AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0994500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994500 MtrunA17_Chr1g0203821 92.248 129 10 0 71 199 222 350 4.72e-82 249
Msa0994500 MtrunA17_Chr8g0365301 96.078 51 2 0 165 215 1 51 1.10e-27 99.8
Msa0994500 MtrunA17_Chr4g0047511 94.118 51 3 0 165 215 1 51 4.01e-27 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994500 AT5G52030.1 54.023 174 72 4 35 201 57 229 1.79e-53 172
Msa0994500 AT5G52030.2 54.023 174 72 4 35 201 201 373 1.79e-51 171

Find 50 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGATGTCATTAATTTAA+TGG 0.159794 6_4:-69344781 Msa0994500:CDS
TTTAGTCCTGCCAATAAAAT+TGG 0.191313 6_4:-69347136 Msa0994500:CDS
AGGCTGTGAATAACTGTAAA+AGG 0.213580 6_4:-69344929 Msa0994500:CDS
TTTCTGGCAGTGAAAGAAAA+TGG 0.264695 6_4:-69344556 Msa0994500:three_prime_UTR
TTTCTTTCACTGCCAGAAAT+TGG 0.294832 6_4:+69344560 None:intergenic
GAGTGGAGTAGACCAATTTC+TGG 0.326465 6_4:-69344572 Msa0994500:three_prime_UTR
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 6_4:-69344530 Msa0994500:three_prime_UTR
GAGCATGGAAGGCTTTGAAT+TGG 0.390401 6_4:-69345852 Msa0994500:CDS
TTGAGATTTCGAGACCTTGC+TGG 0.392448 6_4:-69344837 Msa0994500:CDS
TATGCACTATTAGCCGATAC+AGG 0.408888 6_4:-69344864 Msa0994500:CDS
TTAATGGTTCTTTATAGCTT+AGG 0.424486 6_4:-69344765 Msa0994500:CDS
GTATCAGAACTCTTGCTTCA+AGG 0.434040 6_4:-69344706 Msa0994500:three_prime_UTR
AAAAGGGTGGTAGGTGTGAT+TGG 0.444853 6_4:-69344912 Msa0994500:CDS
ATACCACTAATTGACAAAAC+AGG 0.448524 6_4:-69344728 Msa0994500:exon
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 6_4:-69344525 Msa0994500:three_prime_UTR
ATGTATAAGAGGTGGCAATA+AGG 0.459297 6_4:+69345097 None:intergenic
TTTACAGGAGCTCGAATTGA+AGG 0.464027 6_4:-69347191 Msa0994500:intron
ATATATCTAAACTTAATATC+AGG 0.468076 6_4:+69344461 None:intergenic
TTCTGGCAGTGAAAGAAAAT+GGG 0.483622 6_4:-69344555 Msa0994500:three_prime_UTR
GTGGTAGGTGTGATTGGAAA+AGG 0.496641 6_4:-69344906 Msa0994500:CDS
ATGGTCTCTGAAGCGGAGAA+AGG 0.510965 6_4:-69344949 Msa0994500:CDS
CTGTTCTGCAGTATCTTGCA+TGG 0.516086 6_4:-69344968 Msa0994500:intron
CATTATCAGCCACTGTATCA+TGG 0.521613 6_4:-69344598 Msa0994500:three_prime_UTR
AAATCTCAAATTCCCTGTAT+CGG 0.524931 6_4:+69344851 None:intergenic
AGTCCTGCCAATAAAATTGG+AGG 0.527309 6_4:-69347133 Msa0994500:CDS
GTATCTCGTTCATGTATAAG+AGG 0.530170 6_4:+69345086 None:intergenic
TGAGATTTCGAGACCTTGCT+GGG 0.531713 6_4:-69344836 Msa0994500:CDS
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 6_4:-69344526 Msa0994500:three_prime_UTR
GGCTGTGAATAACTGTAAAA+GGG 0.547115 6_4:-69344928 Msa0994500:CDS
GTAGCTTCAGAGAGCATGGA+AGG 0.554057 6_4:-69345863 Msa0994500:intron
GTCCTGCCAATAAAATTGGA+GGG 0.554106 6_4:-69347132 Msa0994500:CDS
ATAAGAGGTGGCAATAAGGA+TGG 0.555215 6_4:+69345101 None:intergenic
CCACTGTATCATGGTGAGAG+TGG 0.556085 6_4:-69344589 Msa0994500:three_prime_UTR
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 6_4:-69344521 Msa0994500:three_prime_UTR
ATTGGAAAAGGCCACATGAA+TGG 0.567386 6_4:-69344894 Msa0994500:CDS
GATTTCTACAAATAAGCTTG+AGG 0.582194 6_4:-69345773 Msa0994500:intron
ATCTTGCATGGTCTCTGAAG+CGG 0.593986 6_4:-69344956 Msa0994500:CDS
TCCTGCCAATAAAATTGGAG+GGG 0.601474 6_4:-69347131 Msa0994500:CDS
AATAACTGTAAAAGGGTGGT+AGG 0.617141 6_4:-69344921 Msa0994500:CDS
CCTGCCAATAAAATTGGAGG+GGG 0.623892 6_4:-69347130 Msa0994500:CDS
ATGCACTATTAGCCGATACA+GGG 0.626021 6_4:-69344863 Msa0994500:CDS
CTGATGAAGATGTTATTCCA+CGG 0.640766 6_4:+69345797 None:intergenic
TTATTGACGATAGTTATCCG+TGG 0.648146 6_4:-69345814 Msa0994500:CDS
TCTCGTTCATGTATAAGAGG+TGG 0.648526 6_4:+69345089 None:intergenic
GCAAGCAGTGTAGAGTGCGA+TGG 0.650454 6_4:-69344499 Msa0994500:three_prime_UTR
TTAGATGCAGCATGTAACTG+AGG 0.670877 6_4:+69346079 None:intergenic
CCACTCTCACCATGATACAG+TGG 0.674658 6_4:+69344589 None:intergenic
CATATATTACACCATTCATG+TGG 0.675235 6_4:+69344883 None:intergenic
TGTGAATAACTGTAAAAGGG+TGG 0.676596 6_4:-69344925 Msa0994500:CDS
TAAGAGATTCAACATTCACA+TGG 0.722671 6_4:-69346059 Msa0994500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTATGTTTATATGTTTTT+GGG - chr6_4:69344707-69344726 Msa0994500:three_prime_UTR 15.0%
!!! AATTTTTCTTTTTGAAAACA+AGG - chr6_4:69344959-69344978 Msa0994500:CDS 15.0%
!!! ATTTTAAATTCTGTATGATA+AGG - chr6_4:69345152-69345171 Msa0994500:CDS 15.0%
!! TTTGAATTGTTAAAATTTGA+TGG - chr6_4:69345506-69345525 Msa0994500:intron 15.0%
!!! CAAGTTTTTGAAAATTAATA+AGG - chr6_4:69346913-69346932 Msa0994500:intron 15.0%
!! TAAGATCATATATAATACTT+CGG + chr6_4:69347231-69347250 None:intergenic 15.0%
!!! TTTACTATTTTTTATGTTAC+AGG - chr6_4:69347425-69347444 Msa0994500:intron 15.0%
!!! ACTAAATATCATTTTAAAAG+GGG + chr6_4:69347472-69347491 None:intergenic 15.0%
!!! GACTAAATATCATTTTAAAA+GGG + chr6_4:69347473-69347492 None:intergenic 15.0%
!!! ATTGTTTTCTTTAAAATTGT+TGG - chr6_4:69348494-69348513 Msa0994500:intron 15.0%
!! ATATATCTAAACTTAATATC+AGG + chr6_4:69348684-69348703 None:intergenic 15.0%
!!! GTTCTATGTTTATATGTTTT+TGG - chr6_4:69344706-69344725 Msa0994500:three_prime_UTR 20.0%
!! ATAGTGTTTGATACAAAATT+TGG - chr6_4:69344802-69344821 Msa0994500:CDS 20.0%
!! TAGTGTTTGATACAAAATTT+GGG - chr6_4:69344803-69344822 Msa0994500:CDS 20.0%
!! ATTTGAATAAGAATGACATT+TGG - chr6_4:69345058-69345077 Msa0994500:intron 20.0%
!! TGAGAATAAAGTTATAATGA+TGG - chr6_4:69345366-69345385 Msa0994500:intron 20.0%
!! TACAAATGAATAAACTTGTA+TGG + chr6_4:69345442-69345461 None:intergenic 20.0%
!! AAAGTAATGTTGTTAAATCA+TGG + chr6_4:69345816-69345835 None:intergenic 20.0%
!!! AATGAATTTTTCCAAATTCA+TGG - chr6_4:69346362-69346381 Msa0994500:intron 20.0%
!! TGCATTTATGAATATACTTT+GGG - chr6_4:69346680-69346699 Msa0994500:intron 20.0%
!!! TTAGTGAAATTTTGAAACAA+TGG - chr6_4:69347167-69347186 Msa0994500:CDS 20.0%
!!! TAGTGAAATTTTGAAACAAT+GGG - chr6_4:69347168-69347187 Msa0994500:CDS 20.0%
!!! GAAGTATTATATATGATCTT+AGG - chr6_4:69347230-69347249 Msa0994500:intron 20.0%
!!! GGACTAAATATCATTTTAAA+AGG + chr6_4:69347474-69347493 None:intergenic 20.0%
!!! ATTAATAAAGTACTCAGAAT+AGG + chr6_4:69347684-69347703 None:intergenic 20.0%
!! ATTCTGAGTACTTTATTAAT+TGG - chr6_4:69347684-69347703 Msa0994500:intron 20.0%
!! TTCTGAGTACTTTATTAATT+GGG - chr6_4:69347685-69347704 Msa0994500:intron 20.0%
!! ATATATAAAACTCTCAACTA+AGG - chr6_4:69347859-69347878 Msa0994500:intron 20.0%
!! GATTGATGTCATTAATTTAA+TGG - chr6_4:69348361-69348380 Msa0994500:intron 20.0%
!! TTTGTTCAGGTTTATTTAGA+AGG - chr6_4:69344417-69344436 Msa0994500:three_prime_UTR 25.0%
!!! TGGTTTTGATTTTCTTTTTC+AGG - chr6_4:69344547-69344566 Msa0994500:three_prime_UTR 25.0%
!! AAGTAAGTGTTTGAGATAAT+TGG - chr6_4:69344829-69344848 Msa0994500:CDS 25.0%
!! GAGATTTTTGCTAAATTCTT+TGG - chr6_4:69344981-69345000 Msa0994500:intron 25.0%
!!! TGCTAAATTCTTTGGAATAT+TGG - chr6_4:69344989-69345008 Msa0994500:intron 25.0%
!! AATATTGGACTGATTTCATT+AGG - chr6_4:69345004-69345023 Msa0994500:intron 25.0%
!! AAAAGTTTTCATACACTGAT+TGG - chr6_4:69345088-69345107 Msa0994500:CDS 25.0%
! GATTCTAAATGTTGTATCTA+AGG - chr6_4:69345174-69345193 Msa0994500:intron 25.0%
!! TAGACTTTTGATGAAGAATT+TGG - chr6_4:69345212-69345231 Msa0994500:intron 25.0%
!!! AATTTTAAGTTCTTGTGGTT+TGG - chr6_4:69345315-69345334 Msa0994500:intron 25.0%
! TAGAATTGTGATGTAGAATT+TGG - chr6_4:69345582-69345601 Msa0994500:intron 25.0%
! AAGCTTCATTTAGAGAATTA+AGG - chr6_4:69345633-69345652 Msa0994500:intron 25.0%
! AGCTTCATTTAGAGAATTAA+GGG - chr6_4:69345634-69345653 Msa0994500:intron 25.0%
!!! GCTGATATATGAGATTTTTT+GGG + chr6_4:69345725-69345744 None:intergenic 25.0%
!!! AGCTGATATATGAGATTTTT+TGG + chr6_4:69345726-69345745 None:intergenic 25.0%
! CCACATAAATAAAAGGATTT+AGG + chr6_4:69345861-69345880 None:intergenic 25.0%
!!! CCTAAATCCTTTTATTTATG+TGG - chr6_4:69345858-69345877 Msa0994500:CDS 25.0%
!!! ATCCTTTTATTTATGTGGAA+AGG - chr6_4:69345863-69345882 Msa0994500:intron 25.0%
! TCATACTAAACGATAAGAAA+AGG + chr6_4:69346097-69346116 None:intergenic 25.0%
!! GAAAATTTGGTTAAGTTGTA+TGG - chr6_4:69346259-69346278 Msa0994500:intron 25.0%
! GTGCATTTATGAATATACTT+TGG - chr6_4:69346679-69346698 Msa0994500:intron 25.0%
!! GAAGTATTATGTATGTTCTT+TGG - chr6_4:69347199-69347218 Msa0994500:intron 25.0%
! TATATATGATCTTAGGATGA+TGG - chr6_4:69347237-69347256 Msa0994500:intron 25.0%
! AAAATTGAGATTGACATTCT+AGG + chr6_4:69347407-69347426 None:intergenic 25.0%
! AAGATTTCACTATAACTGAA+TGG + chr6_4:69347767-69347786 None:intergenic 25.0%
!! TATAGTGAAATCTTTTACGA+TGG - chr6_4:69347773-69347792 Msa0994500:intron 25.0%
! TTAATGGTTCTTTATAGCTT+AGG - chr6_4:69348377-69348396 Msa0994500:intron 25.0%
! TGGTTTTCATCTTTTTGTTC+AGG - chr6_4:69344404-69344423 Msa0994500:three_prime_UTR 30.0%
CAAACCTAGAACAAAAACAA+AGG + chr6_4:69344529-69344548 None:intergenic 30.0%
!!! CTTTGTTTTTGTTCTAGGTT+TGG - chr6_4:69344527-69344546 Msa0994500:three_prime_UTR 30.0%
!!! TTTGTTGTTGTTTTGTGCTT+TGG - chr6_4:69344679-69344698 Msa0994500:three_prime_UTR 30.0%
!! ATCACAAACACTGATTCAAA+TGG + chr6_4:69344913-69344932 None:intergenic 30.0%
! GAAGAATTTGGAACCAATAT+TGG - chr6_4:69345224-69345243 Msa0994500:intron 30.0%
! TAGTCTTGGTTTAACTTTGT+TGG - chr6_4:69345255-69345274 Msa0994500:intron 30.0%
ATTGTCATCTTGAAATTTGC+TGG - chr6_4:69345291-69345310 Msa0994500:intron 30.0%
!!! CTGGAAATTTTAAGTTCTTG+TGG - chr6_4:69345310-69345329 Msa0994500:intron 30.0%
ATAAAACCAAAGTAGTCCAA+TGG + chr6_4:69345474-69345493 None:intergenic 30.0%
!! AAAATTTGCTGGTATAGTGT+TGG - chr6_4:69345532-69345551 Msa0994500:intron 30.0%
TTGTGATGTAGAATTTGGAA+TGG - chr6_4:69345587-69345606 Msa0994500:intron 30.0%
! TAGAATTTGGAATGGAATGA+TGG - chr6_4:69345595-69345614 Msa0994500:intron 30.0%
TCATTTAGAGAATTAAGGGT+TGG - chr6_4:69345638-69345657 Msa0994500:intron 30.0%
CATTTAGAGAATTAAGGGTT+GGG - chr6_4:69345639-69345658 Msa0994500:intron 30.0%
AAAATCTCATATATCAGCTC+TGG - chr6_4:69345727-69345746 Msa0994500:intron 30.0%
CTCCTTTCCACATAAATAAA+AGG + chr6_4:69345868-69345887 None:intergenic 30.0%
TTATTTATGTGGAAAGGAGA+TGG - chr6_4:69345869-69345888 Msa0994500:intron 30.0%
TTTAGTCCTGCCAATAAAAT+TGG - chr6_4:69346006-69346025 Msa0994500:intron 30.0%
ACCTTAATTGTATTACGATG+TGG - chr6_4:69346118-69346137 Msa0994500:intron 30.0%
TCCACATCGTAATACAATTA+AGG + chr6_4:69346122-69346141 None:intergenic 30.0%
TGAAGTAGAGCATGAAAATT+TGG - chr6_4:69346246-69346265 Msa0994500:intron 30.0%
! CAATAAAGCATCCATGAATT+TGG + chr6_4:69346376-69346395 None:intergenic 30.0%
ACAGTAGTATCTACTTTGAT+TGG - chr6_4:69346455-69346474 Msa0994500:intron 30.0%
GAAAATGCAGAGAAATTTCA+TGG + chr6_4:69346711-69346730 None:intergenic 30.0%
AAAAACTTGTGATCTGACTT+TGG + chr6_4:69346902-69346921 None:intergenic 30.0%
! CAAATGATAATGAACGTGTT+AGG + chr6_4:69347022-69347041 None:intergenic 30.0%
ACACGTTCATTATCATTTGT+AGG - chr6_4:69347023-69347042 Msa0994500:intron 30.0%
TAAGAGATTCAACATTCACA+TGG - chr6_4:69347083-69347102 Msa0994500:intron 30.0%
ATTCACATGGTAGTATTCTA+TGG - chr6_4:69347096-69347115 Msa0994500:intron 30.0%
!!! TATGGTCTCGATATTTTTTG+TGG - chr6_4:69347114-69347133 Msa0994500:CDS 30.0%
!!! ATGGTCTCGATATTTTTTGT+GGG - chr6_4:69347115-69347134 Msa0994500:CDS 30.0%
!!! ATATTTTTTGTGGGGGAATA+AGG - chr6_4:69347124-69347143 Msa0994500:CDS 30.0%
!!! TATTTTTTGTGGGGGAATAA+GGG - chr6_4:69347125-69347144 Msa0994500:CDS 30.0%
GATTTCTACAAATAAGCTTG+AGG - chr6_4:69347369-69347388 Msa0994500:intron 30.0%
AATGATATTTAGTCCTGTTC+CGG - chr6_4:69347479-69347498 Msa0994500:intron 30.0%
! TTGTGTTTAGGTTAAATGAG+AGG - chr6_4:69347554-69347573 Msa0994500:intron 30.0%
AGCAGAAATCTTAGCTAAAT+GGG + chr6_4:69347607-69347626 None:intergenic 30.0%
ACAACTTATTTCAATACCCT+TGG + chr6_4:69347731-69347750 None:intergenic 30.0%
TTTCACTATAACTGAATGGT+TGG + chr6_4:69347763-69347782 None:intergenic 30.0%
AAAACTAAAGAGCCAAATCT+TGG - chr6_4:69347949-69347968 Msa0994500:intron 30.0%
CATATATTACACCATTCATG+TGG + chr6_4:69348262-69348281 None:intergenic 30.0%
AAATCTCAAATTCCCTGTAT+CGG + chr6_4:69348294-69348313 None:intergenic 30.0%
CTGGGAAAAATTCAAATGAT+GGG - chr6_4:69348324-69348343 Msa0994500:intron 30.0%
TGGGAAAAATTCAAATGATG+GGG - chr6_4:69348325-69348344 Msa0994500:intron 30.0%
ATACCACTAATTGACAAAAC+AGG - chr6_4:69348414-69348433 Msa0994500:intron 30.0%
! ATACCTGTTTTGTCAATTAG+TGG + chr6_4:69348420-69348439 None:intergenic 30.0%
! ATTTAGAAGGTAGCAGCTTT+TGG - chr6_4:69344430-69344449 Msa0994500:three_prime_UTR 35.0%
ACTCAAACCTTAAAACAGCA+AGG + chr6_4:69344463-69344482 None:intergenic 35.0%
!!! GTGTCCTTTGTTTTTGTTCT+AGG - chr6_4:69344522-69344541 Msa0994500:three_prime_UTR 35.0%
! GACTGATTTCATTAGGTGTA+GGG - chr6_4:69345011-69345030 Msa0994500:intron 35.0%
! GTATCTAAGGTGTGAAAATC+TGG - chr6_4:69345187-69345206 Msa0994500:intron 35.0%
! TTTGGAACCAATATTGGAAC+TGG - chr6_4:69345230-69345249 Msa0994500:intron 35.0%
GACTATACCAGTTCCAATAT+TGG + chr6_4:69345240-69345259 None:intergenic 35.0%
TATTGGAACTGGTATAGTCT+TGG - chr6_4:69345241-69345260 Msa0994500:intron 35.0%
ATTTGTAGTCTATGAGCCAT+TGG - chr6_4:69345455-69345474 Msa0994500:intron 35.0%
! TTTGATGGCTGAAAATTTGC+TGG - chr6_4:69345521-69345540 Msa0994500:intron 35.0%
! CTTGGTTACAGTTCCAATTT+TGG + chr6_4:69345671-69345690 None:intergenic 35.0%
AAATTGGAACTGTAACCAAG+TGG - chr6_4:69345671-69345690 Msa0994500:intron 35.0%
ATATCTATCCCTGTCTTTAC+AGG - chr6_4:69345936-69345955 Msa0994500:intron 35.0%
TATTACGATGTGGATGACTA+GGG - chr6_4:69346128-69346147 Msa0994500:intron 35.0%
TTTCAGCTGAATCAAGACAA+GGG - chr6_4:69346188-69346207 Msa0994500:intron 35.0%
GTTGTGTTGAAAGAAATAGC+AGG - chr6_4:69346284-69346303 Msa0994500:intron 35.0%
GTGAAAGGCTATTATTCTCA+AGG + chr6_4:69346327-69346346 None:intergenic 35.0%
TACCTAGAAGAGTTTGTGAA+AGG + chr6_4:69346342-69346361 None:intergenic 35.0%
! GATTTTTCCTCCTCTTTAGT+TGG - chr6_4:69346427-69346446 Msa0994500:intron 35.0%
TCTTTGTCAAGGAGAATGAT+AGG + chr6_4:69346550-69346569 None:intergenic 35.0%
AGACCAAAATCCGAAATCTT+CGG + chr6_4:69346580-69346599 None:intergenic 35.0%
ACAAAATCTGATTGAAGCGT+TGG + chr6_4:69346650-69346669 None:intergenic 35.0%
CACTAGATTTGCATCTTTCT+TGG - chr6_4:69346953-69346972 Msa0994500:intron 35.0%
CGTTCATTATCATTTGTAGG+CGG - chr6_4:69347026-69347045 Msa0994500:intron 35.0%
!!! TGGTCTCGATATTTTTTGTG+GGG - chr6_4:69347116-69347135 Msa0994500:CDS 35.0%
TTATTGACGATAGTTATCCG+TGG - chr6_4:69347328-69347347 Msa0994500:intron 35.0%
CTGATGAAGATGTTATTCCA+CGG + chr6_4:69347348-69347367 None:intergenic 35.0%
ATGATATTTAGTCCTGTTCC+GGG - chr6_4:69347480-69347499 Msa0994500:intron 35.0%
!!! AAGGTTGGTGTTTTGTGTTT+AGG - chr6_4:69347542-69347561 Msa0994500:intron 35.0%
TTAGGTTAAATGAGAGGCTT+AGG - chr6_4:69347560-69347579 Msa0994500:intron 35.0%
GCAGAAATCTTAGCTAAATG+GGG + chr6_4:69347606-69347625 None:intergenic 35.0%
GAGCAGAAATCTTAGCTAAA+TGG + chr6_4:69347608-69347627 None:intergenic 35.0%
! GAAATCTTTTACGATGGTTC+AGG - chr6_4:69347779-69347798 Msa0994500:intron 35.0%
CTGCAACTAATACCAAGATT+TGG + chr6_4:69347964-69347983 None:intergenic 35.0%
ATGTATAAGAGGTGGCAATA+AGG + chr6_4:69348048-69348067 None:intergenic 35.0%
GTATCTCGTTCATGTATAAG+AGG + chr6_4:69348059-69348078 None:intergenic 35.0%
! CCATTGTTTACTTGAGTTGT+AGG + chr6_4:69348144-69348163 None:intergenic 35.0%
CCTACAACTCAAGTAAACAA+TGG - chr6_4:69348141-69348160 Msa0994500:intron 35.0%
AGGCTGTGAATAACTGTAAA+AGG - chr6_4:69348213-69348232 Msa0994500:intron 35.0%
GGCTGTGAATAACTGTAAAA+GGG - chr6_4:69348214-69348233 Msa0994500:intron 35.0%
TGTGAATAACTGTAAAAGGG+TGG - chr6_4:69348217-69348236 Msa0994500:intron 35.0%
AATAACTGTAAAAGGGTGGT+AGG - chr6_4:69348221-69348240 Msa0994500:intron 35.0%
! CATTTGAATTTTTCCCAGCA+AGG + chr6_4:69348322-69348341 None:intergenic 35.0%
GCTGGGAAAAATTCAAATGA+TGG - chr6_4:69348323-69348342 Msa0994500:intron 35.0%
GGGAAAAATTCAAATGATGG+GGG - chr6_4:69348326-69348345 Msa0994500:intron 35.0%
TTTCTTTCACTGCCAGAAAT+TGG + chr6_4:69348585-69348604 None:intergenic 35.0%
! TTTCTGGCAGTGAAAGAAAA+TGG - chr6_4:69348586-69348605 Msa0994500:intron 35.0%
TTCTGGCAGTGAAAGAAAAT+GGG - chr6_4:69348587-69348606 Msa0994500:intron 35.0%
CAAATAGCTGAGAAGTTAGA+AGG - chr6_4:69348612-69348631 Msa0994500:intron 35.0%
ACCTTAAAACAGCAAGGAAC+CGG + chr6_4:69344457-69344476 None:intergenic 40.0%
! GGACTGATTTCATTAGGTGT+AGG - chr6_4:69345010-69345029 Msa0994500:intron 40.0%
TATGAGCCATTGGACTACTT+TGG - chr6_4:69345465-69345484 Msa0994500:intron 40.0%
!! TATAGTGTTGGTTCTGTCCA+GGG - chr6_4:69345544-69345563 Msa0994500:intron 40.0%
TATACCAAATTATCCCACCC+TGG + chr6_4:69345564-69345583 None:intergenic 40.0%
GGTTGGGTTTGAACCAAAAT+TGG - chr6_4:69345655-69345674 Msa0994500:intron 40.0%
TTCATTAATAGCCTGCCACT+TGG + chr6_4:69345689-69345708 None:intergenic 40.0%
TTTACAGGAGCTCGAATTGA+AGG - chr6_4:69345951-69345970 Msa0994500:intron 40.0%
AGTCCTGCCAATAAAATTGG+AGG - chr6_4:69346009-69346028 Msa0994500:intron 40.0%
GTCCTGCCAATAAAATTGGA+GGG - chr6_4:69346010-69346029 Msa0994500:intron 40.0%
TCCTGCCAATAAAATTGGAG+GGG - chr6_4:69346011-69346030 Msa0994500:intron 40.0%
!!! TGGTTTTGGTTCTGTCTACA+TGG - chr6_4:69346035-69346054 Msa0994500:intron 40.0%
GGAACGAAAAAACAACGATC+AGG + chr6_4:69346076-69346095 None:intergenic 40.0%
GTATTACGATGTGGATGACT+AGG - chr6_4:69346127-69346146 Msa0994500:intron 40.0%
CTTTCAGCTGAATCAAGACA+AGG - chr6_4:69346187-69346206 Msa0994500:intron 40.0%
TTCAGCTGAATCAAGACAAG+GGG - chr6_4:69346189-69346208 Msa0994500:intron 40.0%
AGCCTTTCACAAACTCTTCT+AGG - chr6_4:69346337-69346356 Msa0994500:intron 40.0%
! TTTTCCTCCTCTTTAGTTGG+AGG - chr6_4:69346430-69346449 Msa0994500:intron 40.0%
! ATATGTGTTGACATTGCACG+CGG - chr6_4:69346493-69346512 Msa0994500:intron 40.0%
TTGTCAAGGAGAATGATAGG+AGG + chr6_4:69346547-69346566 None:intergenic 40.0%
AGACCTTACACCGAAGATTT+CGG - chr6_4:69346567-69346586 Msa0994500:intron 40.0%
! AATCCGAAATCTTCGGTGTA+AGG + chr6_4:69346573-69346592 None:intergenic 40.0%
! ACACCGAAGATTTCGGATTT+TGG - chr6_4:69346574-69346593 Msa0994500:intron 40.0%
GTGTAGTAGCCGAAAAATCT+TGG - chr6_4:69346783-69346802 Msa0994500:intron 40.0%
! CGTTGCTAGCCAAGATTTTT+CGG + chr6_4:69346795-69346814 None:intergenic 40.0%
TTAGATGCAGCATGTAACTG+AGG + chr6_4:69347066-69347085 None:intergenic 40.0%
!!! GGTCTCGATATTTTTTGTGG+GGG - chr6_4:69347117-69347136 Msa0994500:CDS 40.0%
! TTTTGTAGCTTCAGAGAGCA+TGG - chr6_4:69347275-69347294 Msa0994500:intron 40.0%
GGGATCAAGCATATAAAAGC+AGG + chr6_4:69347452-69347471 None:intergenic 40.0%
CAAAACACCAACCTTGAACA+TGG + chr6_4:69347537-69347556 None:intergenic 40.0%
AGCTAAGATTTCTGCTCTGT+AGG - chr6_4:69347611-69347630 Msa0994500:intron 40.0%
ACCAAAACCGTAGCTTAGTA+GGG + chr6_4:69347639-69347658 None:intergenic 40.0%
AACCAAAACCGTAGCTTAGT+AGG + chr6_4:69347640-69347659 None:intergenic 40.0%
!! TACTAAGCTACGGTTTTGGT+TGG - chr6_4:69347639-69347658 Msa0994500:intron 40.0%
!!! ACTAAGCTACGGTTTTGGTT+GGG - chr6_4:69347640-69347659 Msa0994500:intron 40.0%
! AAAGTACTCAGAATAGGCGT+AGG + chr6_4:69347678-69347697 None:intergenic 40.0%
ATTAAACAGTTCGCAGACCA+AGG - chr6_4:69347711-69347730 Msa0994500:intron 40.0%
TTAAACAGTTCGCAGACCAA+GGG - chr6_4:69347712-69347731 Msa0994500:intron 40.0%
GAAAAACTGAGCTGCTCATA+AGG + chr6_4:69348017-69348036 None:intergenic 40.0%
ATAAGAGGTGGCAATAAGGA+TGG + chr6_4:69348044-69348063 None:intergenic 40.0%
TCTCGTTCATGTATAAGAGG+TGG + chr6_4:69348056-69348075 None:intergenic 40.0%
!!! CGATGCAATTTTTGAGTGAG+AGG + chr6_4:69348096-69348115 None:intergenic 40.0%
TAGGACTTGTCACATGCAAA+AGG + chr6_4:69348125-69348144 None:intergenic 40.0%
ATTGGAAAAGGCCACATGAA+TGG - chr6_4:69348248-69348267 Msa0994500:intron 40.0%
TATGCACTATTAGCCGATAC+AGG - chr6_4:69348278-69348297 Msa0994500:intron 40.0%
ATGCACTATTAGCCGATACA+GGG - chr6_4:69348279-69348298 Msa0994500:intron 40.0%
! TCAAATGATGGGGGTTGTAA+TGG - chr6_4:69348335-69348354 Msa0994500:intron 40.0%
GTATCAGAACTCTTGCTTCA+AGG - chr6_4:69348436-69348455 Msa0994500:intron 40.0%
CATTATCAGCCACTGTATCA+TGG - chr6_4:69348544-69348563 Msa0994500:intron 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG - chr6_4:69348616-69348635 Msa0994500:intron 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG - chr6_4:69348617-69348636 Msa0994500:intron 40.0%
!!! TCCGGTTCCTTGCTGTTTTA+AGG - chr6_4:69344453-69344472 Msa0994500:three_prime_UTR 45.0%
GGGTCTGTGTTTGACACAAT+TGG - chr6_4:69344727-69344746 Msa0994500:exon 45.0%
AGGTGTAGGGCTCATAGATA+TGG - chr6_4:69345024-69345043 Msa0994500:intron 45.0%
!! GTATAGTGTTGGTTCTGTCC+AGG - chr6_4:69345543-69345562 Msa0994500:intron 45.0%
AGAACTTTGCAGCTGCAGTT+TGG - chr6_4:69345906-69345925 Msa0994500:intron 45.0%
TTCGAGCTCCTGTAAAGACA+GGG + chr6_4:69345947-69345966 None:intergenic 45.0%
ATTCGAGCTCCTGTAAAGAC+AGG + chr6_4:69345948-69345967 None:intergenic 45.0%
CCTGCCAATAAAATTGGAGG+GGG - chr6_4:69346012-69346031 Msa0994500:intron 45.0%
! ACCACCCCCTCCAATTTTAT+TGG + chr6_4:69346019-69346038 None:intergenic 45.0%
! AAAATTGGAGGGGGTGGTTT+TGG - chr6_4:69346021-69346040 Msa0994500:intron 45.0%
GACTAGGGACGACTGAAAAA+TGG - chr6_4:69346143-69346162 Msa0994500:intron 45.0%
AGGGGTGAAAGAGTTCTTGA+CGG - chr6_4:69346207-69346226 Msa0994500:intron 45.0%
ACTGTGACCTCCAACTAAAG+AGG + chr6_4:69346440-69346459 None:intergenic 45.0%
! TATGTGTTGACATTGCACGC+GGG - chr6_4:69346494-69346513 Msa0994500:intron 45.0%
CCTGACTTCTTCGTGCAAAA+AGG + chr6_4:69346524-69346543 None:intergenic 45.0%
! CCTTTTTGCACGAAGAAGTC+AGG - chr6_4:69346521-69346540 Msa0994500:intron 45.0%
TCGGTGTAAGGTCTTTGTCA+AGG + chr6_4:69346561-69346580 None:intergenic 45.0%
CAACGTCAGTCTTTCATGTC+TGG - chr6_4:69346810-69346829 Msa0994500:intron 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG - chr6_4:69347290-69347309 Msa0994500:intron 45.0%
! ACCCTACTAAGCTACGGTTT+TGG - chr6_4:69347635-69347654 Msa0994500:intron 45.0%
!!! CTAAGCTACGGTTTTGGTTG+GGG - chr6_4:69347641-69347660 Msa0994500:intron 45.0%
CTGTTCTGCAGTATCTTGCA+TGG - chr6_4:69348174-69348193 Msa0994500:intron 45.0%
! ATCTTGCATGGTCTCTGAAG+CGG - chr6_4:69348186-69348205 Msa0994500:intron 45.0%
AAAAGGGTGGTAGGTGTGAT+TGG - chr6_4:69348230-69348249 Msa0994500:intron 45.0%
GTGGTAGGTGTGATTGGAAA+AGG - chr6_4:69348236-69348255 Msa0994500:intron 45.0%
TTGAGATTTCGAGACCTTGC+TGG - chr6_4:69348305-69348324 Msa0994500:intron 45.0%
TGAGATTTCGAGACCTTGCT+GGG - chr6_4:69348306-69348325 Msa0994500:intron 45.0%
GAGTGGAGTAGACCAATTTC+TGG - chr6_4:69348570-69348589 Msa0994500:intron 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG - chr6_4:69348621-69348640 Msa0994500:intron 45.0%
!! ATTATATGAAATAAAAAAAT+TGG + chr6_4:69348710-69348729 None:intergenic 5.0%
! GAAGGTAGCAGCTTTTGGTC+CGG - chr6_4:69344435-69344454 Msa0994500:three_prime_UTR 50.0%
CTGTCCAGGGTGGGATAATT+TGG - chr6_4:69345557-69345576 Msa0994500:intron 50.0%
TGGAACTGTAACCAAGTGGC+AGG - chr6_4:69345675-69345694 Msa0994500:intron 50.0%
! CCCCCTCCAATTTTATTGGC+AGG + chr6_4:69346015-69346034 None:intergenic 50.0%
GCCAATAAAATTGGAGGGGG+TGG - chr6_4:69346015-69346034 Msa0994500:intron 50.0%
GTGACCTCCAACTAAAGAGG+AGG + chr6_4:69346437-69346456 None:intergenic 50.0%
! GTAGCTTCAGAGAGCATGGA+AGG - chr6_4:69347279-69347298 Msa0994500:intron 50.0%
GAGATCCTAGAAGCTCTACC+CGG + chr6_4:69347501-69347520 None:intergenic 50.0%
ACCTTGAACATGGCACACTG+CGG + chr6_4:69347527-69347546 None:intergenic 50.0%
CAGTGTGCCATGTTCAAGGT+TGG - chr6_4:69347527-69347546 Msa0994500:intron 50.0%
GTAGGCACCCTACTAAGCTA+CGG - chr6_4:69347629-69347648 Msa0994500:intron 50.0%
!!! GGTTTTGGTTGGGGTATCCT+TGG - chr6_4:69347650-69347669 Msa0994500:intron 50.0%
CAGAATAGGCGTAGGTTCCA+AGG + chr6_4:69347670-69347689 None:intergenic 50.0%
!! ATGGTCTCTGAAGCGGAGAA+AGG - chr6_4:69348193-69348212 Msa0994500:intron 50.0%
! ATGATGGGGGTTGTAATGGC+TGG - chr6_4:69348339-69348358 Msa0994500:intron 50.0%
CCACTCTCACCATGATACAG+TGG + chr6_4:69348556-69348575 None:intergenic 50.0%
CCACTGTATCATGGTGAGAG+TGG - chr6_4:69348553-69348572 Msa0994500:intron 50.0%
!! AGTGTTGGTTCTGTCCAGGG+TGG - chr6_4:69345547-69345566 Msa0994500:intron 55.0%
!! GTGTTGGTTCTGTCCAGGGT+GGG - chr6_4:69345548-69345567 Msa0994500:intron 55.0%
CTAGAAGCTCTACCCGGAAC+AGG + chr6_4:69347495-69347514 None:intergenic 55.0%
CTGTTCCGGGTAGAGCTTCT+AGG - chr6_4:69347493-69347512 Msa0994500:intron 55.0%
CCTTGAACATGGCACACTGC+GGG + chr6_4:69347526-69347545 None:intergenic 55.0%
GCAAGCAGTGTAGAGTGCGA+TGG - chr6_4:69348643-69348662 Msa0994500:intron 55.0%
CCCGCAGTGTGCCATGTTCA+AGG - chr6_4:69347523-69347542 Msa0994500:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 69344400 69348764 69344400 ID=Msa0994500;Name=Msa0994500
chr6_4 mRNA 69344400 69348764 69344400 ID=Msa0994500-mRNA-1;Parent=Msa0994500;Name=Msa0994500-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.16|0.14|0.71|1|1|7|337|218
chr6_4 exon 69344400 69344979 69344400 ID=Msa0994500-mRNA-1:exon:12775;Parent=Msa0994500-mRNA-1
chr6_4 exon 69345085 69345180 69345085 ID=Msa0994500-mRNA-1:exon:12774;Parent=Msa0994500-mRNA-1
chr6_4 exon 69345774 69345881 69345774 ID=Msa0994500-mRNA-1:exon:12773;Parent=Msa0994500-mRNA-1
chr6_4 exon 69346060 69346119 69346060 ID=Msa0994500-mRNA-1:exon:12772;Parent=Msa0994500-mRNA-1
chr6_4 exon 69347108 69347206 69347108 ID=Msa0994500-mRNA-1:exon:12771;Parent=Msa0994500-mRNA-1
chr6_4 exon 69348596 69348620 69348596 ID=Msa0994500-mRNA-1:exon:12770;Parent=Msa0994500-mRNA-1
chr6_4 exon 69348739 69348764 69348739 ID=Msa0994500-mRNA-1:exon:12769;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69348739 69348764 69348739 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69348596 69348620 69348596 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69347108 69347206 69347108 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69346060 69346119 69346060 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69345774 69345881 69345774 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69345085 69345180 69345085 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 CDS 69344737 69344979 69344737 ID=Msa0994500-mRNA-1:cds;Parent=Msa0994500-mRNA-1
chr6_4 three_prime_UTR 69344400 69344736 69344400 ID=Msa0994500-mRNA-1:three_prime_utr;Parent=Msa0994500-mRNA-1
Gene Sequence

>Msa0994500

ATGTTGGTTTTCATCTTTTTGTTCAGGTTTGGTTTTGATTTTCTTTTTCAGGAGCTCGAATTGAAGGAGAAGAAAGAACTAAGTAATGCGACTGATAACTTTAGTCCTGCCAATAAAATTGGAGGGGGTGGTTTTGGTTCTGTCTACATGGCGGATATATTTTTAGCACCTCAGTTACATGCTGCATCTAAGAGATTCAACATTCACATGCTTCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAACTTGAGTTTATTGACGATAGTTATCCGTGGAATAACATCTTCATCAGAGATTTCTACAAATAAGCTTGAGAAAGCAAGTTCAGATGATGCTACACTTCAGCCTTATGAGCAGCTCAGTTTTTCATATCCATCCTTATTGCCACCTCTTATACATGAACGAGATACTTATCTTGCATGGTCTCTGAAGCGGAGAAAGGCTGTGAATAACTGTAAAAGGGTGGTAGGTGTGATTGGAAAAGGCCACATGAATGGTGTAATATATGCACTATTAGCCGATACAGGGAATTTGAGATTTCGAGACCTTGCTGGGAAAAATTCAAATGATGGGGGTTGTAATGGCTGGATTGATGTCATTAATTTAATGGTTCTTTATAGCTTAGGCAATTTGAGTCTCTATACCACTAATTGA

Protein sequence

>Msa0994500

MLVFIFLFRFGFDFLFQELELKEKKELSNATDNFSPANKIGGGGFGSVYMADIFLAPQLHAASKRFNIHMLQRAWKALNWTQNLSLLTIVIRGITSSSEISTNKLEKASSDDATLQPYEQLSFSYPSLLPPLIHERDTYLAWSLKRRKAVNNCKRVVGVIGKGHMNGVIYALLADTGNLRFRDLAGKNSNDGGCNGWIDVINLMVLYSLGNLSLYTTN*