Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991980 | XP_003620380.2 | 92.377 | 223 | 12 | 3 | 1 | 218 | 1 | 223 | 2.39e-103 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991980 | sp|Q5PNZ7|HIP46_ARATH | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 4.83e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991980 | A0A396HJD0 | 92.377 | 223 | 12 | 3 | 1 | 218 | 1 | 223 | 1.14e-103 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0897680 | Msa0991980 | 0.893959 | 3.865576e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991980 | MtrunA17_Chr6g0483521 | 92.377 | 223 | 12 | 3 | 1 | 218 | 1 | 223 | 2.20e-107 | 310 |
| Msa0991980 | MtrunA17_Chr6g0483561 | 67.521 | 234 | 59 | 6 | 1 | 218 | 1 | 233 | 4.25e-71 | 219 |
| Msa0991980 | MtrunA17_Chr6g0483581 | 66.094 | 233 | 64 | 4 | 1 | 218 | 1 | 233 | 4.12e-67 | 208 |
| Msa0991980 | MtrunA17_Chr6g0483511 | 67.500 | 200 | 47 | 6 | 1 | 198 | 1 | 184 | 3.51e-64 | 199 |
| Msa0991980 | MtrunA17_Chr3g0120551 | 48.000 | 75 | 39 | 0 | 2 | 76 | 3 | 77 | 9.08e-19 | 80.1 |
| Msa0991980 | MtrunA17_Chr2g0290831 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 3.85e-18 | 77.0 |
| Msa0991980 | MtrunA17_Chr5g0438551 | 48.913 | 92 | 44 | 2 | 3 | 91 | 2 | 93 | 1.12e-17 | 77.8 |
| Msa0991980 | MtrunA17_Chr3g0120541 | 48.148 | 81 | 41 | 1 | 2 | 82 | 3 | 82 | 6.96e-17 | 75.1 |
| Msa0991980 | MtrunA17_Chr3g0120531 | 47.887 | 71 | 36 | 1 | 2 | 71 | 3 | 73 | 1.62e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991980 | AT3G20180.3 | 50.000 | 82 | 41 | 0 | 1 | 82 | 1 | 82 | 2.50e-17 | 76.6 |
| Msa0991980 | AT3G20180.2 | 47.561 | 82 | 43 | 0 | 1 | 82 | 20 | 101 | 1.83e-16 | 75.1 |
| Msa0991980 | AT4G05030.2 | 47.297 | 74 | 39 | 0 | 1 | 74 | 1 | 74 | 2.76e-15 | 69.7 |
| Msa0991980 | AT3G20180.4 | 48.101 | 79 | 41 | 0 | 4 | 82 | 2 | 80 | 3.60e-15 | 70.9 |
| Msa0991980 | AT5G48290.1 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 4.91e-15 | 72.0 |
| Msa0991980 | AT3G20180.1 | 48.684 | 76 | 39 | 0 | 7 | 82 | 3 | 78 | 7.14e-15 | 70.1 |
| Msa0991980 | AT4G05030.1 | 47.887 | 71 | 37 | 0 | 4 | 74 | 37 | 107 | 1.17e-14 | 68.9 |
| Msa0991980 | AT3G07600.1 | 43.678 | 87 | 49 | 0 | 1 | 87 | 1 | 87 | 1.26e-13 | 67.8 |
Find 47 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTTGAGTTTCTTATTA+TGG | 0.210164 | 6_4:+58571830 | Msa0991980:CDS |
| TTTGGTGAAGGAGGCTTCTT+AGG | 0.245817 | 6_4:-58569847 | None:intergenic |
| TCATAACAAACCATGTAATT+AGG | 0.276014 | 6_4:-58569955 | None:intergenic |
| CACCTCTTCCACACTTATAA+TGG | 0.303447 | 6_4:-58569551 | None:intergenic |
| TTCGTATTTGTCTTCTGCTT+TGG | 0.306809 | 6_4:-58567928 | None:intergenic |
| TTACACTCACAACAACTCTT+TGG | 0.313053 | 6_4:-58569784 | None:intergenic |
| GGTATCAGAAGCCTTCTCTT+TGG | 0.335662 | 6_4:+58571851 | Msa0991980:CDS |
| TTCTTGTTGTCACAACAATT+AGG | 0.340817 | 6_4:-58569808 | None:intergenic |
| GGGTTACAATAAGGTTGATA+TGG | 0.371664 | 6_4:-58569922 | None:intergenic |
| CACATGATGGAGCAAGGTTC+AGG | 0.380976 | 6_4:-58569985 | None:intergenic |
| CTTCTGCTTTGGAATTGAGC+TGG | 0.401133 | 6_4:-58567917 | None:intergenic |
| GGTGGACATGGGTTACAATA+AGG | 0.404392 | 6_4:-58569931 | None:intergenic |
| GATAGTTATAAAGTTGCAAA+TGG | 0.417360 | 6_4:+58568154 | Msa0991980:CDS |
| GGAGCATAACCATAGCATCT+AGG | 0.436864 | 6_4:-58569901 | None:intergenic |
| ATGTAATTAGGTGGTGGACA+TGG | 0.450787 | 6_4:-58569943 | None:intergenic |
| AGGTGTGACTTCAGTATCAT+TGG | 0.462204 | 6_4:+58569435 | Msa0991980:intron |
| AAGTGTGGAAGAGGTGAAGA+AGG | 0.476785 | 6_4:+58569558 | Msa0991980:CDS |
| GAGCATAACCATAGCATCTA+GGG | 0.480309 | 6_4:-58569900 | None:intergenic |
| CACCATTATAAGTGTGGAAG+AGG | 0.493150 | 6_4:+58569549 | Msa0991980:CDS |
| TGCACCATTGTGGACATTGT+TGG | 0.497357 | 6_4:-58569873 | None:intergenic |
| GTGTTTGTTTCAATTAAGCT+AGG | 0.504012 | 6_4:+58567986 | Msa0991980:five_prime_UTR |
| ATGTCCACCACCTAATTACA+TGG | 0.504984 | 6_4:+58569945 | Msa0991980:CDS |
| TTTCAATTAAGCTAGGATGA+AGG | 0.511613 | 6_4:+58567993 | Msa0991980:exon |
| TCTTGCAACACTCATTGTAA+TGG | 0.531057 | 6_4:+58569682 | Msa0991980:CDS |
| GAATTGAGCTGGTTGTACAT+AGG | 0.539972 | 6_4:-58567906 | None:intergenic |
| AGAAGCCTTCTCTTTGGAGA+AGG | 0.543219 | 6_4:+58571857 | Msa0991980:CDS |
| TGTAATTAGGTGGTGGACAT+GGG | 0.552978 | 6_4:-58569942 | None:intergenic |
| AACAACCTTCTCCAAAGAGA+AGG | 0.568987 | 6_4:-58571862 | None:intergenic |
| AACTGTGTCTACATTATCAC+CGG | 0.572592 | 6_4:-58569488 | None:intergenic |
| AGCACTCAAAACTGCTGCTG+AGG | 0.581320 | 6_4:+58568199 | Msa0991980:CDS |
| CTAGGGCATGTGCACCATTG+TGG | 0.581564 | 6_4:-58569883 | None:intergenic |
| AAAACTGCTGCTGAGGTCAA+AGG | 0.586105 | 6_4:+58568206 | Msa0991980:CDS |
| TGCACATGCCCTAGATGCTA+TGG | 0.604526 | 6_4:+58569892 | Msa0991980:CDS |
| ATAGGTTATGATATATACAT+TGG | 0.611263 | 6_4:-58567888 | None:intergenic |
| CTGTGTCACCATTATAAGTG+TGG | 0.614178 | 6_4:+58569543 | Msa0991980:CDS |
| CAAACCATGTAATTAGGTGG+TGG | 0.618822 | 6_4:-58569949 | None:intergenic |
| AAGCTTCAGAAGCACGACAA+TGG | 0.620367 | 6_4:-58571907 | None:intergenic |
| GTGACTTCAGTATCATTGGA+AGG | 0.626567 | 6_4:+58569439 | Msa0991980:CDS |
| AAAGATAAGATATCTGTCAC+CGG | 0.627820 | 6_4:+58569469 | Msa0991980:CDS |
| CTTCAGAAGCACGACAATGG+CGG | 0.631566 | 6_4:-58571904 | None:intergenic |
| TAACAAACCATGTAATTAGG+TGG | 0.633123 | 6_4:-58569952 | None:intergenic |
| CTTACTCACATGATGGAGCA+AGG | 0.646295 | 6_4:-58569991 | None:intergenic |
| AGAGGTGAAGAAGGAAACCG+AGG | 0.666264 | 6_4:+58569567 | Msa0991980:CDS |
| TGTGGAAGTGCAAAATGTGA+TGG | 0.668591 | 6_4:+58569724 | Msa0991980:CDS |
| TGTGACAACAAGAAGTGTGA+TGG | 0.683170 | 6_4:+58569817 | Msa0991980:CDS |
| AAATCCAACAATGTCCACAA+TGG | 0.683825 | 6_4:+58569869 | Msa0991980:CDS |
| AGATCAAAGAATCTTCAACA+AGG | 0.705760 | 6_4:-58572003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAGTTTTTTTTTTTTTTTT+TGG | + | chr6_4:58567775-58567794 | Msa0991980:five_prime_UTR | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGGA+AGG | + | chr6_4:58567779-58567798 | Msa0991980:five_prime_UTR | 10.0% |
| !!! | TAAAACAAAATTTTGATTTA+AGG | + | chr6_4:58568450-58568469 | Msa0991980:intron | 10.0% |
| !!! | AAAACAAAATTTTGATTTAA+GGG | + | chr6_4:58568451-58568470 | Msa0991980:intron | 10.0% |
| !!! | AATTTTTTCTAATGATTTAT+TGG | - | chr6_4:58569008-58569027 | None:intergenic | 10.0% |
| !! | AATGTATTTAAAAACAAAAT+TGG | - | chr6_4:58569043-58569062 | None:intergenic | 10.0% |
| !! | AAAATAAAATTATCTCAATA+GGG | - | chr6_4:58571091-58571110 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTACAAAAAAATG+GGG | - | chr6_4:58571120-58571139 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTACAAAAAAAT+GGG | - | chr6_4:58571121-58571140 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTACAAAAAAA+TGG | - | chr6_4:58571122-58571141 | None:intergenic | 10.0% |
| !!! | TATCTTTTAGAAAAAAAATT+TGG | + | chr6_4:58571164-58571183 | Msa0991980:intron | 10.0% |
| !!! | ATCTTTTAGAAAAAAAATTT+GGG | + | chr6_4:58571165-58571184 | Msa0991980:intron | 10.0% |
| !!! | TTATTCTTTTTCATTTTATC+TGG | + | chr6_4:58567750-58567769 | Msa0991980:five_prime_UTR | 15.0% |
| !! | TGAATTATGGATTTAAATTA+TGG | + | chr6_4:58568258-58568277 | Msa0991980:intron | 15.0% |
| !! | GAATTATGGATTTAAATTAT+GGG | + | chr6_4:58568259-58568278 | Msa0991980:intron | 15.0% |
| !!! | AAACAAAATTTTGATTTAAG+GGG | + | chr6_4:58568452-58568471 | Msa0991980:intron | 15.0% |
| !!! | GTTGTTTTGATATTAATTTT+AGG | - | chr6_4:58568738-58568757 | None:intergenic | 15.0% |
| !! | AAATTTAGTGATTAAAGAAT+TGG | + | chr6_4:58570158-58570177 | Msa0991980:intron | 15.0% |
| !! | TTATAATAAACTGCATAATT+AGG | + | chr6_4:58570317-58570336 | Msa0991980:intron | 15.0% |
| !! | AAATTTAGTGATTAAAGAAT+TGG | + | chr6_4:58570158-58570177 | Msa0991980:intron | 15.0% |
| !! | CAAAATAAAATTATCTCAAT+AGG | - | chr6_4:58571092-58571111 | None:intergenic | 15.0% |
| !!! | CTATTGAGATAATTTTATTT+TGG | + | chr6_4:58571090-58571109 | Msa0991980:intron | 15.0% |
| !!! | TCTTTTAGAAAAAAAATTTG+GGG | + | chr6_4:58571166-58571185 | Msa0991980:intron | 15.0% |
| !!! | AAAGAAAAATTTGGAATAAA+AGG | + | chr6_4:58571190-58571209 | Msa0991980:intron | 15.0% |
| !! | ATAGGTTATGATATATACAT+TGG | - | chr6_4:58567891-58567910 | None:intergenic | 20.0% |
| !! | ATTCAAACAAATATAGTGAT+TGG | - | chr6_4:58568243-58568262 | None:intergenic | 20.0% |
| !! | CACTATATTTGTTTGAATTA+TGG | + | chr6_4:58568245-58568264 | Msa0991980:intron | 20.0% |
| !! | TACAGTAAAATGTAGTTAAT+GGG | - | chr6_4:58568359-58568378 | None:intergenic | 20.0% |
| !! | TTACAGTAAAATGTAGTTAA+TGG | - | chr6_4:58568360-58568379 | None:intergenic | 20.0% |
| !! | ACAAAATAATTATGGAAAAC+CGG | - | chr6_4:58568482-58568501 | None:intergenic | 20.0% |
| !! | AAAATCATGAGATTTATTGA+GGG | - | chr6_4:58568535-58568554 | None:intergenic | 20.0% |
| !!! | TTTATTTGCATTAGAGTTTT+TGG | + | chr6_4:58570828-58570847 | Msa0991980:intron | 20.0% |
| !!! | AGATCAACTTTAATTTTAGA+GGG | + | chr6_4:58571251-58571270 | Msa0991980:intron | 20.0% |
| !!! | ATTTTTCTAAAGTAATCTAG+CGG | + | chr6_4:58571302-58571321 | Msa0991980:intron | 20.0% |
| !!! | CATTGTCATTGTTTTATGAA+AGG | - | chr6_4:58567823-58567842 | None:intergenic | 25.0% |
| ! | GATAGTTATAAAGTTGCAAA+TGG | + | chr6_4:58568154-58568173 | Msa0991980:CDS | 25.0% |
| !!! | CAAACTATGGTTTTAAATTC+CGG | - | chr6_4:58568409-58568428 | None:intergenic | 25.0% |
| !!! | TCCATAATTATTTTGTTCTC+AGG | + | chr6_4:58568486-58568505 | Msa0991980:intron | 25.0% |
| ! | ACCTGAGAACAAAATAATTA+TGG | - | chr6_4:58568490-58568509 | None:intergenic | 25.0% |
| ! | GAAAATCATGAGATTTATTG+AGG | - | chr6_4:58568536-58568555 | None:intergenic | 25.0% |
| !!! | TGTTTTTGGTTGTAGATTAT+AGG | + | chr6_4:58568582-58568601 | Msa0991980:intron | 25.0% |
| ! | GTGTGACAAAAATAACTTAA+AGG | + | chr6_4:58568611-58568630 | Msa0991980:intron | 25.0% |
| ! | GTTACAAATCTCAAACTTAA+AGG | + | chr6_4:58568642-58568661 | Msa0991980:intron | 25.0% |
| ! | TGTAATATATTGGTCCTTTA+AGG | - | chr6_4:58568680-58568699 | None:intergenic | 25.0% |
| !! | GTTTGAGGTTTGTAATATAT+TGG | - | chr6_4:58568690-58568709 | None:intergenic | 25.0% |
| ! | CAAAACAACGACATAATTAT+TGG | + | chr6_4:58568749-58568768 | Msa0991980:intron | 25.0% |
| ! | ATGTGTACATATAAGTTAAC+AGG | + | chr6_4:58568942-58568961 | Msa0991980:intron | 25.0% |
| !!! | GATTTATTGGTTCTGTTTTT+TGG | - | chr6_4:58568995-58569014 | None:intergenic | 25.0% |
| ! | TCAAATAACATATCTGATTG+TGG | - | chr6_4:58569202-58569221 | None:intergenic | 25.0% |
| ! | TTCTCAATCACAATATATAC+CGG | + | chr6_4:58569347-58569366 | Msa0991980:intron | 25.0% |
| ! | TCCAAAATACATGCATATAT+AGG | + | chr6_4:58569415-58569434 | Msa0991980:intron | 25.0% |
| !! | ACCTATATATGCATGTATTT+TGG | - | chr6_4:58569419-58569438 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTTTTCTTCCT+CGG | - | chr6_4:58569587-58569606 | None:intergenic | 25.0% |
| ! | TCATAACAAACCATGTAATT+AGG | - | chr6_4:58569958-58569977 | None:intergenic | 25.0% |
| !! | TGCTTGCAAATTTTATTGAA+AGG | - | chr6_4:58570252-58570271 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | + | chr6_4:58570024-58570043 | Msa0991980:intron | 25.0% |
| ! | TTAGTGATGAAAATATTGAG+AGG | + | chr6_4:58570099-58570118 | Msa0991980:intron | 25.0% |
| ! | TTAATGACAGAATTAGATAG+AGG | - | chr6_4:58570140-58570159 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_4:58570024-58570043 | None:intergenic | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_4:58570251-58570270 | Msa0991980:intron | 25.0% |
| ! | TAATAAACTGCATAATTAGG+TGG | + | chr6_4:58570320-58570339 | Msa0991980:intron | 25.0% |
| ! | TCATAACAAACTGCATAATT+AGG | - | chr6_4:58570440-58570459 | None:intergenic | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | - | chr6_4:58570251-58570270 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | + | chr6_4:58570024-58570043 | Msa0991980:intron | 25.0% |
| !! | TTAGTGATGAAAATTTTGAG+AGG | + | chr6_4:58570579-58570598 | Msa0991980:intron | 25.0% |
| ! | TTAATGACAGAATTAGATAG+AGG | - | chr6_4:58570140-58570159 | None:intergenic | 25.0% |
| ! | TTTGAAAGTTGCAACAAATT+TGG | + | chr6_4:58570737-58570756 | Msa0991980:intron | 25.0% |
| !!! | ATTAGAGTTTTTGGTTGTTT+TGG | + | chr6_4:58570837-58570856 | Msa0991980:intron | 25.0% |
| ! | AATACTTACTAGATTTGTCA+CGG | + | chr6_4:58570896-58570915 | Msa0991980:intron | 25.0% |
| ! | AAAAAATCGATCAAGAGTTA+GGG | - | chr6_4:58570964-58570983 | None:intergenic | 25.0% |
| ! | ATTTGGGGAAAAGAAAAATT+TGG | + | chr6_4:58571181-58571200 | Msa0991980:intron | 25.0% |
| ! | TTTGAATGCAAAACAACAAA+TGG | + | chr6_4:58571216-58571235 | Msa0991980:intron | 25.0% |
| !!! | GAGATCAACTTTAATTTTAG+AGG | + | chr6_4:58571250-58571269 | Msa0991980:intron | 25.0% |
| ! | ATTCACTTAAAGTGAGTAAA+TGG | + | chr6_4:58571331-58571350 | Msa0991980:intron | 25.0% |
| ! | AAACACTGAGAAAAATTTGT+AGG | + | chr6_4:58571461-58571480 | Msa0991980:intron | 25.0% |
| !! | TCTCTTTGAGTTTCTTATTA+TGG | + | chr6_4:58571830-58571849 | Msa0991980:CDS | 25.0% |
| ! | AAACACCAACTTTTTGTGAT+TGG | - | chr6_4:58567972-58567991 | None:intergenic | 30.0% |
| GTGTTTGTTTCAATTAAGCT+AGG | + | chr6_4:58567986-58568005 | Msa0991980:five_prime_UTR | 30.0% | |
| TTTCAATTAAGCTAGGATGA+AGG | + | chr6_4:58567993-58568012 | Msa0991980:exon | 30.0% | |
| ATGGGATCAAAATTGCAATT+GGG | - | chr6_4:58568341-58568360 | None:intergenic | 30.0% | |
| AATGGGATCAAAATTGCAAT+TGG | - | chr6_4:58568342-58568361 | None:intergenic | 30.0% | |
| ACTAACTACAAAGCAAACTA+TGG | - | chr6_4:58568422-58568441 | None:intergenic | 30.0% | |
| !! | TAGTTTGCTTTGTAGTTAGT+AGG | + | chr6_4:58568422-58568441 | Msa0991980:intron | 30.0% |
| AAATAATTATGGAAAACCGG+TGG | - | chr6_4:58568479-58568498 | None:intergenic | 30.0% | |
| ! | GTAAACTCTCATTCTGTTTT+TGG | + | chr6_4:58568568-58568587 | Msa0991980:intron | 30.0% |
| TTTAGGCTAAATTACACTTG+AGG | - | chr6_4:58568721-58568740 | None:intergenic | 30.0% | |
| ! | ACACTACTTTAAGTCTTATG+TGG | + | chr6_4:58568915-58568934 | Msa0991980:intron | 30.0% |
| TCTGATTGTGGTTTATTGTA+AGG | - | chr6_4:58569190-58569209 | None:intergenic | 30.0% | |
| AAAGATAAGATATCTGTCAC+CGG | + | chr6_4:58569469-58569488 | Msa0991980:CDS | 30.0% | |
| !! | GAACTTTTTCTTTAGCATGT+TGG | - | chr6_4:58569521-58569540 | None:intergenic | 30.0% |
| AGAAGAAGTGAAAAAGATGA+TGG | + | chr6_4:58569624-58569643 | Msa0991980:CDS | 30.0% | |
| ! | TTCTTGTTGTCACAACAATT+AGG | - | chr6_4:58569811-58569830 | None:intergenic | 30.0% |
| TAACAAACCATGTAATTAGG+TGG | - | chr6_4:58569955-58569974 | None:intergenic | 30.0% | |
| TAACAAACTGCATAATTAGG+TGG | - | chr6_4:58570437-58570456 | None:intergenic | 30.0% | |
| !! | GAATTGGTGATGAATTTCAA+TGG | + | chr6_4:58570654-58570673 | Msa0991980:intron | 30.0% |
| !! | ACTGAATTTTACTGCTTTTG+TGG | + | chr6_4:58570795-58570814 | Msa0991980:intron | 30.0% |
| !! | GTATTTTACGTATTGAGTTG+AGG | - | chr6_4:58570881-58570900 | None:intergenic | 30.0% |
| ! | GATTTTCTTCACCATATCTT+TGG | - | chr6_4:58570938-58570957 | None:intergenic | 30.0% |
| CAAAAAATCGATCAAGAGTT+AGG | - | chr6_4:58570965-58570984 | None:intergenic | 30.0% | |
| !! | GTAATGTGAGCAATTTTTAG+AGG | + | chr6_4:58571031-58571050 | Msa0991980:intron | 30.0% |
| ! | TTTTTACAAAAAAATGGGGC+TGG | - | chr6_4:58571116-58571135 | None:intergenic | 30.0% |
| ! | GCTTTTGTCTTGAGTTAAAT+TGG | + | chr6_4:58571273-58571292 | Msa0991980:intron | 30.0% |
| TTTGTCTTGAGTTAAATTGG+AGG | + | chr6_4:58571276-58571295 | Msa0991980:intron | 30.0% | |
| !!! | TCTCAGTGTTTTTTTGTTAG+AGG | - | chr6_4:58571452-58571471 | None:intergenic | 30.0% |
| ACTGAGAAAAATTTGTAGGT+TGG | + | chr6_4:58571465-58571484 | Msa0991980:intron | 30.0% | |
| CTGAGAAAAATTTGTAGGTT+GGG | + | chr6_4:58571466-58571485 | Msa0991980:intron | 30.0% | |
| TTATAGCACCCATTAACATT+TGG | - | chr6_4:58571493-58571512 | None:intergenic | 30.0% | |
| TTCCTCTTTATATTCTGACA+CGG | - | chr6_4:58571589-58571608 | None:intergenic | 30.0% | |
| TTCGTATTTGTCTTCTGCTT+TGG | - | chr6_4:58567931-58567950 | None:intergenic | 35.0% | |
| TGTGTCCAATCACAAAAAGT+TGG | + | chr6_4:58567964-58567983 | Msa0991980:five_prime_UTR | 35.0% | |
| TTTGCTTTGTAGTTAGTAGG+AGG | + | chr6_4:58568425-58568444 | Msa0991980:intron | 35.0% | |
| CTTGAGGTTCTATAAGTTTG+AGG | - | chr6_4:58568705-58568724 | None:intergenic | 35.0% | |
| ACAATCAATCATGCTTGTGT+AGG | - | chr6_4:58568848-58568867 | None:intergenic | 35.0% | |
| AACTGTGTCTACATTATCAC+CGG | - | chr6_4:58569491-58569510 | None:intergenic | 35.0% | |
| TCTTGCAACACTCATTGTAA+TGG | + | chr6_4:58569682-58569701 | Msa0991980:CDS | 35.0% | |
| AAGTGTGAAAAATGCACATG+TGG | + | chr6_4:58569706-58569725 | Msa0991980:CDS | 35.0% | |
| TTACACTCACAACAACTCTT+TGG | - | chr6_4:58569787-58569806 | None:intergenic | 35.0% | |
| !!! | CATTGTTGGATTTTTGGTGA+AGG | - | chr6_4:58569862-58569881 | None:intergenic | 35.0% |
| ! | TGTGGACATTGTTGGATTTT+TGG | - | chr6_4:58569868-58569887 | None:intergenic | 35.0% |
| AAATCCAACAATGTCCACAA+TGG | + | chr6_4:58569869-58569888 | Msa0991980:CDS | 35.0% | |
| !! | GGGTTACAATAAGGTTGATA+TGG | - | chr6_4:58570350-58570369 | None:intergenic | 35.0% |
| TAAACTGCATAATTAGGTGG+TGG | + | chr6_4:58570323-58570342 | Msa0991980:intron | 35.0% | |
| !! | CATAATTAGGTGGTGGATAA+GGG | + | chr6_4:58570330-58570349 | Msa0991980:intron | 35.0% |
| !! | GGGTTACAATAAGGTTGATA+TGG | + | chr6_4:58570350-58570369 | Msa0991980:intron | 35.0% |
| !! | CATAATTAGGTGGTGGATAA+GGG | - | chr6_4:58570330-58570349 | None:intergenic | 35.0% |
| TTCAGTGCAATGTAGTATCT+TGG | - | chr6_4:58570781-58570800 | None:intergenic | 35.0% | |
| TTGTTACTCCACCAAAGATA+TGG | + | chr6_4:58570924-58570943 | Msa0991980:intron | 35.0% | |
| TTTCTTCACCATATCTTTGG+TGG | - | chr6_4:58570935-58570954 | None:intergenic | 35.0% | |
| TTGTGTGTAAAATCCCAATC+AGG | + | chr6_4:58570982-58571001 | Msa0991980:intron | 35.0% | |
| GAATGCAAAACAACAAATGG+TGG | + | chr6_4:58571219-58571238 | Msa0991980:intron | 35.0% | |
| ! | ACAACAAATGGTGGAAAAGT+TGG | + | chr6_4:58571228-58571247 | Msa0991980:intron | 35.0% |
| AACCGTGTCAGAATATAAAG+AGG | + | chr6_4:58571584-58571603 | Msa0991980:intron | 35.0% | |
| AAAAATGAAGAAGACGAAGC+TGG | - | chr6_4:58571978-58571997 | None:intergenic | 35.0% | |
| GAATTGAGCTGGTTGTACAT+AGG | - | chr6_4:58567909-58567928 | None:intergenic | 40.0% | |
| AGACTTCGAAATCCGCAATA+TGG | - | chr6_4:58568306-58568325 | None:intergenic | 40.0% | |
| ATTTGCAGCGTAACGTTAAC+CGG | + | chr6_4:58568387-58568406 | Msa0991980:intron | 40.0% | |
| !!! | TTTTGATTTAAGGGGACCAC+CGG | + | chr6_4:58568460-58568479 | Msa0991980:intron | 40.0% |
| GGACTTATGTGTGACCTTAA+AGG | + | chr6_4:58568663-58568682 | Msa0991980:intron | 40.0% | |
| !! | GAAGAAGCACTAGCTAAAAC+CGG | - | chr6_4:58569369-58569388 | None:intergenic | 40.0% |
| AGGTGTGACTTCAGTATCAT+TGG | + | chr6_4:58569435-58569454 | Msa0991980:intron | 40.0% | |
| GTGACTTCAGTATCATTGGA+AGG | + | chr6_4:58569439-58569458 | Msa0991980:CDS | 40.0% | |
| CTGTGTCACCATTATAAGTG+TGG | + | chr6_4:58569543-58569562 | Msa0991980:CDS | 40.0% | |
| CACCATTATAAGTGTGGAAG+AGG | + | chr6_4:58569549-58569568 | Msa0991980:CDS | 40.0% | |
| CACCTCTTCCACACTTATAA+TGG | - | chr6_4:58569554-58569573 | None:intergenic | 40.0% | |
| !! | GCATGTCGTACTGTTTTGTT+TGG | + | chr6_4:58569649-58569668 | Msa0991980:CDS | 40.0% |
| ! | TGTGGAAGTGCAAAATGTGA+TGG | + | chr6_4:58569724-58569743 | Msa0991980:CDS | 40.0% |
| ! | TGTGACAACAAGAAGTGTGA+TGG | + | chr6_4:58569817-58569836 | Msa0991980:CDS | 40.0% |
| !!! | TGTTGGATTTTTGGTGAAGG+AGG | - | chr6_4:58569859-58569878 | None:intergenic | 40.0% |
| GAGCATAACCATAGCATCTA+GGG | - | chr6_4:58569903-58569922 | None:intergenic | 40.0% | |
| !! | TGTAATTAGGTGGTGGACAT+GGG | - | chr6_4:58569945-58569964 | None:intergenic | 40.0% |
| !! | ATGTAATTAGGTGGTGGACA+TGG | - | chr6_4:58569946-58569965 | None:intergenic | 40.0% |
| ATGTCCACCACCTAATTACA+TGG | + | chr6_4:58569945-58569964 | Msa0991980:CDS | 40.0% | |
| CAAACCATGTAATTAGGTGG+TGG | - | chr6_4:58569952-58569971 | None:intergenic | 40.0% | |
| CATTGTCCTTACTCACATGA+TGG | - | chr6_4:58570001-58570020 | None:intergenic | 40.0% | |
| CATAGTCCTTACTCACATGA+TGG | + | chr6_4:58570274-58570293 | Msa0991980:intron | 40.0% | |
| !! | GCATAATTAGGTGGTGGATA+AGG | + | chr6_4:58570329-58570348 | Msa0991980:intron | 40.0% |
| GGTGGATAAGGGTTACAATA+AGG | + | chr6_4:58570341-58570360 | Msa0991980:intron | 40.0% | |
| GAGCATAACCATAACACCTA+AGG | + | chr6_4:58570372-58570391 | Msa0991980:intron | 40.0% | |
| TGCTAATGCCTTAGGTGTTA+TGG | - | chr6_4:58570383-58570402 | None:intergenic | 40.0% | |
| GGTTACAATAAGGTCCTCAA+TGG | - | chr6_4:58570406-58570425 | None:intergenic | 40.0% | |
| GGTGGATAAGGGTTACAATA+AGG | - | chr6_4:58570341-58570360 | None:intergenic | 40.0% | |
| !! | GCATAATTAGGTGGTGGATA+AGG | - | chr6_4:58570329-58570348 | None:intergenic | 40.0% |
| CAAACTGCATAATTAGGTGG+TGG | - | chr6_4:58570434-58570453 | None:intergenic | 40.0% | |
| TGGAGCAAGGTTCAAGATTT+GGG | - | chr6_4:58570463-58570482 | None:intergenic | 40.0% | |
| ATGGAGCAAGGTTCAAGATT+TGG | - | chr6_4:58570464-58570483 | None:intergenic | 40.0% | |
| CATAGTCCTTACTCACATGA+TGG | - | chr6_4:58570274-58570293 | None:intergenic | 40.0% | |
| AGTATCTTGGAGTACAGTCT+TGG | - | chr6_4:58570768-58570787 | None:intergenic | 40.0% | |
| AATCGATCAAGAGTTAGGGT+CGG | - | chr6_4:58570960-58570979 | None:intergenic | 40.0% | |
| TTGAGAGTTACGACCTGATT+GGG | - | chr6_4:58570998-58571017 | None:intergenic | 40.0% | |
| ATTGAGAGTTACGACCTGAT+TGG | - | chr6_4:58570999-58571018 | None:intergenic | 40.0% | |
| AACCATTGTCCCTGAATTCT+TGG | + | chr6_4:58571064-58571083 | Msa0991980:intron | 40.0% | |
| CAATAGGGTCCAAGAATTCA+GGG | - | chr6_4:58571076-58571095 | None:intergenic | 40.0% | |
| TCAATAGGGTCCAAGAATTC+AGG | - | chr6_4:58571077-58571096 | None:intergenic | 40.0% | |
| ACAGGGATATGCAGATGTTA+GGG | - | chr6_4:58571374-58571393 | None:intergenic | 40.0% | |
| AGGTTGGGACCAAATGTTAA+TGG | + | chr6_4:58571481-58571500 | Msa0991980:intron | 40.0% | |
| GGTTGGGACCAAATGTTAAT+GGG | + | chr6_4:58571482-58571501 | Msa0991980:intron | 40.0% | |
| AACAACCTTCTCCAAAGAGA+AGG | - | chr6_4:58571865-58571884 | None:intergenic | 40.0% | |
| GCTTCAAAAACACGCAACAA+TGG | - | chr6_4:58571950-58571969 | None:intergenic | 40.0% | |
| !! | CTTCTGCTTTGGAATTGAGC+TGG | - | chr6_4:58567920-58567939 | None:intergenic | 45.0% |
| AAAACTGCTGCTGAGGTCAA+AGG | + | chr6_4:58568206-58568225 | Msa0991980:CDS | 45.0% | |
| CTTCGAAATCCGCAATATGG+TGG | - | chr6_4:58568303-58568322 | None:intergenic | 45.0% | |
| AAGTGTGGAAGAGGTGAAGA+AGG | + | chr6_4:58569558-58569577 | Msa0991980:CDS | 45.0% | |
| TTTGGTGAAGGAGGCTTCTT+AGG | - | chr6_4:58569850-58569869 | None:intergenic | 45.0% | |
| TGCACCATTGTGGACATTGT+TGG | - | chr6_4:58569876-58569895 | None:intergenic | 45.0% | |
| GGAGCATAACCATAGCATCT+AGG | - | chr6_4:58569904-58569923 | None:intergenic | 45.0% | |
| ! | GGTGGACATGGGTTACAATA+AGG | - | chr6_4:58569934-58569953 | None:intergenic | 45.0% |
| ! | CTTACTCACATGATGGAGCA+AGG | - | chr6_4:58570281-58570300 | None:intergenic | 45.0% |
| CTTGCTCCATCATGTGAGTA+AGG | + | chr6_4:58569992-58570011 | Msa0991980:intron | 45.0% | |
| CTTGCTCCATCATGTGAGTA+AGG | - | chr6_4:58569992-58570011 | None:intergenic | 45.0% | |
| ! | CTTACTCACATGATGGAGCA+AGG | + | chr6_4:58570281-58570300 | Msa0991980:intron | 45.0% |
| ! | CTCAATGGTGCTAATGCCTT+AGG | - | chr6_4:58570391-58570410 | None:intergenic | 45.0% |
| ! | CTAAGGCATTAGCACCATTG+AGG | + | chr6_4:58570389-58570408 | Msa0991980:intron | 45.0% |
| ! | CTTACTCACATGATGGAGCA+AGG | - | chr6_4:58570281-58570300 | None:intergenic | 45.0% |
| CTTGCTCCATCATGTGAGTA+AGG | + | chr6_4:58569992-58570011 | Msa0991980:intron | 45.0% | |
| GTCCAAGAATTCAGGGACAA+TGG | - | chr6_4:58571069-58571088 | None:intergenic | 45.0% | |
| GACAGGGATATGCAGATGTT+AGG | - | chr6_4:58571375-58571394 | None:intergenic | 45.0% | |
| GTACGTTCACGTAGACAAGT+TGG | + | chr6_4:58571403-58571422 | Msa0991980:intron | 45.0% | |
| GAAGCTACAGCTAGCAGTTA+GGG | - | chr6_4:58571659-58571678 | None:intergenic | 45.0% | |
| AGAAGCTACAGCTAGCAGTT+AGG | - | chr6_4:58571660-58571679 | None:intergenic | 45.0% | |
| GCTTCTGTTGAGACAGTTAG+AGG | + | chr6_4:58571674-58571693 | Msa0991980:intron | 45.0% | |
| GGTATCAGAAGCCTTCTCTT+TGG | + | chr6_4:58571851-58571870 | Msa0991980:CDS | 45.0% | |
| ! | AGAAGCCTTCTCTTTGGAGA+AGG | + | chr6_4:58571857-58571876 | Msa0991980:CDS | 45.0% |
| ! | AAGCTTCAGAAGCACGACAA+TGG | - | chr6_4:58571910-58571929 | None:intergenic | 45.0% |
| AGCACTCAAAACTGCTGCTG+AGG | + | chr6_4:58568199-58568218 | Msa0991980:CDS | 50.0% | |
| CAATATGGTGGTCCCAACTG+CGG | - | chr6_4:58568291-58568310 | None:intergenic | 50.0% | |
| CAGTTGGGACCACCATATTG+CGG | + | chr6_4:58568291-58568310 | Msa0991980:intron | 50.0% | |
| AGAGGTGAAGAAGGAAACCG+AGG | + | chr6_4:58569567-58569586 | Msa0991980:CDS | 50.0% | |
| TGCACATGCCCTAGATGCTA+TGG | + | chr6_4:58569892-58569911 | Msa0991980:CDS | 50.0% | |
| ! | CACATGATGGAGCAAGGTTC+AGG | - | chr6_4:58570287-58570306 | None:intergenic | 50.0% |
| GAACGTACGTCAGTTGGACA+GGG | - | chr6_4:58571391-58571410 | None:intergenic | 50.0% | |
| TGAACGTACGTCAGTTGGAC+AGG | - | chr6_4:58571392-58571411 | None:intergenic | 50.0% | |
| CTACGTGAACGTACGTCAGT+TGG | - | chr6_4:58571397-58571416 | None:intergenic | 50.0% | |
| ! | CGTTCACGTAGACAAGTTGG+AGG | + | chr6_4:58571406-58571425 | Msa0991980:intron | 50.0% |
| ! | CTTCAGAAGCACGACAATGG+CGG | - | chr6_4:58571907-58571926 | None:intergenic | 50.0% |
| ! | TTATGGGCTGCAACCGCAGT+TGG | + | chr6_4:58568275-58568294 | Msa0991980:intron | 55.0% |
| ! | TATGGGCTGCAACCGCAGTT+GGG | + | chr6_4:58568276-58568295 | Msa0991980:intron | 55.0% |
| CTAGGGCATGTGCACCATTG+TGG | - | chr6_4:58569886-58569905 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58567730 | 58572022 | 58567730 | ID=Msa0991980;Name=Msa0991980 |
| chr6_4 | mRNA | 58567730 | 58572022 | 58567730 | ID=Msa0991980-mRNA-1;Parent=Msa0991980;Name=Msa0991980-mRNA-1;_AED=0.32;_eAED=0.32;_QI=279|0.66|0.5|0.75|0.66|0.5|4|0|283 |
| chr6_4 | exon | 58567730 | 58568014 | 58567730 | ID=Msa0991980-mRNA-1:exon:11594;Parent=Msa0991980-mRNA-1 |
| chr6_4 | exon | 58568149 | 58568227 | 58568149 | ID=Msa0991980-mRNA-1:exon:11595;Parent=Msa0991980-mRNA-1 |
| chr6_4 | exon | 58569437 | 58570004 | 58569437 | ID=Msa0991980-mRNA-1:exon:11596;Parent=Msa0991980-mRNA-1 |
| chr6_4 | exon | 58571824 | 58572022 | 58571824 | ID=Msa0991980-mRNA-1:exon:11597;Parent=Msa0991980-mRNA-1 |
| chr6_4 | five_prime_UTR | 58567730 | 58568008 | 58567730 | ID=Msa0991980-mRNA-1:five_prime_utr;Parent=Msa0991980-mRNA-1 |
| chr6_4 | CDS | 58568009 | 58568014 | 58568009 | ID=Msa0991980-mRNA-1:cds;Parent=Msa0991980-mRNA-1 |
| chr6_4 | CDS | 58568149 | 58568227 | 58568149 | ID=Msa0991980-mRNA-1:cds;Parent=Msa0991980-mRNA-1 |
| chr6_4 | CDS | 58569437 | 58570004 | 58569437 | ID=Msa0991980-mRNA-1:cds;Parent=Msa0991980-mRNA-1 |
| chr6_4 | CDS | 58571824 | 58572022 | 58571824 | ID=Msa0991980-mRNA-1:cds;Parent=Msa0991980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
