Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0896780 | XP_003620164.1 | 91.388 | 209 | 11 | 1 | 1 | 209 | 1 | 202 | 8.45e-135 | 386 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0896780 | sp|Q9FTA0|GEML4_ARATH | 48.663 | 187 | 94 | 1 | 20 | 206 | 31 | 215 | 5.86e-55 | 177 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0896780 | G7KKC8 | 91.388 | 209 | 11 | 1 | 1 | 209 | 1 | 202 | 4.04e-135 | 386 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0679670 | Msa0896780 | 0.800000 | 1.769423e-48 | -8.615850e-47 |
Msa0187310 | Msa0896780 | 0.807089 | 5.993816e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0896780 | MtrunA17_Chr6g0481891 | 91.388 | 209 | 11 | 1 | 1 | 209 | 1 | 202 | 7.77e-139 | 386 |
Msa0896780 | MtrunA17_Chr8g0388871 | 69.892 | 186 | 54 | 2 | 22 | 206 | 1 | 185 | 1.04e-89 | 261 |
Msa0896780 | MtrunA17_Chr1g0212091 | 48.515 | 202 | 104 | 0 | 3 | 204 | 18 | 219 | 2.84e-62 | 193 |
Msa0896780 | MtrunA17_Chr1g0162171 | 50.000 | 180 | 85 | 1 | 29 | 203 | 41 | 220 | 9.44e-59 | 184 |
Msa0896780 | MtrunA17_Chr1g0212181 | 45.500 | 200 | 96 | 2 | 4 | 203 | 29 | 215 | 1.12e-56 | 179 |
Msa0896780 | MtrunA17_Chr1g0212171 | 47.399 | 173 | 91 | 0 | 34 | 206 | 49 | 221 | 1.31e-54 | 173 |
Msa0896780 | MtrunA17_Chr1g0212121 | 46.154 | 195 | 101 | 2 | 13 | 206 | 27 | 218 | 1.01e-53 | 171 |
Msa0896780 | MtrunA17_Chr7g0251801 | 41.718 | 163 | 95 | 0 | 41 | 203 | 112 | 274 | 1.22e-42 | 145 |
Msa0896780 | MtrunA17_Chr1g0212111 | 56.637 | 113 | 49 | 0 | 96 | 208 | 47 | 159 | 4.59e-39 | 132 |
Msa0896780 | MtrunA17_Chr3g0133221 | 37.662 | 154 | 95 | 1 | 50 | 203 | 103 | 255 | 8.36e-39 | 134 |
Msa0896780 | MtrunA17_Chr8g0367701 | 37.107 | 159 | 99 | 1 | 45 | 203 | 110 | 267 | 2.76e-34 | 123 |
Msa0896780 | MtrunA17_Chr2g0315771 | 37.500 | 160 | 99 | 1 | 45 | 203 | 66 | 225 | 2.32e-31 | 114 |
Msa0896780 | MtrunA17_Chr1g0212131 | 53.571 | 56 | 26 | 0 | 148 | 203 | 6 | 61 | 4.17e-14 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0896780 | AT5G08350.1 | 48.663 | 187 | 94 | 1 | 20 | 206 | 31 | 215 | 5.96e-56 | 177 |
Msa0896780 | AT5G23370.1 | 50.526 | 190 | 91 | 2 | 20 | 208 | 31 | 218 | 7.14e-56 | 177 |
Msa0896780 | AT5G23360.1 | 48.913 | 184 | 85 | 1 | 20 | 203 | 31 | 205 | 6.57e-53 | 169 |
Msa0896780 | AT5G23350.1 | 50.000 | 182 | 88 | 2 | 23 | 203 | 34 | 213 | 3.86e-52 | 167 |
Msa0896780 | AT5G13200.1 | 40.252 | 159 | 95 | 0 | 45 | 203 | 102 | 260 | 3.91e-40 | 138 |
Msa0896780 | AT4G01600.3 | 37.931 | 174 | 107 | 1 | 32 | 204 | 13 | 186 | 4.99e-38 | 130 |
Msa0896780 | AT4G01600.1 | 40.373 | 161 | 95 | 1 | 45 | 204 | 65 | 225 | 1.13e-37 | 130 |
Msa0896780 | AT2G22475.1 | 36.875 | 160 | 98 | 2 | 45 | 203 | 134 | 291 | 1.49e-36 | 130 |
Msa0896780 | AT4G01600.2 | 43.243 | 148 | 83 | 1 | 58 | 204 | 73 | 220 | 2.31e-36 | 127 |
Msa0896780 | AT1G28200.1 | 38.037 | 163 | 99 | 2 | 41 | 203 | 94 | 254 | 1.23e-35 | 126 |
Msa0896780 | AT1G28200.2 | 38.037 | 163 | 99 | 2 | 41 | 203 | 94 | 254 | 1.23e-35 | 126 |
Msa0896780 | AT5G13200.2 | 41.509 | 106 | 62 | 0 | 45 | 150 | 102 | 207 | 7.97e-23 | 92.0 |
Msa0896780 | AT2G22475.2 | 34.188 | 117 | 74 | 2 | 45 | 160 | 134 | 248 | 7.98e-19 | 82.0 |
Find 31 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAGGATGGCTCTGAATTT+TGG | 0.191579 | 6_1:+87559426 | Msa0896780:CDS |
AAAATAATATATTTGCTAAT+TGG | 0.222651 | 6_1:-87557789 | None:intergenic |
GAATTTATTGGCCATGAAAA+TGG | 0.230364 | 6_1:-87559498 | None:intergenic |
CAGATAAAGAAAACTCAAAT+AGG | 0.238573 | 6_1:+87558069 | Msa0896780:intron |
AAAGCGGTTCTTACTTGTTA+TGG | 0.266422 | 6_1:-87557965 | None:intergenic |
CATACTCTGATGAAGTCTTT+TGG | 0.272298 | 6_1:+87557865 | Msa0896780:exon |
GTTATGGTTGCAGTGAAATT+AGG | 0.306142 | 6_1:+87558443 | Msa0896780:intron |
TTGAAGGGTAAGTTAAGTTT+AGG | 0.334682 | 6_1:+87558485 | Msa0896780:CDS |
CAAAAGACTTCATCAGAGTA+TGG | 0.356576 | 6_1:-87557864 | None:intergenic |
ACCACAGCTGGTCCTATTGC+TGG | 0.386738 | 6_1:+87558611 | Msa0896780:CDS |
TCTGCAGAATAGAAGCTTGT+AGG | 0.416048 | 6_1:-87558680 | None:intergenic |
GGTTTCAAGATTACTTTGTA+AGG | 0.428405 | 6_1:-87558722 | None:intergenic |
ATAAAGAGAATTCCAGCAAT+AGG | 0.429382 | 6_1:-87558623 | None:intergenic |
AGATAAAGAAAACTCAAATA+GGG | 0.461660 | 6_1:+87558070 | Msa0896780:intron |
TCTAGGAAAGTACTGAAGAA+AGG | 0.464281 | 6_1:-87557747 | None:intergenic |
ATATATAGAAGTAGTGACTA+AGG | 0.483276 | 6_1:+87559409 | Msa0896780:CDS |
ATGGAGGTTGAATCAGAAGT+TGG | 0.483557 | 6_1:-87557946 | None:intergenic |
GGTGCTAAAATTATTCAAGA+AGG | 0.492255 | 6_1:+87558506 | Msa0896780:CDS |
ATTATTCAAGAAGGTGGAAG+AGG | 0.509163 | 6_1:+87558515 | Msa0896780:CDS |
TGCTATTTATATACCACAGC+TGG | 0.515042 | 6_1:+87558599 | Msa0896780:CDS |
ACAAGCTTCTATTCTGCAGA+TGG | 0.530966 | 6_1:+87558683 | Msa0896780:CDS |
GCTAAAATTATTCAAGAAGG+TGG | 0.533103 | 6_1:+87558509 | Msa0896780:CDS |
ACCAATAGAGAAGATAAAAG+AGG | 0.549360 | 6_1:+87559349 | Msa0896780:CDS |
GCATATAGTATTCATGAACA+TGG | 0.551487 | 6_1:+87558122 | Msa0896780:CDS |
CAAATAGGGATTTCACAAGA+AGG | 0.555465 | 6_1:+87558084 | Msa0896780:CDS |
GCGGTTCTTACTTGTTATGG+AGG | 0.563314 | 6_1:-87557962 | None:intergenic |
AAATAGGGATTTCACAAGAA+GGG | 0.576471 | 6_1:+87558085 | Msa0896780:CDS |
CAAGCTTCTATTCTGCAGAT+GGG | 0.579988 | 6_1:+87558684 | Msa0896780:CDS |
ATAGAAGTAGTGACTAAGGA+TGG | 0.592266 | 6_1:+87559413 | Msa0896780:CDS |
TCCAGCAATAGGACCAGCTG+TGG | 0.636838 | 6_1:-87558612 | None:intergenic |
AAGCTTCTATTCTGCAGATG+GGG | 0.642873 | 6_1:+87558685 | Msa0896780:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATAATATATTTGCTAAT+TGG | - | chr6_1:87557792-87557811 | None:intergenic | 10.0% |
!!! | ATTATTTTTGTTATTGTTTT+TGG | + | chr6_1:87557804-87557823 | Msa0896780:five_prime_UTR | 10.0% |
!!! | ATCTATATTTTTTTTGTATT+TGG | - | chr6_1:87558350-87558369 | None:intergenic | 10.0% |
!!! | AGTTAAATTATTTTCATATA+AGG | - | chr6_1:87558900-87558919 | None:intergenic | 10.0% |
!! | TAAAGGAAAAAAAAAAAAAG+CGG | - | chr6_1:87557984-87558003 | None:intergenic | 15.0% |
!!! | ATATTTTTTTTGTATTTGGT+CGG | - | chr6_1:87558346-87558365 | None:intergenic | 15.0% |
!!! | TTATTTTCTCAAATTATTAC+CGG | + | chr6_1:87558381-87558400 | Msa0896780:intron | 15.0% |
!! | GATAAAAATTCTATGAATTA+AGG | - | chr6_1:87559279-87559298 | None:intergenic | 15.0% |
!! | GATGAAATGAAAGAAATTAA+AGG | - | chr6_1:87558001-87558020 | None:intergenic | 20.0% |
!! | TATACCAATAACAAAGTAAA+AGG | + | chr6_1:87558027-87558046 | Msa0896780:intron | 20.0% |
!!! | AAAACCTTTTACTTTGTTAT+TGG | - | chr6_1:87558034-87558053 | None:intergenic | 20.0% |
!! | AGATAAAGAAAACTCAAATA+GGG | + | chr6_1:87558070-87558089 | Msa0896780:intron | 20.0% |
!!! | AACATTTTCAAGCATATTTT+TGG | + | chr6_1:87558539-87558558 | Msa0896780:CDS | 20.0% |
!!! | ACATTTTCAAGCATATTTTT+GGG | + | chr6_1:87558540-87558559 | Msa0896780:CDS | 20.0% |
!! | AAATAAGCTAATCAAAACAT+AGG | - | chr6_1:87558764-87558783 | None:intergenic | 20.0% |
!! | ATAAGCTGAAAATAGTTTAT+GGG | - | chr6_1:87559118-87559137 | None:intergenic | 20.0% |
!! | AATAAGCTGAAAATAGTTTA+TGG | - | chr6_1:87559119-87559138 | None:intergenic | 20.0% |
!! | CTGTTATAAATAGCTTTTCT+AGG | - | chr6_1:87557767-87557786 | None:intergenic | 25.0% |
!!! | ATAACAAAAAAGCATCTACT+CGG | - | chr6_1:87557898-87557917 | None:intergenic | 25.0% |
!!! | TTTTGAGGAAATTATCATCA+TGG | - | chr6_1:87557924-87557943 | None:intergenic | 25.0% |
! | CAGATAAAGAAAACTCAAAT+AGG | + | chr6_1:87558069-87558088 | Msa0896780:intron | 25.0% |
! | TCAAACTTTCAATTCAATCA+AGG | + | chr6_1:87558188-87558207 | Msa0896780:intron | 25.0% |
! | AGATTGTGACATAATCATAA+CGG | - | chr6_1:87558230-87558249 | None:intergenic | 25.0% |
!!! | TAAATTTTCTGAGACTTTGA+AGG | + | chr6_1:87558469-87558488 | Msa0896780:CDS | 25.0% |
!!! | AAATTTTCTGAGACTTTGAA+GGG | + | chr6_1:87558470-87558489 | Msa0896780:CDS | 25.0% |
! | CTCAAACAGACAATAAAAAA+TGG | - | chr6_1:87558787-87558806 | None:intergenic | 25.0% |
!! | ACTTATTTGAGATTATCTAC+TGG | + | chr6_1:87559038-87559057 | Msa0896780:intron | 25.0% |
! | ATTGCATTGTTCTGATATAA+AGG | + | chr6_1:87559304-87559323 | Msa0896780:intron | 25.0% |
! | ATATATAGAAGTAGTGACTA+AGG | + | chr6_1:87559409-87559428 | Msa0896780:CDS | 25.0% |
AAATAGGGATTTCACAAGAA+GGG | + | chr6_1:87558085-87558104 | Msa0896780:CDS | 30.0% | |
GCATATAGTATTCATGAACA+TGG | + | chr6_1:87558122-87558141 | Msa0896780:CDS | 30.0% | |
AAATCTTTCATGTGAAGTGT+CGG | - | chr6_1:87558299-87558318 | None:intergenic | 30.0% | |
TTGAAGGGTAAGTTAAGTTT+AGG | + | chr6_1:87558485-87558504 | Msa0896780:CDS | 30.0% | |
GGTGCTAAAATTATTCAAGA+AGG | + | chr6_1:87558506-87558525 | Msa0896780:CDS | 30.0% | |
GCTAAAATTATTCAAGAAGG+TGG | + | chr6_1:87558509-87558528 | Msa0896780:CDS | 30.0% | |
ATAAAGAGAATTCCAGCAAT+AGG | - | chr6_1:87558626-87558645 | None:intergenic | 30.0% | |
! | GCAAAATGCAACTTTTACAT+TGG | - | chr6_1:87558651-87558670 | None:intergenic | 30.0% |
GGTTTCAAGATTACTTTGTA+AGG | - | chr6_1:87558725-87558744 | None:intergenic | 30.0% | |
ATAGGATTTGAGCTTAAAGT+TGG | - | chr6_1:87558746-87558765 | None:intergenic | 30.0% | |
! | AATAAGCGGAAAACAACTTT+TGG | - | chr6_1:87558839-87558858 | None:intergenic | 30.0% |
CTGTAGCTTATGAAAATAAG+CGG | - | chr6_1:87558853-87558872 | None:intergenic | 30.0% | |
TCAAATAAGTCAACTCAAAC+AGG | - | chr6_1:87559028-87559047 | None:intergenic | 30.0% | |
TTAAACTCTCACAAACAATC+TGG | - | chr6_1:87559076-87559095 | None:intergenic | 30.0% | |
TATAAAGGTTCTTGTAATGC+AGG | + | chr6_1:87559319-87559338 | Msa0896780:intron | 30.0% | |
ACCAATAGAGAAGATAAAAG+AGG | + | chr6_1:87559349-87559368 | Msa0896780:CDS | 30.0% | |
! | ACCTCTTTTATCTTCTCTAT+TGG | - | chr6_1:87559353-87559372 | None:intergenic | 30.0% |
!! | TTTGGTTCATGGGATTTTTA+AGG | + | chr6_1:87559444-87559463 | Msa0896780:CDS | 30.0% |
!!! | TCTCAATAATGCCATTTTCA+TGG | + | chr6_1:87559487-87559506 | Msa0896780:CDS | 30.0% |
GAATTTATTGGCCATGAAAA+TGG | - | chr6_1:87559501-87559520 | None:intergenic | 30.0% | |
!! | TCTAGGAAAGTACTGAAGAA+AGG | - | chr6_1:87557750-87557769 | None:intergenic | 35.0% |
CAAAAGACTTCATCAGAGTA+TGG | - | chr6_1:87557867-87557886 | None:intergenic | 35.0% | |
! | CATACTCTGATGAAGTCTTT+TGG | + | chr6_1:87557865-87557884 | Msa0896780:exon | 35.0% |
! | AATCAGAAGTTGGAGTTTTG+AGG | - | chr6_1:87557939-87557958 | None:intergenic | 35.0% |
! | AAAGCGGTTCTTACTTGTTA+TGG | - | chr6_1:87557968-87557987 | None:intergenic | 35.0% |
CAAATAGGGATTTCACAAGA+AGG | + | chr6_1:87558084-87558103 | Msa0896780:CDS | 35.0% | |
TGTGAATGAAACACTGAAAC+CGG | - | chr6_1:87558403-87558422 | None:intergenic | 35.0% | |
GTTATGGTTGCAGTGAAATT+AGG | + | chr6_1:87558443-87558462 | Msa0896780:intron | 35.0% | |
ATTATTCAAGAAGGTGGAAG+AGG | + | chr6_1:87558515-87558534 | Msa0896780:CDS | 35.0% | |
!!! | CATATTTTTGGGATGCAAGA+GGG | + | chr6_1:87558551-87558570 | Msa0896780:CDS | 35.0% |
! | TGCTATTTATATACCACAGC+TGG | + | chr6_1:87558599-87558618 | Msa0896780:CDS | 35.0% |
! | AAGTTGCATTTTGCAGTGAA+AGG | + | chr6_1:87558657-87558676 | Msa0896780:CDS | 35.0% |
!! | CGCTTATTTTCATAAGCTAC+AGG | + | chr6_1:87558851-87558870 | Msa0896780:intron | 35.0% |
ATAGAAGTAGTGACTAAGGA+TGG | + | chr6_1:87559413-87559432 | Msa0896780:CDS | 35.0% | |
!! | AAAAAAGCATCTACTCGGAG+AGG | - | chr6_1:87557893-87557912 | None:intergenic | 40.0% |
ATGGAGGTTGAATCAGAAGT+TGG | - | chr6_1:87557949-87557968 | None:intergenic | 40.0% | |
ATTCACAGTTGTTGACCTTG+TGG | + | chr6_1:87558416-87558435 | Msa0896780:intron | 40.0% | |
TTGACCTTGTGGTTGTGTTA+TGG | + | chr6_1:87558427-87558446 | Msa0896780:intron | 40.0% | |
!!! | GCATATTTTTGGGATGCAAG+AGG | + | chr6_1:87558550-87558569 | Msa0896780:CDS | 40.0% |
TCTGCAGAATAGAAGCTTGT+AGG | - | chr6_1:87558683-87558702 | None:intergenic | 40.0% | |
ACAAGCTTCTATTCTGCAGA+TGG | + | chr6_1:87558683-87558702 | Msa0896780:CDS | 40.0% | |
CAAGCTTCTATTCTGCAGAT+GGG | + | chr6_1:87558684-87558703 | Msa0896780:CDS | 40.0% | |
AAGCTTCTATTCTGCAGATG+GGG | + | chr6_1:87558685-87558704 | Msa0896780:CDS | 40.0% | |
TGTTTACTCAACCAAAGCCT+TGG | + | chr6_1:87559000-87559019 | Msa0896780:intron | 40.0% | |
GTTTACTCAACCAAAGCCTT+GGG | + | chr6_1:87559001-87559020 | Msa0896780:intron | 40.0% | |
AGCTTATTTCCACAAGCTCT+CGG | + | chr6_1:87559131-87559150 | Msa0896780:intron | 40.0% | |
!!! | CTAAGGATGGCTCTGAATTT+TGG | + | chr6_1:87559426-87559445 | Msa0896780:CDS | 40.0% |
!!! | TGGCTCTGAATTTTGGTTCA+TGG | + | chr6_1:87559433-87559452 | Msa0896780:CDS | 40.0% |
!!! | GGCTCTGAATTTTGGTTCAT+GGG | + | chr6_1:87559434-87559453 | Msa0896780:CDS | 40.0% |
!! | GCGGTTCTTACTTGTTATGG+AGG | - | chr6_1:87557965-87557984 | None:intergenic | 45.0% |
!! | TTGGTCGGTGTCACACATAT+TGG | - | chr6_1:87558331-87558350 | None:intergenic | 45.0% |
GCAACCATAACACAACCACA+AGG | - | chr6_1:87558434-87558453 | None:intergenic | 45.0% | |
! | AAGCTATTTCCGAGAGCTTG+TGG | - | chr6_1:87559143-87559162 | None:intergenic | 45.0% |
TCAAACAGGTCCCAAGGCTT+TGG | - | chr6_1:87559014-87559033 | None:intergenic | 50.0% | |
GTCAACTCAAACAGGTCCCA+AGG | - | chr6_1:87559020-87559039 | None:intergenic | 50.0% | |
ACCACAGCTGGTCCTATTGC+TGG | + | chr6_1:87558611-87558630 | Msa0896780:CDS | 55.0% | |
TCCAGCAATAGGACCAGCTG+TGG | - | chr6_1:87558615-87558634 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 87557747 | 87559523 | 87557747 | ID=Msa0896780;Name=Msa0896780 |
chr6_1 | mRNA | 87557747 | 87559523 | 87557747 | ID=Msa0896780-mRNA-1;Parent=Msa0896780;Name=Msa0896780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=127|1|0.75|1|1|1|4|0|209 |
chr6_1 | exon | 87557747 | 87557973 | 87557747 | ID=Msa0896780-mRNA-1:exon:14794;Parent=Msa0896780-mRNA-1 |
chr6_1 | exon | 87558072 | 87558143 | 87558072 | ID=Msa0896780-mRNA-1:exon:14795;Parent=Msa0896780-mRNA-1 |
chr6_1 | exon | 87558456 | 87558730 | 87558456 | ID=Msa0896780-mRNA-1:exon:14796;Parent=Msa0896780-mRNA-1 |
chr6_1 | exon | 87559341 | 87559523 | 87559341 | ID=Msa0896780-mRNA-1:exon:14797;Parent=Msa0896780-mRNA-1 |
chr6_1 | five_prime_UTR | 87557747 | 87557873 | 87557747 | ID=Msa0896780-mRNA-1:five_prime_utr;Parent=Msa0896780-mRNA-1 |
chr6_1 | CDS | 87557874 | 87557973 | 87557874 | ID=Msa0896780-mRNA-1:cds;Parent=Msa0896780-mRNA-1 |
chr6_1 | CDS | 87558072 | 87558143 | 87558072 | ID=Msa0896780-mRNA-1:cds;Parent=Msa0896780-mRNA-1 |
chr6_1 | CDS | 87558456 | 87558730 | 87558456 | ID=Msa0896780-mRNA-1:cds;Parent=Msa0896780-mRNA-1 |
chr6_1 | CDS | 87559341 | 87559523 | 87559341 | ID=Msa0896780-mRNA-1:cds;Parent=Msa0896780-mRNA-1 |
Gene Sequence |
Protein sequence |