AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAAGCTGTTGGAATTTA+TGG 0.093237 6_1:-91980507 Msa0898420:three_prime_UTR
AGGAAAATAAACTTCAAATT+TGG 0.150009 6_1:-91982826 Msa0898420:five_prime_UTR
TTACATAGTTTAATATTTAT+TGG 0.159942 6_1:-91982368 Msa0898420:five_prime_UTR
AGTCAAATCATCTTTCTTAT+TGG 0.170911 6_1:-91980264 Msa0898420:three_prime_UTR
TCTCCACCCAAACACTATTT+TGG 0.205565 6_1:+91982663 None:intergenic
ATGAGTATATTGTAGTATTT+TGG 0.206479 6_1:-91982338 Msa0898420:five_prime_UTR
ACATATTGTGATTACATCTA+TGG 0.210486 6_1:-91983813 Msa0898420:five_prime_UTR
TTAGTCCAACCAAGTATTCT+AGG 0.256388 6_1:-91980229 Msa0898420:three_prime_UTR
TTAGTCCAACCAAGTATTCT+AGG 0.256388 6_1:-91980373 Msa0898420:three_prime_UTR
CGTATGACTTACTCAATTTC+AGG 0.262891 6_1:-91982702 Msa0898420:five_prime_UTR
GATTTCTTATTATAGAATTA+AGG 0.271180 6_1:-91981922 Msa0898420:intron
TTCTCATATTCATTTAAGTA+TGG 0.305550 6_1:-91982630 Msa0898420:five_prime_UTR
TATGGAGCTCAATTCATAAT+TGG 0.316553 6_1:-91982612 Msa0898420:five_prime_UTR
TCAGAAGAAGATACTTAAAA+AGG 0.321134 6_1:-91983669 Msa0898420:intron
TTACACTCCAAAATAGTGTT+TGG 0.336587 6_1:-91982670 Msa0898420:five_prime_UTR
TTGACGGCGGTGGTGTGTTT+TGG 0.343920 6_1:+91984281 None:intergenic
ATTTATATTGCTTGAAATGA+GGG 0.361859 6_1:-91982191 Msa0898420:CDS
GGCTTTGATGAATTGATGTT+TGG 0.367181 6_1:-91982309 Msa0898420:five_prime_UTR
TGGCCTAACTTGAGATAGAT+TGG 0.372438 6_1:+91980640 None:intergenic
TCTCCAATCTATCTCAAGTT+AGG 0.373052 6_1:-91980643 Msa0898420:three_prime_UTR
TCTGACAGGTTCAGGTGTAT+TGG 0.383747 6_1:-91982134 Msa0898420:CDS
GAAGAGAATAATAATGAATC+AGG 0.386396 6_1:-91982910 Msa0898420:five_prime_UTR
CTCTCTGAATCGCGTCCAAC+TGG 0.394223 6_1:-91983955 Msa0898420:intron
TACACTCCAAAATAGTGTTT+GGG 0.413303 6_1:-91982669 Msa0898420:five_prime_UTR
TATGTGATTCTGACAGGTTC+AGG 0.414912 6_1:-91982142 Msa0898420:CDS
GGAACTGTCTTTAAAGCTGT+TGG 0.420625 6_1:-91980516 Msa0898420:three_prime_UTR
GTGTATTGGATGAAATATAA+AGG 0.428721 6_1:-91981104 Msa0898420:intron
AGAGGAAATTCAAAGTGTAT+TGG 0.440311 6_1:-91981118 Msa0898420:three_prime_UTR
CTTCAGTTAGAACTTGAGTC+AGG 0.445415 6_1:-91980702 Msa0898420:three_prime_UTR
AATATCAATCCTAGAATACT+TGG 0.446462 6_1:+91980220 None:intergenic
AATATCAATCCTAGAATACT+TGG 0.446462 6_1:+91980364 None:intergenic
TTGATGAATTGATGTTTGGA+TGG 0.446739 6_1:-91982305 Msa0898420:exon
AATTTATATTGCTTGAAATG+AGG 0.455939 6_1:-91982192 Msa0898420:CDS
GGAATTGATGTTGGGACAGA+AGG 0.457367 6_1:-91982586 Msa0898420:five_prime_UTR
GCATTTGAACAATCACATCT+TGG 0.460376 6_1:-91983037 Msa0898420:five_prime_UTR
GAGCTCAATTCATAATTGGC+TGG 0.465906 6_1:-91982608 Msa0898420:five_prime_UTR
GATCATATTGAGGAACATAA+AGG 0.468197 6_1:-91982846 Msa0898420:five_prime_UTR
AATAACTTGGCCTTGCTAAG+TGG 0.469693 6_1:-91982771 Msa0898420:five_prime_UTR
TCATTGTATGTGATTCTGAC+AGG 0.481539 6_1:-91982148 Msa0898420:CDS
AGAAATTTGTAATTCATGAA+TGG 0.483187 6_1:-91982995 Msa0898420:five_prime_UTR
CCTTGCTAAGTGGGTGGAAG+TGG 0.490298 6_1:-91982761 Msa0898420:five_prime_UTR
AAATTCTAAATCTCACTCTC+AGG 0.492072 6_1:-91982081 Msa0898420:intron
TCTTGGACAAGGAAAACTCT+TGG 0.495492 6_1:-91983020 Msa0898420:five_prime_UTR
AATAAGAAAGATGATTTGAC+TGG 0.502511 6_1:+91980266 None:intergenic
GTTCTTCAGCATGCATGTCT+AGG 0.512038 6_1:-91984223 Msa0898420:intron
ATAACTTGGCCTTGCTAAGT+GGG 0.519019 6_1:-91982770 Msa0898420:five_prime_UTR
TGATGAATTGATGTTTGGAT+GGG 0.521743 6_1:-91982304 Msa0898420:exon
CTTGGACAAGGAAAACTCTT+GGG 0.522312 6_1:-91983019 Msa0898420:five_prime_UTR
AATTGGCTGGGAATTGATGT+TGG 0.524589 6_1:-91982595 Msa0898420:five_prime_UTR
ATGAATGTGTACCTTGAGAT+TGG 0.527641 6_1:+91980620 None:intergenic
CTGGTGGATCAAGTGGGAGC+AGG 0.534464 6_1:-91981320 Msa0898420:intron
AAACTGATGCAAAATTGCTC+TGG 0.537490 6_1:+91983838 None:intergenic
ATTGGCTGGGAATTGATGTT+GGG 0.537914 6_1:-91982594 Msa0898420:five_prime_UTR
AGACACTGATTCAAACTCCT+TGG 0.537921 6_1:-91982727 Msa0898420:five_prime_UTR
TTTATGCCAACACAGACAAA+AGG 0.538930 6_1:+91982241 None:intergenic
ATGAATGAAGGATCATATTG+AGG 0.540239 6_1:-91982856 Msa0898420:five_prime_UTR
AGCTCAATTCATAATTGGCT+GGG 0.543113 6_1:-91982607 Msa0898420:five_prime_UTR
GATCCTACTGGTGGATCAAG+TGG 0.545710 6_1:-91981327 Msa0898420:CDS
GAGAAAATAAAGAAATAACT+TGG 0.551583 6_1:-91982784 Msa0898420:five_prime_UTR
GAATTGATGTTGGGACAGAA+GGG 0.557524 6_1:-91982585 Msa0898420:five_prime_UTR
GAGATAGAAGAGGATCCTAC+TGG 0.558794 6_1:-91981339 Msa0898420:CDS
TTCAGTTAGAACTTGAGTCA+GGG 0.560741 6_1:-91980701 Msa0898420:three_prime_UTR
GTCTAATCATCATTTCAAAG+AGG 0.562174 6_1:-91981136 Msa0898420:exon
GACGGCGACCACGAGATTGA+CGG 0.583527 6_1:+91984265 None:intergenic
TCAATCCTAGAATACTTGGT+TGG 0.584321 6_1:+91980224 None:intergenic
TCAATCCTAGAATACTTGGT+TGG 0.584321 6_1:+91980368 None:intergenic
AATTTGTAATTCATGAATGG+AGG 0.596085 6_1:-91982992 Msa0898420:five_prime_UTR
ACTCCAAAATAGTGTTTGGG+TGG 0.597737 6_1:-91982666 Msa0898420:five_prime_UTR
AATTGATGTTGGGACAGAAG+GGG 0.599240 6_1:-91982584 Msa0898420:five_prime_UTR
GAGCATCGATAGTAGCATGT+GGG 0.602347 6_1:+91980480 None:intergenic
CCACTTCCACCCACTTAGCA+AGG 0.612812 6_1:+91982761 None:intergenic
ATAGAAGAGGATCCTACTGG+TGG 0.614179 6_1:-91981336 Msa0898420:CDS
ATCCTACTGGTGGATCAAGT+GGG 0.614534 6_1:-91981326 Msa0898420:CDS
ATACGAAGTACGTTGAGAAG+AGG 0.621494 6_1:+91980673 None:intergenic
ATGAGGGTAAAGCATAGCAT+AGG 0.621957 6_1:-91982175 Msa0898420:CDS
CACCACCGCCGTCAATCTCG+TGG 0.622956 6_1:-91984273 Msa0898420:five_prime_UTR
GACCACGAGATTGACGGCGG+TGG 0.624242 6_1:+91984271 None:intergenic
CTCAAGTTAGGCCAATCTCA+AGG 0.626948 6_1:-91980631 Msa0898420:intron
GAACAATCACATCTTGGACA+AGG 0.630238 6_1:-91983031 Msa0898420:five_prime_UTR
TAGACATGCATGCTGAAGAA+CGG 0.634330 6_1:+91984225 None:intergenic
ACTTGGCCTTGCTAAGTGGG+TGG 0.635988 6_1:-91982767 Msa0898420:five_prime_UTR
TCAGTTAGAACTTGAGTCAG+GGG 0.637166 6_1:-91980700 Msa0898420:three_prime_UTR
TGTATCTGATGAGATAGAAG+AGG 0.638499 6_1:-91981349 Msa0898420:CDS
AGCATCGATAGTAGCATGTG+GGG 0.640067 6_1:+91980481 None:intergenic
TGAGTAAGTCATACGTACCA+AGG 0.642580 6_1:+91982710 None:intergenic
AGAGCATCGATAGTAGCATG+TGG 0.649753 6_1:+91980479 None:intergenic
CTCCCACTTGATCCACCAGT+AGG 0.659602 6_1:+91981324 None:intergenic
ACATGCATGCTGAAGAACGG+TGG 0.703164 6_1:+91984228 None:intergenic
GTGGCGATTAGTTTGTACGA+CGG 0.729072 6_1:+91984247 None:intergenic
GGCGACCACGAGATTGACGG+CGG 0.731323 6_1:+91984268 None:intergenic
TTACATCTATGGAATAGACA+AGG 0.740340 6_1:-91983802 Msa0898420:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTAATCAAAATTTTAT+AGG + chr6_1:91981192-91981211 None:intergenic 10.0%
!! ATTAAAAAAATAATGAATGA+AGG - chr6_1:91981616-91981635 Msa0898420:intron 10.0%
!!! TTTCTTATATTTTGATAATT+TGG - chr6_1:91982089-91982108 Msa0898420:CDS 10.0%
!! TTACATAGTTTAATATTTAT+TGG - chr6_1:91982116-91982135 Msa0898420:CDS 10.0%
!!! TATTTTCTAAAATGTAATTT+TGG - chr6_1:91982635-91982654 Msa0898420:five_prime_UTR 10.0%
!!! TGTATTATATTTTATCTTAT+AGG + chr6_1:91982761-91982780 None:intergenic 10.0%
!! TGTGAAAAAAAAAAAAATAT+TGG - chr6_1:91983464-91983483 Msa0898420:intron 10.0%
!! CAAAATAATAATCAATAAAG+TGG + chr6_1:91980602-91980621 None:intergenic 15.0%
!! AAGTATAATATGATAGAAAT+AGG + chr6_1:91981318-91981337 None:intergenic 15.0%
!! TACAAAAATTAAATAAACAG+AGG + chr6_1:91981396-91981415 None:intergenic 15.0%
!! AGATTATTAAAAGAAAAACA+AGG - chr6_1:91981952-91981971 Msa0898420:intron 15.0%
!! GATTTCTTATTATAGAATTA+AGG - chr6_1:91982562-91982581 Msa0898420:five_prime_UTR 15.0%
!! TTTCTTTATAAATTGATGAA+AGG - chr6_1:91983257-91983276 Msa0898420:intron 15.0%
!! AAACAAACAACACAAAAAAA+AGG + chr6_1:91980301-91980320 None:intergenic 20.0%
!!! TTTTTATTGATCTCATTTGA+TGG - chr6_1:91980395-91980414 Msa0898420:three_prime_UTR 20.0%
!!! GTTTTTTTGTTGTAAATATG+AGG - chr6_1:91980570-91980589 Msa0898420:intron 20.0%
!!! TTTTGATTTAATTGTGTTTG+AGG - chr6_1:91980617-91980636 Msa0898420:intron 20.0%
!!! TCTATCATGTTATATTCTTT+TGG - chr6_1:91981369-91981388 Msa0898420:intron 20.0%
!!! TTATTTAATTTTTGTAGTGC+AGG - chr6_1:91981400-91981419 Msa0898420:intron 20.0%
!! AGAAATTTGTAATTCATGAA+TGG - chr6_1:91981489-91981508 Msa0898420:intron 20.0%
!! AGGAAAATAAACTTCAAATT+TGG - chr6_1:91981658-91981677 Msa0898420:intron 20.0%
!! GAGAAAATAAAGAAATAACT+TGG - chr6_1:91981700-91981719 Msa0898420:intron 20.0%
!! TTCTCATATTCATTTAAGTA+TGG - chr6_1:91981854-91981873 Msa0898420:intron 20.0%
!! TTATTAAAAGAAAAACAAGG+AGG - chr6_1:91981955-91981974 Msa0898420:intron 20.0%
!!! ATGAGTATATTGTAGTATTT+TGG - chr6_1:91982146-91982165 Msa0898420:CDS 20.0%
!! AATTTATATTGCTTGAAATG+AGG - chr6_1:91982292-91982311 Msa0898420:exon 20.0%
!! ATTTATATTGCTTGAAATGA+GGG - chr6_1:91982293-91982312 Msa0898420:exon 20.0%
!!! AAACTTTTCATTTTCATGTA+TGG - chr6_1:91983422-91983441 Msa0898420:intron 20.0%
!!! AAAAAAAAATATTGGCTACA+AGG - chr6_1:91983472-91983491 Msa0898420:intron 20.0%
!!! TAATTAGTGTGTATCATTTT+TGG - chr6_1:91983607-91983626 Msa0898420:intron 20.0%
!! GACAATAATGAAATCATATT+TGG + chr6_1:91983687-91983706 None:intergenic 20.0%
!! GCATTTCTTTAATAATTGTT+GGG - chr6_1:91983728-91983747 Msa0898420:intron 20.0%
!!! TATATCATTTTTGAATCCAA+AGG - chr6_1:91983886-91983905 Msa0898420:intron 20.0%
!! ATAAAAAAGATGATTTGACT+GGG + chr6_1:91984074-91984093 None:intergenic 20.0%
!! AATAAAAAAGATGATTTGAC+TGG + chr6_1:91984075-91984094 None:intergenic 20.0%
!!! AGTCAAATCATCTTTTTTAT+TGG - chr6_1:91984074-91984093 Msa0898420:intron 20.0%
!!! TTTTCTCTCCTTTTTTGATT+TGG - chr6_1:91980330-91980349 Msa0898420:three_prime_UTR 25.0%
! TAAAACAGCCAAATCAAAAA+AGG + chr6_1:91980341-91980360 None:intergenic 25.0%
!! ATGTGTTTAAAATGCAGATT+GGG - chr6_1:91980496-91980515 Msa0898420:three_prime_UTR 25.0%
! ACATATTGTGATTACATCTA+TGG - chr6_1:91980671-91980690 Msa0898420:three_prime_UTR 25.0%
! TCAGAAGAAGATACTTAAAA+AGG - chr6_1:91980815-91980834 Msa0898420:intron 25.0%
! TAGATAATTAAAGCCACAAT+AGG + chr6_1:91980879-91980898 None:intergenic 25.0%
!!! TTGTTTTGAGTAATTGGAAA+AGG - chr6_1:91980977-91980996 Msa0898420:intron 25.0%
!! CTGAAGGATTTTATATATAC+AGG + chr6_1:91981114-91981133 None:intergenic 25.0%
!! CAAGTATGAAACTATAGTTT+TGG - chr6_1:91981214-91981233 Msa0898420:intron 25.0%
! TCATATTATACTTATGACAG+TGG - chr6_1:91981325-91981344 Msa0898420:CDS 25.0%
! AATTTGTAATTCATGAATGG+AGG - chr6_1:91981492-91981511 Msa0898420:intron 25.0%
! GAAGAGAATAATAATGAATC+AGG - chr6_1:91981574-91981593 Msa0898420:intron 25.0%
!!! ATTGTAGTATTTTGGTTCAT+TGG - chr6_1:91982154-91982173 Msa0898420:CDS 25.0%
! TTGAAAAATCATGTGAACTT+TGG - chr6_1:91982790-91982809 Msa0898420:five_prime_UTR 25.0%
! TGAAAAATCATGTGAACTTT+GGG - chr6_1:91982791-91982810 Msa0898420:five_prime_UTR 25.0%
!! AACATTTTTCTTGTGCAATA+TGG - chr6_1:91982858-91982877 Msa0898420:five_prime_UTR 25.0%
! ACAAAATAGATATTGTATCC+AGG + chr6_1:91983100-91983119 None:intergenic 25.0%
!! GATACAATATCTATTTTGTG+CGG - chr6_1:91983101-91983120 Msa0898420:intron 25.0%
! GTGTATTGGATGAAATATAA+AGG - chr6_1:91983380-91983399 Msa0898420:intron 25.0%
! GATACACACTAATTATAACA+TGG + chr6_1:91983602-91983621 None:intergenic 25.0%
! AAATGCGATAAACAAATCAA+CGG + chr6_1:91983714-91983733 None:intergenic 25.0%
! CGCATTTCTTTAATAATTGT+TGG - chr6_1:91983727-91983746 Msa0898420:intron 25.0%
! TTTAATAATTGTTGGGATCT+TGG - chr6_1:91983735-91983754 Msa0898420:intron 25.0%
!! TTCAAGTATCACTTCTAAAA+TGG - chr6_1:91983911-91983930 Msa0898420:intron 25.0%
!! TTCTAACAAAACATGTTTTC+AGG - chr6_1:91983944-91983963 Msa0898420:intron 25.0%
!! TTTAAAGCTGTTGGAATTTA+TGG - chr6_1:91983977-91983996 Msa0898420:intron 25.0%
! TAAAAAAGATGATTTGACTG+GGG + chr6_1:91984073-91984092 None:intergenic 25.0%
! AATATCAATCCTAGAATACT+TGG + chr6_1:91984123-91984142 None:intergenic 25.0%
! AATAAGAAAGATGATTTGAC+TGG + chr6_1:91984221-91984240 None:intergenic 25.0%
! AGTCAAATCATCTTTCTTAT+TGG - chr6_1:91984220-91984239 Msa0898420:intron 25.0%
! AATATCAATCCTAGAATACT+TGG + chr6_1:91984123-91984142 None:intergenic 25.0%
ATATGCATTCAATCATGACT+TGG + chr6_1:91980424-91980443 None:intergenic 30.0%
! CATGTGTTTAAAATGCAGAT+TGG - chr6_1:91980495-91980514 Msa0898420:three_prime_UTR 30.0%
TTACATCTATGGAATAGACA+AGG - chr6_1:91980682-91980701 Msa0898420:three_prime_UTR 30.0%
!!! GAGCTTTTGTTTTGAGTAAT+TGG - chr6_1:91980971-91980990 Msa0898420:intron 30.0%
ATTATTCTGTGAACTTCTGA+AGG + chr6_1:91981130-91981149 None:intergenic 30.0%
! ATTTTCAAACTCTTCTCACA+TGG + chr6_1:91981165-91981184 None:intergenic 30.0%
! ACAAAGAAAGTGTACATCAA+GGG + chr6_1:91981262-91981281 None:intergenic 30.0%
! TACAAAGAAAGTGTACATCA+AGG + chr6_1:91981263-91981282 None:intergenic 30.0%
TATACTTATGACAGTGGAAT+TGG - chr6_1:91981331-91981350 Msa0898420:CDS 30.0%
ATACTTATGACAGTGGAATT+GGG - chr6_1:91981332-91981351 Msa0898420:CDS 30.0%
ATGAATGAAGGATCATATTG+AGG - chr6_1:91981628-91981647 Msa0898420:intron 30.0%
GATCATATTGAGGAACATAA+AGG - chr6_1:91981638-91981657 Msa0898420:intron 30.0%
!!! AACACTATTTTGGAGTGTAA+AGG + chr6_1:91981814-91981833 None:intergenic 30.0%
TTACACTCCAAAATAGTGTT+TGG - chr6_1:91981814-91981833 Msa0898420:intron 30.0%
TACACTCCAAAATAGTGTTT+GGG - chr6_1:91981815-91981834 Msa0898420:intron 30.0%
TATGGAGCTCAATTCATAAT+TGG - chr6_1:91981872-91981891 Msa0898420:intron 30.0%
TTGATGAATTGATGTTTGGA+TGG - chr6_1:91982179-91982198 Msa0898420:CDS 30.0%
TGATGAATTGATGTTTGGAT+GGG - chr6_1:91982180-91982199 Msa0898420:CDS 30.0%
AAATTCTAAATCTCACTCTC+AGG - chr6_1:91982403-91982422 Msa0898420:five_prime_UTR 30.0%
TAGAATATAGCACACATAAG+AGG + chr6_1:91982724-91982743 None:intergenic 30.0%
CACAAGAAAAATGTTCACAA+AGG + chr6_1:91982853-91982872 None:intergenic 30.0%
CGAATATCTCTTCTCTTATA+AGG - chr6_1:91982976-91982995 Msa0898420:five_prime_UTR 30.0%
GGTTCAATGTTAGTTGTAAA+GGG + chr6_1:91983023-91983042 None:intergenic 30.0%
AGGTTCAATGTTAGTTGTAA+AGG + chr6_1:91983024-91983043 None:intergenic 30.0%
! GAACCTGTTTTACAATTTTC+AGG - chr6_1:91983038-91983057 Msa0898420:five_prime_UTR 30.0%
CTACCTGAAAATTGTAAAAC+AGG + chr6_1:91983044-91983063 None:intergenic 30.0%
!! ATCAATTGATTTGACAGGTT+TGG - chr6_1:91983297-91983316 Msa0898420:intron 30.0%
GTCTAATCATCATTTCAAAG+AGG - chr6_1:91983348-91983367 Msa0898420:intron 30.0%
AGAGGAAATTCAAAGTGTAT+TGG - chr6_1:91983366-91983385 Msa0898420:intron 30.0%
AATAAACTTCACAGTAGACT+TGG - chr6_1:91983648-91983667 Msa0898420:intron 30.0%
AAGTGATACTTGAATTCCTT+TGG + chr6_1:91983905-91983924 None:intergenic 30.0%
!! TAACAAAACATGTTTTCAGG+AGG - chr6_1:91983947-91983966 Msa0898420:intron 30.0%
TGCTTGCAGAAAAAAAAAAC+AGG - chr6_1:91984027-91984046 Msa0898420:intron 30.0%
TTTGATCGATTGAGAGGATT+GGG - chr6_1:91980372-91980391 Msa0898420:three_prime_UTR 35.0%
! TCCAGAATTTTTGTGTGTGA+TGG - chr6_1:91980469-91980488 Msa0898420:three_prime_UTR 35.0%
ACCATCACACACAAAAATTC+TGG + chr6_1:91980473-91980492 None:intergenic 35.0%
CAATAAAAACCCATACCAGT+TGG + chr6_1:91980547-91980566 None:intergenic 35.0%
AAACTGATGCAAAATTGCTC+TGG + chr6_1:91980649-91980668 None:intergenic 35.0%
ACAAGGTTAGATCATGATTC+TGG - chr6_1:91980699-91980718 Msa0898420:three_prime_UTR 35.0%
!! CATGTGAAACTGATTTGCAA+TGG - chr6_1:91980763-91980782 Msa0898420:intron 35.0%
!! TGGTTTTGCTTTATGTCACA+AGG - chr6_1:91980783-91980802 Msa0898420:intron 35.0%
! GTACTGTGATTTTCCTATTG+TGG - chr6_1:91980863-91980882 Msa0898420:intron 35.0%
AGATTCCAGAACTATGATAC+AGG + chr6_1:91980935-91980954 None:intergenic 35.0%
AGTAATTGGAAAAGGACTCA+AGG - chr6_1:91980985-91981004 Msa0898420:intron 35.0%
GTAATTGGAAAAGGACTCAA+GGG - chr6_1:91980986-91981005 Msa0898420:intron 35.0%
GACTCAAGGGTTATATCTTA+GGG - chr6_1:91980999-91981018 Msa0898420:intron 35.0%
AGATTAGATTCCATGTCTTG+TGG + chr6_1:91981026-91981045 None:intergenic 35.0%
AAACTCTTCTCACATGGTTT+AGG + chr6_1:91981159-91981178 None:intergenic 35.0%
!! CTGCTTTTGCTTGAATTGTT+TGG - chr6_1:91981290-91981309 Msa0898420:intron 35.0%
GCATTTGAACAATCACATCT+TGG - chr6_1:91981447-91981466 Msa0898420:intron 35.0%
CGTATGACTTACTCAATTTC+AGG - chr6_1:91981782-91981801 Msa0898420:intron 35.0%
AGCTCAATTCATAATTGGCT+GGG - chr6_1:91981877-91981896 Msa0898420:intron 35.0%
! GGCTTTGATGAATTGATGTT+TGG - chr6_1:91982175-91982194 Msa0898420:CDS 35.0%
! TGTTATCCTTTTGTCTGTGT+TGG - chr6_1:91982237-91982256 Msa0898420:CDS 35.0%
TTTATGCCAACACAGACAAA+AGG + chr6_1:91982246-91982265 None:intergenic 35.0%
TCATTGTATGTGATTCTGAC+AGG - chr6_1:91982336-91982355 Msa0898420:five_prime_UTR 35.0%
! AATTTTCTCCCATTTTCCTC+TGG - chr6_1:91982493-91982512 Msa0898420:five_prime_UTR 35.0%
CTGAAAATCCAGAGGAAAAT+GGG + chr6_1:91982504-91982523 None:intergenic 35.0%
TAAATCCACGCAAATAAGTG+AGG + chr6_1:91982593-91982612 None:intergenic 35.0%
! GTTGCTTTGTATGTTTCATG+TGG - chr6_1:91982657-91982676 Msa0898420:five_prime_UTR 35.0%
! TCATGTGAACTTTGGGTTTA+AGG - chr6_1:91982798-91982817 Msa0898420:five_prime_UTR 35.0%
ATCTCATCAGATACATCCTA+TGG + chr6_1:91983130-91983149 None:intergenic 35.0%
TGTATCTGATGAGATAGAAG+AGG - chr6_1:91983135-91983154 Msa0898420:intron 35.0%
!! TGTGCATCAATTGATTTGAC+AGG - chr6_1:91983292-91983311 Msa0898420:intron 35.0%
TTCAGTTAGAACTTGAGTCA+GGG - chr6_1:91983783-91983802 Msa0898420:intron 35.0%
TCTCCAATCTATCTCAAGTT+AGG - chr6_1:91983841-91983860 Msa0898420:five_prime_UTR 35.0%
ATGAATGTGTACCTTGAGAT+TGG + chr6_1:91983867-91983886 None:intergenic 35.0%
TTAGTCCAACCAAGTATTCT+AGG - chr6_1:91984111-91984130 Msa0898420:intron 35.0%
TCAATCCTAGAATACTTGGT+TGG + chr6_1:91984119-91984138 None:intergenic 35.0%
TTAGTCCAACCAAGTATTCT+AGG - chr6_1:91984111-91984130 Msa0898420:intron 35.0%
TCAATCCTAGAATACTTGGT+TGG + chr6_1:91984119-91984138 None:intergenic 35.0%
TAGACATGCATGCTGAAGAA+CGG + chr6_1:91980262-91980281 None:intergenic 40.0%
TTCCTCTTTGATCGATTGAG+AGG - chr6_1:91980366-91980385 Msa0898420:three_prime_UTR 40.0%
ATCCTCTCAATCGATCAAAG+AGG + chr6_1:91980371-91980390 None:intergenic 40.0%
CTTTGATCGATTGAGAGGAT+TGG - chr6_1:91980371-91980390 Msa0898420:three_prime_UTR 40.0%
TAGCACCTGTATCATAGTTC+TGG - chr6_1:91980927-91980946 Msa0898420:intron 40.0%
GGACTCAAGGGTTATATCTT+AGG - chr6_1:91980998-91981017 Msa0898420:intron 40.0%
AACTCGTTAGTTGCACGTAT+TGG - chr6_1:91981053-91981072 Msa0898420:intron 40.0%
ACTCGTTAGTTGCACGTATT+GGG - chr6_1:91981054-91981073 Msa0898420:intron 40.0%
TGTACATCAAGGGCAACAAA+AGG + chr6_1:91981252-91981271 None:intergenic 40.0%
GAACAATCACATCTTGGACA+AGG - chr6_1:91981453-91981472 Msa0898420:intron 40.0%
TCTTGGACAAGGAAAACTCT+TGG - chr6_1:91981464-91981483 Msa0898420:intron 40.0%
CTTGGACAAGGAAAACTCTT+GGG - chr6_1:91981465-91981484 Msa0898420:intron 40.0%
!! AATAACTTGGCCTTGCTAAG+TGG - chr6_1:91981713-91981732 Msa0898420:intron 40.0%
!! ATAACTTGGCCTTGCTAAGT+GGG - chr6_1:91981714-91981733 Msa0898420:intron 40.0%
!! AGACACTGATTCAAACTCCT+TGG - chr6_1:91981757-91981776 Msa0898420:intron 40.0%
TGAGTAAGTCATACGTACCA+AGG + chr6_1:91981777-91981796 None:intergenic 40.0%
ACTCCAAAATAGTGTTTGGG+TGG - chr6_1:91981818-91981837 Msa0898420:intron 40.0%
! TCTCCACCCAAACACTATTT+TGG + chr6_1:91981824-91981843 None:intergenic 40.0%
GAGCTCAATTCATAATTGGC+TGG - chr6_1:91981876-91981895 Msa0898420:intron 40.0%
AATTGGCTGGGAATTGATGT+TGG - chr6_1:91981889-91981908 Msa0898420:intron 40.0%
ATTGGCTGGGAATTGATGTT+GGG - chr6_1:91981890-91981909 Msa0898420:intron 40.0%
GAATTGATGTTGGGACAGAA+GGG - chr6_1:91981899-91981918 Msa0898420:intron 40.0%
AATTGATGTTGGGACAGAAG+GGG - chr6_1:91981900-91981919 Msa0898420:intron 40.0%
! AAGAAAAACAAGGAGGTGCA+TGG - chr6_1:91981962-91981981 Msa0898420:intron 40.0%
! AGAAAAACAAGGAGGTGCAT+GGG - chr6_1:91981963-91981982 Msa0898420:intron 40.0%
ATGAGGGTAAAGCATAGCAT+AGG - chr6_1:91982309-91982328 Msa0898420:five_prime_UTR 40.0%
TATGTGATTCTGACAGGTTC+AGG - chr6_1:91982342-91982361 Msa0898420:five_prime_UTR 40.0%
CCTGAAAATCCAGAGGAAAA+TGG + chr6_1:91982505-91982524 None:intergenic 40.0%
! CCATTTTCCTCTGGATTTTC+AGG - chr6_1:91982502-91982521 Msa0898420:five_prime_UTR 40.0%
ATAGTGAGGAGAAGGAACTA+CGG - chr6_1:91982692-91982711 Msa0898420:five_prime_UTR 40.0%
! CTGCAAGTTGAGTGGTTTAA+GGG - chr6_1:91982906-91982925 Msa0898420:five_prime_UTR 40.0%
! TGCAAGTTGAGTGGTTTAAG+GGG - chr6_1:91982907-91982926 Msa0898420:five_prime_UTR 40.0%
!! AACACAATGATGCTGATTCC+TGG - chr6_1:91983079-91983098 Msa0898420:intron 40.0%
! CTATTTTGTGCGGTTTCCAT+AGG - chr6_1:91983111-91983130 Msa0898420:intron 40.0%
GCACAACCTGTCAAATAACT+GGG + chr6_1:91983207-91983226 None:intergenic 40.0%
TGCACAACCTGTCAAATAAC+TGG + chr6_1:91983208-91983227 None:intergenic 40.0%
ATGCCATTACACAGGTTGTA+GGG + chr6_1:91983519-91983538 None:intergenic 40.0%
AATGCCATTACACAGGTTGT+AGG + chr6_1:91983520-91983539 None:intergenic 40.0%
CATTCGAAATGCCATTACAC+AGG + chr6_1:91983527-91983546 None:intergenic 40.0%
TTTCGAATGTTGCGTCTCAA+TGG - chr6_1:91983538-91983557 Msa0898420:intron 40.0%
AATGGCTATGATGTCTCTTC+AGG - chr6_1:91983556-91983575 Msa0898420:intron 40.0%
CTTCAGTTAGAACTTGAGTC+AGG - chr6_1:91983782-91983801 Msa0898420:intron 40.0%
TCAGTTAGAACTTGAGTCAG+GGG - chr6_1:91983784-91983803 Msa0898420:intron 40.0%
ATACGAAGTACGTTGAGAAG+AGG + chr6_1:91983814-91983833 None:intergenic 40.0%
TGGCCTAACTTGAGATAGAT+TGG + chr6_1:91983847-91983866 None:intergenic 40.0%
!! GGAACTGTCTTTAAAGCTGT+TGG - chr6_1:91983968-91983987 Msa0898420:five_prime_UTR 40.0%
!! GTGGCGATTAGTTTGTACGA+CGG + chr6_1:91980240-91980259 None:intergenic 45.0%
GTTCTTCAGCATGCATGTCT+AGG - chr6_1:91980261-91980280 Msa0898420:three_prime_UTR 45.0%
ATCTTAGGGACCACAAGACA+TGG - chr6_1:91981013-91981032 Msa0898420:intron 45.0%
GGAATTGATGTTGGGACAGA+AGG - chr6_1:91981898-91981917 Msa0898420:intron 45.0%
TCTGACAGGTTCAGGTGTAT+TGG - chr6_1:91982350-91982369 Msa0898420:five_prime_UTR 45.0%
GAGACAACCTGAAAATCCAG+AGG + chr6_1:91982512-91982531 None:intergenic 45.0%
TGAGTCCTCACTTATTTGCG+TGG - chr6_1:91982585-91982604 Msa0898420:five_prime_UTR 45.0%
TTCCTTCTCCTCACTATGAG+AGG + chr6_1:91982689-91982708 None:intergenic 45.0%
! CAGATTAGCTGCAAGTTGAG+TGG - chr6_1:91982898-91982917 Msa0898420:five_prime_UTR 45.0%
! GCTGCAAGTTGAGTGGTTTA+AGG - chr6_1:91982905-91982924 Msa0898420:five_prime_UTR 45.0%
GAGATAGAAGAGGATCCTAC+TGG - chr6_1:91983145-91983164 Msa0898420:intron 45.0%
ATAGAAGAGGATCCTACTGG+TGG - chr6_1:91983148-91983167 Msa0898420:intron 45.0%
! ATCCTACTGGTGGATCAAGT+GGG - chr6_1:91983158-91983177 Msa0898420:intron 45.0%
GGTTGTGCATCAATCTTGAC+AGG - chr6_1:91983219-91983238 Msa0898420:intron 45.0%
AGACCCTACAACCTGTGTAA+TGG - chr6_1:91983513-91983532 Msa0898420:intron 45.0%
CTCAAGTTAGGCCAATCTCA+AGG - chr6_1:91983853-91983872 Msa0898420:intron 45.0%
!! AGCATCGATAGTAGCATGTG+GGG + chr6_1:91984006-91984025 None:intergenic 45.0%
!! GAGCATCGATAGTAGCATGT+GGG + chr6_1:91984007-91984026 None:intergenic 45.0%
!! AGAGCATCGATAGTAGCATG+TGG + chr6_1:91984008-91984027 None:intergenic 45.0%
ACATGCATGCTGAAGAACGG+TGG + chr6_1:91980259-91980278 None:intergenic 50.0%
TGAATCGCGTCCAACTGGTA+TGG - chr6_1:91980534-91980553 Msa0898420:intron 50.0%
GAATCGCGTCCAACTGGTAT+GGG - chr6_1:91980535-91980554 Msa0898420:intron 50.0%
GGCTATCTCCTCTCATAGTG+AGG - chr6_1:91982678-91982697 Msa0898420:five_prime_UTR 50.0%
CTCCTCTCATAGTGAGGAGA+AGG - chr6_1:91982684-91982703 Msa0898420:five_prime_UTR 50.0%
! GATCCTACTGGTGGATCAAG+TGG - chr6_1:91983157-91983176 Msa0898420:intron 50.0%
TGGGAGCAGGTGAAACTGAA+TGG - chr6_1:91983177-91983196 Msa0898420:intron 50.0%
GGAGCTCCCAGTTATTTGAC+AGG - chr6_1:91983198-91983217 Msa0898420:intron 50.0%
! TTGACGGCGGTGGTGTGTTT+TGG + chr6_1:91980206-91980225 None:intergenic 55.0%
CTCTCTGAATCGCGTCCAAC+TGG - chr6_1:91980529-91980548 Msa0898420:intron 55.0%
!! ACTTGGCCTTGCTAAGTGGG+TGG - chr6_1:91981717-91981736 Msa0898420:intron 55.0%
CCACTTCCACCCACTTAGCA+AGG + chr6_1:91981726-91981745 None:intergenic 55.0%
CCTTGCTAAGTGGGTGGAAG+TGG - chr6_1:91981723-91981742 Msa0898420:intron 55.0%
CTCCCACTTGATCCACCAGT+AGG + chr6_1:91983163-91983182 None:intergenic 55.0%
GACGGCGACCACGAGATTGA+CGG + chr6_1:91980222-91980241 None:intergenic 60.0%
! CTGGTGGATCAAGTGGGAGC+AGG - chr6_1:91983164-91983183 Msa0898420:intron 60.0%
CACCACCGCCGTCAATCTCG+TGG - chr6_1:91980211-91980230 Msa0898420:three_prime_UTR 65.0%
GACCACGAGATTGACGGCGG+TGG + chr6_1:91980216-91980235 None:intergenic 65.0%
GGCGACCACGAGATTGACGG+CGG + chr6_1:91980219-91980238 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 91980161 91984345 91980161 ID=Msa0898420;Name=Msa0898420
chr6_1 mRNA 91980161 91984345 91980161 ID=Msa0898420-mRNA-1;Parent=Msa0898420;Name=Msa0898420-mRNA-1;_AED=0.14;_eAED=0.17;_QI=1033|0.66|0.8|1|0.11|0.1|10|529|108
chr6_1 exon 91980161 91980540 91980161 ID=Msa0898420-mRNA-1:exon:15583;Parent=Msa0898420-mRNA-1
chr6_1 exon 91980632 91980732 91980632 ID=Msa0898420-mRNA-1:exon:15582;Parent=Msa0898420-mRNA-1
chr6_1 exon 91981105 91981192 91981105 ID=Msa0898420-mRNA-1:exon:15581;Parent=Msa0898420-mRNA-1
chr6_1 exon 91981321 91981373 91981321 ID=Msa0898420-mRNA-1:exon:15580;Parent=Msa0898420-mRNA-1
chr6_1 exon 91981923 91981929 91981923 ID=Msa0898420-mRNA-1:exon:15579;Parent=Msa0898420-mRNA-1
chr6_1 exon 91982082 91983084 91982082 ID=Msa0898420-mRNA-1:exon:15578;Parent=Msa0898420-mRNA-1
chr6_1 exon 91983670 91983701 91983670 ID=Msa0898420-mRNA-1:exon:15577;Parent=Msa0898420-mRNA-1
chr6_1 exon 91983803 91983867 91983803 ID=Msa0898420-mRNA-1:exon:15576;Parent=Msa0898420-mRNA-1
chr6_1 exon 91983956 91983993 91983956 ID=Msa0898420-mRNA-1:exon:15575;Parent=Msa0898420-mRNA-1
chr6_1 exon 91984224 91984345 91984224 ID=Msa0898420-mRNA-1:exon:15574;Parent=Msa0898420-mRNA-1
chr6_1 five_prime_UTR 91984224 91984345 91984224 ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 five_prime_UTR 91983956 91983993 91983956 ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 five_prime_UTR 91983803 91983867 91983803 ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 five_prime_UTR 91983670 91983701 91983670 ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 five_prime_UTR 91982309 91983084 91982309 ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 CDS 91982082 91982308 91982082 ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1
chr6_1 CDS 91981923 91981929 91981923 ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1
chr6_1 CDS 91981321 91981373 91981321 ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1
chr6_1 CDS 91981153 91981192 91981153 ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1
chr6_1 three_prime_UTR 91981105 91981152 91981105 ID=Msa0898420-mRNA-1:three_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 three_prime_UTR 91980632 91980732 91980632 ID=Msa0898420-mRNA-1:three_prime_utr;Parent=Msa0898420-mRNA-1
chr6_1 three_prime_UTR 91980161 91980540 91980161 ID=Msa0898420-mRNA-1:three_prime_utr;Parent=Msa0898420-mRNA-1
Gene Sequence

>Msa0898420

ATGGGCTCATTGTTTATAAGTTGTGTGCATGAAACTATATGTTATCCTTTTGTCTGTGTTGGCATAAATCATATATTTTTTTCTCAATTTTTAAAATTTATATTGCTTGAAATGAGGGTAAAGCATAGCATAGGAGCTTCATTGTATGTGATTCTGACAGGTTCAGGTGTATTGGAGCTGCTCAGATACGAAAAACATCTATATCAAATTCTAAATCTCACTCTCAGAATTAAGGATGTATCTGATGAGATAGAAGAGGATCCTACTGGTGGATCAAGTGGGAGCAGGTTTGGCATGTGTTACAGTGAAGCTGTTTCTGTTGTCTAA

Protein sequence

>Msa0898420

MGSLFISCVHETICYPFVCVGINHIFFSQFLKFILLEMRVKHSIGASLYVILTGSGVLELLRYEKHLYQILNLTLRIKDVSDEIEEDPTGGSSGSRFGMCYSEAVSVV*