Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895260 | XP_039685042.1 | 93.714 | 175 | 7 | 1 | 48 | 218 | 171 | 345 | 1.53e-112 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895260 | G7IAR4 | 92.248 | 129 | 10 | 0 | 71 | 199 | 222 | 350 | 2.45e-78 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0895260 | Msa0994500 | 0.954249 | 4.523817e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895260 | MtrunA17_Chr1g0203821 | 92.248 | 129 | 10 | 0 | 71 | 199 | 222 | 350 | 4.72e-82 | 249 |
| Msa0895260 | MtrunA17_Chr8g0365301 | 96.078 | 51 | 2 | 0 | 165 | 215 | 1 | 51 | 1.10e-27 | 99.8 |
| Msa0895260 | MtrunA17_Chr4g0047511 | 94.118 | 51 | 3 | 0 | 165 | 215 | 1 | 51 | 4.01e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895260 | AT5G52030.1 | 54.023 | 174 | 72 | 4 | 35 | 201 | 57 | 229 | 1.79e-53 | 172 |
| Msa0895260 | AT5G52030.2 | 54.023 | 174 | 72 | 4 | 35 | 201 | 201 | 373 | 1.79e-51 | 171 |
Find 50 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGATGTCATTAATTTAA+TGG | 0.159794 | 6_1:-82493838 | Msa0895260:CDS |
| TTTAGTCCTGCCAATAAAAT+TGG | 0.191313 | 6_1:-82496193 | Msa0895260:CDS |
| AGGCTGTGAATAACTGTAAA+AGG | 0.213580 | 6_1:-82493986 | Msa0895260:CDS |
| TTTCTGGCAGTGAAAGAAAA+TGG | 0.264695 | 6_1:-82493613 | Msa0895260:three_prime_UTR |
| TTTCTTTCACTGCCAGAAAT+TGG | 0.294832 | 6_1:+82493617 | None:intergenic |
| GAGTGGAGTAGACCAATTTC+TGG | 0.326465 | 6_1:-82493629 | Msa0895260:three_prime_UTR |
| CAAATAGCTGAGAAGTTAGA+AGG | 0.389483 | 6_1:-82493587 | Msa0895260:three_prime_UTR |
| GAGCATGGAAGGCTTTGAAT+TGG | 0.390401 | 6_1:-82494909 | Msa0895260:CDS |
| TTGAGATTTCGAGACCTTGC+TGG | 0.392448 | 6_1:-82493894 | Msa0895260:CDS |
| TATGCACTATTAGCCGATAC+AGG | 0.408888 | 6_1:-82493921 | Msa0895260:CDS |
| TTAATGGTTCTTTATAGCTT+AGG | 0.424486 | 6_1:-82493822 | Msa0895260:CDS |
| GTATCAGAACTCTTGCTTCA+AGG | 0.434040 | 6_1:-82493763 | Msa0895260:three_prime_UTR |
| AAAAGGGTGGTAGGTGTGAT+TGG | 0.444853 | 6_1:-82493969 | Msa0895260:CDS |
| ATACCACTAATTGACAAAAC+AGG | 0.448524 | 6_1:-82493785 | Msa0895260:exon |
| AGCTGAGAAGTTAGAAGGAA+GGG | 0.452156 | 6_1:-82493582 | Msa0895260:three_prime_UTR |
| ATGTATAAGAGGTGGCAATA+AGG | 0.459297 | 6_1:+82494154 | None:intergenic |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | 6_1:-82496248 | Msa0895260:intron |
| ATATATCTAAACTTAATATC+AGG | 0.468076 | 6_1:+82493518 | None:intergenic |
| TTCTGGCAGTGAAAGAAAAT+GGG | 0.483622 | 6_1:-82493612 | Msa0895260:three_prime_UTR |
| GTGGTAGGTGTGATTGGAAA+AGG | 0.496641 | 6_1:-82493963 | Msa0895260:CDS |
| ATGGTCTCTGAAGCGGAGAA+AGG | 0.510965 | 6_1:-82494006 | Msa0895260:CDS |
| CTGTTCTGCAGTATCTTGCA+TGG | 0.516086 | 6_1:-82494025 | Msa0895260:intron |
| CATTATCAGCCACTGTATCA+TGG | 0.521613 | 6_1:-82493655 | Msa0895260:three_prime_UTR |
| AAATCTCAAATTCCCTGTAT+CGG | 0.524931 | 6_1:+82493908 | None:intergenic |
| AGTCCTGCCAATAAAATTGG+AGG | 0.527309 | 6_1:-82496190 | Msa0895260:CDS |
| GTATCTCGTTCATGTATAAG+AGG | 0.530170 | 6_1:+82494143 | None:intergenic |
| TGAGATTTCGAGACCTTGCT+GGG | 0.531713 | 6_1:-82493893 | Msa0895260:CDS |
| TAGCTGAGAAGTTAGAAGGA+AGG | 0.540309 | 6_1:-82493583 | Msa0895260:three_prime_UTR |
| GGCTGTGAATAACTGTAAAA+GGG | 0.547115 | 6_1:-82493985 | Msa0895260:CDS |
| GTAGCTTCAGAGAGCATGGA+AGG | 0.554057 | 6_1:-82494920 | Msa0895260:intron |
| GTCCTGCCAATAAAATTGGA+GGG | 0.554106 | 6_1:-82496189 | Msa0895260:CDS |
| ATAAGAGGTGGCAATAAGGA+TGG | 0.555215 | 6_1:+82494158 | None:intergenic |
| CCACTGTATCATGGTGAGAG+TGG | 0.556085 | 6_1:-82493646 | Msa0895260:three_prime_UTR |
| GAGAAGTTAGAAGGAAGGGT+TGG | 0.557009 | 6_1:-82493578 | Msa0895260:three_prime_UTR |
| ATTGGAAAAGGCCACATGAA+TGG | 0.567386 | 6_1:-82493951 | Msa0895260:CDS |
| GATTTCTACAAATAAGCTTG+AGG | 0.582194 | 6_1:-82494830 | Msa0895260:intron |
| ATCTTGCATGGTCTCTGAAG+CGG | 0.593986 | 6_1:-82494013 | Msa0895260:CDS |
| TCCTGCCAATAAAATTGGAG+GGG | 0.601474 | 6_1:-82496188 | Msa0895260:CDS |
| AATAACTGTAAAAGGGTGGT+AGG | 0.617141 | 6_1:-82493978 | Msa0895260:CDS |
| CCTGCCAATAAAATTGGAGG+GGG | 0.623892 | 6_1:-82496187 | Msa0895260:CDS |
| ATGCACTATTAGCCGATACA+GGG | 0.626021 | 6_1:-82493920 | Msa0895260:CDS |
| CTGATGAAGATGTTATTCCA+CGG | 0.640766 | 6_1:+82494854 | None:intergenic |
| TTATTGACGATAGTTATCCG+TGG | 0.648146 | 6_1:-82494871 | Msa0895260:CDS |
| TCTCGTTCATGTATAAGAGG+TGG | 0.648526 | 6_1:+82494146 | None:intergenic |
| GCAAGCAGTGTAGAGTGCGA+TGG | 0.650454 | 6_1:-82493556 | Msa0895260:three_prime_UTR |
| TTAGATGCAGCATGTAACTG+AGG | 0.670877 | 6_1:+82495136 | None:intergenic |
| CCACTCTCACCATGATACAG+TGG | 0.674658 | 6_1:+82493646 | None:intergenic |
| CATATATTACACCATTCATG+TGG | 0.675235 | 6_1:+82493940 | None:intergenic |
| TGTGAATAACTGTAAAAGGG+TGG | 0.676596 | 6_1:-82493982 | Msa0895260:CDS |
| TAAGAGATTCAACATTCACA+TGG | 0.722671 | 6_1:-82495116 | Msa0895260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTATGTTTATATGTTTTT+GGG | - | chr6_1:82493764-82493783 | Msa0895260:three_prime_UTR | 15.0% |
| !!! | AATTTTTCTTTTTGAAAACA+AGG | - | chr6_1:82494016-82494035 | Msa0895260:CDS | 15.0% |
| !!! | ATTTTAAATTCTGTATGATA+AGG | - | chr6_1:82494209-82494228 | Msa0895260:CDS | 15.0% |
| !! | TTTGAATTGTTAAAATTTGA+TGG | - | chr6_1:82494563-82494582 | Msa0895260:intron | 15.0% |
| !!! | CAAGTTTTTGAAAATTAATA+AGG | - | chr6_1:82495970-82495989 | Msa0895260:intron | 15.0% |
| !! | TAAGATCATATATAATACTT+CGG | + | chr6_1:82496288-82496307 | None:intergenic | 15.0% |
| !!! | TTTACTATTTTTTATGTTAC+AGG | - | chr6_1:82496482-82496501 | Msa0895260:intron | 15.0% |
| !!! | ACTAAATATCATTTTAAAAG+GGG | + | chr6_1:82496529-82496548 | None:intergenic | 15.0% |
| !!! | GACTAAATATCATTTTAAAA+GGG | + | chr6_1:82496530-82496549 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCTTTAAAATTGT+TGG | - | chr6_1:82497551-82497570 | Msa0895260:intron | 15.0% |
| !! | ATATATCTAAACTTAATATC+AGG | + | chr6_1:82497741-82497760 | None:intergenic | 15.0% |
| !!! | GTTCTATGTTTATATGTTTT+TGG | - | chr6_1:82493763-82493782 | Msa0895260:three_prime_UTR | 20.0% |
| !! | ATAGTGTTTGATACAAAATT+TGG | - | chr6_1:82493859-82493878 | Msa0895260:CDS | 20.0% |
| !! | TAGTGTTTGATACAAAATTT+GGG | - | chr6_1:82493860-82493879 | Msa0895260:CDS | 20.0% |
| !! | ATTTGAATAAGAATGACATT+TGG | - | chr6_1:82494115-82494134 | Msa0895260:intron | 20.0% |
| !! | TGAGAATAAAGTTATAATGA+TGG | - | chr6_1:82494423-82494442 | Msa0895260:intron | 20.0% |
| !! | TACAAATGAATAAACTTGTA+TGG | + | chr6_1:82494499-82494518 | None:intergenic | 20.0% |
| !! | AAAGTAATGTTGTTAAATCA+TGG | + | chr6_1:82494873-82494892 | None:intergenic | 20.0% |
| !!! | AATGAATTTTTCCAAATTCA+TGG | - | chr6_1:82495419-82495438 | Msa0895260:intron | 20.0% |
| !! | TGCATTTATGAATATACTTT+GGG | - | chr6_1:82495737-82495756 | Msa0895260:intron | 20.0% |
| !!! | TTAGTGAAATTTTGAAACAA+TGG | - | chr6_1:82496224-82496243 | Msa0895260:CDS | 20.0% |
| !!! | TAGTGAAATTTTGAAACAAT+GGG | - | chr6_1:82496225-82496244 | Msa0895260:CDS | 20.0% |
| !!! | GAAGTATTATATATGATCTT+AGG | - | chr6_1:82496287-82496306 | Msa0895260:intron | 20.0% |
| !!! | GGACTAAATATCATTTTAAA+AGG | + | chr6_1:82496531-82496550 | None:intergenic | 20.0% |
| !!! | ATTAATAAAGTACTCAGAAT+AGG | + | chr6_1:82496741-82496760 | None:intergenic | 20.0% |
| !! | ATTCTGAGTACTTTATTAAT+TGG | - | chr6_1:82496741-82496760 | Msa0895260:intron | 20.0% |
| !! | TTCTGAGTACTTTATTAATT+GGG | - | chr6_1:82496742-82496761 | Msa0895260:intron | 20.0% |
| !! | ATATATAAAACTCTCAACTA+AGG | - | chr6_1:82496916-82496935 | Msa0895260:intron | 20.0% |
| !! | GATTGATGTCATTAATTTAA+TGG | - | chr6_1:82497418-82497437 | Msa0895260:intron | 20.0% |
| !! | TTTGTTCAGGTTTATTTAGA+AGG | - | chr6_1:82493474-82493493 | Msa0895260:three_prime_UTR | 25.0% |
| !!! | TGGTTTTGATTTTCTTTTTC+AGG | - | chr6_1:82493604-82493623 | Msa0895260:three_prime_UTR | 25.0% |
| !! | AAGTAAGTGTTTGAGATAAT+TGG | - | chr6_1:82493886-82493905 | Msa0895260:CDS | 25.0% |
| !! | GAGATTTTTGCTAAATTCTT+TGG | - | chr6_1:82494038-82494057 | Msa0895260:intron | 25.0% |
| !!! | TGCTAAATTCTTTGGAATAT+TGG | - | chr6_1:82494046-82494065 | Msa0895260:intron | 25.0% |
| !! | AATATTGGACTGATTTCATT+AGG | - | chr6_1:82494061-82494080 | Msa0895260:intron | 25.0% |
| !! | AAAAGTTTTCATACACTGAT+TGG | - | chr6_1:82494145-82494164 | Msa0895260:CDS | 25.0% |
| ! | GATTCTAAATGTTGTATCTA+AGG | - | chr6_1:82494231-82494250 | Msa0895260:intron | 25.0% |
| !! | TAGACTTTTGATGAAGAATT+TGG | - | chr6_1:82494269-82494288 | Msa0895260:intron | 25.0% |
| !!! | AATTTTAAGTTCTTGTGGTT+TGG | - | chr6_1:82494372-82494391 | Msa0895260:intron | 25.0% |
| ! | TAGAATTGTGATGTAGAATT+TGG | - | chr6_1:82494639-82494658 | Msa0895260:intron | 25.0% |
| ! | AAGCTTCATTTAGAGAATTA+AGG | - | chr6_1:82494690-82494709 | Msa0895260:intron | 25.0% |
| ! | AGCTTCATTTAGAGAATTAA+GGG | - | chr6_1:82494691-82494710 | Msa0895260:intron | 25.0% |
| !!! | GCTGATATATGAGATTTTTT+GGG | + | chr6_1:82494782-82494801 | None:intergenic | 25.0% |
| !!! | AGCTGATATATGAGATTTTT+TGG | + | chr6_1:82494783-82494802 | None:intergenic | 25.0% |
| ! | CCACATAAATAAAAGGATTT+AGG | + | chr6_1:82494918-82494937 | None:intergenic | 25.0% |
| !!! | CCTAAATCCTTTTATTTATG+TGG | - | chr6_1:82494915-82494934 | Msa0895260:CDS | 25.0% |
| !!! | ATCCTTTTATTTATGTGGAA+AGG | - | chr6_1:82494920-82494939 | Msa0895260:intron | 25.0% |
| ! | TCATACTAAACGATAAGAAA+AGG | + | chr6_1:82495154-82495173 | None:intergenic | 25.0% |
| !! | GAAAATTTGGTTAAGTTGTA+TGG | - | chr6_1:82495316-82495335 | Msa0895260:intron | 25.0% |
| ! | GTGCATTTATGAATATACTT+TGG | - | chr6_1:82495736-82495755 | Msa0895260:intron | 25.0% |
| !! | GAAGTATTATGTATGTTCTT+TGG | - | chr6_1:82496256-82496275 | Msa0895260:intron | 25.0% |
| ! | TATATATGATCTTAGGATGA+TGG | - | chr6_1:82496294-82496313 | Msa0895260:intron | 25.0% |
| ! | AAAATTGAGATTGACATTCT+AGG | + | chr6_1:82496464-82496483 | None:intergenic | 25.0% |
| ! | AAGATTTCACTATAACTGAA+TGG | + | chr6_1:82496824-82496843 | None:intergenic | 25.0% |
| !! | TATAGTGAAATCTTTTACGA+TGG | - | chr6_1:82496830-82496849 | Msa0895260:intron | 25.0% |
| ! | TTAATGGTTCTTTATAGCTT+AGG | - | chr6_1:82497434-82497453 | Msa0895260:intron | 25.0% |
| ! | TGGTTTTCATCTTTTTGTTC+AGG | - | chr6_1:82493461-82493480 | Msa0895260:three_prime_UTR | 30.0% |
| CAAACCTAGAACAAAAACAA+AGG | + | chr6_1:82493586-82493605 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTTGTTCTAGGTT+TGG | - | chr6_1:82493584-82493603 | Msa0895260:three_prime_UTR | 30.0% |
| !!! | TTTGTTGTTGTTTTGTGCTT+TGG | - | chr6_1:82493736-82493755 | Msa0895260:three_prime_UTR | 30.0% |
| !! | ATCACAAACACTGATTCAAA+TGG | + | chr6_1:82493970-82493989 | None:intergenic | 30.0% |
| ! | GAAGAATTTGGAACCAATAT+TGG | - | chr6_1:82494281-82494300 | Msa0895260:intron | 30.0% |
| ! | TAGTCTTGGTTTAACTTTGT+TGG | - | chr6_1:82494312-82494331 | Msa0895260:intron | 30.0% |
| ATTGTCATCTTGAAATTTGC+TGG | - | chr6_1:82494348-82494367 | Msa0895260:intron | 30.0% | |
| !!! | CTGGAAATTTTAAGTTCTTG+TGG | - | chr6_1:82494367-82494386 | Msa0895260:intron | 30.0% |
| ATAAAACCAAAGTAGTCCAA+TGG | + | chr6_1:82494531-82494550 | None:intergenic | 30.0% | |
| !! | AAAATTTGCTGGTATAGTGT+TGG | - | chr6_1:82494589-82494608 | Msa0895260:intron | 30.0% |
| TTGTGATGTAGAATTTGGAA+TGG | - | chr6_1:82494644-82494663 | Msa0895260:intron | 30.0% | |
| ! | TAGAATTTGGAATGGAATGA+TGG | - | chr6_1:82494652-82494671 | Msa0895260:intron | 30.0% |
| TCATTTAGAGAATTAAGGGT+TGG | - | chr6_1:82494695-82494714 | Msa0895260:intron | 30.0% | |
| CATTTAGAGAATTAAGGGTT+GGG | - | chr6_1:82494696-82494715 | Msa0895260:intron | 30.0% | |
| AAAATCTCATATATCAGCTC+TGG | - | chr6_1:82494784-82494803 | Msa0895260:intron | 30.0% | |
| CTCCTTTCCACATAAATAAA+AGG | + | chr6_1:82494925-82494944 | None:intergenic | 30.0% | |
| TTATTTATGTGGAAAGGAGA+TGG | - | chr6_1:82494926-82494945 | Msa0895260:intron | 30.0% | |
| TTTAGTCCTGCCAATAAAAT+TGG | - | chr6_1:82495063-82495082 | Msa0895260:intron | 30.0% | |
| ACCTTAATTGTATTACGATG+TGG | - | chr6_1:82495175-82495194 | Msa0895260:intron | 30.0% | |
| TCCACATCGTAATACAATTA+AGG | + | chr6_1:82495179-82495198 | None:intergenic | 30.0% | |
| TGAAGTAGAGCATGAAAATT+TGG | - | chr6_1:82495303-82495322 | Msa0895260:intron | 30.0% | |
| ! | CAATAAAGCATCCATGAATT+TGG | + | chr6_1:82495433-82495452 | None:intergenic | 30.0% |
| ACAGTAGTATCTACTTTGAT+TGG | - | chr6_1:82495512-82495531 | Msa0895260:intron | 30.0% | |
| GAAAATGCAGAGAAATTTCA+TGG | + | chr6_1:82495768-82495787 | None:intergenic | 30.0% | |
| AAAAACTTGTGATCTGACTT+TGG | + | chr6_1:82495959-82495978 | None:intergenic | 30.0% | |
| ! | CAAATGATAATGAACGTGTT+AGG | + | chr6_1:82496079-82496098 | None:intergenic | 30.0% |
| ACACGTTCATTATCATTTGT+AGG | - | chr6_1:82496080-82496099 | Msa0895260:intron | 30.0% | |
| TAAGAGATTCAACATTCACA+TGG | - | chr6_1:82496140-82496159 | Msa0895260:intron | 30.0% | |
| ATTCACATGGTAGTATTCTA+TGG | - | chr6_1:82496153-82496172 | Msa0895260:intron | 30.0% | |
| !!! | TATGGTCTCGATATTTTTTG+TGG | - | chr6_1:82496171-82496190 | Msa0895260:CDS | 30.0% |
| !!! | ATGGTCTCGATATTTTTTGT+GGG | - | chr6_1:82496172-82496191 | Msa0895260:CDS | 30.0% |
| !!! | ATATTTTTTGTGGGGGAATA+AGG | - | chr6_1:82496181-82496200 | Msa0895260:CDS | 30.0% |
| !!! | TATTTTTTGTGGGGGAATAA+GGG | - | chr6_1:82496182-82496201 | Msa0895260:CDS | 30.0% |
| GATTTCTACAAATAAGCTTG+AGG | - | chr6_1:82496426-82496445 | Msa0895260:intron | 30.0% | |
| AATGATATTTAGTCCTGTTC+CGG | - | chr6_1:82496536-82496555 | Msa0895260:intron | 30.0% | |
| ! | TTGTGTTTAGGTTAAATGAG+AGG | - | chr6_1:82496611-82496630 | Msa0895260:intron | 30.0% |
| AGCAGAAATCTTAGCTAAAT+GGG | + | chr6_1:82496664-82496683 | None:intergenic | 30.0% | |
| ACAACTTATTTCAATACCCT+TGG | + | chr6_1:82496788-82496807 | None:intergenic | 30.0% | |
| TTTCACTATAACTGAATGGT+TGG | + | chr6_1:82496820-82496839 | None:intergenic | 30.0% | |
| AAAACTAAAGAGCCAAATCT+TGG | - | chr6_1:82497006-82497025 | Msa0895260:intron | 30.0% | |
| CATATATTACACCATTCATG+TGG | + | chr6_1:82497319-82497338 | None:intergenic | 30.0% | |
| AAATCTCAAATTCCCTGTAT+CGG | + | chr6_1:82497351-82497370 | None:intergenic | 30.0% | |
| CTGGGAAAAATTCAAATGAT+GGG | - | chr6_1:82497381-82497400 | Msa0895260:intron | 30.0% | |
| TGGGAAAAATTCAAATGATG+GGG | - | chr6_1:82497382-82497401 | Msa0895260:intron | 30.0% | |
| ATACCACTAATTGACAAAAC+AGG | - | chr6_1:82497471-82497490 | Msa0895260:intron | 30.0% | |
| ! | ATACCTGTTTTGTCAATTAG+TGG | + | chr6_1:82497477-82497496 | None:intergenic | 30.0% |
| ! | ATTTAGAAGGTAGCAGCTTT+TGG | - | chr6_1:82493487-82493506 | Msa0895260:three_prime_UTR | 35.0% |
| ACTCAAACCTTAAAACAGCA+AGG | + | chr6_1:82493520-82493539 | None:intergenic | 35.0% | |
| !!! | GTGTCCTTTGTTTTTGTTCT+AGG | - | chr6_1:82493579-82493598 | Msa0895260:three_prime_UTR | 35.0% |
| ! | GACTGATTTCATTAGGTGTA+GGG | - | chr6_1:82494068-82494087 | Msa0895260:intron | 35.0% |
| ! | GTATCTAAGGTGTGAAAATC+TGG | - | chr6_1:82494244-82494263 | Msa0895260:intron | 35.0% |
| ! | TTTGGAACCAATATTGGAAC+TGG | - | chr6_1:82494287-82494306 | Msa0895260:intron | 35.0% |
| GACTATACCAGTTCCAATAT+TGG | + | chr6_1:82494297-82494316 | None:intergenic | 35.0% | |
| TATTGGAACTGGTATAGTCT+TGG | - | chr6_1:82494298-82494317 | Msa0895260:intron | 35.0% | |
| ATTTGTAGTCTATGAGCCAT+TGG | - | chr6_1:82494512-82494531 | Msa0895260:intron | 35.0% | |
| ! | TTTGATGGCTGAAAATTTGC+TGG | - | chr6_1:82494578-82494597 | Msa0895260:intron | 35.0% |
| ! | CTTGGTTACAGTTCCAATTT+TGG | + | chr6_1:82494728-82494747 | None:intergenic | 35.0% |
| AAATTGGAACTGTAACCAAG+TGG | - | chr6_1:82494728-82494747 | Msa0895260:intron | 35.0% | |
| ATATCTATCCCTGTCTTTAC+AGG | - | chr6_1:82494993-82495012 | Msa0895260:intron | 35.0% | |
| TATTACGATGTGGATGACTA+GGG | - | chr6_1:82495185-82495204 | Msa0895260:intron | 35.0% | |
| TTTCAGCTGAATCAAGACAA+GGG | - | chr6_1:82495245-82495264 | Msa0895260:intron | 35.0% | |
| GTTGTGTTGAAAGAAATAGC+AGG | - | chr6_1:82495341-82495360 | Msa0895260:intron | 35.0% | |
| GTGAAAGGCTATTATTCTCA+AGG | + | chr6_1:82495384-82495403 | None:intergenic | 35.0% | |
| TACCTAGAAGAGTTTGTGAA+AGG | + | chr6_1:82495399-82495418 | None:intergenic | 35.0% | |
| ! | GATTTTTCCTCCTCTTTAGT+TGG | - | chr6_1:82495484-82495503 | Msa0895260:intron | 35.0% |
| TCTTTGTCAAGGAGAATGAT+AGG | + | chr6_1:82495607-82495626 | None:intergenic | 35.0% | |
| AGACCAAAATCCGAAATCTT+CGG | + | chr6_1:82495637-82495656 | None:intergenic | 35.0% | |
| ACAAAATCTGATTGAAGCGT+TGG | + | chr6_1:82495707-82495726 | None:intergenic | 35.0% | |
| CACTAGATTTGCATCTTTCT+TGG | - | chr6_1:82496010-82496029 | Msa0895260:intron | 35.0% | |
| CGTTCATTATCATTTGTAGG+CGG | - | chr6_1:82496083-82496102 | Msa0895260:intron | 35.0% | |
| !!! | TGGTCTCGATATTTTTTGTG+GGG | - | chr6_1:82496173-82496192 | Msa0895260:CDS | 35.0% |
| TTATTGACGATAGTTATCCG+TGG | - | chr6_1:82496385-82496404 | Msa0895260:intron | 35.0% | |
| CTGATGAAGATGTTATTCCA+CGG | + | chr6_1:82496405-82496424 | None:intergenic | 35.0% | |
| ATGATATTTAGTCCTGTTCC+GGG | - | chr6_1:82496537-82496556 | Msa0895260:intron | 35.0% | |
| !!! | AAGGTTGGTGTTTTGTGTTT+AGG | - | chr6_1:82496599-82496618 | Msa0895260:intron | 35.0% |
| TTAGGTTAAATGAGAGGCTT+AGG | - | chr6_1:82496617-82496636 | Msa0895260:intron | 35.0% | |
| GCAGAAATCTTAGCTAAATG+GGG | + | chr6_1:82496663-82496682 | None:intergenic | 35.0% | |
| GAGCAGAAATCTTAGCTAAA+TGG | + | chr6_1:82496665-82496684 | None:intergenic | 35.0% | |
| ATTAAACAGTTTGCAGACCA+AGG | - | chr6_1:82496768-82496787 | Msa0895260:intron | 35.0% | |
| TTAAACAGTTTGCAGACCAA+GGG | - | chr6_1:82496769-82496788 | Msa0895260:intron | 35.0% | |
| ! | GAAATCTTTTACGATGGTTC+AGG | - | chr6_1:82496836-82496855 | Msa0895260:intron | 35.0% |
| CTGCAACTAATACCAAGATT+TGG | + | chr6_1:82497021-82497040 | None:intergenic | 35.0% | |
| ATGTATAAGAGGTGGCAATA+AGG | + | chr6_1:82497105-82497124 | None:intergenic | 35.0% | |
| GTATCTCGTTCATGTATAAG+AGG | + | chr6_1:82497116-82497135 | None:intergenic | 35.0% | |
| ! | CCATTGTTTACTTGAGTTGT+AGG | + | chr6_1:82497201-82497220 | None:intergenic | 35.0% |
| CCTACAACTCAAGTAAACAA+TGG | - | chr6_1:82497198-82497217 | Msa0895260:intron | 35.0% | |
| AGGCTGTGAATAACTGTAAA+AGG | - | chr6_1:82497270-82497289 | Msa0895260:intron | 35.0% | |
| GGCTGTGAATAACTGTAAAA+GGG | - | chr6_1:82497271-82497290 | Msa0895260:intron | 35.0% | |
| TGTGAATAACTGTAAAAGGG+TGG | - | chr6_1:82497274-82497293 | Msa0895260:intron | 35.0% | |
| AATAACTGTAAAAGGGTGGT+AGG | - | chr6_1:82497278-82497297 | Msa0895260:intron | 35.0% | |
| ! | CATTTGAATTTTTCCCAGCA+AGG | + | chr6_1:82497379-82497398 | None:intergenic | 35.0% |
| GCTGGGAAAAATTCAAATGA+TGG | - | chr6_1:82497380-82497399 | Msa0895260:intron | 35.0% | |
| GGGAAAAATTCAAATGATGG+GGG | - | chr6_1:82497383-82497402 | Msa0895260:intron | 35.0% | |
| TTTCTTTCACTGCCAGAAAT+TGG | + | chr6_1:82497642-82497661 | None:intergenic | 35.0% | |
| ! | TTTCTGGCAGTGAAAGAAAA+TGG | - | chr6_1:82497643-82497662 | Msa0895260:intron | 35.0% |
| TTCTGGCAGTGAAAGAAAAT+GGG | - | chr6_1:82497644-82497663 | Msa0895260:intron | 35.0% | |
| CAAATAGCTGAGAAGTTAGA+AGG | - | chr6_1:82497669-82497688 | Msa0895260:intron | 35.0% | |
| ACCTTAAAACAGCAAGGAAC+CGG | + | chr6_1:82493514-82493533 | None:intergenic | 40.0% | |
| ! | GGACTGATTTCATTAGGTGT+AGG | - | chr6_1:82494067-82494086 | Msa0895260:intron | 40.0% |
| TATGAGCCATTGGACTACTT+TGG | - | chr6_1:82494522-82494541 | Msa0895260:intron | 40.0% | |
| !! | TATAGTGTTGGTTCTGTCCA+GGG | - | chr6_1:82494601-82494620 | Msa0895260:intron | 40.0% |
| TATACCAAATTATCCCACCC+TGG | + | chr6_1:82494621-82494640 | None:intergenic | 40.0% | |
| GGTTGGGTTTGAACCAAAAT+TGG | - | chr6_1:82494712-82494731 | Msa0895260:intron | 40.0% | |
| TTCATTAATAGCCTGCCACT+TGG | + | chr6_1:82494746-82494765 | None:intergenic | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | - | chr6_1:82495008-82495027 | Msa0895260:intron | 40.0% | |
| AGTCCTGCCAATAAAATTGG+AGG | - | chr6_1:82495066-82495085 | Msa0895260:intron | 40.0% | |
| GTCCTGCCAATAAAATTGGA+GGG | - | chr6_1:82495067-82495086 | Msa0895260:intron | 40.0% | |
| TCCTGCCAATAAAATTGGAG+GGG | - | chr6_1:82495068-82495087 | Msa0895260:intron | 40.0% | |
| !!! | TGGTTTTGGTTCTGTCTACA+TGG | - | chr6_1:82495092-82495111 | Msa0895260:intron | 40.0% |
| GGAACGAAAAAACAACGATC+AGG | + | chr6_1:82495133-82495152 | None:intergenic | 40.0% | |
| GTATTACGATGTGGATGACT+AGG | - | chr6_1:82495184-82495203 | Msa0895260:intron | 40.0% | |
| CTTTCAGCTGAATCAAGACA+AGG | - | chr6_1:82495244-82495263 | Msa0895260:intron | 40.0% | |
| TTCAGCTGAATCAAGACAAG+GGG | - | chr6_1:82495246-82495265 | Msa0895260:intron | 40.0% | |
| AGCCTTTCACAAACTCTTCT+AGG | - | chr6_1:82495394-82495413 | Msa0895260:intron | 40.0% | |
| ! | TTTTCCTCCTCTTTAGTTGG+AGG | - | chr6_1:82495487-82495506 | Msa0895260:intron | 40.0% |
| ! | ATATGTGTTGACATTGCACG+CGG | - | chr6_1:82495550-82495569 | Msa0895260:intron | 40.0% |
| TTGTCAAGGAGAATGATAGG+AGG | + | chr6_1:82495604-82495623 | None:intergenic | 40.0% | |
| AGACCTTACACCGAAGATTT+CGG | - | chr6_1:82495624-82495643 | Msa0895260:intron | 40.0% | |
| ! | AATCCGAAATCTTCGGTGTA+AGG | + | chr6_1:82495630-82495649 | None:intergenic | 40.0% |
| ! | ACACCGAAGATTTCGGATTT+TGG | - | chr6_1:82495631-82495650 | Msa0895260:intron | 40.0% |
| GTGTAGTAGCCGAAAAATCT+TGG | - | chr6_1:82495840-82495859 | Msa0895260:intron | 40.0% | |
| ! | CGTTGCTAGCCAAGATTTTT+CGG | + | chr6_1:82495852-82495871 | None:intergenic | 40.0% |
| TTAGATGCAGCATGTAACTG+AGG | + | chr6_1:82496123-82496142 | None:intergenic | 40.0% | |
| !!! | GGTCTCGATATTTTTTGTGG+GGG | - | chr6_1:82496174-82496193 | Msa0895260:CDS | 40.0% |
| ! | TTTTGTAGCTTCAGAGAGCA+TGG | - | chr6_1:82496332-82496351 | Msa0895260:intron | 40.0% |
| GGGATCAAGCATATAAAAGC+AGG | + | chr6_1:82496509-82496528 | None:intergenic | 40.0% | |
| CAAAACACCAACCTTGAACA+TGG | + | chr6_1:82496594-82496613 | None:intergenic | 40.0% | |
| AGCTAAGATTTCTGCTCTGT+AGG | - | chr6_1:82496668-82496687 | Msa0895260:intron | 40.0% | |
| ACCAAAACCGTAGCTTAGTA+GGG | + | chr6_1:82496696-82496715 | None:intergenic | 40.0% | |
| AACCAAAACCGTAGCTTAGT+AGG | + | chr6_1:82496697-82496716 | None:intergenic | 40.0% | |
| !! | TACTAAGCTACGGTTTTGGT+TGG | - | chr6_1:82496696-82496715 | Msa0895260:intron | 40.0% |
| !!! | ACTAAGCTACGGTTTTGGTT+GGG | - | chr6_1:82496697-82496716 | Msa0895260:intron | 40.0% |
| ! | AAAGTACTCAGAATAGGCGT+AGG | + | chr6_1:82496735-82496754 | None:intergenic | 40.0% |
| GAAAAACTGAGCTGCTCATA+AGG | + | chr6_1:82497074-82497093 | None:intergenic | 40.0% | |
| ATAAGAGGTGGCAATAAGGA+TGG | + | chr6_1:82497101-82497120 | None:intergenic | 40.0% | |
| TCTCGTTCATGTATAAGAGG+TGG | + | chr6_1:82497113-82497132 | None:intergenic | 40.0% | |
| !!! | CGATGCAATTTTTGAGTGAG+AGG | + | chr6_1:82497153-82497172 | None:intergenic | 40.0% |
| TAGGACTTGTCACATGCAAA+AGG | + | chr6_1:82497182-82497201 | None:intergenic | 40.0% | |
| ATTGGAAAAGGCCACATGAA+TGG | - | chr6_1:82497305-82497324 | Msa0895260:intron | 40.0% | |
| TATGCACTATTAGCCGATAC+AGG | - | chr6_1:82497335-82497354 | Msa0895260:intron | 40.0% | |
| ATGCACTATTAGCCGATACA+GGG | - | chr6_1:82497336-82497355 | Msa0895260:intron | 40.0% | |
| ! | TCAAATGATGGGGGTTGTAA+TGG | - | chr6_1:82497392-82497411 | Msa0895260:intron | 40.0% |
| GTATCAGAACTCTTGCTTCA+AGG | - | chr6_1:82497493-82497512 | Msa0895260:intron | 40.0% | |
| CATTATCAGCCACTGTATCA+TGG | - | chr6_1:82497601-82497620 | Msa0895260:intron | 40.0% | |
| TAGCTGAGAAGTTAGAAGGA+AGG | - | chr6_1:82497673-82497692 | Msa0895260:intron | 40.0% | |
| AGCTGAGAAGTTAGAAGGAA+GGG | - | chr6_1:82497674-82497693 | Msa0895260:intron | 40.0% | |
| !!! | TCCGGTTCCTTGCTGTTTTA+AGG | - | chr6_1:82493510-82493529 | Msa0895260:three_prime_UTR | 45.0% |
| GGGTCTGTGTTTGACACAAT+TGG | - | chr6_1:82493784-82493803 | Msa0895260:exon | 45.0% | |
| AGGTGTAGGGCTCATAGATA+TGG | - | chr6_1:82494081-82494100 | Msa0895260:intron | 45.0% | |
| !! | GTATAGTGTTGGTTCTGTCC+AGG | - | chr6_1:82494600-82494619 | Msa0895260:intron | 45.0% |
| AGAACTTTGCAGCTGCAGTT+TGG | - | chr6_1:82494963-82494982 | Msa0895260:intron | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | + | chr6_1:82495004-82495023 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | + | chr6_1:82495005-82495024 | None:intergenic | 45.0% | |
| CCTGCCAATAAAATTGGAGG+GGG | - | chr6_1:82495069-82495088 | Msa0895260:intron | 45.0% | |
| ! | ACCACCCCCTCCAATTTTAT+TGG | + | chr6_1:82495076-82495095 | None:intergenic | 45.0% |
| ! | AAAATTGGAGGGGGTGGTTT+TGG | - | chr6_1:82495078-82495097 | Msa0895260:intron | 45.0% |
| GACTAGGGACGACTGAAAAA+TGG | - | chr6_1:82495200-82495219 | Msa0895260:intron | 45.0% | |
| AGGGGTGAAAGAGTTCTTGA+CGG | - | chr6_1:82495264-82495283 | Msa0895260:intron | 45.0% | |
| ACTGTGACCTCCAACTAAAG+AGG | + | chr6_1:82495497-82495516 | None:intergenic | 45.0% | |
| ! | TATGTGTTGACATTGCACGC+GGG | - | chr6_1:82495551-82495570 | Msa0895260:intron | 45.0% |
| CCTGACTTCTTCGTGCAAAA+AGG | + | chr6_1:82495581-82495600 | None:intergenic | 45.0% | |
| ! | CCTTTTTGCACGAAGAAGTC+AGG | - | chr6_1:82495578-82495597 | Msa0895260:intron | 45.0% |
| TCGGTGTAAGGTCTTTGTCA+AGG | + | chr6_1:82495618-82495637 | None:intergenic | 45.0% | |
| CAACGTCAGTCTTTCATGTC+TGG | - | chr6_1:82495867-82495886 | Msa0895260:intron | 45.0% | |
| !! | GAGCATGGAAGGCTTTGAAT+TGG | - | chr6_1:82496347-82496366 | Msa0895260:intron | 45.0% |
| ! | ACCCTACTAAGCTACGGTTT+TGG | - | chr6_1:82496692-82496711 | Msa0895260:intron | 45.0% |
| !!! | CTAAGCTACGGTTTTGGTTG+GGG | - | chr6_1:82496698-82496717 | Msa0895260:intron | 45.0% |
| CTGTTCTGCAGTATCTTGCA+TGG | - | chr6_1:82497231-82497250 | Msa0895260:intron | 45.0% | |
| ! | ATCTTGCATGGTCTCTGAAG+CGG | - | chr6_1:82497243-82497262 | Msa0895260:intron | 45.0% |
| AAAAGGGTGGTAGGTGTGAT+TGG | - | chr6_1:82497287-82497306 | Msa0895260:intron | 45.0% | |
| GTGGTAGGTGTGATTGGAAA+AGG | - | chr6_1:82497293-82497312 | Msa0895260:intron | 45.0% | |
| TTGAGATTTCGAGACCTTGC+TGG | - | chr6_1:82497362-82497381 | Msa0895260:intron | 45.0% | |
| TGAGATTTCGAGACCTTGCT+GGG | - | chr6_1:82497363-82497382 | Msa0895260:intron | 45.0% | |
| GAGTGGAGTAGACCAATTTC+TGG | - | chr6_1:82497627-82497646 | Msa0895260:intron | 45.0% | |
| GAGAAGTTAGAAGGAAGGGT+TGG | - | chr6_1:82497678-82497697 | Msa0895260:intron | 45.0% | |
| !! | ATTATATGAAATAAAAAAAT+TGG | + | chr6_1:82497767-82497786 | None:intergenic | 5.0% |
| ! | GAAGGTAGCAGCTTTTGGTC+CGG | - | chr6_1:82493492-82493511 | Msa0895260:three_prime_UTR | 50.0% |
| CTGTCCAGGGTGGGATAATT+TGG | - | chr6_1:82494614-82494633 | Msa0895260:intron | 50.0% | |
| TGGAACTGTAACCAAGTGGC+AGG | - | chr6_1:82494732-82494751 | Msa0895260:intron | 50.0% | |
| ! | CCCCCTCCAATTTTATTGGC+AGG | + | chr6_1:82495072-82495091 | None:intergenic | 50.0% |
| GCCAATAAAATTGGAGGGGG+TGG | - | chr6_1:82495072-82495091 | Msa0895260:intron | 50.0% | |
| GTGACCTCCAACTAAAGAGG+AGG | + | chr6_1:82495494-82495513 | None:intergenic | 50.0% | |
| ! | GTAGCTTCAGAGAGCATGGA+AGG | - | chr6_1:82496336-82496355 | Msa0895260:intron | 50.0% |
| GAGATCCTAGAAGCTCTACC+CGG | + | chr6_1:82496558-82496577 | None:intergenic | 50.0% | |
| ACCTTGAACATGGCACACTG+CGG | + | chr6_1:82496584-82496603 | None:intergenic | 50.0% | |
| CAGTGTGCCATGTTCAAGGT+TGG | - | chr6_1:82496584-82496603 | Msa0895260:intron | 50.0% | |
| GTAGGCACCCTACTAAGCTA+CGG | - | chr6_1:82496686-82496705 | Msa0895260:intron | 50.0% | |
| !!! | GGTTTTGGTTGGGGTATCCT+TGG | - | chr6_1:82496707-82496726 | Msa0895260:intron | 50.0% |
| CAGAATAGGCGTAGGTTCCA+AGG | + | chr6_1:82496727-82496746 | None:intergenic | 50.0% | |
| !! | ATGGTCTCTGAAGCGGAGAA+AGG | - | chr6_1:82497250-82497269 | Msa0895260:intron | 50.0% |
| ! | ATGATGGGGGTTGTAATGGC+TGG | - | chr6_1:82497396-82497415 | Msa0895260:intron | 50.0% |
| CCACTCTCACCATGATACAG+TGG | + | chr6_1:82497613-82497632 | None:intergenic | 50.0% | |
| CCACTGTATCATGGTGAGAG+TGG | - | chr6_1:82497610-82497629 | Msa0895260:intron | 50.0% | |
| !! | AGTGTTGGTTCTGTCCAGGG+TGG | - | chr6_1:82494604-82494623 | Msa0895260:intron | 55.0% |
| !! | GTGTTGGTTCTGTCCAGGGT+GGG | - | chr6_1:82494605-82494624 | Msa0895260:intron | 55.0% |
| CTAGAAGCTCTACCCGGAAC+AGG | + | chr6_1:82496552-82496571 | None:intergenic | 55.0% | |
| CTGTTCCGGGTAGAGCTTCT+AGG | - | chr6_1:82496550-82496569 | Msa0895260:intron | 55.0% | |
| CCTTGAACATGGCACACTGC+GGG | + | chr6_1:82496583-82496602 | None:intergenic | 55.0% | |
| GCAAGCAGTGTAGAGTGCGA+TGG | - | chr6_1:82497700-82497719 | Msa0895260:intron | 55.0% | |
| CCCGCAGTGTGCCATGTTCA+AGG | - | chr6_1:82496580-82496599 | Msa0895260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 82493457 | 82497821 | 82493457 | ID=Msa0895260;Name=Msa0895260 |
| chr6_1 | mRNA | 82493457 | 82497821 | 82493457 | ID=Msa0895260-mRNA-1;Parent=Msa0895260;Name=Msa0895260-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.16|0.14|0.71|1|1|7|337|218 |
| chr6_1 | exon | 82493457 | 82494036 | 82493457 | ID=Msa0895260-mRNA-1:exon:13972;Parent=Msa0895260-mRNA-1 |
| chr6_1 | exon | 82494142 | 82494237 | 82494142 | ID=Msa0895260-mRNA-1:exon:13971;Parent=Msa0895260-mRNA-1 |
| chr6_1 | exon | 82494831 | 82494938 | 82494831 | ID=Msa0895260-mRNA-1:exon:13970;Parent=Msa0895260-mRNA-1 |
| chr6_1 | exon | 82495117 | 82495176 | 82495117 | ID=Msa0895260-mRNA-1:exon:13969;Parent=Msa0895260-mRNA-1 |
| chr6_1 | exon | 82496165 | 82496263 | 82496165 | ID=Msa0895260-mRNA-1:exon:13968;Parent=Msa0895260-mRNA-1 |
| chr6_1 | exon | 82497653 | 82497677 | 82497653 | ID=Msa0895260-mRNA-1:exon:13967;Parent=Msa0895260-mRNA-1 |
| chr6_1 | exon | 82497796 | 82497821 | 82497796 | ID=Msa0895260-mRNA-1:exon:13966;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82497796 | 82497821 | 82497796 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82497653 | 82497677 | 82497653 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82496165 | 82496263 | 82496165 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82495117 | 82495176 | 82495117 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82494831 | 82494938 | 82494831 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82494142 | 82494237 | 82494142 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | CDS | 82493794 | 82494036 | 82493794 | ID=Msa0895260-mRNA-1:cds;Parent=Msa0895260-mRNA-1 |
| chr6_1 | three_prime_UTR | 82493457 | 82493793 | 82493457 | ID=Msa0895260-mRNA-1:three_prime_utr;Parent=Msa0895260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
