Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418110 | sp|Q09690|POM1_SCHPO | 38.095 | 105 | 61 | 3 | 149 | 251 | 679 | 781 | 2.65e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418110 | A0A072UCM1 | 86.154 | 260 | 22 | 2 | 5 | 250 | 721 | 980 | 8.48e-139 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022550 | Msa1418110 | 0.803880 | 2.822783e-49 | -8.615850e-47 |
| Msa0042550 | Msa1418110 | 0.811814 | 5.798339e-51 | -8.615850e-47 |
| Msa0054820 | Msa1418110 | 0.816718 | 4.786341e-52 | -8.615850e-47 |
| Msa0056450 | Msa1418110 | 0.824667 | 7.130371e-54 | -8.615850e-47 |
| Msa0100160 | Msa1418110 | 0.813004 | 3.188149e-51 | -8.615850e-47 |
| Msa0103250 | Msa1418110 | 0.803794 | 2.940762e-49 | -8.615850e-47 |
| Msa0106620 | Msa1418110 | 0.802432 | 5.627269e-49 | -8.615850e-47 |
| Msa1359560 | Msa1418110 | 0.802405 | 5.697985e-49 | -8.615850e-47 |
| Msa1368430 | Msa1418110 | 0.813648 | 2.300961e-51 | -8.615850e-47 |
| Msa1372150 | Msa1418110 | 0.810827 | 9.497800e-51 | -8.615850e-47 |
| Msa1408620 | Msa1418110 | -0.804185 | 2.439096e-49 | -8.615850e-47 |
| Msa1418110 | Msa1439710 | 0.800685 | 1.283549e-48 | -8.615850e-47 |
| Msa1418110 | Msa1446780 | 0.804298 | 2.310261e-49 | -8.615850e-47 |
| Msa0637900 | Msa1418110 | 0.810171 | 1.316119e-50 | -8.615850e-47 |
| Msa0641730 | Msa1418110 | 0.807486 | 4.937858e-50 | -8.615850e-47 |
| Msa0652690 | Msa1418110 | 0.809235 | 2.091536e-50 | -8.615850e-47 |
| Msa0661320 | Msa1418110 | 0.816646 | 4.968581e-52 | -8.615850e-47 |
| Msa0741070 | Msa1418110 | 0.817612 | 3.013415e-52 | -8.615850e-47 |
| Msa0795070 | Msa1418110 | 0.800939 | 1.139021e-48 | -8.615850e-47 |
| Msa0797770 | Msa1418110 | 0.801581 | 8.415283e-49 | -8.615850e-47 |
| Msa0800700 | Msa1418110 | 0.802909 | 4.484520e-49 | -8.615850e-47 |
| Msa0138750 | Msa1418110 | 0.810030 | 1.411371e-50 | -8.615850e-47 |
| Msa0143850 | Msa1418110 | 0.812736 | 3.648128e-51 | -8.615850e-47 |
| Msa0168870 | Msa1418110 | 0.810633 | 1.046095e-50 | -8.615850e-47 |
| Msa0178510 | Msa1418110 | 0.805313 | 1.418064e-49 | -8.615850e-47 |
| Msa0181230 | Msa1418110 | 0.801945 | 7.084772e-49 | -8.615850e-47 |
| Msa0218350 | Msa1418110 | 0.806888 | 6.608341e-50 | -8.615850e-47 |
| Msa0225220 | Msa1418110 | 0.808262 | 3.375845e-50 | -8.615850e-47 |
| Msa0455740 | Msa1418110 | 0.802348 | 5.854731e-49 | -8.615850e-47 |
| Msa0480780 | Msa1418110 | 0.801497 | 8.756635e-49 | -8.615850e-47 |
| Msa1034500 | Msa1418110 | 0.814159 | 1.775401e-51 | -8.615850e-47 |
| Msa1038080 | Msa1418110 | 0.804480 | 2.117439e-49 | -8.615850e-47 |
| Msa1080960 | Msa1418110 | 0.801627 | 8.234201e-49 | -8.615850e-47 |
| Msa1088410 | Msa1418110 | 0.807913 | 4.007527e-50 | -8.615850e-47 |
| Msa1098250 | Msa1418110 | 0.809277 | 2.048567e-50 | -8.615850e-47 |
| Msa0307310 | Msa1418110 | 0.822694 | 2.065791e-53 | -8.615850e-47 |
| Msa0342010 | Msa1418110 | 0.816289 | 5.971605e-52 | -8.615850e-47 |
| Msa0347950 | Msa1418110 | 0.802449 | 5.581769e-49 | -8.615850e-47 |
| Msa0347990 | Msa1418110 | 0.808124 | 3.612665e-50 | -8.615850e-47 |
| Msa0348530 | Msa1418110 | 0.814228 | 1.714406e-51 | -8.615850e-47 |
| Msa1145810 | Msa1418110 | 0.811332 | 7.382183e-51 | -8.615850e-47 |
| Msa0574390 | Msa1418110 | 0.815368 | 9.584434e-52 | -8.615850e-47 |
| Msa0576680 | Msa1418110 | 0.808669 | 2.764335e-50 | -8.615850e-47 |
| Msa0588090 | Msa1418110 | 0.804399 | 2.200628e-49 | -8.615850e-47 |
| Msa0598160 | Msa1418110 | 0.804072 | 2.575023e-49 | -8.615850e-47 |
| Msa0868160 | Msa1418110 | 0.821754 | 3.412885e-53 | -8.615850e-47 |
| Msa0895960 | Msa1418110 | 0.882049 | 1.443035e-70 | -8.615850e-47 |
| Msa0900620 | Msa1418110 | 0.805426 | 1.342642e-49 | -8.615850e-47 |
| Msa0903390 | Msa1418110 | 0.814886 | 1.225999e-51 | -8.615850e-47 |
| Msa0906690 | Msa1418110 | 0.800376 | 1.484007e-48 | -8.615850e-47 |
| Msa0936390 | Msa1418110 | 0.815394 | 9.456093e-52 | -8.615850e-47 |
| Msa0945240 | Msa1418110 | 0.803285 | 3.749200e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418110 | MtrunA17_Chr6g0480541 | 88.800 | 250 | 14 | 2 | 5 | 240 | 721 | 970 | 1.45e-141 | 427 |
| Msa1418110 | MtrunA17_Chr6g0480491 | 96.947 | 131 | 4 | 0 | 7 | 137 | 32 | 162 | 7.95e-89 | 261 |
| Msa1418110 | MtrunA17_Chr6g0480481 | 88.462 | 104 | 12 | 0 | 147 | 250 | 13 | 116 | 2.74e-61 | 192 |
| Msa1418110 | MtrunA17_Chr5g0437131 | 54.088 | 159 | 65 | 2 | 91 | 244 | 324 | 479 | 3.12e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418110 | AT1G73450.1 | 56.349 | 252 | 88 | 5 | 6 | 240 | 667 | 913 | 9.95e-71 | 236 |
| Msa1418110 | AT1G73460.2 | 55.556 | 252 | 93 | 5 | 6 | 240 | 681 | 930 | 4.02e-67 | 226 |
| Msa1418110 | AT1G73460.1 | 55.556 | 252 | 93 | 5 | 6 | 240 | 681 | 930 | 4.02e-67 | 226 |
| Msa1418110 | AT3G17750.1 | 52.778 | 252 | 98 | 6 | 6 | 240 | 652 | 899 | 5.78e-63 | 214 |
| Msa1418110 | AT2G40120.1 | 47.170 | 212 | 95 | 5 | 50 | 244 | 126 | 337 | 5.27e-47 | 165 |
Find 41 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTACTGTTGATAATTA+TGG | 0.117749 | tig0024536:-14040 | Msa1418110:CDS |
| ATTTAACCATGGCAACTTAC+TGG | 0.230968 | tig0024536:+14219 | None:intergenic |
| CTATCATGTCACGGAGTATC+TGG | 0.264842 | tig0024536:-13183 | Msa1418110:CDS |
| TAAAGATAGCCAGATGATTC+AGG | 0.272060 | tig0024536:-14251 | Msa1418110:CDS |
| ATTACATGGGAAGATGATTT+AGG | 0.286175 | tig0024536:-13965 | Msa1418110:CDS |
| CTTCACCCGAGAAAAGTTCT+AGG | 0.316441 | tig0024536:-14105 | Msa1418110:CDS |
| CAACTACTGTTGATAATTAT+GGG | 0.381112 | tig0024536:-14039 | Msa1418110:CDS |
| CATTAGATACTGTCCTTCCT+AGG | 0.462058 | tig0024536:-12893 | Msa1418110:CDS |
| ATGAAGAAGTTGACATTACA+TGG | 0.483552 | tig0024536:-13979 | Msa1418110:CDS |
| AACCACCACCCTGAATCATC+TGG | 0.494607 | tig0024536:+14242 | None:intergenic |
| TATGTCAATAAGCATGATCC+TGG | 0.504155 | tig0024536:-13032 | Msa1418110:CDS |
| CCATAATTATCAACAGTAGT+TGG | 0.505346 | tig0024536:+14040 | None:intergenic |
| AATGTTAAAATTGCCTAGGA+AGG | 0.513726 | tig0024536:+12880 | None:intergenic |
| GATTGCTGCTGTGCAAGAGC+AGG | 0.514712 | tig0024536:-13921 | Msa1418110:intron |
| AGAGCATGTCAAGCTAGAAA+AGG | 0.514729 | tig0024536:-14005 | Msa1418110:CDS |
| CTGATGAAATGCTTCCTTCG+TGG | 0.516594 | tig0024536:-14147 | Msa1418110:CDS |
| AAAGATAGCCAGATGATTCA+GGG | 0.519030 | tig0024536:-14250 | Msa1418110:CDS |
| AAAAGCATTCATACAGTCAT+CGG | 0.521280 | tig0024536:+14177 | None:intergenic |
| TGAGGAGTTTGATCTCATCA+AGG | 0.522969 | tig0024536:+13057 | None:intergenic |
| GTGGTTCCAGTAAGTTGCCA+TGG | 0.538088 | tig0024536:-14225 | Msa1418110:CDS |
| AAACATCCACGCCTGTGTGC+AGG | 0.551422 | tig0024536:+13123 | None:intergenic |
| TTCACCCGAGAAAAGTTCTA+GGG | 0.553463 | tig0024536:-14104 | Msa1418110:CDS |
| AATTAATGTTAAAATTGCCT+AGG | 0.553788 | tig0024536:+12876 | None:intergenic |
| TATCATGTCACGGAGTATCT+GGG | 0.558059 | tig0024536:-13182 | Msa1418110:CDS |
| AGCCAGATGATTCAGGGTGG+TGG | 0.560576 | tig0024536:-14244 | Msa1418110:CDS |
| AAAATGTGATACTTGTCTCC+AGG | 0.560708 | tig0024536:+13014 | None:intergenic |
| TGATTTAGGTGTTTCACAAG+AGG | 0.562368 | tig0024536:-13951 | Msa1418110:CDS |
| GTTCAGAACTGGCTTTGAAG+AGG | 0.570491 | tig0024536:-13249 | Msa1418110:intron |
| GCATTACAATTATTTAACCA+TGG | 0.583609 | tig0024536:+14208 | None:intergenic |
| CATGCTTATTGACATACTTG+AGG | 0.591754 | tig0024536:+13039 | None:intergenic |
| AGCTGGTCGCTATCATGTCA+CGG | 0.610929 | tig0024536:-13192 | Msa1418110:CDS |
| TGGCTATCTTTAAGAGACTG+AGG | 0.636805 | tig0024536:+14262 | None:intergenic |
| GGATGAGAATAATGCTCATG+CGG | 0.644136 | tig0024536:-14083 | Msa1418110:CDS |
| TTACAGAATTTAAAACAACA+TGG | 0.659407 | tig0024536:+13216 | None:intergenic |
| TCATGACCTGCACACAGGCG+TGG | 0.662259 | tig0024536:-13129 | Msa1418110:CDS |
| ATGAAATGCTTCCTTCGTGG+AGG | 0.667533 | tig0024536:-14144 | Msa1418110:CDS |
| TGAAGAAGTTGACATTACAT+GGG | 0.693777 | tig0024536:-13978 | Msa1418110:CDS |
| CAAGCTCATGACCTGCACAC+AGG | 0.696036 | tig0024536:-13134 | Msa1418110:CDS |
| ATGGTTAAATAATTGTAATG+CGG | 0.708492 | tig0024536:-14206 | Msa1418110:CDS |
| TAAAATCATAAAGAACAACA+AGG | 0.723903 | tig0024536:-13096 | Msa1418110:CDS |
| GATAGCCAGATGATTCAGGG+TGG | 0.778676 | tig0024536:-14247 | Msa1418110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTAAAATTACAATGTA+GGG | + | tig0024536:13486-13505 | None:intergenic | 15.0% |
| !! | TAAAGTTAAAATTACAATGT+AGG | + | tig0024536:13487-13506 | None:intergenic | 15.0% |
| !! | AAAGTTAAAATTACAATGTA+GGG | + | tig0024536:13486-13505 | None:intergenic | 15.0% |
| !! | TAAAGTTAAAATTACAATGT+AGG | + | tig0024536:13487-13506 | None:intergenic | 15.0% |
| !! | AAAATAAAAACACATACTGA+AGG | - | tig0024536:12896-12915 | Msa1418110:CDS | 20.0% |
| !! | ATGGTTAAATAATTGTAATG+CGG | - | tig0024536:12988-13007 | Msa1418110:CDS | 20.0% |
| !! | TTTAAATGTAAAGAGAATTC+CGG | + | tig0024536:13538-13557 | None:intergenic | 20.0% |
| !!! | ACAACATTTTGTGAATTTTT+TGG | - | tig0024536:13618-13637 | Msa1418110:intron | 20.0% |
| !! | AAAATAAAGTGAAACTAAGA+TGG | - | tig0024536:13656-13675 | Msa1418110:intron | 20.0% |
| !!! | ATTTGTATTTTAACAAAGCA+AGG | + | tig0024536:13721-13740 | None:intergenic | 20.0% |
| !! | TCACAAATCATTAATATACT+CGG | + | tig0024536:13744-13763 | None:intergenic | 20.0% |
| !!! | TTACAGAATTTAAAACAACA+TGG | + | tig0024536:13981-14000 | None:intergenic | 20.0% |
| !! | TAAAATCATAAAGAACAACA+AGG | - | tig0024536:14098-14117 | Msa1418110:CDS | 20.0% |
| !! | AAAATAAAAACACATACTGA+AGG | - | tig0024536:12896-12915 | Msa1418110:CDS | 20.0% |
| !! | ATGGTTAAATAATTGTAATG+CGG | - | tig0024536:12988-13007 | Msa1418110:CDS | 20.0% |
| !! | TTTAAATGTAAAGAGAATTC+CGG | + | tig0024536:13538-13557 | None:intergenic | 20.0% |
| !!! | ACAACATTTTGTGAATTTTT+TGG | - | tig0024536:13618-13637 | Msa1418110:intron | 20.0% |
| !! | AAAATAAAGTGAAACTAAGA+TGG | - | tig0024536:13656-13675 | Msa1418110:intron | 20.0% |
| !!! | ATTTGTATTTTAACAAAGCA+AGG | + | tig0024536:13721-13740 | None:intergenic | 20.0% |
| !! | TCACAAATCATTAATATACT+CGG | + | tig0024536:13744-13763 | None:intergenic | 20.0% |
| !!! | TTACAGAATTTAAAACAACA+TGG | + | tig0024536:13981-14000 | None:intergenic | 20.0% |
| !! | TAAAATCATAAAGAACAACA+AGG | - | tig0024536:14098-14117 | Msa1418110:CDS | 20.0% |
| ! | GCATTACAATTATTTAACCA+TGG | + | tig0024536:12989-13008 | None:intergenic | 25.0% |
| !!! | CAACTACTGTTGATAATTAT+GGG | - | tig0024536:13155-13174 | Msa1418110:CDS | 25.0% |
| !!! | TGTTATTTTTTTTTTCCACC+CGG | - | tig0024536:13516-13535 | Msa1418110:intron | 25.0% |
| ! | TTAAATGTAAAGAGAATTCC+GGG | + | tig0024536:13537-13556 | None:intergenic | 25.0% |
| ! | TACATTAATCAGTTCATAAC+AGG | - | tig0024536:13565-13584 | Msa1418110:intron | 25.0% |
| !!! | ACAAAGCAAGGAATTTTTTA+CGG | + | tig0024536:13709-13728 | None:intergenic | 25.0% |
| !!! | AACAAAAGTATCTACATAGA+CGG | + | tig0024536:13841-13860 | None:intergenic | 25.0% |
| !!! | GTTTTAAATTCTGTAATAGC+TGG | - | tig0024536:13985-14004 | Msa1418110:CDS | 25.0% |
| ! | GCATTACAATTATTTAACCA+TGG | + | tig0024536:12989-13008 | None:intergenic | 25.0% |
| !!! | CAACTACTGTTGATAATTAT+GGG | - | tig0024536:13155-13174 | Msa1418110:CDS | 25.0% |
| !!! | TGTTATTTTTTTTTTCCACC+CGG | - | tig0024536:13516-13535 | Msa1418110:intron | 25.0% |
| ! | TTAAATGTAAAGAGAATTCC+GGG | + | tig0024536:13537-13556 | None:intergenic | 25.0% |
| ! | TACATTAATCAGTTCATAAC+AGG | - | tig0024536:13565-13584 | Msa1418110:intron | 25.0% |
| !!! | ACAAAGCAAGGAATTTTTTA+CGG | + | tig0024536:13709-13728 | None:intergenic | 25.0% |
| !!! | AACAAAAGTATCTACATAGA+CGG | + | tig0024536:13841-13860 | None:intergenic | 25.0% |
| !!! | GTTTTAAATTCTGTAATAGC+TGG | - | tig0024536:13985-14004 | Msa1418110:CDS | 25.0% |
| !! | AAAAGCATTCATACAGTCAT+CGG | + | tig0024536:13020-13039 | None:intergenic | 30.0% |
| CCATAATTATCAACAGTAGT+TGG | + | tig0024536:13157-13176 | None:intergenic | 30.0% | |
| !! | CCAACTACTGTTGATAATTA+TGG | - | tig0024536:13154-13173 | Msa1418110:CDS | 30.0% |
| ATGAAGAAGTTGACATTACA+TGG | - | tig0024536:13215-13234 | Msa1418110:CDS | 30.0% | |
| TGAAGAAGTTGACATTACAT+GGG | - | tig0024536:13216-13235 | Msa1418110:CDS | 30.0% | |
| ATTACATGGGAAGATGATTT+AGG | - | tig0024536:13229-13248 | Msa1418110:CDS | 30.0% | |
| !!! | GAATTTTTTACGGATCAAGA+AGG | + | tig0024536:13699-13718 | None:intergenic | 30.0% |
| !! | ACAAAAGTATCTACATAGAC+GGG | + | tig0024536:13840-13859 | None:intergenic | 30.0% |
| !! | ACTTTTGTTATGTTGCACAA+TGG | - | tig0024536:13852-13871 | Msa1418110:intron | 30.0% |
| ATATTCTTGTCATTGTTCCA+TGG | - | tig0024536:13875-13894 | Msa1418110:intron | 30.0% | |
| ! | TATCACATTTTGCGGTTATA+TGG | - | tig0024536:14192-14211 | Msa1418110:CDS | 30.0% |
| !! | AAAAGCATTCATACAGTCAT+CGG | + | tig0024536:13020-13039 | None:intergenic | 30.0% |
| CCATAATTATCAACAGTAGT+TGG | + | tig0024536:13157-13176 | None:intergenic | 30.0% | |
| !! | CCAACTACTGTTGATAATTA+TGG | - | tig0024536:13154-13173 | Msa1418110:CDS | 30.0% |
| ATGAAGAAGTTGACATTACA+TGG | - | tig0024536:13215-13234 | Msa1418110:CDS | 30.0% | |
| TGAAGAAGTTGACATTACAT+GGG | - | tig0024536:13216-13235 | Msa1418110:CDS | 30.0% | |
| ATTACATGGGAAGATGATTT+AGG | - | tig0024536:13229-13248 | Msa1418110:CDS | 30.0% | |
| !!! | GAATTTTTTACGGATCAAGA+AGG | + | tig0024536:13699-13718 | None:intergenic | 30.0% |
| !! | ACAAAAGTATCTACATAGAC+GGG | + | tig0024536:13840-13859 | None:intergenic | 30.0% |
| !! | ACTTTTGTTATGTTGCACAA+TGG | - | tig0024536:13852-13871 | Msa1418110:intron | 30.0% |
| ATATTCTTGTCATTGTTCCA+TGG | - | tig0024536:13875-13894 | Msa1418110:intron | 30.0% | |
| ! | TATCACATTTTGCGGTTATA+TGG | - | tig0024536:14192-14211 | Msa1418110:CDS | 30.0% |
| TAAAGATAGCCAGATGATTC+AGG | - | tig0024536:12943-12962 | Msa1418110:CDS | 35.0% | |
| AAAGATAGCCAGATGATTCA+GGG | - | tig0024536:12944-12963 | Msa1418110:CDS | 35.0% | |
| ATTTAACCATGGCAACTTAC+TGG | + | tig0024536:12978-12997 | None:intergenic | 35.0% | |
| ! | TGACTGTATGAATGCTTTTG+AGG | - | tig0024536:13021-13040 | Msa1418110:CDS | 35.0% |
| ! | GACTGTATGAATGCTTTTGA+GGG | - | tig0024536:13022-13041 | Msa1418110:CDS | 35.0% |
| TGATTTAGGTGTTTCACAAG+AGG | - | tig0024536:13243-13262 | Msa1418110:CDS | 35.0% | |
| GTGCACAATCTTTAGATTGA+AGG | + | tig0024536:13335-13354 | None:intergenic | 35.0% | |
| TCAATCTAAAGATTGTGCAC+AGG | - | tig0024536:13335-13354 | Msa1418110:intron | 35.0% | |
| !! | CAGTTCTGAACAACAAAACA+TGG | + | tig0024536:13936-13955 | None:intergenic | 35.0% |
| !!! | CATGTTTTGTTGTTCAGAAC+TGG | - | tig0024536:13934-13953 | Msa1418110:CDS | 35.0% |
| CATGCTTATTGACATACTTG+AGG | + | tig0024536:14158-14177 | None:intergenic | 35.0% | |
| TATGTCAATAAGCATGATCC+TGG | - | tig0024536:14162-14181 | Msa1418110:CDS | 35.0% | |
| AAAATGTGATACTTGTCTCC+AGG | + | tig0024536:14183-14202 | None:intergenic | 35.0% | |
| ! | GAGACAAGTATCACATTTTG+CGG | - | tig0024536:14184-14203 | Msa1418110:CDS | 35.0% |
| TAAAGATAGCCAGATGATTC+AGG | - | tig0024536:12943-12962 | Msa1418110:CDS | 35.0% | |
| AAAGATAGCCAGATGATTCA+GGG | - | tig0024536:12944-12963 | Msa1418110:CDS | 35.0% | |
| ATTTAACCATGGCAACTTAC+TGG | + | tig0024536:12978-12997 | None:intergenic | 35.0% | |
| ! | TGACTGTATGAATGCTTTTG+AGG | - | tig0024536:13021-13040 | Msa1418110:CDS | 35.0% |
| ! | GACTGTATGAATGCTTTTGA+GGG | - | tig0024536:13022-13041 | Msa1418110:CDS | 35.0% |
| TGATTTAGGTGTTTCACAAG+AGG | - | tig0024536:13243-13262 | Msa1418110:CDS | 35.0% | |
| GTGCACAATCTTTAGATTGA+AGG | + | tig0024536:13335-13354 | None:intergenic | 35.0% | |
| TCAATCTAAAGATTGTGCAC+AGG | - | tig0024536:13335-13354 | Msa1418110:intron | 35.0% | |
| !! | CAGTTCTGAACAACAAAACA+TGG | + | tig0024536:13936-13955 | None:intergenic | 35.0% |
| !!! | CATGTTTTGTTGTTCAGAAC+TGG | - | tig0024536:13934-13953 | Msa1418110:CDS | 35.0% |
| CATGCTTATTGACATACTTG+AGG | + | tig0024536:14158-14177 | None:intergenic | 35.0% | |
| TATGTCAATAAGCATGATCC+TGG | - | tig0024536:14162-14181 | Msa1418110:CDS | 35.0% | |
| AAAATGTGATACTTGTCTCC+AGG | + | tig0024536:14183-14202 | None:intergenic | 35.0% | |
| ! | GAGACAAGTATCACATTTTG+CGG | - | tig0024536:14184-14203 | Msa1418110:CDS | 35.0% |
| ! | TGGCTATCTTTAAGAGACTG+AGG | + | tig0024536:12935-12954 | None:intergenic | 40.0% |
| TTCACCCGAGAAAAGTTCTA+GGG | - | tig0024536:13090-13109 | Msa1418110:CDS | 40.0% | |
| ! | TCATCCCTAGAACTTTTCTC+GGG | + | tig0024536:13097-13116 | None:intergenic | 40.0% |
| ! | CTCATCCCTAGAACTTTTCT+CGG | + | tig0024536:13098-13117 | None:intergenic | 40.0% |
| GGATGAGAATAATGCTCATG+CGG | - | tig0024536:13111-13130 | Msa1418110:CDS | 40.0% | |
| AGAGCATGTCAAGCTAGAAA+AGG | - | tig0024536:13189-13208 | Msa1418110:CDS | 40.0% | |
| AGAGCAGGTAAGGCAAATAA+AGG | - | tig0024536:13288-13307 | Msa1418110:intron | 40.0% | |
| AGATTGTGCACAGGAAAAAC+AGG | - | tig0024536:13344-13363 | Msa1418110:intron | 40.0% | |
| AATGTAAAGAGAATTCCGGG+TGG | + | tig0024536:13534-13553 | None:intergenic | 40.0% | |
| GTACTTTATGCCATGTCAGA+AGG | - | tig0024536:13805-13824 | Msa1418110:intron | 40.0% | |
| ! | TTCCATGGTGTTTCTCCTTT+TGG | - | tig0024536:13890-13909 | Msa1418110:intron | 40.0% |
| GATAGCATGTCAAAGCCAAA+AGG | + | tig0024536:13908-13927 | None:intergenic | 40.0% | |
| ! | TATCATGTCACGGAGTATCT+GGG | - | tig0024536:14012-14031 | Msa1418110:CDS | 40.0% |
| TGAGGAGTTTGATCTCATCA+AGG | + | tig0024536:14140-14159 | None:intergenic | 40.0% | |
| CATTAGATACTGTCCTTCCT+AGG | - | tig0024536:14301-14320 | Msa1418110:CDS | 40.0% | |
| ! | TGGCTATCTTTAAGAGACTG+AGG | + | tig0024536:12935-12954 | None:intergenic | 40.0% |
| TTCACCCGAGAAAAGTTCTA+GGG | - | tig0024536:13090-13109 | Msa1418110:CDS | 40.0% | |
| ! | TCATCCCTAGAACTTTTCTC+GGG | + | tig0024536:13097-13116 | None:intergenic | 40.0% |
| ! | CTCATCCCTAGAACTTTTCT+CGG | + | tig0024536:13098-13117 | None:intergenic | 40.0% |
| GGATGAGAATAATGCTCATG+CGG | - | tig0024536:13111-13130 | Msa1418110:CDS | 40.0% | |
| AGAGCATGTCAAGCTAGAAA+AGG | - | tig0024536:13189-13208 | Msa1418110:CDS | 40.0% | |
| AGAGCAGGTAAGGCAAATAA+AGG | - | tig0024536:13288-13307 | Msa1418110:intron | 40.0% | |
| AGATTGTGCACAGGAAAAAC+AGG | - | tig0024536:13344-13363 | Msa1418110:intron | 40.0% | |
| AATGTAAAGAGAATTCCGGG+TGG | + | tig0024536:13534-13553 | None:intergenic | 40.0% | |
| GTACTTTATGCCATGTCAGA+AGG | - | tig0024536:13805-13824 | Msa1418110:intron | 40.0% | |
| ! | TTCCATGGTGTTTCTCCTTT+TGG | - | tig0024536:13890-13909 | Msa1418110:intron | 40.0% |
| GATAGCATGTCAAAGCCAAA+AGG | + | tig0024536:13908-13927 | None:intergenic | 40.0% | |
| ! | TATCATGTCACGGAGTATCT+GGG | - | tig0024536:14012-14031 | Msa1418110:CDS | 40.0% |
| TGAGGAGTTTGATCTCATCA+AGG | + | tig0024536:14140-14159 | None:intergenic | 40.0% | |
| CATTAGATACTGTCCTTCCT+AGG | - | tig0024536:14301-14320 | Msa1418110:CDS | 40.0% | |
| CTGATGAAATGCTTCCTTCG+TGG | - | tig0024536:13047-13066 | Msa1418110:CDS | 45.0% | |
| ATGAAATGCTTCCTTCGTGG+AGG | - | tig0024536:13050-13069 | Msa1418110:CDS | 45.0% | |
| CTTCACCCGAGAAAAGTTCT+AGG | - | tig0024536:13089-13108 | Msa1418110:CDS | 45.0% | |
| GGTAAGGCAAATAAAGGCTC+AGG | - | tig0024536:13294-13313 | Msa1418110:intron | 45.0% | |
| AAGGCAAATAAAGGCTCAGG+AGG | - | tig0024536:13297-13316 | Msa1418110:intron | 45.0% | |
| ! | GTTGTTTGTGCTTGCTAGTG+TGG | + | tig0024536:13603-13622 | None:intergenic | 45.0% |
| GTTCATTGAGCCTTCTGACA+TGG | + | tig0024536:13818-13837 | None:intergenic | 45.0% | |
| AGCCAAAAGGAGAAACACCA+TGG | + | tig0024536:13895-13914 | None:intergenic | 45.0% | |
| !! | GTTCAGAACTGGCTTTGAAG+AGG | - | tig0024536:13945-13964 | Msa1418110:CDS | 45.0% |
| ! | CTATCATGTCACGGAGTATC+TGG | - | tig0024536:14011-14030 | Msa1418110:CDS | 45.0% |
| CTGATGAAATGCTTCCTTCG+TGG | - | tig0024536:13047-13066 | Msa1418110:CDS | 45.0% | |
| ATGAAATGCTTCCTTCGTGG+AGG | - | tig0024536:13050-13069 | Msa1418110:CDS | 45.0% | |
| CTTCACCCGAGAAAAGTTCT+AGG | - | tig0024536:13089-13108 | Msa1418110:CDS | 45.0% | |
| GGTAAGGCAAATAAAGGCTC+AGG | - | tig0024536:13294-13313 | Msa1418110:intron | 45.0% | |
| AAGGCAAATAAAGGCTCAGG+AGG | - | tig0024536:13297-13316 | Msa1418110:intron | 45.0% | |
| ! | GTTGTTTGTGCTTGCTAGTG+TGG | + | tig0024536:13603-13622 | None:intergenic | 45.0% |
| GTTCATTGAGCCTTCTGACA+TGG | + | tig0024536:13818-13837 | None:intergenic | 45.0% | |
| AGCCAAAAGGAGAAACACCA+TGG | + | tig0024536:13895-13914 | None:intergenic | 45.0% | |
| !! | GTTCAGAACTGGCTTTGAAG+AGG | - | tig0024536:13945-13964 | Msa1418110:CDS | 45.0% |
| ! | CTATCATGTCACGGAGTATC+TGG | - | tig0024536:14011-14030 | Msa1418110:CDS | 45.0% |
| GATAGCCAGATGATTCAGGG+TGG | - | tig0024536:12947-12966 | Msa1418110:CDS | 50.0% | |
| AACCACCACCCTGAATCATC+TGG | + | tig0024536:12955-12974 | None:intergenic | 50.0% | |
| GTGGTTCCAGTAAGTTGCCA+TGG | - | tig0024536:12969-12988 | Msa1418110:CDS | 50.0% | |
| !! | CTACTTTTCTGCCTCCACGA+AGG | + | tig0024536:13064-13083 | None:intergenic | 50.0% |
| GCAAATAAAGGCTCAGGAGG+AGG | - | tig0024536:13300-13319 | Msa1418110:intron | 50.0% | |
| AGCTGGTCGCTATCATGTCA+CGG | - | tig0024536:14002-14021 | Msa1418110:CDS | 50.0% | |
| GATAGCCAGATGATTCAGGG+TGG | - | tig0024536:12947-12966 | Msa1418110:CDS | 50.0% | |
| AACCACCACCCTGAATCATC+TGG | + | tig0024536:12955-12974 | None:intergenic | 50.0% | |
| GTGGTTCCAGTAAGTTGCCA+TGG | - | tig0024536:12969-12988 | Msa1418110:CDS | 50.0% | |
| !! | CTACTTTTCTGCCTCCACGA+AGG | + | tig0024536:13064-13083 | None:intergenic | 50.0% |
| GCAAATAAAGGCTCAGGAGG+AGG | - | tig0024536:13300-13319 | Msa1418110:intron | 50.0% | |
| AGCTGGTCGCTATCATGTCA+CGG | - | tig0024536:14002-14021 | Msa1418110:CDS | 50.0% | |
| AGCCAGATGATTCAGGGTGG+TGG | - | tig0024536:12950-12969 | Msa1418110:CDS | 55.0% | |
| GATTGCTGCTGTGCAAGAGC+AGG | - | tig0024536:13273-13292 | Msa1418110:intron | 55.0% | |
| CTGCTGTGCAAGAGCAGGTA+AGG | - | tig0024536:13278-13297 | Msa1418110:intron | 55.0% | |
| CAAGCTCATGACCTGCACAC+AGG | - | tig0024536:14060-14079 | Msa1418110:CDS | 55.0% | |
| AAACATCCACGCCTGTGTGC+AGG | + | tig0024536:14074-14093 | None:intergenic | 55.0% | |
| AGCCAGATGATTCAGGGTGG+TGG | - | tig0024536:12950-12969 | Msa1418110:CDS | 55.0% | |
| GATTGCTGCTGTGCAAGAGC+AGG | - | tig0024536:13273-13292 | Msa1418110:intron | 55.0% | |
| CTGCTGTGCAAGAGCAGGTA+AGG | - | tig0024536:13278-13297 | Msa1418110:intron | 55.0% | |
| CAAGCTCATGACCTGCACAC+AGG | - | tig0024536:14060-14079 | Msa1418110:CDS | 55.0% | |
| AAACATCCACGCCTGTGTGC+AGG | + | tig0024536:14074-14093 | None:intergenic | 55.0% | |
| TCATGACCTGCACACAGGCG+TGG | - | tig0024536:14065-14084 | Msa1418110:CDS | 60.0% | |
| TCATGACCTGCACACAGGCG+TGG | - | tig0024536:14065-14084 | Msa1418110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024536 | gene | 12884 | 14332 | 12884 | ID=Msa1418110;Name=Msa1418110 |
| tig0024536 | mRNA | 12884 | 14332 | 12884 | ID=Msa1418110-mRNA-1;Parent=Msa1418110;Name=Msa1418110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.66|1|1|3|0|273 |
| tig0024536 | exon | 13922 | 14332 | 13922 | ID=Msa1418110-mRNA-1:exon:208;Parent=Msa1418110-mRNA-1 |
| tig0024536 | exon | 13398 | 13426 | 13398 | ID=Msa1418110-mRNA-1:exon:207;Parent=Msa1418110-mRNA-1 |
| tig0024536 | exon | 12884 | 13265 | 12884 | ID=Msa1418110-mRNA-1:exon:206;Parent=Msa1418110-mRNA-1 |
| tig0024536 | CDS | 13922 | 14332 | 13922 | ID=Msa1418110-mRNA-1:cds;Parent=Msa1418110-mRNA-1 |
| tig0024536 | CDS | 13398 | 13426 | 13398 | ID=Msa1418110-mRNA-1:cds;Parent=Msa1418110-mRNA-1 |
| tig0024536 | CDS | 12884 | 13265 | 12884 | ID=Msa1418110-mRNA-1:cds;Parent=Msa1418110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
