Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895960 | KEH26803.1 | 86.538 | 260 | 21 | 2 | 5 | 250 | 721 | 980 | 1.34e-139 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895960 | sp|Q09690|POM1_SCHPO | 39.048 | 105 | 60 | 3 | 149 | 251 | 679 | 781 | 3.00e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895960 | A0A072UCM1 | 86.538 | 260 | 21 | 2 | 5 | 250 | 721 | 980 | 6.40e-140 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0895960 | Msa1418110 | 0.882049 | 1.443035e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895960 | MtrunA17_Chr6g0480541 | 89.200 | 250 | 13 | 2 | 5 | 240 | 721 | 970 | 1.05e-142 | 430 |
| Msa0895960 | MtrunA17_Chr6g0480491 | 96.947 | 131 | 4 | 0 | 7 | 137 | 32 | 162 | 8.03e-89 | 261 |
| Msa0895960 | MtrunA17_Chr6g0480481 | 89.423 | 104 | 11 | 0 | 147 | 250 | 13 | 116 | 2.09e-62 | 195 |
| Msa0895960 | MtrunA17_Chr5g0437131 | 54.717 | 159 | 64 | 2 | 91 | 244 | 324 | 479 | 4.42e-47 | 167 |
| Msa0895960 | MtrunA17_Chr8g0369241 | 39.506 | 81 | 48 | 1 | 167 | 246 | 138 | 218 | 8.33e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895960 | AT1G73450.1 | 56.746 | 252 | 87 | 5 | 6 | 240 | 667 | 913 | 1.13e-71 | 238 |
| Msa0895960 | AT1G73460.2 | 56.349 | 252 | 91 | 5 | 6 | 240 | 681 | 930 | 4.14e-68 | 228 |
| Msa0895960 | AT1G73460.1 | 56.349 | 252 | 91 | 5 | 6 | 240 | 681 | 930 | 4.14e-68 | 228 |
| Msa0895960 | AT3G17750.1 | 53.175 | 252 | 97 | 6 | 6 | 240 | 652 | 899 | 6.37e-64 | 216 |
| Msa0895960 | AT2G40120.1 | 47.642 | 212 | 94 | 5 | 50 | 244 | 126 | 337 | 5.99e-48 | 167 |
Find 41 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTACTGTTGATAATTA+TGG | 0.117749 | 6_1:-85051248 | Msa0895960:CDS |
| ATTTAACCATGGCAACTTAC+TGG | 0.230968 | 6_1:+85051427 | None:intergenic |
| CTATCATGTCACGGAGTATC+TGG | 0.264842 | 6_1:-85050392 | Msa0895960:CDS |
| TAAAGATAGCCAGATGATTC+AGG | 0.272060 | 6_1:-85051459 | Msa0895960:CDS |
| ATTACATGGGAAGATGATTT+AGG | 0.286175 | 6_1:-85051173 | Msa0895960:CDS |
| CTTCACCCGAGAAAAGTTCT+AGG | 0.316441 | 6_1:-85051313 | Msa0895960:CDS |
| CAACTACTGTTGATAATTAT+GGG | 0.381112 | 6_1:-85051247 | Msa0895960:CDS |
| CATTAGATACTGTCCTTCCT+AGG | 0.462058 | 6_1:-85050102 | Msa0895960:CDS |
| ATGAAGAAGTTGACATTACA+TGG | 0.483552 | 6_1:-85051187 | Msa0895960:CDS |
| AACCACCACCCTGAATCATC+TGG | 0.494607 | 6_1:+85051450 | None:intergenic |
| TATGTCAATAAGCATGATCC+TGG | 0.504155 | 6_1:-85050241 | Msa0895960:CDS |
| CCATAATTATCAACAGTAGT+TGG | 0.505346 | 6_1:+85051248 | None:intergenic |
| AATGTTAAAATTGCCTAGGA+AGG | 0.513726 | 6_1:+85050089 | None:intergenic |
| GATTGCTGCTGTGCAAGAGC+AGG | 0.514712 | 6_1:-85051129 | Msa0895960:intron |
| AGAGCATGTCAAGCTAGAAA+AGG | 0.514729 | 6_1:-85051213 | Msa0895960:CDS |
| CTGATGAAATGCTTCCTTCG+TGG | 0.516594 | 6_1:-85051355 | Msa0895960:CDS |
| AAAGATAGCCAGATGATTCA+GGG | 0.519030 | 6_1:-85051458 | Msa0895960:CDS |
| AAAAGCATTCATACAGTCAT+CGG | 0.521280 | 6_1:+85051385 | None:intergenic |
| TGAGGAGTTTGATCTCATCA+AGG | 0.522969 | 6_1:+85050266 | None:intergenic |
| GTGGTTCCAGTAAGTTGCCA+TGG | 0.538088 | 6_1:-85051433 | Msa0895960:CDS |
| AAACATCCACGCCTGTGTGC+AGG | 0.551422 | 6_1:+85050332 | None:intergenic |
| TTCACCCGAGAAAAGTTCTA+GGG | 0.553463 | 6_1:-85051312 | Msa0895960:CDS |
| AATTAATGTTAAAATTGCCT+AGG | 0.553788 | 6_1:+85050085 | None:intergenic |
| TATCATGTCACGGAGTATCT+GGG | 0.558059 | 6_1:-85050391 | Msa0895960:CDS |
| AGCCAGATGATTCAGGGTGG+TGG | 0.560576 | 6_1:-85051452 | Msa0895960:CDS |
| AAAATGTGATACTTGTCTCC+AGG | 0.560708 | 6_1:+85050223 | None:intergenic |
| TGATTTAGGTGTTTCACAAG+AGG | 0.562368 | 6_1:-85051159 | Msa0895960:CDS |
| GTTCAGAACTGGCTTTGAAG+AGG | 0.570491 | 6_1:-85050458 | Msa0895960:intron |
| GCATTACAATTATTTAACCA+TGG | 0.583609 | 6_1:+85051416 | None:intergenic |
| CATGCTTATTGACATACTTG+AGG | 0.591754 | 6_1:+85050248 | None:intergenic |
| AGCTGGTCGCTATCATGTCA+CGG | 0.610929 | 6_1:-85050401 | Msa0895960:CDS |
| TGGCTATCTTTAAGAGACTG+AGG | 0.636805 | 6_1:+85051470 | None:intergenic |
| GGATGAGAATAATGCTCATG+CGG | 0.644136 | 6_1:-85051291 | Msa0895960:CDS |
| TTACAGAATTTAAAACAACA+TGG | 0.659407 | 6_1:+85050425 | None:intergenic |
| TCATGACCTGCACACAGGCG+TGG | 0.662259 | 6_1:-85050338 | Msa0895960:CDS |
| ATGAAATGCTTCCTTCGTGG+AGG | 0.667533 | 6_1:-85051352 | Msa0895960:CDS |
| TGAAGAAGTTGACATTACAT+GGG | 0.693777 | 6_1:-85051186 | Msa0895960:CDS |
| CAAGCTCATGACCTGCACAC+AGG | 0.696036 | 6_1:-85050343 | Msa0895960:CDS |
| ATGGTTAAATAATTGTAATG+CGG | 0.708492 | 6_1:-85051414 | Msa0895960:CDS |
| TAAAATCATAAAGAACAACA+AGG | 0.723903 | 6_1:-85050305 | Msa0895960:CDS |
| GATAGCCAGATGATTCAGGG+TGG | 0.778676 | 6_1:-85051455 | Msa0895960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTAAAATTACAATGTA+GGG | + | chr6_1:85050695-85050714 | None:intergenic | 15.0% |
| !! | TAAAGTTAAAATTACAATGT+AGG | + | chr6_1:85050696-85050715 | None:intergenic | 15.0% |
| !! | AAAGTTAAAATTACAATGTA+GGG | + | chr6_1:85050695-85050714 | None:intergenic | 15.0% |
| !! | TAAAGTTAAAATTACAATGT+AGG | + | chr6_1:85050696-85050715 | None:intergenic | 15.0% |
| !! | AAAATAAAAACACATACTGA+AGG | - | chr6_1:85050105-85050124 | Msa0895960:CDS | 20.0% |
| !! | ATGGTTAAATAATTGTAATG+CGG | - | chr6_1:85050197-85050216 | Msa0895960:CDS | 20.0% |
| !! | TTTAAATGTAAAGAGAATTC+CGG | + | chr6_1:85050746-85050765 | None:intergenic | 20.0% |
| !!! | ACAACATTTTGTGAATTTTT+TGG | - | chr6_1:85050826-85050845 | Msa0895960:intron | 20.0% |
| !! | AAAATAAAGTGAAACTAAGA+TGG | - | chr6_1:85050864-85050883 | Msa0895960:intron | 20.0% |
| !!! | ATTTGTATTTTAACAAAGCA+AGG | + | chr6_1:85050929-85050948 | None:intergenic | 20.0% |
| !! | TCACAAATCATTAATATACT+CGG | + | chr6_1:85050952-85050971 | None:intergenic | 20.0% |
| !!! | TTACAGAATTTAAAACAACA+TGG | + | chr6_1:85051189-85051208 | None:intergenic | 20.0% |
| !! | TAAAATCATAAAGAACAACA+AGG | - | chr6_1:85051306-85051325 | Msa0895960:CDS | 20.0% |
| !! | AAAATAAAAACACATACTGA+AGG | - | chr6_1:85050105-85050124 | Msa0895960:CDS | 20.0% |
| !! | ATGGTTAAATAATTGTAATG+CGG | - | chr6_1:85050197-85050216 | Msa0895960:CDS | 20.0% |
| !! | TTTAAATGTAAAGAGAATTC+CGG | + | chr6_1:85050746-85050765 | None:intergenic | 20.0% |
| !!! | ACAACATTTTGTGAATTTTT+TGG | - | chr6_1:85050826-85050845 | Msa0895960:intron | 20.0% |
| !! | AAAATAAAGTGAAACTAAGA+TGG | - | chr6_1:85050864-85050883 | Msa0895960:intron | 20.0% |
| !!! | ATTTGTATTTTAACAAAGCA+AGG | + | chr6_1:85050929-85050948 | None:intergenic | 20.0% |
| !! | TCACAAATCATTAATATACT+CGG | + | chr6_1:85050952-85050971 | None:intergenic | 20.0% |
| !!! | TTACAGAATTTAAAACAACA+TGG | + | chr6_1:85051189-85051208 | None:intergenic | 20.0% |
| !! | TAAAATCATAAAGAACAACA+AGG | - | chr6_1:85051306-85051325 | Msa0895960:CDS | 20.0% |
| ! | GCATTACAATTATTTAACCA+TGG | + | chr6_1:85050198-85050217 | None:intergenic | 25.0% |
| !!! | CAACTACTGTTGATAATTAT+GGG | - | chr6_1:85050364-85050383 | Msa0895960:CDS | 25.0% |
| !!! | TTGTTATTTTTTTTTCCACC+CGG | - | chr6_1:85050724-85050743 | Msa0895960:intron | 25.0% |
| ! | TTAAATGTAAAGAGAATTCC+GGG | + | chr6_1:85050745-85050764 | None:intergenic | 25.0% |
| ! | TACATTAATCAGTTCATAAC+AGG | - | chr6_1:85050773-85050792 | Msa0895960:intron | 25.0% |
| !!! | ACAAAGCAAGGAATTTTTTA+CGG | + | chr6_1:85050917-85050936 | None:intergenic | 25.0% |
| !!! | AACAAAAGTATCTACATAGA+CGG | + | chr6_1:85051049-85051068 | None:intergenic | 25.0% |
| !!! | GTTTTAAATTCTGTAATAGC+TGG | - | chr6_1:85051193-85051212 | Msa0895960:CDS | 25.0% |
| ! | GCATTACAATTATTTAACCA+TGG | + | chr6_1:85050198-85050217 | None:intergenic | 25.0% |
| !!! | CAACTACTGTTGATAATTAT+GGG | - | chr6_1:85050364-85050383 | Msa0895960:CDS | 25.0% |
| !!! | TTGTTATTTTTTTTTCCACC+CGG | - | chr6_1:85050724-85050743 | Msa0895960:intron | 25.0% |
| ! | TTAAATGTAAAGAGAATTCC+GGG | + | chr6_1:85050745-85050764 | None:intergenic | 25.0% |
| ! | TACATTAATCAGTTCATAAC+AGG | - | chr6_1:85050773-85050792 | Msa0895960:intron | 25.0% |
| !!! | ACAAAGCAAGGAATTTTTTA+CGG | + | chr6_1:85050917-85050936 | None:intergenic | 25.0% |
| !!! | AACAAAAGTATCTACATAGA+CGG | + | chr6_1:85051049-85051068 | None:intergenic | 25.0% |
| !!! | GTTTTAAATTCTGTAATAGC+TGG | - | chr6_1:85051193-85051212 | Msa0895960:CDS | 25.0% |
| !! | AAAAGCATTCATACAGTCAT+CGG | + | chr6_1:85050229-85050248 | None:intergenic | 30.0% |
| CCATAATTATCAACAGTAGT+TGG | + | chr6_1:85050366-85050385 | None:intergenic | 30.0% | |
| !! | CCAACTACTGTTGATAATTA+TGG | - | chr6_1:85050363-85050382 | Msa0895960:CDS | 30.0% |
| ATGAAGAAGTTGACATTACA+TGG | - | chr6_1:85050424-85050443 | Msa0895960:CDS | 30.0% | |
| TGAAGAAGTTGACATTACAT+GGG | - | chr6_1:85050425-85050444 | Msa0895960:CDS | 30.0% | |
| ATTACATGGGAAGATGATTT+AGG | - | chr6_1:85050438-85050457 | Msa0895960:CDS | 30.0% | |
| !!! | GAATTTTTTACGGATCAAGA+AGG | + | chr6_1:85050907-85050926 | None:intergenic | 30.0% |
| !! | ACAAAAGTATCTACATAGAC+GGG | + | chr6_1:85051048-85051067 | None:intergenic | 30.0% |
| !! | ACTTTTGTTATGTTGCACAA+TGG | - | chr6_1:85051060-85051079 | Msa0895960:intron | 30.0% |
| ATATTCTTGTCATTGTTCCA+TGG | - | chr6_1:85051083-85051102 | Msa0895960:intron | 30.0% | |
| !! | AAAAGCATTCATACAGTCAT+CGG | + | chr6_1:85050229-85050248 | None:intergenic | 30.0% |
| CCATAATTATCAACAGTAGT+TGG | + | chr6_1:85050366-85050385 | None:intergenic | 30.0% | |
| !! | CCAACTACTGTTGATAATTA+TGG | - | chr6_1:85050363-85050382 | Msa0895960:CDS | 30.0% |
| ATGAAGAAGTTGACATTACA+TGG | - | chr6_1:85050424-85050443 | Msa0895960:CDS | 30.0% | |
| TGAAGAAGTTGACATTACAT+GGG | - | chr6_1:85050425-85050444 | Msa0895960:CDS | 30.0% | |
| ATTACATGGGAAGATGATTT+AGG | - | chr6_1:85050438-85050457 | Msa0895960:CDS | 30.0% | |
| !!! | GAATTTTTTACGGATCAAGA+AGG | + | chr6_1:85050907-85050926 | None:intergenic | 30.0% |
| !! | ACAAAAGTATCTACATAGAC+GGG | + | chr6_1:85051048-85051067 | None:intergenic | 30.0% |
| !! | ACTTTTGTTATGTTGCACAA+TGG | - | chr6_1:85051060-85051079 | Msa0895960:intron | 30.0% |
| ATATTCTTGTCATTGTTCCA+TGG | - | chr6_1:85051083-85051102 | Msa0895960:intron | 30.0% | |
| TAAAGATAGCCAGATGATTC+AGG | - | chr6_1:85050152-85050171 | Msa0895960:CDS | 35.0% | |
| AAAGATAGCCAGATGATTCA+GGG | - | chr6_1:85050153-85050172 | Msa0895960:CDS | 35.0% | |
| ATTTAACCATGGCAACTTAC+TGG | + | chr6_1:85050187-85050206 | None:intergenic | 35.0% | |
| ! | TGACTGTATGAATGCTTTTG+AGG | - | chr6_1:85050230-85050249 | Msa0895960:CDS | 35.0% |
| ! | GACTGTATGAATGCTTTTGA+GGG | - | chr6_1:85050231-85050250 | Msa0895960:CDS | 35.0% |
| TGATTTAGGTGTTTCACAAG+AGG | - | chr6_1:85050452-85050471 | Msa0895960:CDS | 35.0% | |
| GTGCACAATCTTTAGATTGA+AGG | + | chr6_1:85050544-85050563 | None:intergenic | 35.0% | |
| TCAATCTAAAGATTGTGCAC+AGG | - | chr6_1:85050544-85050563 | Msa0895960:intron | 35.0% | |
| !! | CAGTTCTGAACAACAAAACA+TGG | + | chr6_1:85051144-85051163 | None:intergenic | 35.0% |
| !!! | CATGTTTTGTTGTTCAGAAC+TGG | - | chr6_1:85051142-85051161 | Msa0895960:CDS | 35.0% |
| CATGCTTATTGACATACTTG+AGG | + | chr6_1:85051366-85051385 | None:intergenic | 35.0% | |
| TATGTCAATAAGCATGATCC+TGG | - | chr6_1:85051370-85051389 | Msa0895960:CDS | 35.0% | |
| AAAATGTGATACTTGTCTCC+AGG | + | chr6_1:85051391-85051410 | None:intergenic | 35.0% | |
| ! | GAGACAAGTATCACATTTTG+CGG | - | chr6_1:85051392-85051411 | Msa0895960:CDS | 35.0% |
| TAAAGATAGCCAGATGATTC+AGG | - | chr6_1:85050152-85050171 | Msa0895960:CDS | 35.0% | |
| AAAGATAGCCAGATGATTCA+GGG | - | chr6_1:85050153-85050172 | Msa0895960:CDS | 35.0% | |
| ATTTAACCATGGCAACTTAC+TGG | + | chr6_1:85050187-85050206 | None:intergenic | 35.0% | |
| ! | TGACTGTATGAATGCTTTTG+AGG | - | chr6_1:85050230-85050249 | Msa0895960:CDS | 35.0% |
| ! | GACTGTATGAATGCTTTTGA+GGG | - | chr6_1:85050231-85050250 | Msa0895960:CDS | 35.0% |
| TGATTTAGGTGTTTCACAAG+AGG | - | chr6_1:85050452-85050471 | Msa0895960:CDS | 35.0% | |
| GTGCACAATCTTTAGATTGA+AGG | + | chr6_1:85050544-85050563 | None:intergenic | 35.0% | |
| TCAATCTAAAGATTGTGCAC+AGG | - | chr6_1:85050544-85050563 | Msa0895960:intron | 35.0% | |
| !! | CAGTTCTGAACAACAAAACA+TGG | + | chr6_1:85051144-85051163 | None:intergenic | 35.0% |
| !!! | CATGTTTTGTTGTTCAGAAC+TGG | - | chr6_1:85051142-85051161 | Msa0895960:CDS | 35.0% |
| CATGCTTATTGACATACTTG+AGG | + | chr6_1:85051366-85051385 | None:intergenic | 35.0% | |
| TATGTCAATAAGCATGATCC+TGG | - | chr6_1:85051370-85051389 | Msa0895960:CDS | 35.0% | |
| AAAATGTGATACTTGTCTCC+AGG | + | chr6_1:85051391-85051410 | None:intergenic | 35.0% | |
| ! | GAGACAAGTATCACATTTTG+CGG | - | chr6_1:85051392-85051411 | Msa0895960:CDS | 35.0% |
| ! | TGGCTATCTTTAAGAGACTG+AGG | + | chr6_1:85050144-85050163 | None:intergenic | 40.0% |
| TTCACCCGAGAAAAGTTCTA+GGG | - | chr6_1:85050299-85050318 | Msa0895960:CDS | 40.0% | |
| ! | TCATCCCTAGAACTTTTCTC+GGG | + | chr6_1:85050306-85050325 | None:intergenic | 40.0% |
| ! | CTCATCCCTAGAACTTTTCT+CGG | + | chr6_1:85050307-85050326 | None:intergenic | 40.0% |
| GGATGAGAATAATGCTCATG+CGG | - | chr6_1:85050320-85050339 | Msa0895960:CDS | 40.0% | |
| AGAGCATGTCAAGCTAGAAA+AGG | - | chr6_1:85050398-85050417 | Msa0895960:CDS | 40.0% | |
| AGAGCAGGTAAGGCAAATAA+AGG | - | chr6_1:85050497-85050516 | Msa0895960:intron | 40.0% | |
| AGATTGTGCACAGGAAAAAC+AGG | - | chr6_1:85050553-85050572 | Msa0895960:intron | 40.0% | |
| AATGTAAAGAGAATTCCGGG+TGG | + | chr6_1:85050742-85050761 | None:intergenic | 40.0% | |
| GTACTTTATGCCATGTCAGA+AGG | - | chr6_1:85051013-85051032 | Msa0895960:intron | 40.0% | |
| ! | TTCCATGGTGTTTCTCCTTT+TGG | - | chr6_1:85051098-85051117 | Msa0895960:intron | 40.0% |
| GATAGCATGTCAAAGCCAAA+AGG | + | chr6_1:85051116-85051135 | None:intergenic | 40.0% | |
| ! | TATCATGTCACGGAGTATCT+GGG | - | chr6_1:85051220-85051239 | Msa0895960:CDS | 40.0% |
| TGAGGAGTTTGATCTCATCA+AGG | + | chr6_1:85051348-85051367 | None:intergenic | 40.0% | |
| CATTAGATACTGTCCTTCCT+AGG | - | chr6_1:85051509-85051528 | Msa0895960:CDS | 40.0% | |
| ! | TGGCTATCTTTAAGAGACTG+AGG | + | chr6_1:85050144-85050163 | None:intergenic | 40.0% |
| TTCACCCGAGAAAAGTTCTA+GGG | - | chr6_1:85050299-85050318 | Msa0895960:CDS | 40.0% | |
| ! | TCATCCCTAGAACTTTTCTC+GGG | + | chr6_1:85050306-85050325 | None:intergenic | 40.0% |
| ! | CTCATCCCTAGAACTTTTCT+CGG | + | chr6_1:85050307-85050326 | None:intergenic | 40.0% |
| GGATGAGAATAATGCTCATG+CGG | - | chr6_1:85050320-85050339 | Msa0895960:CDS | 40.0% | |
| AGAGCATGTCAAGCTAGAAA+AGG | - | chr6_1:85050398-85050417 | Msa0895960:CDS | 40.0% | |
| AGAGCAGGTAAGGCAAATAA+AGG | - | chr6_1:85050497-85050516 | Msa0895960:intron | 40.0% | |
| AGATTGTGCACAGGAAAAAC+AGG | - | chr6_1:85050553-85050572 | Msa0895960:intron | 40.0% | |
| AATGTAAAGAGAATTCCGGG+TGG | + | chr6_1:85050742-85050761 | None:intergenic | 40.0% | |
| GTACTTTATGCCATGTCAGA+AGG | - | chr6_1:85051013-85051032 | Msa0895960:intron | 40.0% | |
| ! | TTCCATGGTGTTTCTCCTTT+TGG | - | chr6_1:85051098-85051117 | Msa0895960:intron | 40.0% |
| GATAGCATGTCAAAGCCAAA+AGG | + | chr6_1:85051116-85051135 | None:intergenic | 40.0% | |
| ! | TATCATGTCACGGAGTATCT+GGG | - | chr6_1:85051220-85051239 | Msa0895960:CDS | 40.0% |
| TGAGGAGTTTGATCTCATCA+AGG | + | chr6_1:85051348-85051367 | None:intergenic | 40.0% | |
| CATTAGATACTGTCCTTCCT+AGG | - | chr6_1:85051509-85051528 | Msa0895960:CDS | 40.0% | |
| CTGATGAAATGCTTCCTTCG+TGG | - | chr6_1:85050256-85050275 | Msa0895960:CDS | 45.0% | |
| ATGAAATGCTTCCTTCGTGG+AGG | - | chr6_1:85050259-85050278 | Msa0895960:CDS | 45.0% | |
| CTTCACCCGAGAAAAGTTCT+AGG | - | chr6_1:85050298-85050317 | Msa0895960:CDS | 45.0% | |
| GGTAAGGCAAATAAAGGCTC+AGG | - | chr6_1:85050503-85050522 | Msa0895960:intron | 45.0% | |
| AAGGCAAATAAAGGCTCAGG+AGG | - | chr6_1:85050506-85050525 | Msa0895960:intron | 45.0% | |
| ! | GTTGTTTGTGCTTGCTAGTG+TGG | + | chr6_1:85050811-85050830 | None:intergenic | 45.0% |
| GTTCATTGAGCCTTCTGACA+TGG | + | chr6_1:85051026-85051045 | None:intergenic | 45.0% | |
| AGCCAAAAGGAGAAACACCA+TGG | + | chr6_1:85051103-85051122 | None:intergenic | 45.0% | |
| !! | GTTCAGAACTGGCTTTGAAG+AGG | - | chr6_1:85051153-85051172 | Msa0895960:CDS | 45.0% |
| ! | CTATCATGTCACGGAGTATC+TGG | - | chr6_1:85051219-85051238 | Msa0895960:CDS | 45.0% |
| CTGATGAAATGCTTCCTTCG+TGG | - | chr6_1:85050256-85050275 | Msa0895960:CDS | 45.0% | |
| ATGAAATGCTTCCTTCGTGG+AGG | - | chr6_1:85050259-85050278 | Msa0895960:CDS | 45.0% | |
| CTTCACCCGAGAAAAGTTCT+AGG | - | chr6_1:85050298-85050317 | Msa0895960:CDS | 45.0% | |
| GGTAAGGCAAATAAAGGCTC+AGG | - | chr6_1:85050503-85050522 | Msa0895960:intron | 45.0% | |
| AAGGCAAATAAAGGCTCAGG+AGG | - | chr6_1:85050506-85050525 | Msa0895960:intron | 45.0% | |
| ! | GTTGTTTGTGCTTGCTAGTG+TGG | + | chr6_1:85050811-85050830 | None:intergenic | 45.0% |
| GTTCATTGAGCCTTCTGACA+TGG | + | chr6_1:85051026-85051045 | None:intergenic | 45.0% | |
| AGCCAAAAGGAGAAACACCA+TGG | + | chr6_1:85051103-85051122 | None:intergenic | 45.0% | |
| !! | GTTCAGAACTGGCTTTGAAG+AGG | - | chr6_1:85051153-85051172 | Msa0895960:CDS | 45.0% |
| ! | CTATCATGTCACGGAGTATC+TGG | - | chr6_1:85051219-85051238 | Msa0895960:CDS | 45.0% |
| GATAGCCAGATGATTCAGGG+TGG | - | chr6_1:85050156-85050175 | Msa0895960:CDS | 50.0% | |
| AACCACCACCCTGAATCATC+TGG | + | chr6_1:85050164-85050183 | None:intergenic | 50.0% | |
| GTGGTTCCAGTAAGTTGCCA+TGG | - | chr6_1:85050178-85050197 | Msa0895960:CDS | 50.0% | |
| !! | CTACTTTTCTGCCTCCACGA+AGG | + | chr6_1:85050273-85050292 | None:intergenic | 50.0% |
| GCAAATAAAGGCTCAGGAGG+AGG | - | chr6_1:85050509-85050528 | Msa0895960:intron | 50.0% | |
| AGCTGGTCGCTATCATGTCA+CGG | - | chr6_1:85051210-85051229 | Msa0895960:CDS | 50.0% | |
| GATAGCCAGATGATTCAGGG+TGG | - | chr6_1:85050156-85050175 | Msa0895960:CDS | 50.0% | |
| AACCACCACCCTGAATCATC+TGG | + | chr6_1:85050164-85050183 | None:intergenic | 50.0% | |
| GTGGTTCCAGTAAGTTGCCA+TGG | - | chr6_1:85050178-85050197 | Msa0895960:CDS | 50.0% | |
| !! | CTACTTTTCTGCCTCCACGA+AGG | + | chr6_1:85050273-85050292 | None:intergenic | 50.0% |
| GCAAATAAAGGCTCAGGAGG+AGG | - | chr6_1:85050509-85050528 | Msa0895960:intron | 50.0% | |
| AGCTGGTCGCTATCATGTCA+CGG | - | chr6_1:85051210-85051229 | Msa0895960:CDS | 50.0% | |
| AGCCAGATGATTCAGGGTGG+TGG | - | chr6_1:85050159-85050178 | Msa0895960:CDS | 55.0% | |
| GATTGCTGCTGTGCAAGAGC+AGG | - | chr6_1:85050482-85050501 | Msa0895960:intron | 55.0% | |
| CTGCTGTGCAAGAGCAGGTA+AGG | - | chr6_1:85050487-85050506 | Msa0895960:intron | 55.0% | |
| CAAGCTCATGACCTGCACAC+AGG | - | chr6_1:85051268-85051287 | Msa0895960:CDS | 55.0% | |
| AAACATCCACGCCTGTGTGC+AGG | + | chr6_1:85051282-85051301 | None:intergenic | 55.0% | |
| AGCCAGATGATTCAGGGTGG+TGG | - | chr6_1:85050159-85050178 | Msa0895960:CDS | 55.0% | |
| GATTGCTGCTGTGCAAGAGC+AGG | - | chr6_1:85050482-85050501 | Msa0895960:intron | 55.0% | |
| CTGCTGTGCAAGAGCAGGTA+AGG | - | chr6_1:85050487-85050506 | Msa0895960:intron | 55.0% | |
| CAAGCTCATGACCTGCACAC+AGG | - | chr6_1:85051268-85051287 | Msa0895960:CDS | 55.0% | |
| AAACATCCACGCCTGTGTGC+AGG | + | chr6_1:85051282-85051301 | None:intergenic | 55.0% | |
| TCATGACCTGCACACAGGCG+TGG | - | chr6_1:85051273-85051292 | Msa0895960:CDS | 60.0% | |
| TCATGACCTGCACACAGGCG+TGG | - | chr6_1:85051273-85051292 | Msa0895960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 85050093 | 85051540 | 85050093 | ID=Msa0895960;Name=Msa0895960 |
| chr6_1 | mRNA | 85050093 | 85051540 | 85050093 | ID=Msa0895960-mRNA-1;Parent=Msa0895960;Name=Msa0895960-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.66|1|1|3|0|273 |
| chr6_1 | exon | 85051130 | 85051540 | 85051130 | ID=Msa0895960-mRNA-1:exon:14355;Parent=Msa0895960-mRNA-1 |
| chr6_1 | exon | 85050607 | 85050635 | 85050607 | ID=Msa0895960-mRNA-1:exon:14354;Parent=Msa0895960-mRNA-1 |
| chr6_1 | exon | 85050093 | 85050474 | 85050093 | ID=Msa0895960-mRNA-1:exon:14353;Parent=Msa0895960-mRNA-1 |
| chr6_1 | CDS | 85051130 | 85051540 | 85051130 | ID=Msa0895960-mRNA-1:cds;Parent=Msa0895960-mRNA-1 |
| chr6_1 | CDS | 85050607 | 85050635 | 85050607 | ID=Msa0895960-mRNA-1:cds;Parent=Msa0895960-mRNA-1 |
| chr6_1 | CDS | 85050093 | 85050474 | 85050093 | ID=Msa0895960-mRNA-1:cds;Parent=Msa0895960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
