Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897680 | XP_003620380.2 | 93.274 | 223 | 10 | 3 | 1 | 218 | 1 | 223 | 1.15e-103 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897680 | sp|Q5PNZ7|HIP46_ARATH | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 1.39e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897680 | A0A396HJD0 | 93.274 | 223 | 10 | 3 | 1 | 218 | 1 | 223 | 5.50e-104 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055730 | Msa0897680 | 0.811064 | 8.439568e-51 | -8.615850e-47 |
| Msa0897680 | Msa0991980 | 0.893959 | 3.865576e-75 | -8.615850e-47 |
| Msa0897680 | Msa1111750 | 0.801394 | 9.190860e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897680 | MtrunA17_Chr6g0483521 | 93.274 | 223 | 10 | 3 | 1 | 218 | 1 | 223 | 1.06e-107 | 308 |
| Msa0897680 | MtrunA17_Chr6g0483561 | 68.376 | 234 | 57 | 6 | 1 | 218 | 1 | 233 | 2.31e-72 | 219 |
| Msa0897680 | MtrunA17_Chr6g0483581 | 66.953 | 233 | 62 | 4 | 1 | 218 | 1 | 233 | 6.53e-69 | 211 |
| Msa0897680 | MtrunA17_Chr6g0483511 | 65.500 | 200 | 51 | 6 | 1 | 198 | 1 | 184 | 9.86e-65 | 198 |
| Msa0897680 | MtrunA17_Chr5g0438551 | 50.000 | 92 | 43 | 2 | 3 | 91 | 2 | 93 | 3.42e-19 | 80.1 |
| Msa0897680 | MtrunA17_Chr2g0290831 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 3.52e-19 | 78.6 |
| Msa0897680 | MtrunA17_Chr3g0120551 | 48.000 | 75 | 39 | 0 | 2 | 76 | 3 | 77 | 6.73e-19 | 79.0 |
| Msa0897680 | MtrunA17_Chr3g0120541 | 48.148 | 81 | 41 | 1 | 2 | 82 | 3 | 82 | 4.33e-17 | 74.3 |
| Msa0897680 | MtrunA17_Chr3g0120531 | 47.887 | 71 | 36 | 1 | 2 | 71 | 3 | 73 | 1.33e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897680 | AT3G20180.3 | 50.000 | 82 | 41 | 0 | 1 | 82 | 1 | 82 | 6.65e-18 | 77.0 |
| Msa0897680 | AT3G20180.2 | 47.561 | 82 | 43 | 0 | 1 | 82 | 20 | 101 | 6.99e-17 | 74.7 |
| Msa0897680 | AT3G20180.4 | 48.101 | 79 | 41 | 0 | 4 | 82 | 2 | 80 | 9.90e-16 | 71.2 |
| Msa0897680 | AT4G05030.2 | 45.946 | 74 | 40 | 0 | 1 | 74 | 1 | 74 | 1.02e-15 | 69.7 |
| Msa0897680 | AT5G48290.1 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 1.42e-15 | 72.4 |
| Msa0897680 | AT3G20180.1 | 48.684 | 76 | 39 | 0 | 7 | 82 | 3 | 78 | 1.81e-15 | 70.5 |
| Msa0897680 | AT4G05030.1 | 46.479 | 71 | 38 | 0 | 4 | 74 | 37 | 107 | 1.23e-14 | 67.8 |
| Msa0897680 | AT3G07600.1 | 43.678 | 87 | 49 | 0 | 1 | 87 | 1 | 87 | 2.32e-14 | 68.6 |
| Msa0897680 | AT5G48290.2 | 36.585 | 82 | 52 | 0 | 11 | 92 | 1 | 82 | 4.99e-11 | 59.7 |
Find 50 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTGAAGGAGGCTTCTT+AGG | 0.245817 | 6_1:+90061340 | None:intergenic |
| TCATAACAAACCATGTAATT+AGG | 0.276014 | 6_1:+90061232 | None:intergenic |
| TTACACTCACAACAACTCTT+TGG | 0.313053 | 6_1:+90061403 | None:intergenic |
| TTATAATAAACTGCATAATT+AGG | 0.314518 | 6_1:-90060870 | None:intergenic |
| AAATTTAGTGATTAAAGAAT+TGG | 0.317850 | 6_1:-90061029 | Msa0897680:three_prime_UTR |
| TTCTTGTTGTCACAACAATT+AGG | 0.340817 | 6_1:+90061379 | None:intergenic |
| GGGTTACAATAAGGTTGATA+TGG | 0.373315 | 6_1:+90061265 | None:intergenic |
| CACATGATGGAGCAAGGTTC+AGG | 0.380976 | 6_1:-90060900 | Msa0897680:three_prime_UTR |
| CACATGATGGAGCAAGGTTC+AGG | 0.380976 | 6_1:+90061202 | None:intergenic |
| TTCAATAAAATTTGCAAGCA+TGG | 0.382108 | 6_1:-90061163 | Msa0897680:three_prime_UTR |
| GATAGTTATAAAGTTGCAAA+TGG | 0.417360 | 6_1:-90063034 | Msa0897680:CDS |
| GGTGGACAAGGGTTACAATA+AGG | 0.425446 | 6_1:+90061256 | None:intergenic |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_1:+90060938 | None:intergenic |
| CTTCTGCTTTGAAATTGAGC+TGG | 0.432123 | 6_1:+90063271 | None:intergenic |
| GGAGCATAACCATAGCATCT+AGG | 0.436864 | 6_1:+90061286 | None:intergenic |
| CACCTCTTCCACACTTAGAA+TGG | 0.439561 | 6_1:+90061636 | None:intergenic |
| AGGTGTGACTTCAGTATCAT+TGG | 0.462204 | 6_1:-90061752 | Msa0897680:CDS |
| CTTGCTCCATCATGTGAGTA+AGG | 0.472237 | 6_1:+90060907 | None:intergenic |
| TTAATGACAGAATTAGATAG+AGG | 0.473275 | 6_1:+90061050 | None:intergenic |
| GAGCATAACCATAGCATCTA+GGG | 0.480309 | 6_1:+90061287 | None:intergenic |
| TTGTCCACCACCTAATTACA+TGG | 0.486023 | 6_1:-90061242 | Msa0897680:CDS |
| CTTGCTCCATCATGTGAGTA+AGG | 0.486812 | 6_1:-90061195 | Msa0897680:exon |
| AAGTGTGGAAGAGGTGAAGA+AGG | 0.488488 | 6_1:-90061629 | Msa0897680:CDS |
| TGCACCATTGTGGACATTGT+TGG | 0.497357 | 6_1:+90061314 | None:intergenic |
| CACCATTCTAAGTGTGGAAG+AGG | 0.501486 | 6_1:-90061638 | Msa0897680:CDS |
| ATGTAATTAGGTGGTGGACA+AGG | 0.503735 | 6_1:+90061244 | None:intergenic |
| GTGTTTGTTTCAATTAAGCT+AGG | 0.504012 | 6_1:-90063202 | Msa0897680:five_prime_UTR |
| TTTCAATTAAGCTAGGATGA+AGG | 0.511613 | 6_1:-90063195 | Msa0897680:intron |
| TCTTGCAACACTCATTGTAA+TGG | 0.531057 | 6_1:-90061505 | Msa0897680:CDS |
| AAATTGAGCTGGTTGTACAT+AGG | 0.539972 | 6_1:+90063282 | None:intergenic |
| CATAGTCCTTACTCACATGA+TGG | 0.541420 | 6_1:-90060913 | Msa0897680:three_prime_UTR |
| CATTGTCCTTACTCACATGA+TGG | 0.547681 | 6_1:+90061189 | None:intergenic |
| AACTGTGTCTACATTATCAC+CGG | 0.572592 | 6_1:+90061699 | None:intergenic |
| AGCACTCAAAACTGCTGCTG+AGG | 0.581320 | 6_1:-90062989 | Msa0897680:CDS |
| CTAGGGCATGTGCACCATTG+TGG | 0.581564 | 6_1:+90061304 | None:intergenic |
| AAAACTGCTGCTGAGGTCAA+AGG | 0.586105 | 6_1:-90062982 | Msa0897680:intron |
| TGTAATTAGGTGGTGGACAA+GGG | 0.591913 | 6_1:+90061245 | None:intergenic |
| TGCACATGCCCTAGATGCTA+TGG | 0.604526 | 6_1:-90061295 | Msa0897680:CDS |
| CAAACCATGTAATTAGGTGG+TGG | 0.618822 | 6_1:+90061238 | None:intergenic |
| CTGTGTCACCATTCTAAGTG+TGG | 0.620030 | 6_1:-90061644 | Msa0897680:CDS |
| GTGACTTCAGTATCATTGGA+AGG | 0.626567 | 6_1:-90061748 | Msa0897680:CDS |
| AAAGATAAGATATCTGTCAC+CGG | 0.627820 | 6_1:-90061718 | Msa0897680:CDS |
| TAACAAACCATGTAATTAGG+TGG | 0.633123 | 6_1:+90061235 | None:intergenic |
| TTAGTGATGAAAATATTGAG+AGG | 0.644354 | 6_1:-90061088 | Msa0897680:three_prime_UTR |
| CTTACTCACATGATGGAGCA+AGG | 0.646295 | 6_1:+90061196 | None:intergenic |
| CTTACTCACATGATGGAGCA+AGG | 0.648735 | 6_1:-90060906 | Msa0897680:three_prime_UTR |
| AGAGGTGAAGAAGGAAACCG+AGG | 0.666264 | 6_1:-90061620 | Msa0897680:CDS |
| TGTGGAAGTGCAAAATGTGA+TGG | 0.668591 | 6_1:-90061463 | Msa0897680:CDS |
| TGTGACAACAAGAAGTGTGA+TGG | 0.683170 | 6_1:-90061370 | Msa0897680:CDS |
| AAATCCAACAATGTCCACAA+TGG | 0.683825 | 6_1:-90061318 | Msa0897680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAGATTTTTTTTTTTTTTT+TGG | - | chr6_1:90060917-90060936 | Msa0897680:three_prime_UTR | 10.0% |
| !!! | ATTTTTTTTTTTTTTTTGGA+AGG | - | chr6_1:90060921-90060940 | Msa0897680:three_prime_UTR | 10.0% |
| !!! | TAAAACAAAATTTTGATTTA+AGG | - | chr6_1:90061595-90061614 | Msa0897680:CDS | 10.0% |
| !!! | AAAACAAAATTTTGATTTAA+GGG | - | chr6_1:90061596-90061615 | Msa0897680:CDS | 10.0% |
| !!! | AATTTTTTCTAATGATTTTT+TGG | + | chr6_1:90062150-90062169 | None:intergenic | 10.0% |
| !! | TGAATTATGGATTTAAATTA+TGG | - | chr6_1:90061400-90061419 | Msa0897680:CDS | 15.0% |
| !! | GAATTATGGATTTAAATTAT+GGG | - | chr6_1:90061401-90061420 | Msa0897680:CDS | 15.0% |
| !!! | AAACAAAATTTTGATTTAAG+GGG | - | chr6_1:90061597-90061616 | Msa0897680:CDS | 15.0% |
| !!! | GTTGTTTTGATATTAATTTT+AGG | + | chr6_1:90061880-90061899 | None:intergenic | 15.0% |
| !! | AAATTTAGTGATTAAAGAAT+TGG | - | chr6_1:90063301-90063320 | Msa0897680:five_prime_UTR | 15.0% |
| !! | ATTCAAACAAATATAGTGAT+TGG | + | chr6_1:90061385-90061404 | None:intergenic | 20.0% |
| !! | CACTATATTTGTTTGAATTA+TGG | - | chr6_1:90061387-90061406 | Msa0897680:CDS | 20.0% |
| !! | TACAGTAAAATGTAGTTAAT+GGG | + | chr6_1:90061501-90061520 | None:intergenic | 20.0% |
| !! | TTACAGTAAAATGTAGTTAA+TGG | + | chr6_1:90061502-90061521 | None:intergenic | 20.0% |
| !! | ACAAAATAATTATGGAAAAC+CGG | + | chr6_1:90061624-90061643 | None:intergenic | 20.0% |
| !! | AAAATCATGAGATTTATTGA+GGG | + | chr6_1:90061677-90061696 | None:intergenic | 20.0% |
| !! | TATAATTATATATGTGTGTG+AGG | - | chr6_1:90061963-90061982 | Msa0897680:intron | 20.0% |
| !! | ATAATTATATATGTGTGTGA+GGG | - | chr6_1:90061964-90061983 | Msa0897680:intron | 20.0% |
| ! | GATAGTTATAAAGTTGCAAA+TGG | - | chr6_1:90061296-90061315 | Msa0897680:CDS | 25.0% |
| !!! | CAAACTATGGTTTTAAATTC+CGG | + | chr6_1:90061551-90061570 | None:intergenic | 25.0% |
| !!! | TCCATAATTATTTTGTTCTC+AGG | - | chr6_1:90061628-90061647 | Msa0897680:CDS | 25.0% |
| ! | ACCTGAGAACAAAATAATTA+TGG | + | chr6_1:90061632-90061651 | None:intergenic | 25.0% |
| ! | GAAAATCATGAGATTTATTG+AGG | + | chr6_1:90061678-90061697 | None:intergenic | 25.0% |
| !!! | TGTTTTTGGTTGTAGATTAT+AGG | - | chr6_1:90061724-90061743 | Msa0897680:CDS | 25.0% |
| ! | GTGTGACAAAAATAACTTAA+AGG | - | chr6_1:90061753-90061772 | Msa0897680:CDS | 25.0% |
| ! | GTTACAAATCTCAAACTTAA+AGG | - | chr6_1:90061784-90061803 | Msa0897680:intron | 25.0% |
| ! | TGTAATATATTGGTCCTTTA+AGG | + | chr6_1:90061822-90061841 | None:intergenic | 25.0% |
| !! | GTTTGAGGTTTGTAATATAT+TGG | + | chr6_1:90061832-90061851 | None:intergenic | 25.0% |
| ! | CAAAACAACGACATAATTAT+TGG | - | chr6_1:90061891-90061910 | Msa0897680:intron | 25.0% |
| ! | ATGTGTACATATAAGTTAAC+AGG | - | chr6_1:90062084-90062103 | Msa0897680:intron | 25.0% |
| !!! | GATTTTTTGGTTCTGTTTTT+TGG | + | chr6_1:90062137-90062156 | None:intergenic | 25.0% |
| ! | TCAAATAACATATCTGATTG+TGG | + | chr6_1:90062344-90062363 | None:intergenic | 25.0% |
| !! | CCTATATATGCATGTATTTT+TGG | + | chr6_1:90062561-90062580 | None:intergenic | 25.0% |
| ! | CCAAAAATACATGCATATAT+AGG | - | chr6_1:90062558-90062577 | Msa0897680:intron | 25.0% |
| !!! | TTCTTTCTTTTTTTCTTCCT+CGG | + | chr6_1:90062730-90062749 | None:intergenic | 25.0% |
| ! | TCATAACAAACCATGTAATT+AGG | + | chr6_1:90063101-90063120 | None:intergenic | 25.0% |
| !! | TGCTTGCAAATTTTATTGAA+AGG | + | chr6_1:90063395-90063414 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_1:90063167-90063186 | Msa0897680:intron | 25.0% |
| ! | TTAGTGATGAAAATATTGAG+AGG | - | chr6_1:90063242-90063261 | Msa0897680:five_prime_UTR | 25.0% |
| ! | TTAATGACAGAATTAGATAG+AGG | + | chr6_1:90063283-90063302 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | + | chr6_1:90063167-90063186 | None:intergenic | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | - | chr6_1:90063394-90063413 | Msa0897680:five_prime_UTR | 25.0% |
| !! | CATTGTCATTGTTTTGTGAA+AGG | + | chr6_1:90060965-90060984 | None:intergenic | 30.0% |
| ! | AAACACCAACTTTTTGTGAT+TGG | + | chr6_1:90061114-90061133 | None:intergenic | 30.0% |
| GTGTTTGTTTCAATTAAGCT+AGG | - | chr6_1:90061128-90061147 | Msa0897680:three_prime_UTR | 30.0% | |
| TTTCAATTAAGCTAGGATGA+AGG | - | chr6_1:90061135-90061154 | Msa0897680:three_prime_UTR | 30.0% | |
| ATGGGATCAAAATTGCAATT+GGG | + | chr6_1:90061483-90061502 | None:intergenic | 30.0% | |
| AATGGGATCAAAATTGCAAT+TGG | + | chr6_1:90061484-90061503 | None:intergenic | 30.0% | |
| TCTAACTACAAAGCAAACTA+TGG | + | chr6_1:90061564-90061583 | None:intergenic | 30.0% | |
| TTTGCTTTGTAGTTAGAAGT+AGG | - | chr6_1:90061567-90061586 | Msa0897680:CDS | 30.0% | |
| !!! | AAATTTTGATTTAAGGGGAC+CGG | - | chr6_1:90061602-90061621 | Msa0897680:CDS | 30.0% |
| ! | GTAAACTCTCATTCTGTTTT+TGG | - | chr6_1:90061710-90061729 | Msa0897680:CDS | 30.0% |
| ! | GTTTGAGATTTGTAACAGAT+TGG | + | chr6_1:90061780-90061799 | None:intergenic | 30.0% |
| TTTAGGCTAAATTACACTTG+AGG | + | chr6_1:90061863-90061882 | None:intergenic | 30.0% | |
| AAAGATAAGATATCTGTCAC+CGG | - | chr6_1:90062612-90062631 | Msa0897680:intron | 30.0% | |
| AGAAGAAGTGAAAAAGATGA+TGG | - | chr6_1:90062767-90062786 | Msa0897680:intron | 30.0% | |
| ! | TTCTTGTTGTCACAACAATT+AGG | + | chr6_1:90062954-90062973 | None:intergenic | 30.0% |
| TAACAAACCATGTAATTAGG+TGG | + | chr6_1:90063098-90063117 | None:intergenic | 30.0% | |
| AAATTGAGCTGGTTGTACAT+AGG | + | chr6_1:90061051-90061070 | None:intergenic | 35.0% | |
| TGTGTCCAATCACAAAAAGT+TGG | - | chr6_1:90061106-90061125 | Msa0897680:three_prime_UTR | 35.0% | |
| GGATTTATGTGTGACCTTAA+AGG | - | chr6_1:90061805-90061824 | Msa0897680:intron | 35.0% | |
| CTTGAGGTTCTATAAGTTTG+AGG | + | chr6_1:90061847-90061866 | None:intergenic | 35.0% | |
| ACAATCAATCATGCTTGTGT+GGG | + | chr6_1:90061990-90062009 | None:intergenic | 35.0% | |
| ACACAACTTTAAGTCTTCTG+TGG | - | chr6_1:90062057-90062076 | Msa0897680:intron | 35.0% | |
| AACTGTGTCTACATTATCAC+CGG | + | chr6_1:90062634-90062653 | None:intergenic | 35.0% | |
| !! | GAACTTTTTCTTCAGCATGT+TGG | + | chr6_1:90062664-90062683 | None:intergenic | 35.0% |
| TCTTGCAACACTCATTGTAA+TGG | - | chr6_1:90062825-90062844 | Msa0897680:intron | 35.0% | |
| AAGTGTGAAAAATGCACATG+TGG | - | chr6_1:90062849-90062868 | Msa0897680:intron | 35.0% | |
| TTACACTCACAACAACTCTT+TGG | + | chr6_1:90062930-90062949 | None:intergenic | 35.0% | |
| !!! | CATTGTTGGATTTTTGGTGA+AGG | + | chr6_1:90063005-90063024 | None:intergenic | 35.0% |
| ! | TGTGGACATTGTTGGATTTT+TGG | + | chr6_1:90063011-90063030 | None:intergenic | 35.0% |
| AAATCCAACAATGTCCACAA+TGG | - | chr6_1:90063012-90063031 | Msa0897680:CDS | 35.0% | |
| !! | GGGTTACAATAAGGTTGATA+TGG | + | chr6_1:90063068-90063087 | None:intergenic | 35.0% |
| !! | CTTCTGCTTTGAAATTGAGC+TGG | + | chr6_1:90061062-90061081 | None:intergenic | 40.0% |
| ATTTGCAGCGTAACGTTAAC+CGG | - | chr6_1:90061529-90061548 | Msa0897680:CDS | 40.0% | |
| GCTTTGTAGTTAGAAGTAGG+AGG | - | chr6_1:90061570-90061589 | Msa0897680:CDS | 40.0% | |
| CACAATCAATCATGCTTGTG+TGG | + | chr6_1:90061991-90062010 | None:intergenic | 40.0% | |
| !! | GAAGAAGCACTAGCTAAAAC+TGG | + | chr6_1:90062511-90062530 | None:intergenic | 40.0% |
| AGGTGTGACTTCAGTATCAT+TGG | - | chr6_1:90062578-90062597 | Msa0897680:intron | 40.0% | |
| GTGACTTCAGTATCATTGGA+AGG | - | chr6_1:90062582-90062601 | Msa0897680:intron | 40.0% | |
| !! | GCATGTCGTACTGTTTTGTT+TGG | - | chr6_1:90062792-90062811 | Msa0897680:intron | 40.0% |
| ! | TGTGGAAGTGCAAAATGTGA+TGG | - | chr6_1:90062867-90062886 | Msa0897680:intron | 40.0% |
| ! | TGTGACAACAAGAAGTGTGA+TGG | - | chr6_1:90062960-90062979 | Msa0897680:intron | 40.0% |
| !!! | TGTTGGATTTTTGGTGAAGG+AGG | + | chr6_1:90063002-90063021 | None:intergenic | 40.0% |
| GAGCATAACCATAGCATCTA+GGG | + | chr6_1:90063046-90063065 | None:intergenic | 40.0% | |
| !! | TGTAATTAGGTGGTGGACAA+GGG | + | chr6_1:90063088-90063107 | None:intergenic | 40.0% |
| !! | ATGTAATTAGGTGGTGGACA+AGG | + | chr6_1:90063089-90063108 | None:intergenic | 40.0% |
| TTGTCCACCACCTAATTACA+TGG | - | chr6_1:90063088-90063107 | Msa0897680:intron | 40.0% | |
| CAAACCATGTAATTAGGTGG+TGG | + | chr6_1:90063095-90063114 | None:intergenic | 40.0% | |
| CATTGTCCTTACTCACATGA+TGG | + | chr6_1:90063144-90063163 | None:intergenic | 40.0% | |
| CATAGTCCTTACTCACATGA+TGG | - | chr6_1:90063417-90063436 | Msa0897680:five_prime_UTR | 40.0% | |
| AAAACTGCTGCTGAGGTCAA+AGG | - | chr6_1:90061348-90061367 | Msa0897680:CDS | 45.0% | |
| AGACTGCGAAATCCGCAATA+TGG | + | chr6_1:90061448-90061467 | None:intergenic | 45.0% | |
| CTGTGTCACCATTCTAAGTG+TGG | - | chr6_1:90062686-90062705 | Msa0897680:intron | 45.0% | |
| CACCATTCTAAGTGTGGAAG+AGG | - | chr6_1:90062692-90062711 | Msa0897680:intron | 45.0% | |
| CACCTCTTCCACACTTAGAA+TGG | + | chr6_1:90062697-90062716 | None:intergenic | 45.0% | |
| AAGTGTGGAAGAGGTGAAGA+AGG | - | chr6_1:90062701-90062720 | Msa0897680:intron | 45.0% | |
| TTTGGTGAAGGAGGCTTCTT+AGG | + | chr6_1:90062993-90063012 | None:intergenic | 45.0% | |
| TGCACCATTGTGGACATTGT+TGG | + | chr6_1:90063019-90063038 | None:intergenic | 45.0% | |
| GGAGCATAACCATAGCATCT+AGG | + | chr6_1:90063047-90063066 | None:intergenic | 45.0% | |
| GGTGGACAAGGGTTACAATA+AGG | + | chr6_1:90063077-90063096 | None:intergenic | 45.0% | |
| ! | CTTACTCACATGATGGAGCA+AGG | + | chr6_1:90063424-90063443 | None:intergenic | 45.0% |
| CTTGCTCCATCATGTGAGTA+AGG | - | chr6_1:90063135-90063154 | Msa0897680:intron | 45.0% | |
| CTTGCTCCATCATGTGAGTA+AGG | + | chr6_1:90063135-90063154 | None:intergenic | 45.0% | |
| ! | CTTACTCACATGATGGAGCA+AGG | - | chr6_1:90063424-90063443 | Msa0897680:five_prime_UTR | 45.0% |
| AGCACTCAAAACTGCTGCTG+AGG | - | chr6_1:90061341-90061360 | Msa0897680:CDS | 50.0% | |
| CAATATGGTGGTCCCAACTG+CGG | + | chr6_1:90061433-90061452 | None:intergenic | 50.0% | |
| CAGTTGGGACCACCATATTG+CGG | - | chr6_1:90061433-90061452 | Msa0897680:CDS | 50.0% | |
| CTGCGAAATCCGCAATATGG+TGG | + | chr6_1:90061445-90061464 | None:intergenic | 50.0% | |
| AGAGGTGAAGAAGGAAACCG+AGG | - | chr6_1:90062710-90062729 | Msa0897680:intron | 50.0% | |
| TGCACATGCCCTAGATGCTA+TGG | - | chr6_1:90063035-90063054 | Msa0897680:CDS | 50.0% | |
| ! | CACATGATGGAGCAAGGTTC+AGG | + | chr6_1:90063430-90063449 | None:intergenic | 50.0% |
| ! | CACATGATGGAGCAAGGTTC+AGG | - | chr6_1:90063430-90063449 | Msa0897680:five_prime_UTR | 50.0% |
| ! | TTATGGGCTGCAACCGCAGT+TGG | - | chr6_1:90061417-90061436 | Msa0897680:CDS | 55.0% |
| ! | TATGGGCTGCAACCGCAGTT+GGG | - | chr6_1:90061418-90061437 | Msa0897680:CDS | 55.0% |
| CTAGGGCATGTGCACCATTG+TGG | + | chr6_1:90063029-90063048 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 90060872 | 90063480 | 90060872 | ID=Msa0897680;Name=Msa0897680 |
| chr6_1 | mRNA | 90060872 | 90063480 | 90060872 | ID=Msa0897680-mRNA-1;Parent=Msa0897680;Name=Msa0897680-mRNA-1;_AED=0.30;_eAED=0.30;_QI=279|1|1|1|0.5|0.33|3|329|218 |
| chr6_1 | exon | 90060872 | 90061772 | 90060872 | ID=Msa0897680-mRNA-1:exon:15329;Parent=Msa0897680-mRNA-1 |
| chr6_1 | exon | 90062983 | 90063061 | 90062983 | ID=Msa0897680-mRNA-1:exon:15328;Parent=Msa0897680-mRNA-1 |
| chr6_1 | exon | 90063196 | 90063480 | 90063196 | ID=Msa0897680-mRNA-1:exon:15327;Parent=Msa0897680-mRNA-1 |
| chr6_1 | five_prime_UTR | 90063202 | 90063480 | 90063202 | ID=Msa0897680-mRNA-1:five_prime_utr;Parent=Msa0897680-mRNA-1 |
| chr6_1 | CDS | 90063196 | 90063201 | 90063196 | ID=Msa0897680-mRNA-1:cds;Parent=Msa0897680-mRNA-1 |
| chr6_1 | CDS | 90062983 | 90063061 | 90062983 | ID=Msa0897680-mRNA-1:cds;Parent=Msa0897680-mRNA-1 |
| chr6_1 | CDS | 90061201 | 90061772 | 90061201 | ID=Msa0897680-mRNA-1:cds;Parent=Msa0897680-mRNA-1 |
| chr6_1 | three_prime_UTR | 90060872 | 90061200 | 90060872 | ID=Msa0897680-mRNA-1:three_prime_utr;Parent=Msa0897680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
