Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994500 | XP_039685042.1 | 93.714 | 175 | 7 | 1 | 48 | 218 | 171 | 345 | 1.53e-112 | 335 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994500 | G7IAR4 | 92.248 | 129 | 10 | 0 | 71 | 199 | 222 | 350 | 2.45e-78 | 249 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0014710 | Msa0994500 | 0.825403 | 4.777123e-54 | -8.615850e-47 |
Msa0766630 | Msa0994500 | 0.804855 | 1.767937e-49 | -8.615850e-47 |
Msa0895260 | Msa0994500 | 0.954249 | 4.523817e-112 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994500 | MtrunA17_Chr1g0203821 | 92.248 | 129 | 10 | 0 | 71 | 199 | 222 | 350 | 4.72e-82 | 249 |
Msa0994500 | MtrunA17_Chr8g0365301 | 96.078 | 51 | 2 | 0 | 165 | 215 | 1 | 51 | 1.10e-27 | 99.8 |
Msa0994500 | MtrunA17_Chr4g0047511 | 94.118 | 51 | 3 | 0 | 165 | 215 | 1 | 51 | 4.01e-27 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994500 | AT5G52030.1 | 54.023 | 174 | 72 | 4 | 35 | 201 | 57 | 229 | 1.79e-53 | 172 |
Msa0994500 | AT5G52030.2 | 54.023 | 174 | 72 | 4 | 35 | 201 | 201 | 373 | 1.79e-51 | 171 |
Find 50 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTGATGTCATTAATTTAA+TGG | 0.159794 | 6_4:-69344781 | Msa0994500:CDS |
TTTAGTCCTGCCAATAAAAT+TGG | 0.191313 | 6_4:-69347136 | Msa0994500:CDS |
AGGCTGTGAATAACTGTAAA+AGG | 0.213580 | 6_4:-69344929 | Msa0994500:CDS |
TTTCTGGCAGTGAAAGAAAA+TGG | 0.264695 | 6_4:-69344556 | Msa0994500:three_prime_UTR |
TTTCTTTCACTGCCAGAAAT+TGG | 0.294832 | 6_4:+69344560 | None:intergenic |
GAGTGGAGTAGACCAATTTC+TGG | 0.326465 | 6_4:-69344572 | Msa0994500:three_prime_UTR |
CAAATAGCTGAGAAGTTAGA+AGG | 0.389483 | 6_4:-69344530 | Msa0994500:three_prime_UTR |
GAGCATGGAAGGCTTTGAAT+TGG | 0.390401 | 6_4:-69345852 | Msa0994500:CDS |
TTGAGATTTCGAGACCTTGC+TGG | 0.392448 | 6_4:-69344837 | Msa0994500:CDS |
TATGCACTATTAGCCGATAC+AGG | 0.408888 | 6_4:-69344864 | Msa0994500:CDS |
TTAATGGTTCTTTATAGCTT+AGG | 0.424486 | 6_4:-69344765 | Msa0994500:CDS |
GTATCAGAACTCTTGCTTCA+AGG | 0.434040 | 6_4:-69344706 | Msa0994500:three_prime_UTR |
AAAAGGGTGGTAGGTGTGAT+TGG | 0.444853 | 6_4:-69344912 | Msa0994500:CDS |
ATACCACTAATTGACAAAAC+AGG | 0.448524 | 6_4:-69344728 | Msa0994500:exon |
AGCTGAGAAGTTAGAAGGAA+GGG | 0.452156 | 6_4:-69344525 | Msa0994500:three_prime_UTR |
ATGTATAAGAGGTGGCAATA+AGG | 0.459297 | 6_4:+69345097 | None:intergenic |
TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | 6_4:-69347191 | Msa0994500:intron |
ATATATCTAAACTTAATATC+AGG | 0.468076 | 6_4:+69344461 | None:intergenic |
TTCTGGCAGTGAAAGAAAAT+GGG | 0.483622 | 6_4:-69344555 | Msa0994500:three_prime_UTR |
GTGGTAGGTGTGATTGGAAA+AGG | 0.496641 | 6_4:-69344906 | Msa0994500:CDS |
ATGGTCTCTGAAGCGGAGAA+AGG | 0.510965 | 6_4:-69344949 | Msa0994500:CDS |
CTGTTCTGCAGTATCTTGCA+TGG | 0.516086 | 6_4:-69344968 | Msa0994500:intron |
CATTATCAGCCACTGTATCA+TGG | 0.521613 | 6_4:-69344598 | Msa0994500:three_prime_UTR |
AAATCTCAAATTCCCTGTAT+CGG | 0.524931 | 6_4:+69344851 | None:intergenic |
AGTCCTGCCAATAAAATTGG+AGG | 0.527309 | 6_4:-69347133 | Msa0994500:CDS |
GTATCTCGTTCATGTATAAG+AGG | 0.530170 | 6_4:+69345086 | None:intergenic |
TGAGATTTCGAGACCTTGCT+GGG | 0.531713 | 6_4:-69344836 | Msa0994500:CDS |
TAGCTGAGAAGTTAGAAGGA+AGG | 0.540309 | 6_4:-69344526 | Msa0994500:three_prime_UTR |
GGCTGTGAATAACTGTAAAA+GGG | 0.547115 | 6_4:-69344928 | Msa0994500:CDS |
GTAGCTTCAGAGAGCATGGA+AGG | 0.554057 | 6_4:-69345863 | Msa0994500:intron |
GTCCTGCCAATAAAATTGGA+GGG | 0.554106 | 6_4:-69347132 | Msa0994500:CDS |
ATAAGAGGTGGCAATAAGGA+TGG | 0.555215 | 6_4:+69345101 | None:intergenic |
CCACTGTATCATGGTGAGAG+TGG | 0.556085 | 6_4:-69344589 | Msa0994500:three_prime_UTR |
GAGAAGTTAGAAGGAAGGGT+TGG | 0.557009 | 6_4:-69344521 | Msa0994500:three_prime_UTR |
ATTGGAAAAGGCCACATGAA+TGG | 0.567386 | 6_4:-69344894 | Msa0994500:CDS |
GATTTCTACAAATAAGCTTG+AGG | 0.582194 | 6_4:-69345773 | Msa0994500:intron |
ATCTTGCATGGTCTCTGAAG+CGG | 0.593986 | 6_4:-69344956 | Msa0994500:CDS |
TCCTGCCAATAAAATTGGAG+GGG | 0.601474 | 6_4:-69347131 | Msa0994500:CDS |
AATAACTGTAAAAGGGTGGT+AGG | 0.617141 | 6_4:-69344921 | Msa0994500:CDS |
CCTGCCAATAAAATTGGAGG+GGG | 0.623892 | 6_4:-69347130 | Msa0994500:CDS |
ATGCACTATTAGCCGATACA+GGG | 0.626021 | 6_4:-69344863 | Msa0994500:CDS |
CTGATGAAGATGTTATTCCA+CGG | 0.640766 | 6_4:+69345797 | None:intergenic |
TTATTGACGATAGTTATCCG+TGG | 0.648146 | 6_4:-69345814 | Msa0994500:CDS |
TCTCGTTCATGTATAAGAGG+TGG | 0.648526 | 6_4:+69345089 | None:intergenic |
GCAAGCAGTGTAGAGTGCGA+TGG | 0.650454 | 6_4:-69344499 | Msa0994500:three_prime_UTR |
TTAGATGCAGCATGTAACTG+AGG | 0.670877 | 6_4:+69346079 | None:intergenic |
CCACTCTCACCATGATACAG+TGG | 0.674658 | 6_4:+69344589 | None:intergenic |
CATATATTACACCATTCATG+TGG | 0.675235 | 6_4:+69344883 | None:intergenic |
TGTGAATAACTGTAAAAGGG+TGG | 0.676596 | 6_4:-69344925 | Msa0994500:CDS |
TAAGAGATTCAACATTCACA+TGG | 0.722671 | 6_4:-69346059 | Msa0994500:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCTATGTTTATATGTTTTT+GGG | - | chr6_4:69344707-69344726 | Msa0994500:three_prime_UTR | 15.0% |
!!! | AATTTTTCTTTTTGAAAACA+AGG | - | chr6_4:69344959-69344978 | Msa0994500:CDS | 15.0% |
!!! | ATTTTAAATTCTGTATGATA+AGG | - | chr6_4:69345152-69345171 | Msa0994500:CDS | 15.0% |
!! | TTTGAATTGTTAAAATTTGA+TGG | - | chr6_4:69345506-69345525 | Msa0994500:intron | 15.0% |
!!! | CAAGTTTTTGAAAATTAATA+AGG | - | chr6_4:69346913-69346932 | Msa0994500:intron | 15.0% |
!! | TAAGATCATATATAATACTT+CGG | + | chr6_4:69347231-69347250 | None:intergenic | 15.0% |
!!! | TTTACTATTTTTTATGTTAC+AGG | - | chr6_4:69347425-69347444 | Msa0994500:intron | 15.0% |
!!! | ACTAAATATCATTTTAAAAG+GGG | + | chr6_4:69347472-69347491 | None:intergenic | 15.0% |
!!! | GACTAAATATCATTTTAAAA+GGG | + | chr6_4:69347473-69347492 | None:intergenic | 15.0% |
!!! | ATTGTTTTCTTTAAAATTGT+TGG | - | chr6_4:69348494-69348513 | Msa0994500:intron | 15.0% |
!! | ATATATCTAAACTTAATATC+AGG | + | chr6_4:69348684-69348703 | None:intergenic | 15.0% |
!!! | GTTCTATGTTTATATGTTTT+TGG | - | chr6_4:69344706-69344725 | Msa0994500:three_prime_UTR | 20.0% |
!! | ATAGTGTTTGATACAAAATT+TGG | - | chr6_4:69344802-69344821 | Msa0994500:CDS | 20.0% |
!! | TAGTGTTTGATACAAAATTT+GGG | - | chr6_4:69344803-69344822 | Msa0994500:CDS | 20.0% |
!! | ATTTGAATAAGAATGACATT+TGG | - | chr6_4:69345058-69345077 | Msa0994500:intron | 20.0% |
!! | TGAGAATAAAGTTATAATGA+TGG | - | chr6_4:69345366-69345385 | Msa0994500:intron | 20.0% |
!! | TACAAATGAATAAACTTGTA+TGG | + | chr6_4:69345442-69345461 | None:intergenic | 20.0% |
!! | AAAGTAATGTTGTTAAATCA+TGG | + | chr6_4:69345816-69345835 | None:intergenic | 20.0% |
!!! | AATGAATTTTTCCAAATTCA+TGG | - | chr6_4:69346362-69346381 | Msa0994500:intron | 20.0% |
!! | TGCATTTATGAATATACTTT+GGG | - | chr6_4:69346680-69346699 | Msa0994500:intron | 20.0% |
!!! | TTAGTGAAATTTTGAAACAA+TGG | - | chr6_4:69347167-69347186 | Msa0994500:CDS | 20.0% |
!!! | TAGTGAAATTTTGAAACAAT+GGG | - | chr6_4:69347168-69347187 | Msa0994500:CDS | 20.0% |
!!! | GAAGTATTATATATGATCTT+AGG | - | chr6_4:69347230-69347249 | Msa0994500:intron | 20.0% |
!!! | GGACTAAATATCATTTTAAA+AGG | + | chr6_4:69347474-69347493 | None:intergenic | 20.0% |
!!! | ATTAATAAAGTACTCAGAAT+AGG | + | chr6_4:69347684-69347703 | None:intergenic | 20.0% |
!! | ATTCTGAGTACTTTATTAAT+TGG | - | chr6_4:69347684-69347703 | Msa0994500:intron | 20.0% |
!! | TTCTGAGTACTTTATTAATT+GGG | - | chr6_4:69347685-69347704 | Msa0994500:intron | 20.0% |
!! | ATATATAAAACTCTCAACTA+AGG | - | chr6_4:69347859-69347878 | Msa0994500:intron | 20.0% |
!! | GATTGATGTCATTAATTTAA+TGG | - | chr6_4:69348361-69348380 | Msa0994500:intron | 20.0% |
!! | TTTGTTCAGGTTTATTTAGA+AGG | - | chr6_4:69344417-69344436 | Msa0994500:three_prime_UTR | 25.0% |
!!! | TGGTTTTGATTTTCTTTTTC+AGG | - | chr6_4:69344547-69344566 | Msa0994500:three_prime_UTR | 25.0% |
!! | AAGTAAGTGTTTGAGATAAT+TGG | - | chr6_4:69344829-69344848 | Msa0994500:CDS | 25.0% |
!! | GAGATTTTTGCTAAATTCTT+TGG | - | chr6_4:69344981-69345000 | Msa0994500:intron | 25.0% |
!!! | TGCTAAATTCTTTGGAATAT+TGG | - | chr6_4:69344989-69345008 | Msa0994500:intron | 25.0% |
!! | AATATTGGACTGATTTCATT+AGG | - | chr6_4:69345004-69345023 | Msa0994500:intron | 25.0% |
!! | AAAAGTTTTCATACACTGAT+TGG | - | chr6_4:69345088-69345107 | Msa0994500:CDS | 25.0% |
! | GATTCTAAATGTTGTATCTA+AGG | - | chr6_4:69345174-69345193 | Msa0994500:intron | 25.0% |
!! | TAGACTTTTGATGAAGAATT+TGG | - | chr6_4:69345212-69345231 | Msa0994500:intron | 25.0% |
!!! | AATTTTAAGTTCTTGTGGTT+TGG | - | chr6_4:69345315-69345334 | Msa0994500:intron | 25.0% |
! | TAGAATTGTGATGTAGAATT+TGG | - | chr6_4:69345582-69345601 | Msa0994500:intron | 25.0% |
! | AAGCTTCATTTAGAGAATTA+AGG | - | chr6_4:69345633-69345652 | Msa0994500:intron | 25.0% |
! | AGCTTCATTTAGAGAATTAA+GGG | - | chr6_4:69345634-69345653 | Msa0994500:intron | 25.0% |
!!! | GCTGATATATGAGATTTTTT+GGG | + | chr6_4:69345725-69345744 | None:intergenic | 25.0% |
!!! | AGCTGATATATGAGATTTTT+TGG | + | chr6_4:69345726-69345745 | None:intergenic | 25.0% |
! | CCACATAAATAAAAGGATTT+AGG | + | chr6_4:69345861-69345880 | None:intergenic | 25.0% |
!!! | CCTAAATCCTTTTATTTATG+TGG | - | chr6_4:69345858-69345877 | Msa0994500:CDS | 25.0% |
!!! | ATCCTTTTATTTATGTGGAA+AGG | - | chr6_4:69345863-69345882 | Msa0994500:intron | 25.0% |
! | TCATACTAAACGATAAGAAA+AGG | + | chr6_4:69346097-69346116 | None:intergenic | 25.0% |
!! | GAAAATTTGGTTAAGTTGTA+TGG | - | chr6_4:69346259-69346278 | Msa0994500:intron | 25.0% |
! | GTGCATTTATGAATATACTT+TGG | - | chr6_4:69346679-69346698 | Msa0994500:intron | 25.0% |
!! | GAAGTATTATGTATGTTCTT+TGG | - | chr6_4:69347199-69347218 | Msa0994500:intron | 25.0% |
! | TATATATGATCTTAGGATGA+TGG | - | chr6_4:69347237-69347256 | Msa0994500:intron | 25.0% |
! | AAAATTGAGATTGACATTCT+AGG | + | chr6_4:69347407-69347426 | None:intergenic | 25.0% |
! | AAGATTTCACTATAACTGAA+TGG | + | chr6_4:69347767-69347786 | None:intergenic | 25.0% |
!! | TATAGTGAAATCTTTTACGA+TGG | - | chr6_4:69347773-69347792 | Msa0994500:intron | 25.0% |
! | TTAATGGTTCTTTATAGCTT+AGG | - | chr6_4:69348377-69348396 | Msa0994500:intron | 25.0% |
! | TGGTTTTCATCTTTTTGTTC+AGG | - | chr6_4:69344404-69344423 | Msa0994500:three_prime_UTR | 30.0% |
CAAACCTAGAACAAAAACAA+AGG | + | chr6_4:69344529-69344548 | None:intergenic | 30.0% | |
!!! | CTTTGTTTTTGTTCTAGGTT+TGG | - | chr6_4:69344527-69344546 | Msa0994500:three_prime_UTR | 30.0% |
!!! | TTTGTTGTTGTTTTGTGCTT+TGG | - | chr6_4:69344679-69344698 | Msa0994500:three_prime_UTR | 30.0% |
!! | ATCACAAACACTGATTCAAA+TGG | + | chr6_4:69344913-69344932 | None:intergenic | 30.0% |
! | GAAGAATTTGGAACCAATAT+TGG | - | chr6_4:69345224-69345243 | Msa0994500:intron | 30.0% |
! | TAGTCTTGGTTTAACTTTGT+TGG | - | chr6_4:69345255-69345274 | Msa0994500:intron | 30.0% |
ATTGTCATCTTGAAATTTGC+TGG | - | chr6_4:69345291-69345310 | Msa0994500:intron | 30.0% | |
!!! | CTGGAAATTTTAAGTTCTTG+TGG | - | chr6_4:69345310-69345329 | Msa0994500:intron | 30.0% |
ATAAAACCAAAGTAGTCCAA+TGG | + | chr6_4:69345474-69345493 | None:intergenic | 30.0% | |
!! | AAAATTTGCTGGTATAGTGT+TGG | - | chr6_4:69345532-69345551 | Msa0994500:intron | 30.0% |
TTGTGATGTAGAATTTGGAA+TGG | - | chr6_4:69345587-69345606 | Msa0994500:intron | 30.0% | |
! | TAGAATTTGGAATGGAATGA+TGG | - | chr6_4:69345595-69345614 | Msa0994500:intron | 30.0% |
TCATTTAGAGAATTAAGGGT+TGG | - | chr6_4:69345638-69345657 | Msa0994500:intron | 30.0% | |
CATTTAGAGAATTAAGGGTT+GGG | - | chr6_4:69345639-69345658 | Msa0994500:intron | 30.0% | |
AAAATCTCATATATCAGCTC+TGG | - | chr6_4:69345727-69345746 | Msa0994500:intron | 30.0% | |
CTCCTTTCCACATAAATAAA+AGG | + | chr6_4:69345868-69345887 | None:intergenic | 30.0% | |
TTATTTATGTGGAAAGGAGA+TGG | - | chr6_4:69345869-69345888 | Msa0994500:intron | 30.0% | |
TTTAGTCCTGCCAATAAAAT+TGG | - | chr6_4:69346006-69346025 | Msa0994500:intron | 30.0% | |
ACCTTAATTGTATTACGATG+TGG | - | chr6_4:69346118-69346137 | Msa0994500:intron | 30.0% | |
TCCACATCGTAATACAATTA+AGG | + | chr6_4:69346122-69346141 | None:intergenic | 30.0% | |
TGAAGTAGAGCATGAAAATT+TGG | - | chr6_4:69346246-69346265 | Msa0994500:intron | 30.0% | |
! | CAATAAAGCATCCATGAATT+TGG | + | chr6_4:69346376-69346395 | None:intergenic | 30.0% |
ACAGTAGTATCTACTTTGAT+TGG | - | chr6_4:69346455-69346474 | Msa0994500:intron | 30.0% | |
GAAAATGCAGAGAAATTTCA+TGG | + | chr6_4:69346711-69346730 | None:intergenic | 30.0% | |
AAAAACTTGTGATCTGACTT+TGG | + | chr6_4:69346902-69346921 | None:intergenic | 30.0% | |
! | CAAATGATAATGAACGTGTT+AGG | + | chr6_4:69347022-69347041 | None:intergenic | 30.0% |
ACACGTTCATTATCATTTGT+AGG | - | chr6_4:69347023-69347042 | Msa0994500:intron | 30.0% | |
TAAGAGATTCAACATTCACA+TGG | - | chr6_4:69347083-69347102 | Msa0994500:intron | 30.0% | |
ATTCACATGGTAGTATTCTA+TGG | - | chr6_4:69347096-69347115 | Msa0994500:intron | 30.0% | |
!!! | TATGGTCTCGATATTTTTTG+TGG | - | chr6_4:69347114-69347133 | Msa0994500:CDS | 30.0% |
!!! | ATGGTCTCGATATTTTTTGT+GGG | - | chr6_4:69347115-69347134 | Msa0994500:CDS | 30.0% |
!!! | ATATTTTTTGTGGGGGAATA+AGG | - | chr6_4:69347124-69347143 | Msa0994500:CDS | 30.0% |
!!! | TATTTTTTGTGGGGGAATAA+GGG | - | chr6_4:69347125-69347144 | Msa0994500:CDS | 30.0% |
GATTTCTACAAATAAGCTTG+AGG | - | chr6_4:69347369-69347388 | Msa0994500:intron | 30.0% | |
AATGATATTTAGTCCTGTTC+CGG | - | chr6_4:69347479-69347498 | Msa0994500:intron | 30.0% | |
! | TTGTGTTTAGGTTAAATGAG+AGG | - | chr6_4:69347554-69347573 | Msa0994500:intron | 30.0% |
AGCAGAAATCTTAGCTAAAT+GGG | + | chr6_4:69347607-69347626 | None:intergenic | 30.0% | |
ACAACTTATTTCAATACCCT+TGG | + | chr6_4:69347731-69347750 | None:intergenic | 30.0% | |
TTTCACTATAACTGAATGGT+TGG | + | chr6_4:69347763-69347782 | None:intergenic | 30.0% | |
AAAACTAAAGAGCCAAATCT+TGG | - | chr6_4:69347949-69347968 | Msa0994500:intron | 30.0% | |
CATATATTACACCATTCATG+TGG | + | chr6_4:69348262-69348281 | None:intergenic | 30.0% | |
AAATCTCAAATTCCCTGTAT+CGG | + | chr6_4:69348294-69348313 | None:intergenic | 30.0% | |
CTGGGAAAAATTCAAATGAT+GGG | - | chr6_4:69348324-69348343 | Msa0994500:intron | 30.0% | |
TGGGAAAAATTCAAATGATG+GGG | - | chr6_4:69348325-69348344 | Msa0994500:intron | 30.0% | |
ATACCACTAATTGACAAAAC+AGG | - | chr6_4:69348414-69348433 | Msa0994500:intron | 30.0% | |
! | ATACCTGTTTTGTCAATTAG+TGG | + | chr6_4:69348420-69348439 | None:intergenic | 30.0% |
! | ATTTAGAAGGTAGCAGCTTT+TGG | - | chr6_4:69344430-69344449 | Msa0994500:three_prime_UTR | 35.0% |
ACTCAAACCTTAAAACAGCA+AGG | + | chr6_4:69344463-69344482 | None:intergenic | 35.0% | |
!!! | GTGTCCTTTGTTTTTGTTCT+AGG | - | chr6_4:69344522-69344541 | Msa0994500:three_prime_UTR | 35.0% |
! | GACTGATTTCATTAGGTGTA+GGG | - | chr6_4:69345011-69345030 | Msa0994500:intron | 35.0% |
! | GTATCTAAGGTGTGAAAATC+TGG | - | chr6_4:69345187-69345206 | Msa0994500:intron | 35.0% |
! | TTTGGAACCAATATTGGAAC+TGG | - | chr6_4:69345230-69345249 | Msa0994500:intron | 35.0% |
GACTATACCAGTTCCAATAT+TGG | + | chr6_4:69345240-69345259 | None:intergenic | 35.0% | |
TATTGGAACTGGTATAGTCT+TGG | - | chr6_4:69345241-69345260 | Msa0994500:intron | 35.0% | |
ATTTGTAGTCTATGAGCCAT+TGG | - | chr6_4:69345455-69345474 | Msa0994500:intron | 35.0% | |
! | TTTGATGGCTGAAAATTTGC+TGG | - | chr6_4:69345521-69345540 | Msa0994500:intron | 35.0% |
! | CTTGGTTACAGTTCCAATTT+TGG | + | chr6_4:69345671-69345690 | None:intergenic | 35.0% |
AAATTGGAACTGTAACCAAG+TGG | - | chr6_4:69345671-69345690 | Msa0994500:intron | 35.0% | |
ATATCTATCCCTGTCTTTAC+AGG | - | chr6_4:69345936-69345955 | Msa0994500:intron | 35.0% | |
TATTACGATGTGGATGACTA+GGG | - | chr6_4:69346128-69346147 | Msa0994500:intron | 35.0% | |
TTTCAGCTGAATCAAGACAA+GGG | - | chr6_4:69346188-69346207 | Msa0994500:intron | 35.0% | |
GTTGTGTTGAAAGAAATAGC+AGG | - | chr6_4:69346284-69346303 | Msa0994500:intron | 35.0% | |
GTGAAAGGCTATTATTCTCA+AGG | + | chr6_4:69346327-69346346 | None:intergenic | 35.0% | |
TACCTAGAAGAGTTTGTGAA+AGG | + | chr6_4:69346342-69346361 | None:intergenic | 35.0% | |
! | GATTTTTCCTCCTCTTTAGT+TGG | - | chr6_4:69346427-69346446 | Msa0994500:intron | 35.0% |
TCTTTGTCAAGGAGAATGAT+AGG | + | chr6_4:69346550-69346569 | None:intergenic | 35.0% | |
AGACCAAAATCCGAAATCTT+CGG | + | chr6_4:69346580-69346599 | None:intergenic | 35.0% | |
ACAAAATCTGATTGAAGCGT+TGG | + | chr6_4:69346650-69346669 | None:intergenic | 35.0% | |
CACTAGATTTGCATCTTTCT+TGG | - | chr6_4:69346953-69346972 | Msa0994500:intron | 35.0% | |
CGTTCATTATCATTTGTAGG+CGG | - | chr6_4:69347026-69347045 | Msa0994500:intron | 35.0% | |
!!! | TGGTCTCGATATTTTTTGTG+GGG | - | chr6_4:69347116-69347135 | Msa0994500:CDS | 35.0% |
TTATTGACGATAGTTATCCG+TGG | - | chr6_4:69347328-69347347 | Msa0994500:intron | 35.0% | |
CTGATGAAGATGTTATTCCA+CGG | + | chr6_4:69347348-69347367 | None:intergenic | 35.0% | |
ATGATATTTAGTCCTGTTCC+GGG | - | chr6_4:69347480-69347499 | Msa0994500:intron | 35.0% | |
!!! | AAGGTTGGTGTTTTGTGTTT+AGG | - | chr6_4:69347542-69347561 | Msa0994500:intron | 35.0% |
TTAGGTTAAATGAGAGGCTT+AGG | - | chr6_4:69347560-69347579 | Msa0994500:intron | 35.0% | |
GCAGAAATCTTAGCTAAATG+GGG | + | chr6_4:69347606-69347625 | None:intergenic | 35.0% | |
GAGCAGAAATCTTAGCTAAA+TGG | + | chr6_4:69347608-69347627 | None:intergenic | 35.0% | |
! | GAAATCTTTTACGATGGTTC+AGG | - | chr6_4:69347779-69347798 | Msa0994500:intron | 35.0% |
CTGCAACTAATACCAAGATT+TGG | + | chr6_4:69347964-69347983 | None:intergenic | 35.0% | |
ATGTATAAGAGGTGGCAATA+AGG | + | chr6_4:69348048-69348067 | None:intergenic | 35.0% | |
GTATCTCGTTCATGTATAAG+AGG | + | chr6_4:69348059-69348078 | None:intergenic | 35.0% | |
! | CCATTGTTTACTTGAGTTGT+AGG | + | chr6_4:69348144-69348163 | None:intergenic | 35.0% |
CCTACAACTCAAGTAAACAA+TGG | - | chr6_4:69348141-69348160 | Msa0994500:intron | 35.0% | |
AGGCTGTGAATAACTGTAAA+AGG | - | chr6_4:69348213-69348232 | Msa0994500:intron | 35.0% | |
GGCTGTGAATAACTGTAAAA+GGG | - | chr6_4:69348214-69348233 | Msa0994500:intron | 35.0% | |
TGTGAATAACTGTAAAAGGG+TGG | - | chr6_4:69348217-69348236 | Msa0994500:intron | 35.0% | |
AATAACTGTAAAAGGGTGGT+AGG | - | chr6_4:69348221-69348240 | Msa0994500:intron | 35.0% | |
! | CATTTGAATTTTTCCCAGCA+AGG | + | chr6_4:69348322-69348341 | None:intergenic | 35.0% |
GCTGGGAAAAATTCAAATGA+TGG | - | chr6_4:69348323-69348342 | Msa0994500:intron | 35.0% | |
GGGAAAAATTCAAATGATGG+GGG | - | chr6_4:69348326-69348345 | Msa0994500:intron | 35.0% | |
TTTCTTTCACTGCCAGAAAT+TGG | + | chr6_4:69348585-69348604 | None:intergenic | 35.0% | |
! | TTTCTGGCAGTGAAAGAAAA+TGG | - | chr6_4:69348586-69348605 | Msa0994500:intron | 35.0% |
TTCTGGCAGTGAAAGAAAAT+GGG | - | chr6_4:69348587-69348606 | Msa0994500:intron | 35.0% | |
CAAATAGCTGAGAAGTTAGA+AGG | - | chr6_4:69348612-69348631 | Msa0994500:intron | 35.0% | |
ACCTTAAAACAGCAAGGAAC+CGG | + | chr6_4:69344457-69344476 | None:intergenic | 40.0% | |
! | GGACTGATTTCATTAGGTGT+AGG | - | chr6_4:69345010-69345029 | Msa0994500:intron | 40.0% |
TATGAGCCATTGGACTACTT+TGG | - | chr6_4:69345465-69345484 | Msa0994500:intron | 40.0% | |
!! | TATAGTGTTGGTTCTGTCCA+GGG | - | chr6_4:69345544-69345563 | Msa0994500:intron | 40.0% |
TATACCAAATTATCCCACCC+TGG | + | chr6_4:69345564-69345583 | None:intergenic | 40.0% | |
GGTTGGGTTTGAACCAAAAT+TGG | - | chr6_4:69345655-69345674 | Msa0994500:intron | 40.0% | |
TTCATTAATAGCCTGCCACT+TGG | + | chr6_4:69345689-69345708 | None:intergenic | 40.0% | |
TTTACAGGAGCTCGAATTGA+AGG | - | chr6_4:69345951-69345970 | Msa0994500:intron | 40.0% | |
AGTCCTGCCAATAAAATTGG+AGG | - | chr6_4:69346009-69346028 | Msa0994500:intron | 40.0% | |
GTCCTGCCAATAAAATTGGA+GGG | - | chr6_4:69346010-69346029 | Msa0994500:intron | 40.0% | |
TCCTGCCAATAAAATTGGAG+GGG | - | chr6_4:69346011-69346030 | Msa0994500:intron | 40.0% | |
!!! | TGGTTTTGGTTCTGTCTACA+TGG | - | chr6_4:69346035-69346054 | Msa0994500:intron | 40.0% |
GGAACGAAAAAACAACGATC+AGG | + | chr6_4:69346076-69346095 | None:intergenic | 40.0% | |
GTATTACGATGTGGATGACT+AGG | - | chr6_4:69346127-69346146 | Msa0994500:intron | 40.0% | |
CTTTCAGCTGAATCAAGACA+AGG | - | chr6_4:69346187-69346206 | Msa0994500:intron | 40.0% | |
TTCAGCTGAATCAAGACAAG+GGG | - | chr6_4:69346189-69346208 | Msa0994500:intron | 40.0% | |
AGCCTTTCACAAACTCTTCT+AGG | - | chr6_4:69346337-69346356 | Msa0994500:intron | 40.0% | |
! | TTTTCCTCCTCTTTAGTTGG+AGG | - | chr6_4:69346430-69346449 | Msa0994500:intron | 40.0% |
! | ATATGTGTTGACATTGCACG+CGG | - | chr6_4:69346493-69346512 | Msa0994500:intron | 40.0% |
TTGTCAAGGAGAATGATAGG+AGG | + | chr6_4:69346547-69346566 | None:intergenic | 40.0% | |
AGACCTTACACCGAAGATTT+CGG | - | chr6_4:69346567-69346586 | Msa0994500:intron | 40.0% | |
! | AATCCGAAATCTTCGGTGTA+AGG | + | chr6_4:69346573-69346592 | None:intergenic | 40.0% |
! | ACACCGAAGATTTCGGATTT+TGG | - | chr6_4:69346574-69346593 | Msa0994500:intron | 40.0% |
GTGTAGTAGCCGAAAAATCT+TGG | - | chr6_4:69346783-69346802 | Msa0994500:intron | 40.0% | |
! | CGTTGCTAGCCAAGATTTTT+CGG | + | chr6_4:69346795-69346814 | None:intergenic | 40.0% |
TTAGATGCAGCATGTAACTG+AGG | + | chr6_4:69347066-69347085 | None:intergenic | 40.0% | |
!!! | GGTCTCGATATTTTTTGTGG+GGG | - | chr6_4:69347117-69347136 | Msa0994500:CDS | 40.0% |
! | TTTTGTAGCTTCAGAGAGCA+TGG | - | chr6_4:69347275-69347294 | Msa0994500:intron | 40.0% |
GGGATCAAGCATATAAAAGC+AGG | + | chr6_4:69347452-69347471 | None:intergenic | 40.0% | |
CAAAACACCAACCTTGAACA+TGG | + | chr6_4:69347537-69347556 | None:intergenic | 40.0% | |
AGCTAAGATTTCTGCTCTGT+AGG | - | chr6_4:69347611-69347630 | Msa0994500:intron | 40.0% | |
ACCAAAACCGTAGCTTAGTA+GGG | + | chr6_4:69347639-69347658 | None:intergenic | 40.0% | |
AACCAAAACCGTAGCTTAGT+AGG | + | chr6_4:69347640-69347659 | None:intergenic | 40.0% | |
!! | TACTAAGCTACGGTTTTGGT+TGG | - | chr6_4:69347639-69347658 | Msa0994500:intron | 40.0% |
!!! | ACTAAGCTACGGTTTTGGTT+GGG | - | chr6_4:69347640-69347659 | Msa0994500:intron | 40.0% |
! | AAAGTACTCAGAATAGGCGT+AGG | + | chr6_4:69347678-69347697 | None:intergenic | 40.0% |
ATTAAACAGTTCGCAGACCA+AGG | - | chr6_4:69347711-69347730 | Msa0994500:intron | 40.0% | |
TTAAACAGTTCGCAGACCAA+GGG | - | chr6_4:69347712-69347731 | Msa0994500:intron | 40.0% | |
GAAAAACTGAGCTGCTCATA+AGG | + | chr6_4:69348017-69348036 | None:intergenic | 40.0% | |
ATAAGAGGTGGCAATAAGGA+TGG | + | chr6_4:69348044-69348063 | None:intergenic | 40.0% | |
TCTCGTTCATGTATAAGAGG+TGG | + | chr6_4:69348056-69348075 | None:intergenic | 40.0% | |
!!! | CGATGCAATTTTTGAGTGAG+AGG | + | chr6_4:69348096-69348115 | None:intergenic | 40.0% |
TAGGACTTGTCACATGCAAA+AGG | + | chr6_4:69348125-69348144 | None:intergenic | 40.0% | |
ATTGGAAAAGGCCACATGAA+TGG | - | chr6_4:69348248-69348267 | Msa0994500:intron | 40.0% | |
TATGCACTATTAGCCGATAC+AGG | - | chr6_4:69348278-69348297 | Msa0994500:intron | 40.0% | |
ATGCACTATTAGCCGATACA+GGG | - | chr6_4:69348279-69348298 | Msa0994500:intron | 40.0% | |
! | TCAAATGATGGGGGTTGTAA+TGG | - | chr6_4:69348335-69348354 | Msa0994500:intron | 40.0% |
GTATCAGAACTCTTGCTTCA+AGG | - | chr6_4:69348436-69348455 | Msa0994500:intron | 40.0% | |
CATTATCAGCCACTGTATCA+TGG | - | chr6_4:69348544-69348563 | Msa0994500:intron | 40.0% | |
TAGCTGAGAAGTTAGAAGGA+AGG | - | chr6_4:69348616-69348635 | Msa0994500:intron | 40.0% | |
AGCTGAGAAGTTAGAAGGAA+GGG | - | chr6_4:69348617-69348636 | Msa0994500:intron | 40.0% | |
!!! | TCCGGTTCCTTGCTGTTTTA+AGG | - | chr6_4:69344453-69344472 | Msa0994500:three_prime_UTR | 45.0% |
GGGTCTGTGTTTGACACAAT+TGG | - | chr6_4:69344727-69344746 | Msa0994500:exon | 45.0% | |
AGGTGTAGGGCTCATAGATA+TGG | - | chr6_4:69345024-69345043 | Msa0994500:intron | 45.0% | |
!! | GTATAGTGTTGGTTCTGTCC+AGG | - | chr6_4:69345543-69345562 | Msa0994500:intron | 45.0% |
AGAACTTTGCAGCTGCAGTT+TGG | - | chr6_4:69345906-69345925 | Msa0994500:intron | 45.0% | |
TTCGAGCTCCTGTAAAGACA+GGG | + | chr6_4:69345947-69345966 | None:intergenic | 45.0% | |
ATTCGAGCTCCTGTAAAGAC+AGG | + | chr6_4:69345948-69345967 | None:intergenic | 45.0% | |
CCTGCCAATAAAATTGGAGG+GGG | - | chr6_4:69346012-69346031 | Msa0994500:intron | 45.0% | |
! | ACCACCCCCTCCAATTTTAT+TGG | + | chr6_4:69346019-69346038 | None:intergenic | 45.0% |
! | AAAATTGGAGGGGGTGGTTT+TGG | - | chr6_4:69346021-69346040 | Msa0994500:intron | 45.0% |
GACTAGGGACGACTGAAAAA+TGG | - | chr6_4:69346143-69346162 | Msa0994500:intron | 45.0% | |
AGGGGTGAAAGAGTTCTTGA+CGG | - | chr6_4:69346207-69346226 | Msa0994500:intron | 45.0% | |
ACTGTGACCTCCAACTAAAG+AGG | + | chr6_4:69346440-69346459 | None:intergenic | 45.0% | |
! | TATGTGTTGACATTGCACGC+GGG | - | chr6_4:69346494-69346513 | Msa0994500:intron | 45.0% |
CCTGACTTCTTCGTGCAAAA+AGG | + | chr6_4:69346524-69346543 | None:intergenic | 45.0% | |
! | CCTTTTTGCACGAAGAAGTC+AGG | - | chr6_4:69346521-69346540 | Msa0994500:intron | 45.0% |
TCGGTGTAAGGTCTTTGTCA+AGG | + | chr6_4:69346561-69346580 | None:intergenic | 45.0% | |
CAACGTCAGTCTTTCATGTC+TGG | - | chr6_4:69346810-69346829 | Msa0994500:intron | 45.0% | |
!! | GAGCATGGAAGGCTTTGAAT+TGG | - | chr6_4:69347290-69347309 | Msa0994500:intron | 45.0% |
! | ACCCTACTAAGCTACGGTTT+TGG | - | chr6_4:69347635-69347654 | Msa0994500:intron | 45.0% |
!!! | CTAAGCTACGGTTTTGGTTG+GGG | - | chr6_4:69347641-69347660 | Msa0994500:intron | 45.0% |
CTGTTCTGCAGTATCTTGCA+TGG | - | chr6_4:69348174-69348193 | Msa0994500:intron | 45.0% | |
! | ATCTTGCATGGTCTCTGAAG+CGG | - | chr6_4:69348186-69348205 | Msa0994500:intron | 45.0% |
AAAAGGGTGGTAGGTGTGAT+TGG | - | chr6_4:69348230-69348249 | Msa0994500:intron | 45.0% | |
GTGGTAGGTGTGATTGGAAA+AGG | - | chr6_4:69348236-69348255 | Msa0994500:intron | 45.0% | |
TTGAGATTTCGAGACCTTGC+TGG | - | chr6_4:69348305-69348324 | Msa0994500:intron | 45.0% | |
TGAGATTTCGAGACCTTGCT+GGG | - | chr6_4:69348306-69348325 | Msa0994500:intron | 45.0% | |
GAGTGGAGTAGACCAATTTC+TGG | - | chr6_4:69348570-69348589 | Msa0994500:intron | 45.0% | |
GAGAAGTTAGAAGGAAGGGT+TGG | - | chr6_4:69348621-69348640 | Msa0994500:intron | 45.0% | |
!! | ATTATATGAAATAAAAAAAT+TGG | + | chr6_4:69348710-69348729 | None:intergenic | 5.0% |
! | GAAGGTAGCAGCTTTTGGTC+CGG | - | chr6_4:69344435-69344454 | Msa0994500:three_prime_UTR | 50.0% |
CTGTCCAGGGTGGGATAATT+TGG | - | chr6_4:69345557-69345576 | Msa0994500:intron | 50.0% | |
TGGAACTGTAACCAAGTGGC+AGG | - | chr6_4:69345675-69345694 | Msa0994500:intron | 50.0% | |
! | CCCCCTCCAATTTTATTGGC+AGG | + | chr6_4:69346015-69346034 | None:intergenic | 50.0% |
GCCAATAAAATTGGAGGGGG+TGG | - | chr6_4:69346015-69346034 | Msa0994500:intron | 50.0% | |
GTGACCTCCAACTAAAGAGG+AGG | + | chr6_4:69346437-69346456 | None:intergenic | 50.0% | |
! | GTAGCTTCAGAGAGCATGGA+AGG | - | chr6_4:69347279-69347298 | Msa0994500:intron | 50.0% |
GAGATCCTAGAAGCTCTACC+CGG | + | chr6_4:69347501-69347520 | None:intergenic | 50.0% | |
ACCTTGAACATGGCACACTG+CGG | + | chr6_4:69347527-69347546 | None:intergenic | 50.0% | |
CAGTGTGCCATGTTCAAGGT+TGG | - | chr6_4:69347527-69347546 | Msa0994500:intron | 50.0% | |
GTAGGCACCCTACTAAGCTA+CGG | - | chr6_4:69347629-69347648 | Msa0994500:intron | 50.0% | |
!!! | GGTTTTGGTTGGGGTATCCT+TGG | - | chr6_4:69347650-69347669 | Msa0994500:intron | 50.0% |
CAGAATAGGCGTAGGTTCCA+AGG | + | chr6_4:69347670-69347689 | None:intergenic | 50.0% | |
!! | ATGGTCTCTGAAGCGGAGAA+AGG | - | chr6_4:69348193-69348212 | Msa0994500:intron | 50.0% |
! | ATGATGGGGGTTGTAATGGC+TGG | - | chr6_4:69348339-69348358 | Msa0994500:intron | 50.0% |
CCACTCTCACCATGATACAG+TGG | + | chr6_4:69348556-69348575 | None:intergenic | 50.0% | |
CCACTGTATCATGGTGAGAG+TGG | - | chr6_4:69348553-69348572 | Msa0994500:intron | 50.0% | |
!! | AGTGTTGGTTCTGTCCAGGG+TGG | - | chr6_4:69345547-69345566 | Msa0994500:intron | 55.0% |
!! | GTGTTGGTTCTGTCCAGGGT+GGG | - | chr6_4:69345548-69345567 | Msa0994500:intron | 55.0% |
CTAGAAGCTCTACCCGGAAC+AGG | + | chr6_4:69347495-69347514 | None:intergenic | 55.0% | |
CTGTTCCGGGTAGAGCTTCT+AGG | - | chr6_4:69347493-69347512 | Msa0994500:intron | 55.0% | |
CCTTGAACATGGCACACTGC+GGG | + | chr6_4:69347526-69347545 | None:intergenic | 55.0% | |
GCAAGCAGTGTAGAGTGCGA+TGG | - | chr6_4:69348643-69348662 | Msa0994500:intron | 55.0% | |
CCCGCAGTGTGCCATGTTCA+AGG | - | chr6_4:69347523-69347542 | Msa0994500:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 69344400 | 69348764 | 69344400 | ID=Msa0994500;Name=Msa0994500 |
chr6_4 | mRNA | 69344400 | 69348764 | 69344400 | ID=Msa0994500-mRNA-1;Parent=Msa0994500;Name=Msa0994500-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.16|0.14|0.71|1|1|7|337|218 |
chr6_4 | exon | 69344400 | 69344979 | 69344400 | ID=Msa0994500-mRNA-1:exon:12775;Parent=Msa0994500-mRNA-1 |
chr6_4 | exon | 69345085 | 69345180 | 69345085 | ID=Msa0994500-mRNA-1:exon:12774;Parent=Msa0994500-mRNA-1 |
chr6_4 | exon | 69345774 | 69345881 | 69345774 | ID=Msa0994500-mRNA-1:exon:12773;Parent=Msa0994500-mRNA-1 |
chr6_4 | exon | 69346060 | 69346119 | 69346060 | ID=Msa0994500-mRNA-1:exon:12772;Parent=Msa0994500-mRNA-1 |
chr6_4 | exon | 69347108 | 69347206 | 69347108 | ID=Msa0994500-mRNA-1:exon:12771;Parent=Msa0994500-mRNA-1 |
chr6_4 | exon | 69348596 | 69348620 | 69348596 | ID=Msa0994500-mRNA-1:exon:12770;Parent=Msa0994500-mRNA-1 |
chr6_4 | exon | 69348739 | 69348764 | 69348739 | ID=Msa0994500-mRNA-1:exon:12769;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69348739 | 69348764 | 69348739 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69348596 | 69348620 | 69348596 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69347108 | 69347206 | 69347108 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69346060 | 69346119 | 69346060 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69345774 | 69345881 | 69345774 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69345085 | 69345180 | 69345085 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | CDS | 69344737 | 69344979 | 69344737 | ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1 |
chr6_4 | three_prime_UTR | 69344400 | 69344736 | 69344400 | ID=Msa0994500-mRNA-1:three_prime_utr;Parent=Msa0994500-mRNA-1 |
Gene Sequence |
Protein sequence |