Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895080 | XP_013452135.1 | 90.828 | 338 | 13 | 2 | 4 | 329 | 207 | 538 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895080 | sp|Q10SY9|LSI2_ORYSJ | 59.606 | 203 | 69 | 2 | 139 | 328 | 267 | 469 | 2.05e-75 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895080 | A0A072UAN3 | 90.828 | 338 | 13 | 2 | 4 | 329 | 207 | 538 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715110 | Msa0895080 | 0.802243 | 6.152466e-49 | -8.615850e-47 |
| Msa0895080 | Msa0952020 | 0.873324 | 1.605629e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895080 | MtrunA17_Chr6g0467831 | 90.828 | 338 | 13 | 2 | 4 | 329 | 207 | 538 | 0.0 | 593 |
| Msa0895080 | MtrunA17_Chr8g0352841 | 87.190 | 242 | 31 | 0 | 4 | 245 | 207 | 448 | 1.06e-155 | 444 |
| Msa0895080 | MtrunA17_Chr8g0352851 | 97.590 | 83 | 2 | 0 | 247 | 329 | 16 | 98 | 3.30e-44 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895080 | AT1G02260.2 | 53.936 | 343 | 94 | 9 | 4 | 329 | 207 | 502 | 4.67e-107 | 322 |
| Msa0895080 | AT1G02260.1 | 53.936 | 343 | 94 | 9 | 4 | 329 | 207 | 502 | 4.67e-107 | 322 |
Find 59 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATTCCAAGTGCTTTA+TGG | 0.120821 | 6_1:-81804983 | Msa0895080:CDS |
| TTCTGGAGTCATTTGAAATT+TGG | 0.188552 | 6_1:-81804002 | Msa0895080:CDS |
| GAACGATCAACTCGCGAATA+AGG | 0.283924 | 6_1:+81804948 | None:intergenic |
| TGTGTTTATATGATCACATT+AGG | 0.308469 | 6_1:-81805271 | Msa0895080:CDS |
| TGGAATTCCAAGTGCTTTAT+GGG | 0.317249 | 6_1:-81804982 | Msa0895080:CDS |
| TATCATACACATTGACATTC+TGG | 0.318666 | 6_1:-81804019 | Msa0895080:CDS |
| ACTATTATAGTCACTGCTAT+TGG | 0.340356 | 6_1:-81803969 | Msa0895080:CDS |
| AGCAGGGAACCTGTCACTAT+TGG | 0.345978 | 6_1:-81804093 | Msa0895080:CDS |
| AAGTGCTTTATGGGAGTTGA+TGG | 0.347243 | 6_1:-81804973 | Msa0895080:CDS |
| ATGAGAATTAACATCTTCTT+CGG | 0.399358 | 6_1:+81805657 | None:intergenic |
| TATGTCGTGGACTGCAATTT+CGG | 0.400089 | 6_1:-81805218 | Msa0895080:CDS |
| ATGTTGTTTGCAATGCTTCT+TGG | 0.406994 | 6_1:-81805247 | Msa0895080:CDS |
| TCGGCTGCAACTTCCGCAAT+CGG | 0.412918 | 6_1:+81805676 | None:intergenic |
| GTAGACGGATTCAACAAAAC+TGG | 0.421350 | 6_1:-81805002 | Msa0895080:CDS |
| TTTCCCAAGAAGACGAGAAA+AGG | 0.423803 | 6_1:-81804148 | Msa0895080:CDS |
| AGAATGTCAATGTGTATGAT+AGG | 0.432270 | 6_1:+81804021 | None:intergenic |
| CGAGTGATAGTGAAATTGAT+AGG | 0.432770 | 6_1:-81805504 | Msa0895080:CDS |
| GCAGGGAACCTGTCACTATT+GGG | 0.435913 | 6_1:-81804092 | Msa0895080:CDS |
| GAAAAGGGCATGGCTCATAT+TGG | 0.444360 | 6_1:-81804132 | Msa0895080:CDS |
| CTTAATTCTCAAGAGTTGAA+TGG | 0.444464 | 6_1:-81805595 | Msa0895080:CDS |
| TTTAGTACCTTCTCTAAACT+TGG | 0.448984 | 6_1:+81805154 | None:intergenic |
| AATTTCGGCTGCATTAGCTT+TGG | 0.452114 | 6_1:-81805203 | Msa0895080:CDS |
| CACTATCACTCGAAACCAAT+CGG | 0.456680 | 6_1:+81805515 | None:intergenic |
| GATGTAGATAGAACAATAGA+AGG | 0.460098 | 6_1:-81805364 | Msa0895080:CDS |
| GTCAATGTGTATGATAGGTT+TGG | 0.462325 | 6_1:+81804026 | None:intergenic |
| GCTTGGGTCAGCACTATAGC+AGG | 0.474992 | 6_1:-81804110 | Msa0895080:CDS |
| GGCATGGCTCATATTGGCTT+GGG | 0.482781 | 6_1:-81804126 | Msa0895080:CDS |
| GGGCATGGCTCATATTGGCT+TGG | 0.487511 | 6_1:-81804127 | Msa0895080:CDS |
| TAGAAATTCAACTGCATCAA+AGG | 0.493023 | 6_1:-81805452 | Msa0895080:CDS |
| CTCCTCAAGTTCATAATCTA+CGG | 0.501565 | 6_1:-81805540 | Msa0895080:CDS |
| TTCCCAAGAAGACGAGAAAA+GGG | 0.509066 | 6_1:-81804147 | Msa0895080:CDS |
| TTGGGAAATTGCAGCTGCTG+AGG | 0.511779 | 6_1:+81804163 | None:intergenic |
| GCAGTGACTATAATAGTTGA+AGG | 0.517685 | 6_1:+81803975 | None:intergenic |
| CAGCTGATCCCAATAGTGAC+AGG | 0.519036 | 6_1:+81804084 | None:intergenic |
| TGACTTGGCATCTCAAACAA+AGG | 0.524594 | 6_1:-81805416 | Msa0895080:CDS |
| TTTGATCTCTTCGGAAGGAA+AGG | 0.533553 | 6_1:-81805335 | Msa0895080:CDS |
| GAATAATGAGACATTGTAGC+TGG | 0.539645 | 6_1:+81805625 | None:intergenic |
| AATTCAACTGCATCAAAGGA+AGG | 0.540567 | 6_1:-81805448 | Msa0895080:CDS |
| ATCAACTCCCATAAAGCACT+TGG | 0.541024 | 6_1:+81804975 | None:intergenic |
| TTCTTGATTTCAAAGATGCT+AGG | 0.551545 | 6_1:-81805177 | Msa0895080:CDS |
| TCATAATCTACGGAACCGAT+TGG | 0.551964 | 6_1:-81805530 | Msa0895080:CDS |
| TTCCGTAGATTATGAACTTG+AGG | 0.560669 | 6_1:+81805538 | None:intergenic |
| GAAATTGATAGGTTTCATGT+TGG | 0.561498 | 6_1:-81805493 | Msa0895080:CDS |
| CTGAGTGGAAGCGTAGGTTG+TGG | 0.562531 | 6_1:-81805300 | Msa0895080:CDS |
| TTCTTGGTTTAAATATGTCG+TGG | 0.568745 | 6_1:-81805231 | Msa0895080:CDS |
| GGAATGTTTATCACAGTAGA+CGG | 0.571373 | 6_1:-81805017 | Msa0895080:CDS |
| GGAAGGGACTAATAATGACT+TGG | 0.586286 | 6_1:-81805431 | Msa0895080:CDS |
| TGCTAGGCCAAGTTTAGAGA+AGG | 0.593210 | 6_1:-81805161 | Msa0895080:intron |
| AGATATCGAGGATCCGATTG+CGG | 0.601914 | 6_1:-81805689 | Msa0895080:CDS |
| ATCTATTCATAAAGATATCG+AGG | 0.627397 | 6_1:-81805701 | Msa0895080:CDS |
| ATTCAACTGCATCAAAGGAA+GGG | 0.631032 | 6_1:-81805447 | Msa0895080:CDS |
| CAGTGACTATAATAGTTGAA+GGG | 0.641516 | 6_1:+81803976 | None:intergenic |
| TAAGCGCTGAGTGGAAGCGT+AGG | 0.644623 | 6_1:-81805306 | Msa0895080:CDS |
| ATGTAGATAGAACAATAGAA+GGG | 0.645691 | 6_1:-81805363 | Msa0895080:CDS |
| AGTGGAATAGCGATCAAATG+TGG | 0.648670 | 6_1:-81804924 | Msa0895080:CDS |
| AAGAAGACGAGAAAAGGGCA+TGG | 0.651383 | 6_1:-81804142 | Msa0895080:CDS |
| CTTGGCATCTCAAACAAAGG+AGG | 0.666280 | 6_1:-81805413 | Msa0895080:CDS |
| AGGACTATTTAAGCGCTGAG+TGG | 0.675012 | 6_1:-81805315 | Msa0895080:CDS |
| CTTGGGTCAGCACTATAGCA+GGG | 0.686858 | 6_1:-81804109 | Msa0895080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTCTAAAATTTTCA+AGG | + | chr6_1:81805384-81805403 | None:intergenic | 15.0% |
| !!! | TTTTAACTCTAAAATTTTCA+AGG | + | chr6_1:81805384-81805403 | None:intergenic | 15.0% |
| !!! | ATTCTTTTTTTTTTCTTCGT+AGG | - | chr6_1:81804941-81804960 | Msa0895080:CDS | 20.0% |
| !! | ATCATTAATCTCCAATTTAA+AGG | - | chr6_1:81804965-81804984 | Msa0895080:CDS | 20.0% |
| !!! | ATTTGATTTCACCTTTAAAT+TGG | + | chr6_1:81804979-81804998 | None:intergenic | 20.0% |
| !! | TAAAAATGTAAACACAAGAT+TGG | + | chr6_1:81805449-81805468 | None:intergenic | 20.0% |
| !!! | ATTTTTATAGTACTATTGCT+TGG | - | chr6_1:81805462-81805481 | Msa0895080:CDS | 20.0% |
| !!! | ATTCTTTTTTTTTTCTTCGT+AGG | - | chr6_1:81804941-81804960 | Msa0895080:CDS | 20.0% |
| !! | ATCATTAATCTCCAATTTAA+AGG | - | chr6_1:81804965-81804984 | Msa0895080:CDS | 20.0% |
| !!! | ATTTGATTTCACCTTTAAAT+TGG | + | chr6_1:81804979-81804998 | None:intergenic | 20.0% |
| !! | TAAAAATGTAAACACAAGAT+TGG | + | chr6_1:81805449-81805468 | None:intergenic | 20.0% |
| !!! | ATTTTTATAGTACTATTGCT+TGG | - | chr6_1:81805462-81805481 | Msa0895080:CDS | 20.0% |
| ! | ATCTATTCATAAAGATATCG+AGG | - | chr6_1:81803961-81803980 | Msa0895080:CDS | 25.0% |
| ! | ATGAGAATTAACATCTTCTT+CGG | + | chr6_1:81804008-81804027 | None:intergenic | 25.0% |
| ! | ATGTAGATAGAACAATAGAA+GGG | - | chr6_1:81804299-81804318 | Msa0895080:intron | 25.0% |
| ! | TGTGTTTATATGATCACATT+AGG | - | chr6_1:81804391-81804410 | Msa0895080:intron | 25.0% |
| ! | ACTAAAAAACTATGAACACT+TGG | - | chr6_1:81804525-81804544 | Msa0895080:intron | 25.0% |
| !!! | AATTTTTCTCTTGTTTCTAC+AGG | - | chr6_1:81804593-81804612 | Msa0895080:intron | 25.0% |
| !!! | TCACTTTTGATATTCTTTTG+TGG | - | chr6_1:81804624-81804643 | Msa0895080:intron | 25.0% |
| ! | CTTCAGTTTCTAAATTGTAA+GGG | + | chr6_1:81804852-81804871 | None:intergenic | 25.0% |
| ! | TCTTCAGTTTCTAAATTGTA+AGG | + | chr6_1:81804853-81804872 | None:intergenic | 25.0% |
| ! | TTATGTTAGTGTTGTGAAAT+AGG | - | chr6_1:81805012-81805031 | Msa0895080:CDS | 25.0% |
| !!! | AAATTTTCAAGGAAATGAAG+AGG | + | chr6_1:81805373-81805392 | None:intergenic | 25.0% |
| ! | ATCTATTCATAAAGATATCG+AGG | - | chr6_1:81803961-81803980 | Msa0895080:CDS | 25.0% |
| ! | ATGAGAATTAACATCTTCTT+CGG | + | chr6_1:81804008-81804027 | None:intergenic | 25.0% |
| ! | ATGTAGATAGAACAATAGAA+GGG | - | chr6_1:81804299-81804318 | Msa0895080:intron | 25.0% |
| ! | TGTGTTTATATGATCACATT+AGG | - | chr6_1:81804391-81804410 | Msa0895080:intron | 25.0% |
| ! | ACTAAAAAACTATGAACACT+TGG | - | chr6_1:81804525-81804544 | Msa0895080:intron | 25.0% |
| !!! | AATTTTTCTCTTGTTTCTAC+AGG | - | chr6_1:81804593-81804612 | Msa0895080:intron | 25.0% |
| !!! | TCACTTTTGATATTCTTTTG+TGG | - | chr6_1:81804624-81804643 | Msa0895080:intron | 25.0% |
| ! | CTTCAGTTTCTAAATTGTAA+GGG | + | chr6_1:81804852-81804871 | None:intergenic | 25.0% |
| ! | TCTTCAGTTTCTAAATTGTA+AGG | + | chr6_1:81804853-81804872 | None:intergenic | 25.0% |
| ! | TTATGTTAGTGTTGTGAAAT+AGG | - | chr6_1:81805012-81805031 | Msa0895080:CDS | 25.0% |
| !!! | AAATTTTCAAGGAAATGAAG+AGG | + | chr6_1:81805373-81805392 | None:intergenic | 25.0% |
| CTTAATTCTCAAGAGTTGAA+TGG | - | chr6_1:81804067-81804086 | Msa0895080:CDS | 30.0% | |
| GAAATTGATAGGTTTCATGT+TGG | - | chr6_1:81804169-81804188 | Msa0895080:CDS | 30.0% | |
| TAGAAATTCAACTGCATCAA+AGG | - | chr6_1:81804210-81804229 | Msa0895080:intron | 30.0% | |
| GATGTAGATAGAACAATAGA+AGG | - | chr6_1:81804298-81804317 | Msa0895080:intron | 30.0% | |
| TTCTTGGTTTAAATATGTCG+TGG | - | chr6_1:81804431-81804450 | Msa0895080:intron | 30.0% | |
| TTCTTGATTTCAAAGATGCT+AGG | - | chr6_1:81804485-81804504 | Msa0895080:intron | 30.0% | |
| TTTAGTACCTTCTCTAAACT+TGG | + | chr6_1:81804511-81804530 | None:intergenic | 30.0% | |
| AGTTTCTAAATTGTAAGGGT+AGG | + | chr6_1:81804848-81804867 | None:intergenic | 30.0% | |
| ACATAAAATCATATGACGTG+TGG | + | chr6_1:81804880-81804899 | None:intergenic | 30.0% | |
| TAATTGAATGCATCAACTTG+TGG | - | chr6_1:81804899-81804918 | Msa0895080:intron | 30.0% | |
| TTCACAACACTAACATAACA+TGG | + | chr6_1:81805010-81805029 | None:intergenic | 30.0% | |
| GTTCAACTATGTTTCAACTA+TGG | - | chr6_1:81805151-81805170 | Msa0895080:intron | 30.0% | |
| GGAAATGAAGAGGAAATATT+TGG | + | chr6_1:81805363-81805382 | None:intergenic | 30.0% | |
| AGAATGTCAATGTGTATGAT+AGG | + | chr6_1:81805644-81805663 | None:intergenic | 30.0% | |
| TATCATACACATTGACATTC+TGG | - | chr6_1:81805643-81805662 | Msa0895080:CDS | 30.0% | |
| !! | TTCTGGAGTCATTTGAAATT+TGG | - | chr6_1:81805660-81805679 | Msa0895080:CDS | 30.0% |
| CAGTGACTATAATAGTTGAA+GGG | + | chr6_1:81805689-81805708 | None:intergenic | 30.0% | |
| ACTATTATAGTCACTGCTAT+TGG | - | chr6_1:81805693-81805712 | Msa0895080:CDS | 30.0% | |
| CTTAATTCTCAAGAGTTGAA+TGG | - | chr6_1:81804067-81804086 | Msa0895080:CDS | 30.0% | |
| GAAATTGATAGGTTTCATGT+TGG | - | chr6_1:81804169-81804188 | Msa0895080:CDS | 30.0% | |
| TAGAAATTCAACTGCATCAA+AGG | - | chr6_1:81804210-81804229 | Msa0895080:intron | 30.0% | |
| GATGTAGATAGAACAATAGA+AGG | - | chr6_1:81804298-81804317 | Msa0895080:intron | 30.0% | |
| TTCTTGGTTTAAATATGTCG+TGG | - | chr6_1:81804431-81804450 | Msa0895080:intron | 30.0% | |
| TTCTTGATTTCAAAGATGCT+AGG | - | chr6_1:81804485-81804504 | Msa0895080:intron | 30.0% | |
| TTTAGTACCTTCTCTAAACT+TGG | + | chr6_1:81804511-81804530 | None:intergenic | 30.0% | |
| AGTTTCTAAATTGTAAGGGT+AGG | + | chr6_1:81804848-81804867 | None:intergenic | 30.0% | |
| ACATAAAATCATATGACGTG+TGG | + | chr6_1:81804880-81804899 | None:intergenic | 30.0% | |
| TAATTGAATGCATCAACTTG+TGG | - | chr6_1:81804899-81804918 | Msa0895080:intron | 30.0% | |
| TTCACAACACTAACATAACA+TGG | + | chr6_1:81805010-81805029 | None:intergenic | 30.0% | |
| GTTCAACTATGTTTCAACTA+TGG | - | chr6_1:81805151-81805170 | Msa0895080:intron | 30.0% | |
| GGAAATGAAGAGGAAATATT+TGG | + | chr6_1:81805363-81805382 | None:intergenic | 30.0% | |
| AGAATGTCAATGTGTATGAT+AGG | + | chr6_1:81805644-81805663 | None:intergenic | 30.0% | |
| TATCATACACATTGACATTC+TGG | - | chr6_1:81805643-81805662 | Msa0895080:CDS | 30.0% | |
| !! | TTCTGGAGTCATTTGAAATT+TGG | - | chr6_1:81805660-81805679 | Msa0895080:CDS | 30.0% |
| CAGTGACTATAATAGTTGAA+GGG | + | chr6_1:81805689-81805708 | None:intergenic | 30.0% | |
| ACTATTATAGTCACTGCTAT+TGG | - | chr6_1:81805693-81805712 | Msa0895080:CDS | 30.0% | |
| GAATAATGAGACATTGTAGC+TGG | + | chr6_1:81804040-81804059 | None:intergenic | 35.0% | |
| CTCCTCAAGTTCATAATCTA+CGG | - | chr6_1:81804122-81804141 | Msa0895080:CDS | 35.0% | |
| TTCCGTAGATTATGAACTTG+AGG | + | chr6_1:81804127-81804146 | None:intergenic | 35.0% | |
| ! | CGAGTGATAGTGAAATTGAT+AGG | - | chr6_1:81804158-81804177 | Msa0895080:CDS | 35.0% |
| AATTCAACTGCATCAAAGGA+AGG | - | chr6_1:81804214-81804233 | Msa0895080:intron | 35.0% | |
| ATTCAACTGCATCAAAGGAA+GGG | - | chr6_1:81804215-81804234 | Msa0895080:intron | 35.0% | |
| ! | ATGTTGTTTGCAATGCTTCT+TGG | - | chr6_1:81804415-81804434 | Msa0895080:intron | 35.0% |
| GGAATGTTTATCACAGTAGA+CGG | - | chr6_1:81804645-81804664 | Msa0895080:intron | 35.0% | |
| TGGAATTCCAAGTGCTTTAT+GGG | - | chr6_1:81804680-81804699 | Msa0895080:intron | 35.0% | |
| ATAATCATTCACTTACCGGT+TGG | + | chr6_1:81804775-81804794 | None:intergenic | 35.0% | |
| CCTGATAATCATTCACTTAC+CGG | + | chr6_1:81804779-81804798 | None:intergenic | 35.0% | |
| AATGATTATCAGGTTCTCTG+TGG | - | chr6_1:81804786-81804805 | Msa0895080:intron | 35.0% | |
| TTGTTAACTACGGTTCTGTT+TGG | + | chr6_1:81805086-81805105 | None:intergenic | 35.0% | |
| AACAGAACCGTAGTTAACAA+TGG | - | chr6_1:81805086-81805105 | Msa0895080:intron | 35.0% | |
| GAACCAACCATTGTTAACTA+CGG | + | chr6_1:81805096-81805115 | None:intergenic | 35.0% | |
| !! | TTAACAATGGTTGGTTCGTT+CGG | - | chr6_1:81805099-81805118 | Msa0895080:intron | 35.0% |
| CTTCTGAATCATGGTTCAAT+TGG | + | chr6_1:81805182-81805201 | None:intergenic | 35.0% | |
| GATACATCAGATCGAAAAGA+TGG | + | chr6_1:81805421-81805440 | None:intergenic | 35.0% | |
| GTCAATGTGTATGATAGGTT+TGG | + | chr6_1:81805639-81805658 | None:intergenic | 35.0% | |
| GCAGTGACTATAATAGTTGA+AGG | + | chr6_1:81805690-81805709 | None:intergenic | 35.0% | |
| GAATAATGAGACATTGTAGC+TGG | + | chr6_1:81804040-81804059 | None:intergenic | 35.0% | |
| CTCCTCAAGTTCATAATCTA+CGG | - | chr6_1:81804122-81804141 | Msa0895080:CDS | 35.0% | |
| TTCCGTAGATTATGAACTTG+AGG | + | chr6_1:81804127-81804146 | None:intergenic | 35.0% | |
| ! | CGAGTGATAGTGAAATTGAT+AGG | - | chr6_1:81804158-81804177 | Msa0895080:CDS | 35.0% |
| AATTCAACTGCATCAAAGGA+AGG | - | chr6_1:81804214-81804233 | Msa0895080:intron | 35.0% | |
| ATTCAACTGCATCAAAGGAA+GGG | - | chr6_1:81804215-81804234 | Msa0895080:intron | 35.0% | |
| ! | ATGTTGTTTGCAATGCTTCT+TGG | - | chr6_1:81804415-81804434 | Msa0895080:intron | 35.0% |
| GGAATGTTTATCACAGTAGA+CGG | - | chr6_1:81804645-81804664 | Msa0895080:intron | 35.0% | |
| TGGAATTCCAAGTGCTTTAT+GGG | - | chr6_1:81804680-81804699 | Msa0895080:intron | 35.0% | |
| ATAATCATTCACTTACCGGT+TGG | + | chr6_1:81804775-81804794 | None:intergenic | 35.0% | |
| CCTGATAATCATTCACTTAC+CGG | + | chr6_1:81804779-81804798 | None:intergenic | 35.0% | |
| AATGATTATCAGGTTCTCTG+TGG | - | chr6_1:81804786-81804805 | Msa0895080:intron | 35.0% | |
| TTGTTAACTACGGTTCTGTT+TGG | + | chr6_1:81805086-81805105 | None:intergenic | 35.0% | |
| AACAGAACCGTAGTTAACAA+TGG | - | chr6_1:81805086-81805105 | Msa0895080:intron | 35.0% | |
| GAACCAACCATTGTTAACTA+CGG | + | chr6_1:81805096-81805115 | None:intergenic | 35.0% | |
| !! | TTAACAATGGTTGGTTCGTT+CGG | - | chr6_1:81805099-81805118 | Msa0895080:intron | 35.0% |
| CTTCTGAATCATGGTTCAAT+TGG | + | chr6_1:81805182-81805201 | None:intergenic | 35.0% | |
| GATACATCAGATCGAAAAGA+TGG | + | chr6_1:81805421-81805440 | None:intergenic | 35.0% | |
| GTCAATGTGTATGATAGGTT+TGG | + | chr6_1:81805639-81805658 | None:intergenic | 35.0% | |
| GCAGTGACTATAATAGTTGA+AGG | + | chr6_1:81805690-81805709 | None:intergenic | 35.0% | |
| TCATAATCTACGGAACCGAT+TGG | - | chr6_1:81804132-81804151 | Msa0895080:CDS | 40.0% | |
| CACTATCACTCGAAACCAAT+CGG | + | chr6_1:81804150-81804169 | None:intergenic | 40.0% | |
| GGAAGGGACTAATAATGACT+TGG | - | chr6_1:81804231-81804250 | Msa0895080:intron | 40.0% | |
| ! | TGACTTGGCATCTCAAACAA+AGG | - | chr6_1:81804246-81804265 | Msa0895080:intron | 40.0% |
| ! | ACATCGACAACAGTTTTCGA+CGG | + | chr6_1:81804283-81804302 | None:intergenic | 40.0% |
| !!! | AGGGCATGTTTTGATCTCTT+CGG | - | chr6_1:81804318-81804337 | Msa0895080:intron | 40.0% |
| !!! | CATGTTTTGATCTCTTCGGA+AGG | - | chr6_1:81804322-81804341 | Msa0895080:intron | 40.0% |
| TTTGATCTCTTCGGAAGGAA+AGG | - | chr6_1:81804327-81804346 | Msa0895080:intron | 40.0% | |
| ! | TATGTCGTGGACTGCAATTT+CGG | - | chr6_1:81804444-81804463 | Msa0895080:intron | 40.0% |
| ! | AATTTCGGCTGCATTAGCTT+TGG | - | chr6_1:81804459-81804478 | Msa0895080:intron | 40.0% |
| ! | GTAGACGGATTCAACAAAAC+TGG | - | chr6_1:81804660-81804679 | Msa0895080:intron | 40.0% |
| CTGGAATTCCAAGTGCTTTA+TGG | - | chr6_1:81804679-81804698 | Msa0895080:intron | 40.0% | |
| ! | ATCAACTCCCATAAAGCACT+TGG | + | chr6_1:81804690-81804709 | None:intergenic | 40.0% |
| AAGTGCTTTATGGGAGTTGA+TGG | - | chr6_1:81804689-81804708 | Msa0895080:intron | 40.0% | |
| AGTGGAATAGCGATCAAATG+TGG | - | chr6_1:81804738-81804757 | Msa0895080:intron | 40.0% | |
| CCGGTAAGTGAATGATTATC+AGG | - | chr6_1:81804776-81804795 | Msa0895080:intron | 40.0% | |
| TGAATGCATCAACTTGTGGT+AGG | - | chr6_1:81804903-81804922 | Msa0895080:intron | 40.0% | |
| !! | ACGGTTCTGTTTGGTTCTAA+AGG | + | chr6_1:81805077-81805096 | None:intergenic | 40.0% |
| GAACCGTAGTTAACAATGGT+TGG | - | chr6_1:81805090-81805109 | Msa0895080:intron | 40.0% | |
| CATTGAACCAGAAGTCGAAA+TGG | + | chr6_1:81805227-81805246 | None:intergenic | 40.0% | |
| !! | TTCGACTTCTGGTTCAATGT+TGG | - | chr6_1:81805228-81805247 | Msa0895080:CDS | 40.0% |
| !! | CTTCTGGTTCAATGTTGGTT+TGG | - | chr6_1:81805233-81805252 | Msa0895080:CDS | 40.0% |
| TTTCCCAAGAAGACGAGAAA+AGG | - | chr6_1:81805514-81805533 | Msa0895080:CDS | 40.0% | |
| TTCCCAAGAAGACGAGAAAA+GGG | - | chr6_1:81805515-81805534 | Msa0895080:CDS | 40.0% | |
| TCATAATCTACGGAACCGAT+TGG | - | chr6_1:81804132-81804151 | Msa0895080:CDS | 40.0% | |
| CACTATCACTCGAAACCAAT+CGG | + | chr6_1:81804150-81804169 | None:intergenic | 40.0% | |
| GGAAGGGACTAATAATGACT+TGG | - | chr6_1:81804231-81804250 | Msa0895080:intron | 40.0% | |
| ! | TGACTTGGCATCTCAAACAA+AGG | - | chr6_1:81804246-81804265 | Msa0895080:intron | 40.0% |
| ! | ACATCGACAACAGTTTTCGA+CGG | + | chr6_1:81804283-81804302 | None:intergenic | 40.0% |
| !!! | AGGGCATGTTTTGATCTCTT+CGG | - | chr6_1:81804318-81804337 | Msa0895080:intron | 40.0% |
| !!! | CATGTTTTGATCTCTTCGGA+AGG | - | chr6_1:81804322-81804341 | Msa0895080:intron | 40.0% |
| TTTGATCTCTTCGGAAGGAA+AGG | - | chr6_1:81804327-81804346 | Msa0895080:intron | 40.0% | |
| ! | TATGTCGTGGACTGCAATTT+CGG | - | chr6_1:81804444-81804463 | Msa0895080:intron | 40.0% |
| ! | AATTTCGGCTGCATTAGCTT+TGG | - | chr6_1:81804459-81804478 | Msa0895080:intron | 40.0% |
| ! | GTAGACGGATTCAACAAAAC+TGG | - | chr6_1:81804660-81804679 | Msa0895080:intron | 40.0% |
| CTGGAATTCCAAGTGCTTTA+TGG | - | chr6_1:81804679-81804698 | Msa0895080:intron | 40.0% | |
| ! | ATCAACTCCCATAAAGCACT+TGG | + | chr6_1:81804690-81804709 | None:intergenic | 40.0% |
| AAGTGCTTTATGGGAGTTGA+TGG | - | chr6_1:81804689-81804708 | Msa0895080:intron | 40.0% | |
| AGTGGAATAGCGATCAAATG+TGG | - | chr6_1:81804738-81804757 | Msa0895080:intron | 40.0% | |
| CCGGTAAGTGAATGATTATC+AGG | - | chr6_1:81804776-81804795 | Msa0895080:intron | 40.0% | |
| TGAATGCATCAACTTGTGGT+AGG | - | chr6_1:81804903-81804922 | Msa0895080:intron | 40.0% | |
| !! | ACGGTTCTGTTTGGTTCTAA+AGG | + | chr6_1:81805077-81805096 | None:intergenic | 40.0% |
| GAACCGTAGTTAACAATGGT+TGG | - | chr6_1:81805090-81805109 | Msa0895080:intron | 40.0% | |
| CATTGAACCAGAAGTCGAAA+TGG | + | chr6_1:81805227-81805246 | None:intergenic | 40.0% | |
| !! | TTCGACTTCTGGTTCAATGT+TGG | - | chr6_1:81805228-81805247 | Msa0895080:CDS | 40.0% |
| !! | CTTCTGGTTCAATGTTGGTT+TGG | - | chr6_1:81805233-81805252 | Msa0895080:CDS | 40.0% |
| TTTCCCAAGAAGACGAGAAA+AGG | - | chr6_1:81805514-81805533 | Msa0895080:CDS | 40.0% | |
| TTCCCAAGAAGACGAGAAAA+GGG | - | chr6_1:81805515-81805534 | Msa0895080:CDS | 40.0% | |
| AGATATCGAGGATCCGATTG+CGG | - | chr6_1:81803973-81803992 | Msa0895080:CDS | 45.0% | |
| CTTGGCATCTCAAACAAAGG+AGG | - | chr6_1:81804249-81804268 | Msa0895080:intron | 45.0% | |
| !! | AGGACTATTTAAGCGCTGAG+TGG | - | chr6_1:81804347-81804366 | Msa0895080:intron | 45.0% |
| TGCTAGGCCAAGTTTAGAGA+AGG | - | chr6_1:81804501-81804520 | Msa0895080:intron | 45.0% | |
| GAACGATCAACTCGCGAATA+AGG | + | chr6_1:81804717-81804736 | None:intergenic | 45.0% | |
| GTGGCATCAAATGTACCAAC+CGG | - | chr6_1:81804757-81804776 | Msa0895080:intron | 45.0% | |
| TTGTAAGGGTAGGAGAGACA+AGG | + | chr6_1:81804838-81804857 | None:intergenic | 45.0% | |
| TGTTGTGAAATAGGCCAGTC+TGG | - | chr6_1:81805021-81805040 | Msa0895080:CDS | 45.0% | |
| CCATGATTCAGAAGTCTCAC+CGG | - | chr6_1:81805188-81805207 | Msa0895080:CDS | 45.0% | |
| AAATGGACCAGAGGTCAAAC+CGG | + | chr6_1:81805210-81805229 | None:intergenic | 45.0% | |
| ! | TGCCCTTTTCTCGTCTTCTT+GGG | + | chr6_1:81805520-81805539 | None:intergenic | 45.0% |
| ! | ATGCCCTTTTCTCGTCTTCT+TGG | + | chr6_1:81805521-81805540 | None:intergenic | 45.0% |
| AAGAAGACGAGAAAAGGGCA+TGG | - | chr6_1:81805520-81805539 | Msa0895080:CDS | 45.0% | |
| ! | GAAAAGGGCATGGCTCATAT+TGG | - | chr6_1:81805530-81805549 | Msa0895080:CDS | 45.0% |
| AGATATCGAGGATCCGATTG+CGG | - | chr6_1:81803973-81803992 | Msa0895080:CDS | 45.0% | |
| CTTGGCATCTCAAACAAAGG+AGG | - | chr6_1:81804249-81804268 | Msa0895080:intron | 45.0% | |
| !! | AGGACTATTTAAGCGCTGAG+TGG | - | chr6_1:81804347-81804366 | Msa0895080:intron | 45.0% |
| TGCTAGGCCAAGTTTAGAGA+AGG | - | chr6_1:81804501-81804520 | Msa0895080:intron | 45.0% | |
| GAACGATCAACTCGCGAATA+AGG | + | chr6_1:81804717-81804736 | None:intergenic | 45.0% | |
| GTGGCATCAAATGTACCAAC+CGG | - | chr6_1:81804757-81804776 | Msa0895080:intron | 45.0% | |
| TTGTAAGGGTAGGAGAGACA+AGG | + | chr6_1:81804838-81804857 | None:intergenic | 45.0% | |
| TGTTGTGAAATAGGCCAGTC+TGG | - | chr6_1:81805021-81805040 | Msa0895080:CDS | 45.0% | |
| CCATGATTCAGAAGTCTCAC+CGG | - | chr6_1:81805188-81805207 | Msa0895080:CDS | 45.0% | |
| AAATGGACCAGAGGTCAAAC+CGG | + | chr6_1:81805210-81805229 | None:intergenic | 45.0% | |
| ! | TGCCCTTTTCTCGTCTTCTT+GGG | + | chr6_1:81805520-81805539 | None:intergenic | 45.0% |
| ! | ATGCCCTTTTCTCGTCTTCT+TGG | + | chr6_1:81805521-81805540 | None:intergenic | 45.0% |
| AAGAAGACGAGAAAAGGGCA+TGG | - | chr6_1:81805520-81805539 | Msa0895080:CDS | 45.0% | |
| ! | GAAAAGGGCATGGCTCATAT+TGG | - | chr6_1:81805530-81805549 | Msa0895080:CDS | 45.0% |
| !!! | TTTAATATTTATTTGTTATT+TGG | - | chr6_1:81805129-81805148 | Msa0895080:intron | 5.0% |
| !!! | TTTAATATTTATTTGTTATT+TGG | - | chr6_1:81805129-81805148 | Msa0895080:intron | 5.0% |
| !! | TCGCGAGTTGATCGTTCTAG+TGG | - | chr6_1:81804720-81804739 | Msa0895080:intron | 50.0% |
| TGTGAAATAGGCCAGTCTGG+CGG | - | chr6_1:81805024-81805043 | Msa0895080:CDS | 50.0% | |
| AAAGGACTGTGAACCGACCT+TGG | + | chr6_1:81805059-81805078 | None:intergenic | 50.0% | |
| CCGGTGAGACTTCTGAATCA+TGG | + | chr6_1:81805191-81805210 | None:intergenic | 50.0% | |
| CAGAAGTCGAAATGGACCAG+AGG | + | chr6_1:81805219-81805238 | None:intergenic | 50.0% | |
| CTCTGGTCCATTTCGACTTC+TGG | - | chr6_1:81805217-81805236 | Msa0895080:CDS | 50.0% | |
| TTGGGAAATTGCAGCTGCTG+AGG | + | chr6_1:81805502-81805521 | None:intergenic | 50.0% | |
| !! | GGCATGGCTCATATTGGCTT+GGG | - | chr6_1:81805536-81805555 | Msa0895080:CDS | 50.0% |
| CTTGGGTCAGCACTATAGCA+GGG | - | chr6_1:81805553-81805572 | Msa0895080:CDS | 50.0% | |
| AGCAGGGAACCTGTCACTAT+TGG | - | chr6_1:81805569-81805588 | Msa0895080:CDS | 50.0% | |
| GCAGGGAACCTGTCACTATT+GGG | - | chr6_1:81805570-81805589 | Msa0895080:CDS | 50.0% | |
| CAGCTGATCCCAATAGTGAC+AGG | + | chr6_1:81805581-81805600 | None:intergenic | 50.0% | |
| !! | TCGCGAGTTGATCGTTCTAG+TGG | - | chr6_1:81804720-81804739 | Msa0895080:intron | 50.0% |
| TGTGAAATAGGCCAGTCTGG+CGG | - | chr6_1:81805024-81805043 | Msa0895080:CDS | 50.0% | |
| AAAGGACTGTGAACCGACCT+TGG | + | chr6_1:81805059-81805078 | None:intergenic | 50.0% | |
| CCGGTGAGACTTCTGAATCA+TGG | + | chr6_1:81805191-81805210 | None:intergenic | 50.0% | |
| CAGAAGTCGAAATGGACCAG+AGG | + | chr6_1:81805219-81805238 | None:intergenic | 50.0% | |
| CTCTGGTCCATTTCGACTTC+TGG | - | chr6_1:81805217-81805236 | Msa0895080:CDS | 50.0% | |
| TTGGGAAATTGCAGCTGCTG+AGG | + | chr6_1:81805502-81805521 | None:intergenic | 50.0% | |
| !! | GGCATGGCTCATATTGGCTT+GGG | - | chr6_1:81805536-81805555 | Msa0895080:CDS | 50.0% |
| CTTGGGTCAGCACTATAGCA+GGG | - | chr6_1:81805553-81805572 | Msa0895080:CDS | 50.0% | |
| AGCAGGGAACCTGTCACTAT+TGG | - | chr6_1:81805569-81805588 | Msa0895080:CDS | 50.0% | |
| GCAGGGAACCTGTCACTATT+GGG | - | chr6_1:81805570-81805589 | Msa0895080:CDS | 50.0% | |
| CAGCTGATCCCAATAGTGAC+AGG | + | chr6_1:81805581-81805600 | None:intergenic | 50.0% | |
| TCGGCTGCAACTTCCGCAAT+CGG | + | chr6_1:81803989-81804008 | None:intergenic | 55.0% | |
| !! | TAAGCGCTGAGTGGAAGCGT+AGG | - | chr6_1:81804356-81804375 | Msa0895080:intron | 55.0% |
| ! | CTGAGTGGAAGCGTAGGTTG+TGG | - | chr6_1:81804362-81804381 | Msa0895080:intron | 55.0% |
| !! | AGTCTCACCGGTTTGACCTC+TGG | - | chr6_1:81805200-81805219 | Msa0895080:CDS | 55.0% |
| ! | GGGCATGGCTCATATTGGCT+TGG | - | chr6_1:81805535-81805554 | Msa0895080:CDS | 55.0% |
| GCTTGGGTCAGCACTATAGC+AGG | - | chr6_1:81805552-81805571 | Msa0895080:CDS | 55.0% | |
| TCGGCTGCAACTTCCGCAAT+CGG | + | chr6_1:81803989-81804008 | None:intergenic | 55.0% | |
| !! | TAAGCGCTGAGTGGAAGCGT+AGG | - | chr6_1:81804356-81804375 | Msa0895080:intron | 55.0% |
| ! | CTGAGTGGAAGCGTAGGTTG+TGG | - | chr6_1:81804362-81804381 | Msa0895080:intron | 55.0% |
| !! | AGTCTCACCGGTTTGACCTC+TGG | - | chr6_1:81805200-81805219 | Msa0895080:CDS | 55.0% |
| ! | GGGCATGGCTCATATTGGCT+TGG | - | chr6_1:81805535-81805554 | Msa0895080:CDS | 55.0% |
| GCTTGGGTCAGCACTATAGC+AGG | - | chr6_1:81805552-81805571 | Msa0895080:CDS | 55.0% | |
| AAATAGGCCAGTCTGGCGGC+TGG | - | chr6_1:81805028-81805047 | Msa0895080:CDS | 60.0% | |
| ! | TCTGGCGGCTGGTTGAACCA+AGG | - | chr6_1:81805039-81805058 | Msa0895080:CDS | 60.0% |
| ! | GCGGCTGGTTGAACCAAGGT+CGG | - | chr6_1:81805043-81805062 | Msa0895080:CDS | 60.0% |
| AAATAGGCCAGTCTGGCGGC+TGG | - | chr6_1:81805028-81805047 | Msa0895080:CDS | 60.0% | |
| ! | TCTGGCGGCTGGTTGAACCA+AGG | - | chr6_1:81805039-81805058 | Msa0895080:CDS | 60.0% |
| ! | GCGGCTGGTTGAACCAAGGT+CGG | - | chr6_1:81805043-81805062 | Msa0895080:CDS | 60.0% |
| GGTTCAACCAGCCGCCAGAC+TGG | + | chr6_1:81805038-81805057 | None:intergenic | 65.0% | |
| GGTTCAACCAGCCGCCAGAC+TGG | + | chr6_1:81805038-81805057 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 81803950 | 81805734 | 81803950 | ID=Msa0895080;Name=Msa0895080 |
| chr6_1 | mRNA | 81803950 | 81805734 | 81803950 | ID=Msa0895080-mRNA-1;Parent=Msa0895080;Name=Msa0895080-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0|1|1|1|3|0|329 |
| chr6_1 | exon | 81805162 | 81805734 | 81805162 | ID=Msa0895080-mRNA-1:exon:13897;Parent=Msa0895080-mRNA-1 |
| chr6_1 | exon | 81804916 | 81805069 | 81804916 | ID=Msa0895080-mRNA-1:exon:13896;Parent=Msa0895080-mRNA-1 |
| chr6_1 | exon | 81803950 | 81804212 | 81803950 | ID=Msa0895080-mRNA-1:exon:13895;Parent=Msa0895080-mRNA-1 |
| chr6_1 | CDS | 81805162 | 81805734 | 81805162 | ID=Msa0895080-mRNA-1:cds;Parent=Msa0895080-mRNA-1 |
| chr6_1 | CDS | 81804916 | 81805069 | 81804916 | ID=Msa0895080-mRNA-1:cds;Parent=Msa0895080-mRNA-1 |
| chr6_1 | CDS | 81803950 | 81804212 | 81803950 | ID=Msa0895080-mRNA-1:cds;Parent=Msa0895080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
