Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0898420 | Msa0898480 | 0.881817 | 1.750863e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGCTGTTGGAATTTC+TGG | 0.065785 | 6_1:+92619007 | Msa0898480:three_prime_UTR |
| TAATTTGCAACACCTATATT+AGG | 0.161554 | 6_1:+92619327 | Msa0898480:three_prime_UTR |
| TTAGTCCAACCAAGTATTCT+AGG | 0.256388 | 6_1:+92619139 | Msa0898480:three_prime_UTR |
| TCAGAAGAAGATACTTAAAA+AGG | 0.321134 | 6_1:+92615867 | Msa0898480:five_prime_UTR |
| AATTTGCAACACCTATATTA+GGG | 0.343152 | 6_1:+92619328 | Msa0898480:three_prime_UTR |
| TTGACGGCGGTGGTGTGTTT+TGG | 0.343920 | 6_1:-92615237 | None:intergenic |
| TCTGACAGGTTCAGGTGTAT+TGG | 0.383747 | 6_1:+92617402 | Msa0898480:intron |
| CTCTCTGAATCGCGTCCAAC+TGG | 0.394223 | 6_1:+92615581 | Msa0898480:five_prime_UTR |
| GTGTTACAGTGAAGCTGTTT+CGG | 0.397478 | 6_1:+92618348 | Msa0898480:three_prime_UTR |
| GGAACTGTCTTTAAAGCTGT+TGG | 0.420625 | 6_1:+92618998 | Msa0898480:three_prime_UTR |
| GTGTATTGGATGAAATATAA+AGG | 0.428721 | 6_1:+92618405 | Msa0898480:three_prime_UTR |
| AGAGGAAATTCAAAGTGTAT+TGG | 0.440311 | 6_1:+92618391 | Msa0898480:three_prime_UTR |
| AATATCAATCCTAGAATACT+TGG | 0.446462 | 6_1:-92619148 | None:intergenic |
| GCATTTGAACAATCACATCT+TGG | 0.460376 | 6_1:+92616499 | Msa0898480:CDS |
| ATATACTTTCTGTGGTATGC+AGG | 0.470770 | 6_1:-92619305 | None:intergenic |
| AGCTAAGCTATCCCTAATAT+AGG | 0.491468 | 6_1:-92619339 | None:intergenic |
| AAATTCTAAATCTCACTCTC+AGG | 0.492072 | 6_1:+92617455 | Msa0898480:CDS |
| TCTTGGACAAGGAAAACTCT+TGG | 0.495492 | 6_1:+92616516 | Msa0898480:CDS |
| GTTCTTCAGCATGCATGTCT+AGG | 0.512038 | 6_1:+92615313 | Msa0898480:five_prime_UTR |
| CTTGGACAAGGAAAACTCTT+GGG | 0.522312 | 6_1:+92616517 | Msa0898480:CDS |
| CTGGTGGATCAAGTGGGAGC+AGG | 0.534464 | 6_1:+92618189 | Msa0898480:three_prime_UTR |
| TGCAAATTATATACTTTCTG+TGG | 0.544915 | 6_1:-92619313 | None:intergenic |
| GATCCTACTGGTGGATCAAG+TGG | 0.545710 | 6_1:+92618182 | Msa0898480:three_prime_UTR |
| GTCTAATCATTATTTCAAAG+AGG | 0.546881 | 6_1:+92618373 | Msa0898480:three_prime_UTR |
| GACGGCGACCACGAGATTGA+CGG | 0.553941 | 6_1:-92615253 | None:intergenic |
| TATTAGGGATAGCTTAGCTA+AGG | 0.554960 | 6_1:+92619343 | Msa0898480:three_prime_UTR |
| GAGATAGAAGAGGATCCTAC+TGG | 0.558794 | 6_1:+92618170 | Msa0898480:exon |
| TCAATCCTAGAATACTTGGT+TGG | 0.584321 | 6_1:-92619144 | None:intergenic |
| GAGCATCGATAGTAGCATGT+GGG | 0.605954 | 6_1:-92619034 | None:intergenic |
| ATAGAAGAGGATCCTACTGG+TGG | 0.614179 | 6_1:+92618173 | Msa0898480:exon |
| ATCCTACTGGTGGATCAAGT+GGG | 0.614534 | 6_1:+92618183 | Msa0898480:three_prime_UTR |
| GACCACGAGATTGACGGCGG+TGG | 0.624242 | 6_1:-92615247 | None:intergenic |
| GAACAATCACATCTTGGACA+AGG | 0.630238 | 6_1:+92616505 | Msa0898480:CDS |
| TAGACATGCATGCTGAAGAA+CGG | 0.634330 | 6_1:-92615311 | None:intergenic |
| TCTATCTGATGAGATAGAAG+AGG | 0.638045 | 6_1:+92618160 | Msa0898480:exon |
| AGCATCGATAGTAGCATGTG+GGG | 0.641869 | 6_1:-92619033 | None:intergenic |
| TGAGCATCGATAGTAGCATG+TGG | 0.647314 | 6_1:-92619035 | None:intergenic |
| CTCCCACTTGATCCACCAGT+AGG | 0.659602 | 6_1:-92618185 | None:intergenic |
| ACATGCATGCTGAAGAACGG+TGG | 0.703164 | 6_1:-92615308 | None:intergenic |
| GGCGACCACGAGATTGACGG+CGG | 0.728883 | 6_1:-92615250 | None:intergenic |
| GTGGCGATTAGTTTGTACGA+CGG | 0.729072 | 6_1:-92615289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTAATCAAAATTTTAT+AGG | - | chr6_1:92616244-92616263 | None:intergenic | 10.0% |
| !! | ATTAAAAAAATAATGAATGA+AGG | + | chr6_1:92616668-92616687 | Msa0898480:intron | 10.0% |
| !!! | TTTCTTAAATTTTGATAATT+TGG | + | chr6_1:92617141-92617160 | Msa0898480:intron | 10.0% |
| !! | TTACATAGTTTAATATTTAT+TGG | + | chr6_1:92617168-92617187 | Msa0898480:intron | 10.0% |
| !!! | TATTTTCTAAAATGTAATTT+TGG | + | chr6_1:92617659-92617678 | Msa0898480:intron | 10.0% |
| !! | CAAAATAATAATCAATAAAG+TGG | - | chr6_1:92615654-92615673 | None:intergenic | 15.0% |
| !! | AAGTATAATATGATAGAAAT+AGG | - | chr6_1:92616370-92616389 | None:intergenic | 15.0% |
| !! | TACAAAAATTAAATAAACAG+AGG | - | chr6_1:92616448-92616467 | None:intergenic | 15.0% |
| !! | AGATTATTAAAAGAAAAACA+AGG | + | chr6_1:92617004-92617023 | Msa0898480:intron | 15.0% |
| !! | TTTCTTTATAAATTGATGAA+AGG | + | chr6_1:92618282-92618301 | Msa0898480:intron | 15.0% |
| !! | AAACAAACAACACAAAAAAA+AGG | - | chr6_1:92615353-92615372 | None:intergenic | 20.0% |
| !!! | TTTTTATTGATCTCATTTGA+TGG | + | chr6_1:92615447-92615466 | Msa0898480:intron | 20.0% |
| !!! | GTTTTTTTGTTGTAAATATG+AGG | + | chr6_1:92615622-92615641 | Msa0898480:intron | 20.0% |
| !!! | TTTTGATTTAATTGTGTTTG+AGG | + | chr6_1:92615669-92615688 | Msa0898480:intron | 20.0% |
| !!! | TCTATCATGTTATATTCTTT+TGG | + | chr6_1:92616421-92616440 | Msa0898480:intron | 20.0% |
| !!! | TTATTTAATTTTTGTAGTGC+AGG | + | chr6_1:92616452-92616471 | Msa0898480:intron | 20.0% |
| !! | AGAAATTTGTAATTCATGAA+TGG | + | chr6_1:92616541-92616560 | Msa0898480:intron | 20.0% |
| !! | AGGAAAATAAACTTCAAATT+TGG | + | chr6_1:92616710-92616729 | Msa0898480:intron | 20.0% |
| !! | GAGAAAATAAAGAAATAACT+TGG | + | chr6_1:92616752-92616771 | Msa0898480:intron | 20.0% |
| !! | TTCTCATATTCATTTAAGTA+TGG | + | chr6_1:92616906-92616925 | Msa0898480:intron | 20.0% |
| !! | TTATTAAAAGAAAAACAAGG+AGG | + | chr6_1:92617007-92617026 | Msa0898480:intron | 20.0% |
| !!! | ATGAGTATATTGTAGTATTT+TGG | + | chr6_1:92617198-92617217 | Msa0898480:intron | 20.0% |
| !! | AATTTATATTGCTTGAAATG+AGG | + | chr6_1:92617344-92617363 | Msa0898480:intron | 20.0% |
| !! | ATTTATATTGCTTGAAATGA+GGG | + | chr6_1:92617345-92617364 | Msa0898480:intron | 20.0% |
| !!! | AAACTTTTCATTTTCATGTA+TGG | + | chr6_1:92618447-92618466 | Msa0898480:intron | 20.0% |
| !!! | AAAAAAAAATATTGGCTACA+AGG | + | chr6_1:92618502-92618521 | Msa0898480:intron | 20.0% |
| !!! | TAATTAGTGTGTATCATTTT+TGG | + | chr6_1:92618637-92618656 | Msa0898480:intron | 20.0% |
| !! | GACAATAATGAAATCATATT+TGG | - | chr6_1:92618717-92618736 | None:intergenic | 20.0% |
| !!! | TATATCATTTTTCAATCCAA+AGG | + | chr6_1:92618916-92618935 | Msa0898480:intron | 20.0% |
| !! | ATAAAAAAGATGATTTGACT+GGG | - | chr6_1:92619102-92619121 | None:intergenic | 20.0% |
| !! | AATAAAAAAGATGATTTGAC+TGG | - | chr6_1:92619103-92619122 | None:intergenic | 20.0% |
| !!! | AGTCAAATCATCTTTTTTAT+TGG | + | chr6_1:92619102-92619121 | Msa0898480:three_prime_UTR | 20.0% |
| !!! | TTTTCATGCTATTAGTTTAT+TGG | + | chr6_1:92619247-92619266 | Msa0898480:three_prime_UTR | 20.0% |
| !!! | ACTTTTTCTGTAATCATAAA+TGG | + | chr6_1:92619387-92619406 | Msa0898480:three_prime_UTR | 20.0% |
| !!! | TTTTCTCTCCTTTTTTGATT+TGG | + | chr6_1:92615382-92615401 | Msa0898480:intron | 25.0% |
| ! | TAAAACAGCCAAATCAAAAA+AGG | - | chr6_1:92615393-92615412 | None:intergenic | 25.0% |
| !! | ATGTGTTTAAAATGCAGATT+GGG | + | chr6_1:92615548-92615567 | Msa0898480:intron | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | + | chr6_1:92615723-92615742 | Msa0898480:intron | 25.0% |
| ! | TCAGAAGAAGATACTTAAAA+AGG | + | chr6_1:92615867-92615886 | Msa0898480:five_prime_UTR | 25.0% |
| ! | TAGATAATTAAAGCCACAAT+AGG | - | chr6_1:92615931-92615950 | None:intergenic | 25.0% |
| !!! | TTGTTTTGAGTAATTGGAAA+AGG | + | chr6_1:92616029-92616048 | Msa0898480:intron | 25.0% |
| !! | CTGAAGGATTTTATATATAC+AGG | - | chr6_1:92616166-92616185 | None:intergenic | 25.0% |
| !! | CAAGTATGAAACTATAGTTT+TGG | + | chr6_1:92616266-92616285 | Msa0898480:intron | 25.0% |
| ! | TCATATTATACTTATGACAG+TGG | + | chr6_1:92616377-92616396 | Msa0898480:intron | 25.0% |
| ! | AATTTGTAATTCATGAATGG+AGG | + | chr6_1:92616544-92616563 | Msa0898480:intron | 25.0% |
| ! | GAAGAGAATAATAATGAATC+AGG | + | chr6_1:92616626-92616645 | Msa0898480:intron | 25.0% |
| !!! | ATTGTAGTATTTTGGTTCAT+TGG | + | chr6_1:92617206-92617225 | Msa0898480:intron | 25.0% |
| !!! | AATTTTTTCCCATTTTCTTC+TGG | + | chr6_1:92617545-92617564 | Msa0898480:intron | 25.0% |
| ! | TTGAAAAATCATGTGAACTT+TGG | + | chr6_1:92617814-92617833 | Msa0898480:intron | 25.0% |
| ! | TGAAAAATCATGTGAACTTT+GGG | + | chr6_1:92617815-92617834 | Msa0898480:intron | 25.0% |
| !! | AACATTTTTCTTGTGCAATA+TGG | + | chr6_1:92617880-92617899 | Msa0898480:intron | 25.0% |
| ! | CCTGAAAATTGTAATAAAAC+AGG | - | chr6_1:92618066-92618085 | None:intergenic | 25.0% |
| !!! | CCTGTTTTATTACAATTTTC+AGG | + | chr6_1:92618063-92618082 | Msa0898480:intron | 25.0% |
| ! | ACAAAATAGATATTGTATCC+AGG | - | chr6_1:92618125-92618144 | None:intergenic | 25.0% |
| ! | GTCTAATCATTATTTCAAAG+AGG | + | chr6_1:92618373-92618392 | Msa0898480:three_prime_UTR | 25.0% |
| ! | GTGTATTGGATGAAATATAA+AGG | + | chr6_1:92618405-92618424 | Msa0898480:three_prime_UTR | 25.0% |
| ! | GATACACACTAATTATAACA+TGG | - | chr6_1:92618632-92618651 | None:intergenic | 25.0% |
| ! | AAATGCGATAAACAAATCAA+CGG | - | chr6_1:92618744-92618763 | None:intergenic | 25.0% |
| ! | CGCATTTCTTTAATAATTGT+CGG | + | chr6_1:92618757-92618776 | Msa0898480:intron | 25.0% |
| ! | GCATTTCTTTAATAATTGTC+GGG | + | chr6_1:92618758-92618777 | Msa0898480:intron | 25.0% |
| !! | TTCAAGTATCACTTCTAAAA+TGG | + | chr6_1:92618941-92618960 | Msa0898480:intron | 25.0% |
| !! | TTCTAACAAAACATGTTTTC+AGG | + | chr6_1:92618974-92618993 | Msa0898480:intron | 25.0% |
| ! | TAAAAAAGATGATTTGACTG+GGG | - | chr6_1:92619101-92619120 | None:intergenic | 25.0% |
| ! | AATATCAATCCTAGAATACT+TGG | - | chr6_1:92619151-92619170 | None:intergenic | 25.0% |
| ! | TGCAAATTATATACTTTCTG+TGG | - | chr6_1:92619316-92619335 | None:intergenic | 25.0% |
| !! | TAATTTGCAACACCTATATT+AGG | + | chr6_1:92619327-92619346 | Msa0898480:three_prime_UTR | 25.0% |
| ! | AATTTGCAACACCTATATTA+GGG | + | chr6_1:92619328-92619347 | Msa0898480:three_prime_UTR | 25.0% |
| ATATGCATTCAATCATGACT+TGG | - | chr6_1:92615476-92615495 | None:intergenic | 30.0% | |
| ! | CATGTGTTTAAAATGCAGAT+TGG | + | chr6_1:92615547-92615566 | Msa0898480:intron | 30.0% |
| TTACATCTATGGAATAGACA+AGG | + | chr6_1:92615734-92615753 | Msa0898480:intron | 30.0% | |
| !!! | GAGCTTTTGTTTTGAGTAAT+TGG | + | chr6_1:92616023-92616042 | Msa0898480:intron | 30.0% |
| ATTATTCTGTGAACTTCTGA+AGG | - | chr6_1:92616182-92616201 | None:intergenic | 30.0% | |
| ! | ATTTTCAAACTCTTCTCACA+TGG | - | chr6_1:92616217-92616236 | None:intergenic | 30.0% |
| ! | ACAAAGAAAGTGTACATCAA+GGG | - | chr6_1:92616314-92616333 | None:intergenic | 30.0% |
| ! | TACAAAGAAAGTGTACATCA+AGG | - | chr6_1:92616315-92616334 | None:intergenic | 30.0% |
| TATACTTATGACAGTGGAAT+TGG | + | chr6_1:92616383-92616402 | Msa0898480:intron | 30.0% | |
| ATACTTATGACAGTGGAATT+GGG | + | chr6_1:92616384-92616403 | Msa0898480:intron | 30.0% | |
| ATGAATGAAGGATCATATTG+AGG | + | chr6_1:92616680-92616699 | Msa0898480:intron | 30.0% | |
| GATCATATTGAGGAACATAA+AGG | + | chr6_1:92616690-92616709 | Msa0898480:intron | 30.0% | |
| !!! | AACACTATTTTGGAGTGTAA+AGG | - | chr6_1:92616866-92616885 | None:intergenic | 30.0% |
| TTACACTCCAAAATAGTGTT+TGG | + | chr6_1:92616866-92616885 | Msa0898480:intron | 30.0% | |
| TACACTCCAAAATAGTGTTT+GGG | + | chr6_1:92616867-92616886 | Msa0898480:intron | 30.0% | |
| TATGGAGCTCAATTCATAAT+TGG | + | chr6_1:92616924-92616943 | Msa0898480:intron | 30.0% | |
| TTGATGAATTGATGTTTGGA+TGG | + | chr6_1:92617231-92617250 | Msa0898480:intron | 30.0% | |
| TGATGAATTGATGTTTGGAT+GGG | + | chr6_1:92617232-92617251 | Msa0898480:intron | 30.0% | |
| AAATTCTAAATCTCACTCTC+AGG | + | chr6_1:92617455-92617474 | Msa0898480:CDS | 30.0% | |
| CTGAAAATCCAGAAGAAAAT+GGG | - | chr6_1:92617556-92617575 | None:intergenic | 30.0% | |
| ! | CTTCAGATTTCTTATTTGCA+TGG | + | chr6_1:92617609-92617628 | Msa0898480:intron | 30.0% |
| TAGAATATAGCACACATAAG+AGG | - | chr6_1:92617748-92617767 | None:intergenic | 30.0% | |
| GGTTCAATGTTAGTTGTAAA+GGG | - | chr6_1:92618045-92618064 | None:intergenic | 30.0% | |
| AGGTTCAATGTTAGTTGTAA+AGG | - | chr6_1:92618046-92618065 | None:intergenic | 30.0% | |
| !! | ATCAATTGATTTGACAGGTT+TGG | + | chr6_1:92618322-92618341 | Msa0898480:intron | 30.0% |
| AGAGGAAATTCAAAGTGTAT+TGG | + | chr6_1:92618391-92618410 | Msa0898480:three_prime_UTR | 30.0% | |
| AATAAACTTCACAGTAGACT+TGG | + | chr6_1:92618678-92618697 | Msa0898480:intron | 30.0% | |
| TTTAATAATTGTCGGGATCT+TGG | + | chr6_1:92618765-92618784 | Msa0898480:intron | 30.0% | |
| TTCAATTAGAACTTGAGTCA+GGG | + | chr6_1:92618813-92618832 | Msa0898480:intron | 30.0% | |
| AAGTGATACTTGAATTCCTT+TGG | - | chr6_1:92618935-92618954 | None:intergenic | 30.0% | |
| !! | TAACAAAACATGTTTTCAGG+AGG | + | chr6_1:92618977-92618996 | Msa0898480:intron | 30.0% |
| ! | TTTAAAGCTGTTGGAATTTC+TGG | + | chr6_1:92619007-92619026 | Msa0898480:three_prime_UTR | 30.0% |
| TTTGATCGATTGAGAGGATT+GGG | + | chr6_1:92615424-92615443 | Msa0898480:intron | 35.0% | |
| ! | TCCAGAATTTTTGTGTGTGA+TGG | + | chr6_1:92615521-92615540 | Msa0898480:intron | 35.0% |
| ACCATCACACACAAAAATTC+TGG | - | chr6_1:92615525-92615544 | None:intergenic | 35.0% | |
| CAATAAAAACCCATACCAGT+TGG | - | chr6_1:92615599-92615618 | None:intergenic | 35.0% | |
| ACAAGGTTAGATCATGATTC+TGG | + | chr6_1:92615751-92615770 | Msa0898480:intron | 35.0% | |
| !! | CATGTGAAACTGATTTGCAA+TGG | + | chr6_1:92615815-92615834 | Msa0898480:intron | 35.0% |
| !! | TGGTTTTGCTTTATGTCACA+AGG | + | chr6_1:92615835-92615854 | Msa0898480:intron | 35.0% |
| ! | GTACTGTGATTTTCCTATTG+TGG | + | chr6_1:92615915-92615934 | Msa0898480:intron | 35.0% |
| AGATTCCAGAACTATGATAC+AGG | - | chr6_1:92615987-92616006 | None:intergenic | 35.0% | |
| AGTAATTGGAAAAGGACTCA+AGG | + | chr6_1:92616037-92616056 | Msa0898480:intron | 35.0% | |
| GTAATTGGAAAAGGACTCAA+GGG | + | chr6_1:92616038-92616057 | Msa0898480:intron | 35.0% | |
| GACTCAAGGGTTATATCTTA+GGG | + | chr6_1:92616051-92616070 | Msa0898480:intron | 35.0% | |
| AGATTAGATTCCATGTCTTG+TGG | - | chr6_1:92616078-92616097 | None:intergenic | 35.0% | |
| AACTCGTTAGTTGCACATAT+TGG | + | chr6_1:92616105-92616124 | Msa0898480:intron | 35.0% | |
| ACTCGTTAGTTGCACATATT+GGG | + | chr6_1:92616106-92616125 | Msa0898480:intron | 35.0% | |
| AAACTCTTCTCACATGGTTT+AGG | - | chr6_1:92616211-92616230 | None:intergenic | 35.0% | |
| !! | CTGCTTTTGCTTGAATTGTT+TGG | + | chr6_1:92616342-92616361 | Msa0898480:intron | 35.0% |
| GCATTTGAACAATCACATCT+TGG | + | chr6_1:92616499-92616518 | Msa0898480:CDS | 35.0% | |
| AGACAATGATTCAAACTCCT+TGG | + | chr6_1:92616809-92616828 | Msa0898480:intron | 35.0% | |
| CGTATGACTTACTCAATTTC+AGG | + | chr6_1:92616834-92616853 | Msa0898480:intron | 35.0% | |
| AGCTCAATTCATAATTGGCT+GGG | + | chr6_1:92616929-92616948 | Msa0898480:intron | 35.0% | |
| ! | GGCTTTGATGAATTGATGTT+TGG | + | chr6_1:92617227-92617246 | Msa0898480:intron | 35.0% |
| ! | TGTTATCCTTTTGTCTGTGT+TGG | + | chr6_1:92617289-92617308 | Msa0898480:intron | 35.0% |
| TTTATGCCAACACAGACAAA+AGG | - | chr6_1:92617298-92617317 | None:intergenic | 35.0% | |
| TCATTGTATGTGATTCTGAC+AGG | + | chr6_1:92617388-92617407 | Msa0898480:intron | 35.0% | |
| TGCACAAAATAGTGAGTATG+TGG | - | chr6_1:92617498-92617517 | None:intergenic | 35.0% | |
| CCTGAAAATCCAGAAGAAAA+TGG | - | chr6_1:92617557-92617576 | None:intergenic | 35.0% | |
| ! | CCATTTTCTTCTGGATTTTC+AGG | + | chr6_1:92617554-92617573 | Msa0898480:intron | 35.0% |
| ! | GTTGCTTTGTATGTTTCATG+TGG | + | chr6_1:92617681-92617700 | Msa0898480:intron | 35.0% |
| ! | TCATGTGAACTTTGGGTTTA+AGG | + | chr6_1:92617822-92617841 | Msa0898480:intron | 35.0% |
| ! | CTATTTTGTGCGATTTCCAT+AGG | + | chr6_1:92618136-92618155 | Msa0898480:intron | 35.0% |
| ATCTCATCAGATAGATCCTA+TGG | - | chr6_1:92618155-92618174 | None:intergenic | 35.0% | |
| TCTATCTGATGAGATAGAAG+AGG | + | chr6_1:92618160-92618179 | Msa0898480:exon | 35.0% | |
| !! | TGTGCATCAATTGATTTGAC+AGG | + | chr6_1:92618317-92618336 | Msa0898480:intron | 35.0% |
| CTTCAATTAGAACTTGAGTC+AGG | + | chr6_1:92618812-92618831 | Msa0898480:intron | 35.0% | |
| TCAATTAGAACTTGAGTCAG+GGG | + | chr6_1:92618814-92618833 | Msa0898480:intron | 35.0% | |
| TCTCCAATCTATCTCAAGTT+AGG | + | chr6_1:92618871-92618890 | Msa0898480:intron | 35.0% | |
| TCAGCTTGCAGAAAAAAAAC+AGG | + | chr6_1:92619055-92619074 | Msa0898480:three_prime_UTR | 35.0% | |
| TTAGTCCAACCAAGTATTCT+AGG | + | chr6_1:92619139-92619158 | Msa0898480:three_prime_UTR | 35.0% | |
| TCAATCCTAGAATACTTGGT+TGG | - | chr6_1:92619147-92619166 | None:intergenic | 35.0% | |
| ATATACTTTCTGTGGTATGC+AGG | - | chr6_1:92619308-92619327 | None:intergenic | 35.0% | |
| AGCTAAGCTATCCCTAATAT+AGG | - | chr6_1:92619342-92619361 | None:intergenic | 35.0% | |
| TATTAGGGATAGCTTAGCTA+AGG | + | chr6_1:92619343-92619362 | Msa0898480:three_prime_UTR | 35.0% | |
| TAGACATGCATGCTGAAGAA+CGG | - | chr6_1:92615314-92615333 | None:intergenic | 40.0% | |
| TTCCTCTTTGATCGATTGAG+AGG | + | chr6_1:92615418-92615437 | Msa0898480:intron | 40.0% | |
| ATCCTCTCAATCGATCAAAG+AGG | - | chr6_1:92615423-92615442 | None:intergenic | 40.0% | |
| CTTTGATCGATTGAGAGGAT+TGG | + | chr6_1:92615423-92615442 | Msa0898480:intron | 40.0% | |
| TAGCACCTGTATCATAGTTC+TGG | + | chr6_1:92615979-92615998 | Msa0898480:intron | 40.0% | |
| GGACTCAAGGGTTATATCTT+AGG | + | chr6_1:92616050-92616069 | Msa0898480:intron | 40.0% | |
| TGTACATCAAGGGCAACAAA+AGG | - | chr6_1:92616304-92616323 | None:intergenic | 40.0% | |
| GAACAATCACATCTTGGACA+AGG | + | chr6_1:92616505-92616524 | Msa0898480:CDS | 40.0% | |
| TCTTGGACAAGGAAAACTCT+TGG | + | chr6_1:92616516-92616535 | Msa0898480:CDS | 40.0% | |
| CTTGGACAAGGAAAACTCTT+GGG | + | chr6_1:92616517-92616536 | Msa0898480:CDS | 40.0% | |
| !! | AATAACTTGGCCTTGCTAAG+TGG | + | chr6_1:92616765-92616784 | Msa0898480:intron | 40.0% |
| !! | ATAACTTGGCCTTGCTAAGT+GGG | + | chr6_1:92616766-92616785 | Msa0898480:intron | 40.0% |
| TGAGTAAGTCATACGTACCA+AGG | - | chr6_1:92616829-92616848 | None:intergenic | 40.0% | |
| ACTCCAAAATAGTGTTTGGG+TGG | + | chr6_1:92616870-92616889 | Msa0898480:intron | 40.0% | |
| ! | TCTCCACCCAAACACTATTT+TGG | - | chr6_1:92616876-92616895 | None:intergenic | 40.0% |
| GAGCTCAATTCATAATTGGC+TGG | + | chr6_1:92616928-92616947 | Msa0898480:intron | 40.0% | |
| AATTGGCTGGGAATTGATGT+TGG | + | chr6_1:92616941-92616960 | Msa0898480:intron | 40.0% | |
| ATTGGCTGGGAATTGATGTT+GGG | + | chr6_1:92616942-92616961 | Msa0898480:intron | 40.0% | |
| GAATTGATGTTGGGACAGAA+GGG | + | chr6_1:92616951-92616970 | Msa0898480:intron | 40.0% | |
| AATTGATGTTGGGACAGAAG+GGG | + | chr6_1:92616952-92616971 | Msa0898480:intron | 40.0% | |
| !! | AAGAAAAACAAGGAGGTGCT+TGG | + | chr6_1:92617014-92617033 | Msa0898480:intron | 40.0% |
| !! | AGAAAAACAAGGAGGTGCTT+GGG | + | chr6_1:92617015-92617034 | Msa0898480:intron | 40.0% |
| ATGAGGGTAAAGCATAGCAT+AGG | + | chr6_1:92617361-92617380 | Msa0898480:intron | 40.0% | |
| TATGTGATTCTGACAGGTTC+AGG | + | chr6_1:92617394-92617413 | Msa0898480:intron | 40.0% | |
| ! | CTGCAAGTTGAGTGGTTTAA+GGG | + | chr6_1:92617928-92617947 | Msa0898480:intron | 40.0% |
| ! | TGCAAGTTGAGTGGTTTAAG+GGG | + | chr6_1:92617929-92617948 | Msa0898480:intron | 40.0% |
| CGAATATCTCTTCTCTTCGA+AGG | + | chr6_1:92617998-92618017 | Msa0898480:intron | 40.0% | |
| !! | AACACAATGATGCTGTTTCC+TGG | + | chr6_1:92618104-92618123 | Msa0898480:intron | 40.0% |
| GCACAACCTGTCAAATAACT+GGG | - | chr6_1:92618232-92618251 | None:intergenic | 40.0% | |
| TGCACAACCTGTCAAATAAC+TGG | - | chr6_1:92618233-92618252 | None:intergenic | 40.0% | |
| GGTTGTGCATCAATCTTGAT+AGG | + | chr6_1:92618244-92618263 | Msa0898480:intron | 40.0% | |
| GTGTTACAGTGAAGCTGTTT+CGG | + | chr6_1:92618348-92618367 | Msa0898480:three_prime_UTR | 40.0% | |
| ATGCCATTACACAGGTTGTA+GGG | - | chr6_1:92618549-92618568 | None:intergenic | 40.0% | |
| AATGCCATTACACAGGTTGT+AGG | - | chr6_1:92618550-92618569 | None:intergenic | 40.0% | |
| CATTCGAAATGCCATTACAC+AGG | - | chr6_1:92618557-92618576 | None:intergenic | 40.0% | |
| TTTCGAATGTTGCGTCTCAA+TGG | + | chr6_1:92618568-92618587 | Msa0898480:intron | 40.0% | |
| AATGGCTATGATGTCTCTTC+AGG | + | chr6_1:92618586-92618605 | Msa0898480:intron | 40.0% | |
| ATACGAAGTACGTTGAGAAG+AGG | - | chr6_1:92618844-92618863 | None:intergenic | 40.0% | |
| TGGCCTAACTTGAGATAGAT+TGG | - | chr6_1:92618877-92618896 | None:intergenic | 40.0% | |
| TCAAGTTAGGCCAATCTCAA+GGG | + | chr6_1:92618884-92618903 | Msa0898480:intron | 40.0% | |
| ATGAATGTGTCCCTTGAGAT+TGG | - | chr6_1:92618897-92618916 | None:intergenic | 40.0% | |
| !! | GGAACTGTCTTTAAAGCTGT+TGG | + | chr6_1:92618998-92619017 | Msa0898480:three_prime_UTR | 40.0% |
| !! | GTGGCGATTAGTTTGTACGA+CGG | - | chr6_1:92615292-92615311 | None:intergenic | 45.0% |
| GTTCTTCAGCATGCATGTCT+AGG | + | chr6_1:92615313-92615332 | Msa0898480:five_prime_UTR | 45.0% | |
| ATCTTAGGGACCACAAGACA+TGG | + | chr6_1:92616065-92616084 | Msa0898480:intron | 45.0% | |
| GGAATTGATGTTGGGACAGA+AGG | + | chr6_1:92616950-92616969 | Msa0898480:intron | 45.0% | |
| TCTGACAGGTTCAGGTGTAT+TGG | + | chr6_1:92617402-92617421 | Msa0898480:intron | 45.0% | |
| GCTATCTCCTCTCATAGTGA+GGG | + | chr6_1:92617703-92617722 | Msa0898480:intron | 45.0% | |
| CTATCTCCTCTCATAGTGAG+GGG | + | chr6_1:92617704-92617723 | Msa0898480:intron | 45.0% | |
| ATAGTGAGGGGAAGGAACTA+CGG | + | chr6_1:92617716-92617735 | Msa0898480:intron | 45.0% | |
| ! | CAGATTAGCTGCAAGTTGAG+TGG | + | chr6_1:92617920-92617939 | Msa0898480:intron | 45.0% |
| ! | GCTGCAAGTTGAGTGGTTTA+AGG | + | chr6_1:92617927-92617946 | Msa0898480:intron | 45.0% |
| GAGATAGAAGAGGATCCTAC+TGG | + | chr6_1:92618170-92618189 | Msa0898480:exon | 45.0% | |
| ATAGAAGAGGATCCTACTGG+TGG | + | chr6_1:92618173-92618192 | Msa0898480:exon | 45.0% | |
| ! | ATCCTACTGGTGGATCAAGT+GGG | + | chr6_1:92618183-92618202 | Msa0898480:three_prime_UTR | 45.0% |
| AGACCCTACAACCTGTGTAA+TGG | + | chr6_1:92618543-92618562 | Msa0898480:intron | 45.0% | |
| CTCAAGTTAGGCCAATCTCA+AGG | + | chr6_1:92618883-92618902 | Msa0898480:intron | 45.0% | |
| !! | AGCATCGATAGTAGCATGTG+GGG | - | chr6_1:92619036-92619055 | None:intergenic | 45.0% |
| !! | GAGCATCGATAGTAGCATGT+GGG | - | chr6_1:92619037-92619056 | None:intergenic | 45.0% |
| !! | TGAGCATCGATAGTAGCATG+TGG | - | chr6_1:92619038-92619057 | None:intergenic | 45.0% |
| !! | GAAAAAAAAAAAAAAAATAT+TGG | + | chr6_1:92618494-92618513 | Msa0898480:intron | 5.0% |
| ACATGCATGCTGAAGAACGG+TGG | - | chr6_1:92615311-92615330 | None:intergenic | 50.0% | |
| TGAATCGCGTCCAACTGGTA+TGG | + | chr6_1:92615586-92615605 | Msa0898480:intron | 50.0% | |
| GAATCGCGTCCAACTGGTAT+GGG | + | chr6_1:92615587-92615606 | Msa0898480:intron | 50.0% | |
| TGTTGGGACAGAAGGGGAAT+TGG | + | chr6_1:92616958-92616977 | Msa0898480:intron | 50.0% | |
| GGCTATCTCCTCTCATAGTG+AGG | + | chr6_1:92617702-92617721 | Msa0898480:intron | 50.0% | |
| TTCCTTCCCCTCACTATGAG+AGG | - | chr6_1:92617713-92617732 | None:intergenic | 50.0% | |
| ! | GATCCTACTGGTGGATCAAG+TGG | + | chr6_1:92618182-92618201 | Msa0898480:three_prime_UTR | 50.0% |
| TGGGAGCAGGTGAAACTGAA+TGG | + | chr6_1:92618202-92618221 | Msa0898480:intron | 50.0% | |
| GGAGCTCCCAGTTATTTGAC+AGG | + | chr6_1:92618223-92618242 | Msa0898480:intron | 50.0% | |
| ! | TTGACGGCGGTGGTGTGTTT+TGG | - | chr6_1:92615240-92615259 | None:intergenic | 55.0% |
| CTCTCTGAATCGCGTCCAAC+TGG | + | chr6_1:92615581-92615600 | Msa0898480:five_prime_UTR | 55.0% | |
| !! | ACTTGGCCTTGCTAAGTGGG+TGG | + | chr6_1:92616769-92616788 | Msa0898480:intron | 55.0% |
| CCACTTCCACCCACTTAGCA+AGG | - | chr6_1:92616778-92616797 | None:intergenic | 55.0% | |
| CCTTGCTAAGTGGGTGGAAG+TGG | + | chr6_1:92616775-92616794 | Msa0898480:intron | 55.0% | |
| CTCCTCTCATAGTGAGGGGA+AGG | + | chr6_1:92617708-92617727 | Msa0898480:intron | 55.0% | |
| CTCCCACTTGATCCACCAGT+AGG | - | chr6_1:92618188-92618207 | None:intergenic | 55.0% | |
| GACGGCGACCACGAGATTGA+CGG | - | chr6_1:92615256-92615275 | None:intergenic | 60.0% | |
| GACGGCGACCACGAGATTGA+CGG | - | chr6_1:92615256-92615275 | None:intergenic | 60.0% | |
| ! | CTGGTGGATCAAGTGGGAGC+AGG | + | chr6_1:92618189-92618208 | Msa0898480:three_prime_UTR | 60.0% |
| CACCACCGCCGTCAATCTCG+TGG | + | chr6_1:92615245-92615264 | Msa0898480:intron | 65.0% | |
| GACCACGAGATTGACGGCGG+TGG | - | chr6_1:92615250-92615269 | None:intergenic | 65.0% | |
| GGCGACCACGAGATTGACGG+CGG | - | chr6_1:92615253-92615272 | None:intergenic | 65.0% | |
| CGTGGTCGCCGTCAATCTCG+TGG | + | chr6_1:92615263-92615282 | Msa0898480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 92615201 | 92619432 | 92615201 | ID=Msa0898480;Name=Msa0898480 |
| chr6_1 | mRNA | 92615201 | 92619432 | 92615201 | ID=Msa0898480-mRNA-1;Parent=Msa0898480;Name=Msa0898480-mRNA-1;_AED=0.34;_eAED=0.38;_QI=194|0.5|0.66|1|0.37|0.44|9|559|49 |
| chr6_1 | exon | 92615201 | 92615263 | 92615201 | ID=Msa0898480-mRNA-1:exon:15617;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92615285 | 92615334 | 92615285 | ID=Msa0898480-mRNA-1:exon:15618;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92615565 | 92615602 | 92615565 | ID=Msa0898480-mRNA-1:exon:15619;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92615857 | 92615888 | 92615857 | ID=Msa0898480-mRNA-1:exon:15620;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92616474 | 92616548 | 92616474 | ID=Msa0898480-mRNA-1:exon:15621;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92617410 | 92617476 | 92617410 | ID=Msa0898480-mRNA-1:exon:15622;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92618158 | 92618210 | 92618158 | ID=Msa0898480-mRNA-1:exon:15623;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92618339 | 92618426 | 92618339 | ID=Msa0898480-mRNA-1:exon:15624;Parent=Msa0898480-mRNA-1 |
| chr6_1 | exon | 92618996 | 92619432 | 92618996 | ID=Msa0898480-mRNA-1:exon:15625;Parent=Msa0898480-mRNA-1 |
| chr6_1 | five_prime_UTR | 92615201 | 92615263 | 92615201 | ID=Msa0898480-mRNA-1:five_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | five_prime_UTR | 92615285 | 92615334 | 92615285 | ID=Msa0898480-mRNA-1:five_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | five_prime_UTR | 92615565 | 92615602 | 92615565 | ID=Msa0898480-mRNA-1:five_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | five_prime_UTR | 92615857 | 92615888 | 92615857 | ID=Msa0898480-mRNA-1:five_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | five_prime_UTR | 92616474 | 92616484 | 92616474 | ID=Msa0898480-mRNA-1:five_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | CDS | 92616485 | 92616548 | 92616485 | ID=Msa0898480-mRNA-1:cds;Parent=Msa0898480-mRNA-1 |
| chr6_1 | CDS | 92617410 | 92617476 | 92617410 | ID=Msa0898480-mRNA-1:cds;Parent=Msa0898480-mRNA-1 |
| chr6_1 | CDS | 92618158 | 92618176 | 92618158 | ID=Msa0898480-mRNA-1:cds;Parent=Msa0898480-mRNA-1 |
| chr6_1 | three_prime_UTR | 92618177 | 92618210 | 92618177 | ID=Msa0898480-mRNA-1:three_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | three_prime_UTR | 92618339 | 92618426 | 92618339 | ID=Msa0898480-mRNA-1:three_prime_utr;Parent=Msa0898480-mRNA-1 |
| chr6_1 | three_prime_UTR | 92618996 | 92619432 | 92618996 | ID=Msa0898480-mRNA-1:three_prime_utr;Parent=Msa0898480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
