Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948700 | AFK48178.1 | 86.992 | 369 | 16 | 2 | 1 | 349 | 1 | 357 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948700 | sp|Q9LVI4|TIF6B_ARATH | 34.783 | 299 | 117 | 16 | 1 | 263 | 1 | 257 | 5.02e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948700 | I3T6N6 | 86.992 | 369 | 16 | 2 | 1 | 349 | 1 | 357 | 0.0 | 630 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0894980 | Msa0948700 | 0.831720 | 1.422332e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948700 | MtrunA17_Chr6g0478581 | 86.992 | 369 | 16 | 2 | 1 | 349 | 1 | 357 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948700 | AT3G17860.1 | 34.783 | 299 | 117 | 16 | 1 | 263 | 1 | 257 | 5.10e-21 | 93.2 |
| Msa0948700 | AT1G48500.1 | 29.084 | 251 | 111 | 12 | 1 | 247 | 1 | 188 | 2.73e-11 | 64.3 |
| Msa0948700 | AT1G48500.2 | 29.880 | 251 | 109 | 13 | 1 | 247 | 1 | 188 | 3.61e-11 | 63.5 |
Find 92 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTTCCTACTTGCTTTA+TGG | 0.147271 | 6_3:+33398582 | None:intergenic |
| CCTATTGTTGCTACTTCTAT+AGG | 0.270531 | 6_3:-33397479 | Msa0948700:CDS |
| GTCTAATCATAAATCATTCT+TGG | 0.289760 | 6_3:-33399484 | Msa0948700:CDS |
| CAATCTAATCATGTTATTAC+TGG | 0.306462 | 6_3:-33398475 | Msa0948700:CDS |
| TTTGATGCAGTTAGGAGTTC+AGG | 0.316880 | 6_3:-33399657 | Msa0948700:CDS |
| GTTACAAACTCACAAACTTT+TGG | 0.317063 | 6_3:-33398433 | Msa0948700:CDS |
| AATCTCTATTCCTTCCAAAA+AGG | 0.344054 | 6_3:-33397810 | Msa0948700:CDS |
| GTTGGAAGCATCTTCTTTCA+TGG | 0.359919 | 6_3:+33402753 | None:intergenic |
| AGTTTCTCCATTGATTTCTC+TGG | 0.361158 | 6_3:-33396707 | Msa0948700:three_prime_UTR |
| AAATGCCCCTACTAACCATT+TGG | 0.365374 | 6_3:-33397507 | Msa0948700:CDS |
| TTTGATGGAAGAACAGATAA+AGG | 0.367261 | 6_3:+33398391 | None:intergenic |
| GGAGATTCCAAATGGTTAGT+AGG | 0.395561 | 6_3:+33397500 | None:intergenic |
| GCTCAGTTGACCATATTCTA+TGG | 0.396208 | 6_3:-33398075 | Msa0948700:CDS |
| AACTGTACCACCATAGAATA+TGG | 0.403758 | 6_3:+33398065 | None:intergenic |
| AGGTGTAGTACCATTGGATT+TGG | 0.407015 | 6_3:+33398098 | None:intergenic |
| TCTGATCCAGTGCTGCATTC+AGG | 0.408286 | 6_3:+33396737 | None:intergenic |
| GTTGCTACTTGAACCTCCCT+TGG | 0.419319 | 6_3:+33397565 | None:intergenic |
| TTATTCTTTCTGCAACTTTG+AGG | 0.420744 | 6_3:-33402863 | Msa0948700:five_prime_UTR |
| CCTATAGAAGTAGCAACAAT+AGG | 0.423632 | 6_3:+33397479 | None:intergenic |
| GTCACAATAATAAAATCTTT+AGG | 0.424622 | 6_3:-33397536 | Msa0948700:CDS |
| CAGTAATAACATGATTAGAT+TGG | 0.431253 | 6_3:+33398476 | None:intergenic |
| TTATCTGTTCTTCCATCAAA+AGG | 0.431556 | 6_3:-33398388 | Msa0948700:CDS |
| TGAGAGGACTTGGCAATTGA+AGG | 0.441352 | 6_3:+33397656 | None:intergenic |
| TTCTTAAATTTGATGCAGTT+AGG | 0.445314 | 6_3:-33399665 | Msa0948700:CDS |
| GAAGTCATTGGGAGAGAACT+TGG | 0.446941 | 6_3:+33397605 | None:intergenic |
| GAACTTGCATGAGAAGTCAT+TGG | 0.447319 | 6_3:+33397593 | None:intergenic |
| ATCATGTTACTAGCTGGAAA+TGG | 0.450451 | 6_3:-33397851 | Msa0948700:intron |
| TAGGTCATTGTGAGAGGACT+TGG | 0.454376 | 6_3:+33397646 | None:intergenic |
| GCTTGGCAATGGTGAGGGAT+AGG | 0.455476 | 6_3:+33397766 | None:intergenic |
| ACAGAGAAAAGTGAAGTGTT+AGG | 0.455992 | 6_3:+33402909 | None:intergenic |
| TAGAATATGGTCAACTGAGC+AGG | 0.462120 | 6_3:+33398078 | None:intergenic |
| GAGATTCCAAATGGTTAGTA+GGG | 0.462551 | 6_3:+33397501 | None:intergenic |
| TTGCTACTTGAACCTCCCTT+GGG | 0.466052 | 6_3:+33397566 | None:intergenic |
| GAGGTCATTGGAAGAGGGCT+TGG | 0.466655 | 6_3:+33397749 | None:intergenic |
| GTACTTGCATGAGAGGTCAT+TGG | 0.470357 | 6_3:+33397737 | None:intergenic |
| TCTAATCATAAATCATTCTT+GGG | 0.475638 | 6_3:-33399483 | Msa0948700:CDS |
| ATGGATCCAGTAGCTTCATC+TGG | 0.480372 | 6_3:-33399540 | Msa0948700:CDS |
| AGGAATTCTCTTTCCATATG+TGG | 0.481576 | 6_3:+33402808 | None:intergenic |
| AACTTGCATGAGAAGTCATT+GGG | 0.486290 | 6_3:+33397594 | None:intergenic |
| ATATATCCAGATGAAGCTAC+TGG | 0.486559 | 6_3:+33399534 | None:intergenic |
| AGAATAATACTCATGAAGAT+AGG | 0.490063 | 6_3:-33399578 | Msa0948700:CDS |
| CTTGGCAATGGTGAGGGATA+GGG | 0.492080 | 6_3:+33397767 | None:intergenic |
| TTCTTGAATGACATGAATTG+AGG | 0.493289 | 6_3:+33399597 | None:intergenic |
| TTGCTACTTGAACCTCCCCT+TGG | 0.494100 | 6_3:+33397710 | None:intergenic |
| CTGAGCAGGTGTAGTACCAT+TGG | 0.495191 | 6_3:+33398092 | None:intergenic |
| GCATGAGAGGTCATTGGAAG+AGG | 0.495990 | 6_3:+33397743 | None:intergenic |
| CCATCAAAAGGTCCCATAGT+TGG | 0.499185 | 6_3:-33398376 | Msa0948700:CDS |
| TAGGTCAGTAGAGCCAACTA+TGG | 0.501275 | 6_3:+33398363 | None:intergenic |
| GTCGCAATAATAAGATCCTT+AGG | 0.504594 | 6_3:-33397680 | Msa0948700:CDS |
| ATCATTCTTGGGTGTGACAC+AGG | 0.505809 | 6_3:-33399472 | Msa0948700:intron |
| CAACAATAGGAGATTCCAAA+TGG | 0.511822 | 6_3:+33397492 | None:intergenic |
| TAGGTCAAGAAACTGTGTTA+TGG | 0.516069 | 6_3:-33399559 | Msa0948700:CDS |
| AACAGATAAAGGTGTGGCAG+AGG | 0.516274 | 6_3:+33398402 | None:intergenic |
| AAAAGTGAAGTGTTAGGTTG+CGG | 0.516963 | 6_3:+33402915 | None:intergenic |
| TCATGCAAGTTCTTATCCCA+AGG | 0.526316 | 6_3:-33397582 | Msa0948700:CDS |
| TCTTCTTTCATGGTAGTCCA+TGG | 0.530904 | 6_3:+33402763 | None:intergenic |
| CTTGGCAATTGAAGGTCCTA+AGG | 0.532204 | 6_3:+33397664 | None:intergenic |
| AAAGCAAGAGAGTAGAAGAA+AGG | 0.533416 | 6_3:+33402947 | None:intergenic |
| TGGTTAGTAGGGGCATTTGA+AGG | 0.535343 | 6_3:+33397512 | None:intergenic |
| AAATCACCTGAATGCAGCAC+TGG | 0.539481 | 6_3:-33396743 | Msa0948700:three_prime_UTR |
| GCAAAGGTGAGAGATGAGAT+AGG | 0.557521 | 6_3:+33397627 | None:intergenic |
| AGAGGGCTTGGCAATGGTGA+GGG | 0.558559 | 6_3:+33397761 | None:intergenic |
| TGGTTGAGTACTTGCATGAG+AGG | 0.558968 | 6_3:+33397730 | None:intergenic |
| CATGAGAGGTCATTGGAAGA+GGG | 0.576369 | 6_3:+33397744 | None:intergenic |
| CCTGGTTGAATCACATTGGT+AGG | 0.578004 | 6_3:+33397449 | None:intergenic |
| TGAATGACATGAATTGAGGA+AGG | 0.578633 | 6_3:+33399601 | None:intergenic |
| ATTGGAAGAGGGCTTGGCAA+TGG | 0.579330 | 6_3:+33397755 | None:intergenic |
| TAGTTGGCTCTACTGACCTA+AGG | 0.580437 | 6_3:-33398360 | Msa0948700:intron |
| ATGAGATAGGTCATTGTGAG+AGG | 0.585630 | 6_3:+33397640 | None:intergenic |
| AAGAGGGCTTGGCAATGGTG+AGG | 0.587772 | 6_3:+33397760 | None:intergenic |
| CATATGGAAAGAGAATTCCT+TGG | 0.590006 | 6_3:-33402805 | Msa0948700:CDS |
| TCATGCAAGTACTCAACCAA+GGG | 0.597542 | 6_3:-33397726 | Msa0948700:CDS |
| AGGTCAGTAGAGCCAACTAT+GGG | 0.597778 | 6_3:+33398364 | None:intergenic |
| CCTACCAATGTGATTCAACC+AGG | 0.605618 | 6_3:-33397449 | Msa0948700:intron |
| TGTGCATCAGAACTTTGCAT+AGG | 0.606052 | 6_3:+33398541 | None:intergenic |
| CATGCAAGTTCTTATCCCAA+GGG | 0.608931 | 6_3:-33397581 | Msa0948700:CDS |
| CTCATGCAAGTACTCAACCA+AGG | 0.611643 | 6_3:-33397727 | Msa0948700:CDS |
| AGGAATTGTTCCAAATCCAA+TGG | 0.614409 | 6_3:-33398108 | Msa0948700:CDS |
| TATACCTGGTTGAATCACAT+TGG | 0.630846 | 6_3:+33397445 | None:intergenic |
| AATTTGGCCATAAAGCAAGT+AGG | 0.634556 | 6_3:-33398589 | Msa0948700:CDS |
| TGTTATTACTGGAATCAACA+TGG | 0.635983 | 6_3:-33398464 | Msa0948700:CDS |
| GCAATGGTGAGGGATAGGGT+TGG | 0.638300 | 6_3:+33397771 | None:intergenic |
| AAGCAAGTAGGAAACAAGCA+TGG | 0.639462 | 6_3:-33398577 | Msa0948700:CDS |
| GCAAGTTCTTATCCCAAGGG+AGG | 0.641995 | 6_3:-33397578 | Msa0948700:CDS |
| ATTGGGAGAGAACTTGGCAA+AGG | 0.651165 | 6_3:+33397611 | None:intergenic |
| CAGTTGACCATATTCTATGG+TGG | 0.670630 | 6_3:-33398072 | Msa0948700:intron |
| AGATTCCAAATGGTTAGTAG+GGG | 0.670933 | 6_3:+33397502 | None:intergenic |
| TTAGGAGTTCAGGAATGCAG+TGG | 0.686957 | 6_3:-33399647 | Msa0948700:CDS |
| GCAAGTACTCAACCAAGGGG+AGG | 0.687330 | 6_3:-33397722 | Msa0948700:CDS |
| TCCAACAAACCAAAAGACCA+AGG | 0.694197 | 6_3:-33402736 | Msa0948700:intron |
| TGGAAGAACAGATAAAGGTG+TGG | 0.711636 | 6_3:+33398396 | None:intergenic |
| CATGCAAGTACTCAACCAAG+GGG | 0.756359 | 6_3:-33397725 | Msa0948700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr6_3:33397116-33397135 | None:intergenic | 0.0% |
| !! | AATTATAAATATATATAAAA+CGG | + | chr6_3:33401873-33401892 | None:intergenic | 0.0% |
| !! | TATCATTAAATTAACAAAAA+CGG | - | chr6_3:33397205-33397224 | Msa0948700:intron | 10.0% |
| !! | ATTTCTCTAATAATAATATA+AGG | - | chr6_3:33397592-33397611 | Msa0948700:CDS | 10.0% |
| !!! | TAAATGCTTATATTTTTTTT+TGG | - | chr6_3:33398846-33398865 | Msa0948700:intron | 10.0% |
| !! | TAATTATATAATATACTAGA+TGG | + | chr6_3:33399331-33399350 | None:intergenic | 10.0% |
| !! | ATAATTATATTATATGATGA+TGG | - | chr6_3:33399344-33399363 | Msa0948700:intron | 10.0% |
| !!! | ATATAATCTTTTAAAAAACA+TGG | - | chr6_3:33399735-33399754 | Msa0948700:intron | 10.0% |
| !!! | TTTATTTATTTATTTTGATG+GGG | - | chr6_3:33399858-33399877 | Msa0948700:intron | 10.0% |
| !!! | ATTTTTTTTAATGTTGATTT+AGG | - | chr6_3:33400090-33400109 | Msa0948700:intron | 10.0% |
| !! | ATTTATTATTTAATCATGCA+TGG | - | chr6_3:33397303-33397322 | Msa0948700:intron | 15.0% |
| !! | TTTATTATTTAATCATGCAT+GGG | - | chr6_3:33397304-33397323 | Msa0948700:intron | 15.0% |
| !!! | TAACTTGTAGATAATAATAA+AGG | - | chr6_3:33397404-33397423 | Msa0948700:intron | 15.0% |
| !!! | AAAAAAAAATTGACAACTTT+TGG | - | chr6_3:33398009-33398028 | Msa0948700:intron | 15.0% |
| !!! | TATATTTTTTTTTGGTTAGA+AGG | - | chr6_3:33398854-33398873 | Msa0948700:intron | 15.0% |
| !!! | GTTTTTAAATATAAATATCG+TGG | - | chr6_3:33399025-33399044 | Msa0948700:intron | 15.0% |
| !! | CTTAGATTTAATATTAAACA+TGG | + | chr6_3:33399139-33399158 | None:intergenic | 15.0% |
| !! | CATGTTTAATATTAAATCTA+AGG | - | chr6_3:33399137-33399156 | Msa0948700:intron | 15.0% |
| !!! | AAATTGTTATTTATTTCTCA+AGG | + | chr6_3:33399194-33399213 | None:intergenic | 15.0% |
| !! | ATAAAATATTCATATACGAA+TGG | - | chr6_3:33399252-33399271 | Msa0948700:intron | 15.0% |
| !!! | TTATTAGTTTATTGTTATCT+AGG | + | chr6_3:33399673-33399692 | None:intergenic | 15.0% |
| !!! | TTATTTTGATATATGAAACT+AGG | + | chr6_3:33400416-33400435 | None:intergenic | 15.0% |
| !! | GTATTGAGAAAAAAAAAAAT+TGG | - | chr6_3:33400542-33400561 | Msa0948700:intron | 15.0% |
| !!! | AAAATTGATTTTCACATATT+TGG | + | chr6_3:33400790-33400809 | None:intergenic | 15.0% |
| !!! | GAAAATCAATTTTATATCTT+TGG | - | chr6_3:33400797-33400816 | Msa0948700:intron | 15.0% |
| !!! | ATATATGCTAAAACTTTTTT+TGG | - | chr6_3:33400917-33400936 | Msa0948700:intron | 15.0% |
| !!! | TAATATTTTGTAGGAAAATT+TGG | - | chr6_3:33401190-33401209 | Msa0948700:intron | 15.0% |
| !!! | TTTTAAATTTATGATACCTT+AGG | + | chr6_3:33401454-33401473 | None:intergenic | 15.0% |
| !!! | TATAATGAAATTATCCTTTT+TGG | + | chr6_3:33402002-33402021 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTACTTACTT+AGG | - | chr6_3:33402996-33403015 | Msa0948700:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTGTACTTACTTA+GGG | - | chr6_3:33402997-33403016 | Msa0948700:five_prime_UTR | 15.0% |
| !! | TTATTATTTAATCATGCATG+GGG | - | chr6_3:33397305-33397324 | Msa0948700:intron | 20.0% |
| !! | TTAATTCAATTATGTAGCAT+AGG | + | chr6_3:33397775-33397794 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTGATGCAAT+GGG | + | chr6_3:33398202-33398221 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTTTTGATGCAA+TGG | + | chr6_3:33398203-33398222 | None:intergenic | 20.0% |
| !!! | TTTTTTACAAGAAGTATAAC+TGG | - | chr6_3:33398299-33398318 | Msa0948700:intron | 20.0% |
| !!! | TTATTTCCTTTTTATCGATT+AGG | - | chr6_3:33398438-33398457 | Msa0948700:CDS | 20.0% |
| !!! | AAATGAAATGGTTTTCTTTT+AGG | + | chr6_3:33398704-33398723 | None:intergenic | 20.0% |
| !!! | ATATATTTTATTGCATAACG+TGG | - | chr6_3:33398940-33398959 | Msa0948700:intron | 20.0% |
| !! | GAAGCATAGTATTATTTAAT+GGG | + | chr6_3:33399571-33399590 | None:intergenic | 20.0% |
| !! | TGAAGCATAGTATTATTTAA+TGG | + | chr6_3:33399572-33399591 | None:intergenic | 20.0% |
| !! | AAATAATACTATGCTTCATA+AGG | - | chr6_3:33399574-33399593 | Msa0948700:CDS | 20.0% |
| !! | AAACTAATAACAAAGTAACA+AGG | - | chr6_3:33399683-33399702 | Msa0948700:CDS | 20.0% |
| !! | AATCTTTCAAATAACAAGTT+TGG | + | chr6_3:33400066-33400085 | None:intergenic | 20.0% |
| !! | TCTAATCATAAATCATTCTT+GGG | - | chr6_3:33400312-33400331 | Msa0948700:intron | 20.0% |
| !! | TACCAAACATCATAAAAATT+TGG | + | chr6_3:33400519-33400538 | None:intergenic | 20.0% |
| !!! | TAAAAATTGGTTCTAGTTAA+AGG | - | chr6_3:33400623-33400642 | Msa0948700:intron | 20.0% |
| !! | AGTCTAAAAAATAACTATAG+AGG | - | chr6_3:33400713-33400732 | Msa0948700:intron | 20.0% |
| !!! | AAGTAAAATCCAAAAGTATA+TGG | + | chr6_3:33400856-33400875 | None:intergenic | 20.0% |
| !! | CCACAAATTATAAGATATAA+AGG | + | chr6_3:33401113-33401132 | None:intergenic | 20.0% |
| !! | CCTTTATATCTTATAATTTG+TGG | - | chr6_3:33401110-33401129 | Msa0948700:intron | 20.0% |
| !!! | TATATCTTATAATTTGTGGA+AGG | - | chr6_3:33401114-33401133 | Msa0948700:intron | 20.0% |
| !!! | TACTTCTGTTAATATTTTGT+AGG | - | chr6_3:33401181-33401200 | Msa0948700:intron | 20.0% |
| !!! | CTAATAAAACACATGTTTTT+TGG | - | chr6_3:33401537-33401556 | Msa0948700:intron | 20.0% |
| !! | AAAATTGTGATATGATATTG+TGG | - | chr6_3:33401609-33401628 | Msa0948700:intron | 20.0% |
| !!! | TGTTTTCTTTTGTTTTCTAT+AGG | - | chr6_3:33401661-33401680 | Msa0948700:intron | 20.0% |
| !!! | GATTTTTATTTTCTATGACT+AGG | - | chr6_3:33401913-33401932 | Msa0948700:intron | 20.0% |
| !! | GTCACAATAATAAAATCTTT+AGG | - | chr6_3:33402259-33402278 | Msa0948700:intron | 20.0% |
| !! | TTCAACATTTGTGATATTTA+TGG | - | chr6_3:33402439-33402458 | Msa0948700:intron | 20.0% |
| !! | AAAAACATATTAAGTGATGA+AGG | + | chr6_3:33402721-33402740 | None:intergenic | 20.0% |
| !! | AAAAAAAAGGTGCAAATTGT+TGG | + | chr6_3:33396766-33396785 | None:intergenic | 25.0% |
| ! | GAAAATAGAAAAAGATACCT+TGG | + | chr6_3:33397079-33397098 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGAAAGCAGAAA+AGG | + | chr6_3:33397104-33397123 | None:intergenic | 25.0% |
| ! | ATAATAAAGGTTATGCTATC+AGG | - | chr6_3:33397417-33397436 | Msa0948700:intron | 25.0% |
| !! | AAATCTTAACCAATGCTTTT+AGG | + | chr6_3:33397446-33397465 | None:intergenic | 25.0% |
| ! | AATAATATAAGGAAGAACCA+TGG | - | chr6_3:33397603-33397622 | Msa0948700:CDS | 25.0% |
| ! | GAAAAAAGCAAAAGAACATA+AGG | + | chr6_3:33397650-33397669 | None:intergenic | 25.0% |
| !! | TTTTGAACTTATCCATCAAA+GGG | + | chr6_3:33397673-33397692 | None:intergenic | 25.0% |
| !! | TTTTTGAACTTATCCATCAA+AGG | + | chr6_3:33397674-33397693 | None:intergenic | 25.0% |
| ! | GGATAAGTTCAAAAATTCTA+AGG | - | chr6_3:33397679-33397698 | Msa0948700:CDS | 25.0% |
| !! | TAAAGTATCTATCTATCACA+TGG | - | chr6_3:33397800-33397819 | Msa0948700:CDS | 25.0% |
| ! | AAAACTTTATATTAGCACAC+TGG | - | chr6_3:33397823-33397842 | Msa0948700:CDS | 25.0% |
| !! | CATTGACTATATATCAATTG+TGG | + | chr6_3:33397971-33397990 | None:intergenic | 25.0% |
| ! | CACAATTGATATATAGTCAA+TGG | - | chr6_3:33397969-33397988 | Msa0948700:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr6_3:33398094-33398113 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr6_3:33398107-33398126 | None:intergenic | 25.0% |
| ! | AATTCAAACTTATATCCACA+TGG | + | chr6_3:33398170-33398189 | None:intergenic | 25.0% |
| !! | AAAAAAGTGTGTTGTGATAT+AGG | - | chr6_3:33398217-33398236 | Msa0948700:intron | 25.0% |
| !! | AAAAAGTGTGTTGTGATATA+GGG | - | chr6_3:33398218-33398237 | Msa0948700:intron | 25.0% |
| ! | GGTCAAAATAAAATAGATGT+GGG | - | chr6_3:33398239-33398258 | Msa0948700:intron | 25.0% |
| ! | CATAAACCTAATCGATAAAA+AGG | + | chr6_3:33398447-33398466 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGGTTAGAAGGT+TGG | - | chr6_3:33398858-33398877 | Msa0948700:intron | 25.0% |
| ! | CATCAAAATCAAGAAAATGA+AGG | + | chr6_3:33398967-33398986 | None:intergenic | 25.0% |
| !! | ATTAAATCTAAGGTCTAACA+TGG | - | chr6_3:33399147-33399166 | Msa0948700:intron | 25.0% |
| !! | TTAAATCTAAGGTCTAACAT+GGG | - | chr6_3:33399148-33399167 | Msa0948700:intron | 25.0% |
| !! | TTTTTATGTTAATGACAAGC+TGG | - | chr6_3:33399213-33399232 | Msa0948700:intron | 25.0% |
| !!! | TGATGGACTATGATTAAATA+AGG | - | chr6_3:33399361-33399380 | Msa0948700:intron | 25.0% |
| !!! | GATGGACTATGATTAAATAA+GGG | - | chr6_3:33399362-33399381 | Msa0948700:intron | 25.0% |
| !! | ATAGAAGACACATTTTATGA+AGG | - | chr6_3:33399390-33399409 | Msa0948700:intron | 25.0% |
| !!! | ACATCAACTTACTTTTATGA+AGG | - | chr6_3:33399452-33399471 | Msa0948700:intron | 25.0% |
| !! | TTTTAACAAGTCACATCTTA+AGG | + | chr6_3:33399518-33399537 | None:intergenic | 25.0% |
| ! | ATTGTTATCTAGGTAATAAC+TGG | + | chr6_3:33399663-33399682 | None:intergenic | 25.0% |
| !!! | GCATCTTCTAAATAGTTTTA+TGG | - | chr6_3:33399792-33399811 | Msa0948700:intron | 25.0% |
| ! | TTCTTAAATTTGATGCAGTT+AGG | - | chr6_3:33400130-33400149 | Msa0948700:intron | 25.0% |
| ! | AGAATAATACTCATGAAGAT+AGG | - | chr6_3:33400217-33400236 | Msa0948700:intron | 25.0% |
| ! | GTCTAATCATAAATCATTCT+TGG | - | chr6_3:33400311-33400330 | Msa0948700:intron | 25.0% |
| !! | TTTAGAGTCCTTTGTATATT+TGG | - | chr6_3:33400390-33400409 | Msa0948700:intron | 25.0% |
| ! | CATAAAAATTTGGTCAAACA+TGG | + | chr6_3:33400509-33400528 | None:intergenic | 25.0% |
| !! | GACCAAATTTTTATGATGTT+TGG | - | chr6_3:33400514-33400533 | Msa0948700:intron | 25.0% |
| ! | TGGTTTCACAATCAATTATT+AGG | - | chr6_3:33400562-33400581 | Msa0948700:intron | 25.0% |
| !! | AGAACCAATTTTTATCACTA+TGG | + | chr6_3:33400617-33400636 | None:intergenic | 25.0% |
| !! | AAAATCCAAAAGTATATGGT+TGG | + | chr6_3:33400852-33400871 | None:intergenic | 25.0% |
| ! | CAGTAATAACATGATTAGAT+TGG | + | chr6_3:33401322-33401341 | None:intergenic | 25.0% |
| ! | CAATCTAATCATGTTATTAC+TGG | - | chr6_3:33401320-33401339 | Msa0948700:intron | 25.0% |
| !!! | ATGTGTTTTATTAGAAATGC+GGG | + | chr6_3:33401531-33401550 | None:intergenic | 25.0% |
| !!! | CATGTGTTTTATTAGAAATG+CGG | + | chr6_3:33401532-33401551 | None:intergenic | 25.0% |
| !! | ATGAAATTATCCTTTTTGGA+AGG | + | chr6_3:33401998-33402017 | None:intergenic | 25.0% |
| !! | TTTTCTATACCTAATATCCA+AGG | + | chr6_3:33402747-33402766 | None:intergenic | 25.0% |
| !! | TTATATAAGTTCTTTTGCGT+CGG | + | chr6_3:33402852-33402871 | None:intergenic | 25.0% |
| ! | ATTAAACTCAATGACCAAAT+TGG | - | chr6_3:33402904-33402923 | Msa0948700:five_prime_UTR | 25.0% |
| !!! | GATTTTTTGCTCATATAGTA+TGG | + | chr6_3:33403037-33403056 | None:intergenic | 25.0% |
| TTATTCTTTCTGCAACTTTG+AGG | - | chr6_3:33396932-33396951 | Msa0948700:intron | 30.0% | |
| !!! | TCTGATTTTTTCACCACATA+TGG | - | chr6_3:33396974-33396993 | Msa0948700:intron | 30.0% |
| !! | AAAAAGATACCTTGGTCTTT+TGG | + | chr6_3:33397071-33397090 | None:intergenic | 30.0% |
| TGTTGGTGCAAAATATTTCA+TGG | + | chr6_3:33397146-33397165 | None:intergenic | 30.0% | |
| GAAATGCTAATAAGTGTCTT+TGG | + | chr6_3:33397577-33397596 | None:intergenic | 30.0% | |
| AAATTCATTCTTCTCTTCCA+TGG | + | chr6_3:33397623-33397642 | None:intergenic | 30.0% | |
| TTTGAACTTATCCATCAAAG+GGG | + | chr6_3:33397672-33397691 | None:intergenic | 30.0% | |
| !! | CAAAAATTCTAAGGTTTCGT+AGG | - | chr6_3:33397688-33397707 | Msa0948700:CDS | 30.0% |
| ATTCAATTATGTAGCATAGG+AGG | + | chr6_3:33397772-33397791 | None:intergenic | 30.0% | |
| TTTGAACCATAAGTATGACA+TGG | + | chr6_3:33397857-33397876 | None:intergenic | 30.0% | |
| TGTTTGATGTGTGGTATTTA+TGG | - | chr6_3:33397882-33397901 | Msa0948700:intron | 30.0% | |
| TATCATTACTCTAATCCATG+TGG | - | chr6_3:33398152-33398171 | Msa0948700:intron | 30.0% | |
| GGGTCAAAATAAAATAGATG+TGG | - | chr6_3:33398238-33398257 | Msa0948700:intron | 30.0% | |
| TCAGCTCATGTAAAATCTTA+AGG | - | chr6_3:33398562-33398581 | Msa0948700:CDS | 30.0% | |
| TTAAATTTATATGCCGTACC+TGG | - | chr6_3:33399637-33399656 | Msa0948700:CDS | 30.0% | |
| !! | CTTTTAAAAAACATGGACTC+TGG | - | chr6_3:33399742-33399761 | Msa0948700:intron | 30.0% |
| TATCTTCACTGCTGTAAAAA+AGG | - | chr6_3:33400024-33400043 | Msa0948700:intron | 30.0% | |
| TTCTTGAATGACATGAATTG+AGG | + | chr6_3:33400201-33400220 | None:intergenic | 30.0% | |
| AAACTAGGCCAAATATACAA+AGG | + | chr6_3:33400401-33400420 | None:intergenic | 30.0% | |
| TATTAGGTGAAACAACTACT+TGG | - | chr6_3:33400578-33400597 | Msa0948700:intron | 30.0% | |
| GGTTCCATAGTGATAAAAAT+TGG | - | chr6_3:33400610-33400629 | Msa0948700:intron | 30.0% | |
| ! | AATTTTTATTCCTCCAAGTG+TGG | - | chr6_3:33400824-33400843 | Msa0948700:intron | 30.0% |
| TGTTATTACTGGAATCAACA+TGG | - | chr6_3:33401331-33401350 | Msa0948700:intron | 30.0% | |
| ! | GTTACAAACTCACAAACTTT+TGG | - | chr6_3:33401362-33401381 | Msa0948700:intron | 30.0% |
| TTTGATGGAAGAACAGATAA+AGG | + | chr6_3:33401407-33401426 | None:intergenic | 30.0% | |
| TTATCTGTTCTTCCATCAAA+AGG | - | chr6_3:33401407-33401426 | Msa0948700:intron | 30.0% | |
| !! | TGTGTTTTATTAGAAATGCG+GGG | + | chr6_3:33401530-33401549 | None:intergenic | 30.0% |
| !!! | GTTTTTTGGAAGTGTACTTA+CGG | - | chr6_3:33401551-33401570 | Msa0948700:intron | 30.0% |
| TGATATGATATTGTGGAGTA+GGG | - | chr6_3:33401616-33401635 | Msa0948700:intron | 30.0% | |
| !!! | CTTTTGTTTTCTATAGGAGT+AGG | - | chr6_3:33401667-33401686 | Msa0948700:intron | 30.0% |
| ! | TATTTTCTATGACTAGGCTA+AGG | - | chr6_3:33401919-33401938 | Msa0948700:intron | 30.0% |
| AATCTCTATTCCTTCCAAAA+AGG | - | chr6_3:33401985-33402004 | Msa0948700:intron | 30.0% | |
| !!! | TGTTTTGTTGTGTTTCTAGT+TGG | - | chr6_3:33402617-33402636 | Msa0948700:intron | 30.0% |
| !! | CTTAATATGTTTTTGAGCCT+TGG | - | chr6_3:33402727-33402746 | Msa0948700:intron | 30.0% |
| TGCTATTATGTTAGCCAATT+TGG | + | chr6_3:33402921-33402940 | None:intergenic | 30.0% | |
| !!! | TCTTGTGATGTGATTTTTTG+TGG | - | chr6_3:33402964-33402983 | Msa0948700:five_prime_UTR | 30.0% |
| AAAGCAAGAGAGTAGAAGAA+AGG | + | chr6_3:33396851-33396870 | None:intergenic | 35.0% | |
| ! | AAAAGTGAAGTGTTAGGTTG+CGG | + | chr6_3:33396883-33396902 | None:intergenic | 35.0% |
| ! | ACAGAGAAAAGTGAAGTGTT+AGG | + | chr6_3:33396889-33396908 | None:intergenic | 35.0% |
| AGGAATTCTCTTTCCATATG+TGG | + | chr6_3:33396990-33397009 | None:intergenic | 35.0% | |
| CATATGGAAAGAGAATTCCT+TGG | - | chr6_3:33396990-33397009 | Msa0948700:intron | 35.0% | |
| !!! | TATTTTTGGAACTGAAGCCA+AGG | + | chr6_3:33397010-33397029 | None:intergenic | 35.0% |
| TCAGTTCCAAAAATAGTCCA+TGG | - | chr6_3:33397015-33397034 | Msa0948700:intron | 35.0% | |
| TTTCACATCCCCATAACAAT+AGG | + | chr6_3:33397169-33397188 | None:intergenic | 35.0% | |
| !!! | TTTGCTTTTTTCCCCTTTGA+TGG | - | chr6_3:33397658-33397677 | Msa0948700:CDS | 35.0% |
| ! | TCGTAGGAAGAACTTGTTTA+AGG | - | chr6_3:33397704-33397723 | Msa0948700:CDS | 35.0% |
| ! | TATATTAGCACACTGGCTAT+AGG | - | chr6_3:33397830-33397849 | Msa0948700:CDS | 35.0% |
| ! | ATATTAGCACACTGGCTATA+GGG | - | chr6_3:33397831-33397850 | Msa0948700:CDS | 35.0% |
| !! | CAAAGTTGATGTTTGATGTG+TGG | - | chr6_3:33397873-33397892 | Msa0948700:intron | 35.0% |
| !! | TCAAAGTTGATGTGTGAATG+TGG | - | chr6_3:33397906-33397925 | Msa0948700:intron | 35.0% |
| AGAGAGAAAAAGAAAGAGAG+AGG | + | chr6_3:33398071-33398090 | None:intergenic | 35.0% | |
| ! | TTTCTTTTTGATGCAATGGG+TGG | + | chr6_3:33398199-33398218 | None:intergenic | 35.0% |
| TATGTTAGAAAACGTGCTCT+TGG | - | chr6_3:33398891-33398910 | Msa0948700:intron | 35.0% | |
| TAGACTCTCATTCATACATC+AGG | + | chr6_3:33399053-33399072 | None:intergenic | 35.0% | |
| ! | TTTTGTTACAAGCCACTCTT+TGG | + | chr6_3:33399548-33399567 | None:intergenic | 35.0% |
| !! | GCAGTGGTCATTTTCAAATA+AGG | - | chr6_3:33400164-33400183 | Msa0948700:intron | 35.0% |
| TGAATGACATGAATTGAGGA+AGG | + | chr6_3:33400197-33400216 | None:intergenic | 35.0% | |
| TAGGTCAAGAAACTGTGTTA+TGG | - | chr6_3:33400236-33400255 | Msa0948700:intron | 35.0% | |
| ATATATCCAGATGAAGCTAC+TGG | + | chr6_3:33400264-33400283 | None:intergenic | 35.0% | |
| AAGAACATTGAGTGCTTGTT+AGG | - | chr6_3:33400449-33400468 | Msa0948700:intron | 35.0% | |
| !! | TGAGTGCTTGTTAGGTTTTA+AGG | - | chr6_3:33400457-33400476 | Msa0948700:intron | 35.0% |
| ! | TGGAACCAACCATATACTTT+TGG | - | chr6_3:33400844-33400863 | Msa0948700:intron | 35.0% |
| AGGATATACTCTTTCAACGT+GGG | + | chr6_3:33401093-33401112 | None:intergenic | 35.0% | |
| AAGGATATACTCTTTCAACG+TGG | + | chr6_3:33401094-33401113 | None:intergenic | 35.0% | |
| AATTTGGCCATAAAGCAAGT+AGG | - | chr6_3:33401206-33401225 | Msa0948700:intron | 35.0% | |
| CTTGTTTCCTACTTGCTTTA+TGG | + | chr6_3:33401216-33401235 | None:intergenic | 35.0% | |
| GTGATATGATATTGTGGAGT+AGG | - | chr6_3:33401615-33401634 | Msa0948700:intron | 35.0% | |
| AGGAATTGTTCCAAATCCAA+TGG | - | chr6_3:33401687-33401706 | Msa0948700:intron | 35.0% | |
| AACTGTACCACCATAGAATA+TGG | + | chr6_3:33401733-33401752 | None:intergenic | 35.0% | |
| GGTAAAAAAGTTACCTTCTC+AGG | + | chr6_3:33401777-33401796 | None:intergenic | 35.0% | |
| ! | TTATTTTCTGCAATCTGCGA+TGG | - | chr6_3:33401833-33401852 | Msa0948700:intron | 35.0% |
| ATCATGTTACTAGCTGGAAA+TGG | - | chr6_3:33401944-33401963 | Msa0948700:intron | 35.0% | |
| GTCGCAATAATAAGATCCTT+AGG | - | chr6_3:33402115-33402134 | Msa0948700:intron | 35.0% | |
| AACTTGCATGAGAAGTCATT+GGG | + | chr6_3:33402204-33402223 | None:intergenic | 35.0% | |
| AGATTCCAAATGGTTAGTAG+GGG | + | chr6_3:33402296-33402315 | None:intergenic | 35.0% | |
| GAGATTCCAAATGGTTAGTA+GGG | + | chr6_3:33402297-33402316 | None:intergenic | 35.0% | |
| CAACAATAGGAGATTCCAAA+TGG | + | chr6_3:33402306-33402325 | None:intergenic | 35.0% | |
| CCTATAGAAGTAGCAACAAT+AGG | + | chr6_3:33402319-33402338 | None:intergenic | 35.0% | |
| ! | CCTATTGTTGCTACTTCTAT+AGG | - | chr6_3:33402316-33402335 | Msa0948700:intron | 35.0% |
| TATACCTGGTTGAATCACAT+TGG | + | chr6_3:33402353-33402372 | None:intergenic | 35.0% | |
| CCATATAGACACAATATACC+TGG | + | chr6_3:33402367-33402386 | None:intergenic | 35.0% | |
| CCAGGTATATTGTGTCTATA+TGG | - | chr6_3:33402364-33402383 | Msa0948700:intron | 35.0% | |
| TTTATGGTGAAATCGCATAC+CGG | - | chr6_3:33402455-33402474 | Msa0948700:intron | 35.0% | |
| !! | GTTTTTGAGCCTTGGATATT+AGG | - | chr6_3:33402735-33402754 | Msa0948700:intron | 35.0% |
| !! | AGTTTCTCCATTGATTTCTC+TGG | - | chr6_3:33403088-33403107 | Msa0948700:intron | 35.0% |
| ACTTGAACCAGAGAAATCAA+TGG | + | chr6_3:33403098-33403117 | None:intergenic | 35.0% | |
| !! | GGTAGTCCATGGACTATTTT+TGG | + | chr6_3:33397024-33397043 | None:intergenic | 40.0% |
| TCTTCTTTCATGGTAGTCCA+TGG | + | chr6_3:33397035-33397054 | None:intergenic | 40.0% | |
| !! | GTTGGAAGCATCTTCTTTCA+TGG | + | chr6_3:33397045-33397064 | None:intergenic | 40.0% |
| TCCAACAAACCAAAAGACCA+AGG | - | chr6_3:33397059-33397078 | Msa0948700:intron | 40.0% | |
| !!! | ACCTTGGTCTTTTGGTTTGT+TGG | + | chr6_3:33397063-33397082 | None:intergenic | 40.0% |
| TGCACCAACACCTATTGTTA+TGG | - | chr6_3:33397156-33397175 | Msa0948700:intron | 40.0% | |
| GCACCAACACCTATTGTTAT+GGG | - | chr6_3:33397157-33397176 | Msa0948700:intron | 40.0% | |
| CACCAACACCTATTGTTATG+GGG | - | chr6_3:33397158-33397177 | Msa0948700:intron | 40.0% | |
| ATCCCCATAACAATAGGTGT+TGG | + | chr6_3:33397163-33397182 | None:intergenic | 40.0% | |
| ! | ATCAGGTGTCCTAAAAGCAT+TGG | - | chr6_3:33397434-33397453 | Msa0948700:intron | 40.0% |
| ATAGGGCCATGTCATACTTA+TGG | - | chr6_3:33397848-33397867 | Msa0948700:intron | 40.0% | |
| ! | AGTTGATGTGTGAATGTGGT+AGG | - | chr6_3:33397910-33397929 | Msa0948700:intron | 40.0% |
| GTTGATGTGTGAATGTGGTA+GGG | - | chr6_3:33397911-33397930 | Msa0948700:intron | 40.0% | |
| CTTGTCAGTGTGTTGTAAGA+TGG | - | chr6_3:33397942-33397961 | Msa0948700:intron | 40.0% | |
| !! | TGTGTTAGTGTTGATCAGTG+TGG | - | chr6_3:33398763-33398782 | Msa0948700:intron | 40.0% |
| TAAAAGACACCACCAAAGAG+TGG | - | chr6_3:33399533-33399552 | Msa0948700:CDS | 40.0% | |
| TATCTAGGTAATAACTGGCC+AGG | + | chr6_3:33399658-33399677 | None:intergenic | 40.0% | |
| TGATGGGGTAGATGAAGTAT+AGG | - | chr6_3:33399873-33399892 | Msa0948700:intron | 40.0% | |
| TTTGATGCAGTTAGGAGTTC+AGG | - | chr6_3:33400138-33400157 | Msa0948700:intron | 40.0% | |
| GCACTCAATGTTCTTCAACA+AGG | + | chr6_3:33400444-33400463 | None:intergenic | 40.0% | |
| !! | ACAACTACTTGGTGTGTGTT+TGG | - | chr6_3:33400589-33400608 | Msa0948700:intron | 40.0% |
| ! | TATATGGTTGGTTCCACACT+TGG | + | chr6_3:33400840-33400859 | None:intergenic | 40.0% |
| ATACTCTTTCAACGTGGGTT+AGG | + | chr6_3:33401088-33401107 | None:intergenic | 40.0% | |
| AAGCAAGTAGGAAACAAGCA+TGG | - | chr6_3:33401218-33401237 | Msa0948700:intron | 40.0% | |
| TGTGCATCAGAACTTTGCAT+AGG | + | chr6_3:33401257-33401276 | None:intergenic | 40.0% | |
| TGGAAGAACAGATAAAGGTG+TGG | + | chr6_3:33401402-33401421 | None:intergenic | 40.0% | |
| AAATGCGGGGTGGAAAATAT+TGG | + | chr6_3:33401517-33401536 | None:intergenic | 40.0% | |
| !! | GTTTTATTAGAAATGCGGGG+TGG | + | chr6_3:33401527-33401546 | None:intergenic | 40.0% |
| AGGTGTAGTACCATTGGATT+TGG | + | chr6_3:33401700-33401719 | None:intergenic | 40.0% | |
| TAGAATATGGTCAACTGAGC+AGG | + | chr6_3:33401720-33401739 | None:intergenic | 40.0% | |
| GCTCAGTTGACCATATTCTA+TGG | - | chr6_3:33401720-33401739 | Msa0948700:intron | 40.0% | |
| CAGTTGACCATATTCTATGG+TGG | - | chr6_3:33401723-33401742 | Msa0948700:intron | 40.0% | |
| CCACTGCGCTATTAAGTTTA+GGG | + | chr6_3:33401798-33401817 | None:intergenic | 40.0% | |
| TCCACTGCGCTATTAAGTTT+AGG | + | chr6_3:33401799-33401818 | None:intergenic | 40.0% | |
| AAGGCAATCATGTTACTAGC+TGG | - | chr6_3:33401938-33401957 | Msa0948700:intron | 40.0% | |
| TCATGCAAGTACTCAACCAA+GGG | - | chr6_3:33402069-33402088 | Msa0948700:intron | 40.0% | |
| ATGAGATAGGTCATTGTGAG+AGG | + | chr6_3:33402158-33402177 | None:intergenic | 40.0% | |
| GAACTTGCATGAGAAGTCAT+TGG | + | chr6_3:33402205-33402224 | None:intergenic | 40.0% | |
| TCATGCAAGTTCTTATCCCA+AGG | - | chr6_3:33402213-33402232 | Msa0948700:intron | 40.0% | |
| CATGCAAGTTCTTATCCCAA+GGG | - | chr6_3:33402214-33402233 | Msa0948700:intron | 40.0% | |
| AAATGCCCCTACTAACCATT+TGG | - | chr6_3:33402288-33402307 | Msa0948700:intron | 40.0% | |
| GGAGATTCCAAATGGTTAGT+AGG | + | chr6_3:33402298-33402317 | None:intergenic | 40.0% | |
| ! | ATACCGGTTAACGAATAGAG+AGG | - | chr6_3:33402471-33402490 | Msa0948700:intron | 40.0% |
| !! | TTTTGGAGAAGCGAAAGGAA+AGG | - | chr6_3:33402675-33402694 | Msa0948700:intron | 40.0% |
| TTTAATGTGTCACCTAGACG+CGG | - | chr6_3:33402788-33402807 | Msa0948700:CDS | 40.0% | |
| AAAACGTGCTCTTGGTTGTC+TGG | - | chr6_3:33398899-33398918 | Msa0948700:intron | 45.0% | |
| CTAAGGTCTAACATGGGCAT+TGG | - | chr6_3:33399154-33399173 | Msa0948700:intron | 45.0% | |
| ATGACAAGCTGGTTGCAAAG+AGG | - | chr6_3:33399224-33399243 | Msa0948700:intron | 45.0% | |
| TGTTACAAGCCACTCTTTGG+TGG | + | chr6_3:33399545-33399564 | None:intergenic | 45.0% | |
| AGGTAATAACTGGCCAGGTA+CGG | + | chr6_3:33399653-33399672 | None:intergenic | 45.0% | |
| TTAGGAGTTCAGGAATGCAG+TGG | - | chr6_3:33400148-33400167 | Msa0948700:intron | 45.0% | |
| ATGGATCCAGTAGCTTCATC+TGG | - | chr6_3:33400255-33400274 | Msa0948700:intron | 45.0% | |
| ATCATTCTTGGGTGTGACAC+AGG | - | chr6_3:33400323-33400342 | Msa0948700:intron | 45.0% | |
| GGTGAGACTTGAGTTTGCAA+TGG | - | chr6_3:33400478-33400497 | Msa0948700:intron | 45.0% | |
| ! | AACAGATAAAGGTGTGGCAG+AGG | + | chr6_3:33401396-33401415 | None:intergenic | 45.0% |
| ! | CCAACTATGGGACCTTTTGA+TGG | + | chr6_3:33401422-33401441 | None:intergenic | 45.0% |
| CCATCAAAAGGTCCCATAGT+TGG | - | chr6_3:33401419-33401438 | Msa0948700:intron | 45.0% | |
| AGGTCAGTAGAGCCAACTAT+GGG | + | chr6_3:33401434-33401453 | None:intergenic | 45.0% | |
| TAGGTCAGTAGAGCCAACTA+TGG | + | chr6_3:33401435-33401454 | None:intergenic | 45.0% | |
| !! | TAGTTGGCTCTACTGACCTA+AGG | - | chr6_3:33401435-33401454 | Msa0948700:intron | 45.0% |
| TGATGACATCTCTCCTGAGA+AGG | - | chr6_3:33401761-33401780 | Msa0948700:intron | 45.0% | |
| CCCTAAACTTAATAGCGCAG+TGG | - | chr6_3:33401795-33401814 | Msa0948700:intron | 45.0% | |
| CATGAGAGGTCATTGGAAGA+GGG | + | chr6_3:33402054-33402073 | None:intergenic | 45.0% | |
| GTACTTGCATGAGAGGTCAT+TGG | + | chr6_3:33402061-33402080 | None:intergenic | 45.0% | |
| TGGTTGAGTACTTGCATGAG+AGG | + | chr6_3:33402068-33402087 | None:intergenic | 45.0% | |
| CTCATGCAAGTACTCAACCA+AGG | - | chr6_3:33402068-33402087 | Msa0948700:intron | 45.0% | |
| CATGCAAGTACTCAACCAAG+GGG | - | chr6_3:33402070-33402089 | Msa0948700:intron | 45.0% | |
| CTTGGCAATTGAAGGTCCTA+AGG | + | chr6_3:33402134-33402153 | None:intergenic | 45.0% | |
| TGAGAGGACTTGGCAATTGA+AGG | + | chr6_3:33402142-33402161 | None:intergenic | 45.0% | |
| TAGGTCATTGTGAGAGGACT+TGG | + | chr6_3:33402152-33402171 | None:intergenic | 45.0% | |
| GCAAAGGTGAGAGATGAGAT+AGG | + | chr6_3:33402171-33402190 | None:intergenic | 45.0% | |
| ATTGGGAGAGAACTTGGCAA+AGG | + | chr6_3:33402187-33402206 | None:intergenic | 45.0% | |
| GAAGTCATTGGGAGAGAACT+TGG | + | chr6_3:33402193-33402212 | None:intergenic | 45.0% | |
| ! | TTGCTACTTGAACCTCCCTT+GGG | + | chr6_3:33402232-33402251 | None:intergenic | 45.0% |
| !! | TGGTTAGTAGGGGCATTTGA+AGG | + | chr6_3:33402286-33402305 | None:intergenic | 45.0% |
| CCTGGTTGAATCACATTGGT+AGG | + | chr6_3:33402349-33402368 | None:intergenic | 45.0% | |
| CCTACCAATGTGATTCAACC+AGG | - | chr6_3:33402346-33402365 | Msa0948700:intron | 45.0% | |
| CGACCTCTCTATTCGTTAAC+CGG | + | chr6_3:33402477-33402496 | None:intergenic | 45.0% | |
| !! | TCGGTTTTTGGAGAAGCGAA+AGG | - | chr6_3:33402670-33402689 | Msa0948700:intron | 45.0% |
| AAATCACCTGAATGCAGCAC+TGG | - | chr6_3:33403052-33403071 | Msa0948700:intron | 45.0% | |
| !! | GTAAATATATATAAAAAAAA+AGG | + | chr6_3:33396779-33396798 | None:intergenic | 5.0% |
| !!! | TGTTTTTTTTTATATATATT+TGG | - | chr6_3:33397252-33397271 | Msa0948700:intron | 5.0% |
| !!! | GTTTTTTTTTATATATATTT+GGG | - | chr6_3:33397253-33397272 | Msa0948700:intron | 5.0% |
| !! | TATATAAATATTAAATGAAA+TGG | + | chr6_3:33398716-33398735 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTATTTTGA+TGG | - | chr6_3:33399856-33399875 | Msa0948700:intron | 5.0% |
| !!! | TTTTATTTATTTATTTTGAT+GGG | - | chr6_3:33399857-33399876 | Msa0948700:intron | 5.0% |
| !!! | CTTATATAATTTTTTAATTT+CGG | - | chr6_3:33402863-33402882 | Msa0948700:five_prime_UTR | 5.0% |
| ! | ATGGTTGGTTCCACACTTGG+AGG | + | chr6_3:33400837-33400856 | None:intergenic | 50.0% |
| CTGAGCAGGTGTAGTACCAT+TGG | + | chr6_3:33401706-33401725 | None:intergenic | 50.0% | |
| CTTGGCAATGGTGAGGGATA+GGG | + | chr6_3:33402031-33402050 | None:intergenic | 50.0% | |
| ATTGGAAGAGGGCTTGGCAA+TGG | + | chr6_3:33402043-33402062 | None:intergenic | 50.0% | |
| GCATGAGAGGTCATTGGAAG+AGG | + | chr6_3:33402055-33402074 | None:intergenic | 50.0% | |
| ! | TTGCTACTTGAACCTCCCCT+TGG | + | chr6_3:33402088-33402107 | None:intergenic | 50.0% |
| GCAAGTTCTTATCCCAAGGG+AGG | - | chr6_3:33402217-33402236 | Msa0948700:intron | 50.0% | |
| ! | GTTGCTACTTGAACCTCCCT+TGG | + | chr6_3:33402233-33402252 | None:intergenic | 50.0% |
| !!! | AGCATCGCTGACTCGGTTTT+TGG | - | chr6_3:33402658-33402677 | Msa0948700:intron | 50.0% |
| TCTGATCCAGTGCTGCATTC+AGG | + | chr6_3:33403061-33403080 | None:intergenic | 50.0% | |
| ACGTGCTCTTGGTTGTCTGG+TGG | - | chr6_3:33398902-33398921 | Msa0948700:intron | 55.0% | |
| GCAATGGTGAGGGATAGGGT+TGG | + | chr6_3:33402027-33402046 | None:intergenic | 55.0% | |
| GCTTGGCAATGGTGAGGGAT+AGG | + | chr6_3:33402032-33402051 | None:intergenic | 55.0% | |
| AGAGGGCTTGGCAATGGTGA+GGG | + | chr6_3:33402037-33402056 | None:intergenic | 55.0% | |
| AAGAGGGCTTGGCAATGGTG+AGG | + | chr6_3:33402038-33402057 | None:intergenic | 55.0% | |
| GAGGTCATTGGAAGAGGGCT+TGG | + | chr6_3:33402049-33402068 | None:intergenic | 55.0% | |
| GCAAGTACTCAACCAAGGGG+AGG | - | chr6_3:33402073-33402092 | Msa0948700:intron | 55.0% | |
| ! | AGCGATGCTTTTCGCGCTTG+AGG | + | chr6_3:33402647-33402666 | None:intergenic | 55.0% |
| !! | CGCGAAAAGCATCGCTGACT+CGG | - | chr6_3:33402651-33402670 | Msa0948700:intron | 55.0% |
| ATTGACGAGTCTCCGCGTCT+AGG | + | chr6_3:33402803-33402822 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 33396697 | 33403120 | 33396697 | ID=Msa0948700;Name=Msa0948700 |
| chr6_3 | mRNA | 33396697 | 33403120 | 33396697 | ID=Msa0948700-mRNA-1;Parent=Msa0948700;Name=Msa0948700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=242|0.5|0.57|1|0.83|0.71|7|95|351 |
| chr6_3 | exon | 33396697 | 33396799 | 33396697 | ID=Msa0948700-mRNA-1:exon:8642;Parent=Msa0948700-mRNA-1 |
| chr6_3 | exon | 33397450 | 33397860 | 33397450 | ID=Msa0948700-mRNA-1:exon:8641;Parent=Msa0948700-mRNA-1 |
| chr6_3 | exon | 33398073 | 33398134 | 33398073 | ID=Msa0948700-mRNA-1:exon:8640;Parent=Msa0948700-mRNA-1 |
| chr6_3 | exon | 33398361 | 33398614 | 33398361 | ID=Msa0948700-mRNA-1:exon:8639;Parent=Msa0948700-mRNA-1 |
| chr6_3 | exon | 33399473 | 33399705 | 33399473 | ID=Msa0948700-mRNA-1:exon:8638;Parent=Msa0948700-mRNA-1 |
| chr6_3 | exon | 33402737 | 33403050 | 33402737 | ID=Msa0948700-mRNA-1:exon:8637;Parent=Msa0948700-mRNA-1 |
| chr6_3 | exon | 33403105 | 33403120 | 33403105 | ID=Msa0948700-mRNA-1:exon:8636;Parent=Msa0948700-mRNA-1 |
| chr6_3 | five_prime_UTR | 33403105 | 33403120 | 33403105 | ID=Msa0948700-mRNA-1:five_prime_utr;Parent=Msa0948700-mRNA-1 |
| chr6_3 | five_prime_UTR | 33402825 | 33403050 | 33402825 | ID=Msa0948700-mRNA-1:five_prime_utr;Parent=Msa0948700-mRNA-1 |
| chr6_3 | CDS | 33402737 | 33402824 | 33402737 | ID=Msa0948700-mRNA-1:cds;Parent=Msa0948700-mRNA-1 |
| chr6_3 | CDS | 33399473 | 33399705 | 33399473 | ID=Msa0948700-mRNA-1:cds;Parent=Msa0948700-mRNA-1 |
| chr6_3 | CDS | 33398361 | 33398614 | 33398361 | ID=Msa0948700-mRNA-1:cds;Parent=Msa0948700-mRNA-1 |
| chr6_3 | CDS | 33398073 | 33398134 | 33398073 | ID=Msa0948700-mRNA-1:cds;Parent=Msa0948700-mRNA-1 |
| chr6_3 | CDS | 33397450 | 33397860 | 33397450 | ID=Msa0948700-mRNA-1:cds;Parent=Msa0948700-mRNA-1 |
| chr6_3 | CDS | 33396792 | 33396799 | 33396792 | ID=Msa0948700-mRNA-1:cds;Parent=Msa0948700-mRNA-1 |
| chr6_3 | three_prime_UTR | 33396697 | 33396791 | 33396697 | ID=Msa0948700-mRNA-1:three_prime_utr;Parent=Msa0948700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
