT+AGG | + | chr6_1:81604166-81604185 | None:intergenic | 45.0% | |
| CCTACCAATGTGATTCAACC+AGG | - | chr6_1:81604163-81604182 | Msa0894980:intron | 45.0% | |
| CGACCTCTCTATTCGTTAAC+CGG | + | chr6_1:81604294-81604313 | None:intergenic | 45.0% | |
| !! | TCGGTTTTTGGAGAAGCGAA+AGG | - | chr6_1:81604487-81604506 | Msa0894980:intron | 45.0% |
| AAATCACCTGAATGCAGCAC+TGG | - | chr6_1:81604869-81604888 | Msa0894980:CDS | 45.0% | |
| CTTAAAGGCAAATTGGTGGG+TGG | + | chr6_1:81604944-81604963 | None:intergenic | 45.0% | |
| !! | TATATAAATATTAAATGAAA+TGG | + | chr6_1:81600356-81600375 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTATTTTGA+TGG | - | chr6_1:81601642-81601661 | Msa0894980:intron | 5.0% |
| !!! | TTTTATTTATTTATTTTGAT+GGG | - | chr6_1:81601643-81601662 | Msa0894980:intron | 5.0% |
| !!! | CTTATATAATTTTTTAATTT+CGG | - | chr6_1:81604680-81604699 | Msa0894980:intron | 5.0% |
| ! | ATGGTTGGTTCCACACTTGG+AGG | + | chr6_1:81602651-81602670 | None:intergenic | 50.0% |
| CTGAGCAGGTGTAGTACCAT+TGG | + | chr6_1:81603523-81603542 | None:intergenic | 50.0% | |
| CTTGGCAATGGTGAGGGATA+GGG | + | chr6_1:81603848-81603867 | None:intergenic | 50.0% | |
| ATTGGAAGAGGGCTTGGCAA+TGG | + | chr6_1:81603860-81603879 | None:intergenic | 50.0% | |
| GCATGAGAGGTCATTGGAAG+AGG | + | chr6_1:81603872-81603891 | None:intergenic | 50.0% | |
| ! | TTGCTACTTGAACCTCCCCT+TGG | + | chr6_1:81603905-81603924 | None:intergenic | 50.0% |
| GCAAGTTCTTATCCCAAGGG+AGG | - | chr6_1:81604034-81604053 | Msa0894980:intron | 50.0% | |
| ! | GTTGCTACTTGAACCTCCCT+TGG | + | chr6_1:81604050-81604069 | None:intergenic | 50.0% |
| !! | TGGTTGGTAGGGGCATTTGA+AGG | + | chr6_1:81604103-81604122 | None:intergenic | 50.0% |
| !!! | AGCATCGCTGACTCGGTTTT+TGG | - | chr6_1:81604475-81604494 | Msa0894980:intron | 50.0% |
| TCTGATCCAGTGCTGCATTC+AGG | + | chr6_1:81604878-81604897 | None:intergenic | 50.0% | |
| ACGTGCTCTTGGTTGTCTGG+TGG | - | chr6_1:81600543-81600562 | Msa0894980:intron | 55.0% | |
| GCTTGGCAATGGTGAGGGAT+AGG | + | chr6_1:81603849-81603868 | None:intergenic | 55.0% | |
| AGAGGGCTTGGCAATGGTGA+GGG | + | chr6_1:81603854-81603873 | None:intergenic | 55.0% | |
| AAGAGGGCTTGGCAATGGTG+AGG | + | chr6_1:81603855-81603874 | None:intergenic | 55.0% | |
| GAGGTCATTGGAAGAGGGCT+TGG | + | chr6_1:81603866-81603885 | None:intergenic | 55.0% | |
| GCAAGTACTCAACCAAGGGG+AGG | - | chr6_1:81603890-81603909 | Msa0894980:intron | 55.0% | |
| ! | AGCGATGCTTTTCGCGCTTG+AGG | + | chr6_1:81604464-81604483 | None:intergenic | 55.0% |
| !! | CGCGAAAAGCATCGCTGACT+CGG | - | chr6_1:81604468-81604487 | Msa0894980:intron | 55.0% |
| ATTGACGAGTCTCCGCGTCT+AGG | + | chr6_1:81604620-81604639 | None:intergenic | 55.0% | |
| GCAATGGTGAGGGATAGGGC+TGG | + | chr6_1:81603844-81603863 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 81598113 | 81605192 | 81598113 | ID=Msa0894980;Name=Msa0894980 |
| chr6_1 | mRNA | 81598113 | 81605192 | 81598113 | ID=Msa0894980-mRNA-1;Parent=Msa0894980;Name=Msa0894980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=244|0.85|0.87|1|0.85|0.75|8|201|441 |
| chr6_1 | exon | 81598113 | 81598470 | 81598113 | ID=Msa0894980-mRNA-1:exon:13840;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81598792 | 81598852 | 81598792 | ID=Msa0894980-mRNA-1:exon:13839;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81599121 | 81599553 | 81599121 | ID=Msa0894980-mRNA-1:exon:13838;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81599706 | 81599805 | 81599706 | ID=Msa0894980-mRNA-1:exon:13837;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81600037 | 81600290 | 81600037 | ID=Msa0894980-mRNA-1:exon:13836;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81601175 | 81601407 | 81601175 | ID=Msa0894980-mRNA-1:exon:13835;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81604807 | 81605122 | 81604807 | ID=Msa0894980-mRNA-1:exon:13834;Parent=Msa0894980-mRNA-1 |
| chr6_1 | exon | 81605177 | 81605192 | 81605177 | ID=Msa0894980-mRNA-1:exon:13833;Parent=Msa0894980-mRNA-1 |
| chr6_1 | five_prime_UTR | 81605177 | 81605192 | 81605177 | ID=Msa0894980-mRNA-1:five_prime_utr;Parent=Msa0894980-mRNA-1 |
| chr6_1 | five_prime_UTR | 81604895 | 81605122 | 81604895 | ID=Msa0894980-mRNA-1:five_prime_utr;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81604807 | 81604894 | 81604807 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81601175 | 81601407 | 81601175 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81600037 | 81600290 | 81600037 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81599706 | 81599805 | 81599706 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81599121 | 81599553 | 81599121 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81598792 | 81598852 | 81598792 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | CDS | 81598314 | 81598470 | 81598314 | ID=Msa0894980-mRNA-1:cds;Parent=Msa0894980-mRNA-1 |
| chr6_1 | three_prime_UTR | 81598113 | 81598313 | 81598113 | ID=Msa0894980-mRNA-1:three_prime_utr;Parent=Msa0894980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
