Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0719080 | Msa0898420 | 0.803444 | 3.476660e-49 | -8.615850e-47 |
Msa0719090 | Msa0898420 | 0.807170 | 5.762245e-50 | -8.615850e-47 |
Msa0898420 | Msa0898480 | 0.881817 | 1.750863e-70 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 91 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAAAGCTGTTGGAATTTA+TGG | 0.093237 | 6_1:-91980507 | Msa0898420:three_prime_UTR |
AGGAAAATAAACTTCAAATT+TGG | 0.150009 | 6_1:-91982826 | Msa0898420:five_prime_UTR |
TTACATAGTTTAATATTTAT+TGG | 0.159942 | 6_1:-91982368 | Msa0898420:five_prime_UTR |
AGTCAAATCATCTTTCTTAT+TGG | 0.170911 | 6_1:-91980264 | Msa0898420:three_prime_UTR |
TCTCCACCCAAACACTATTT+TGG | 0.205565 | 6_1:+91982663 | None:intergenic |
ATGAGTATATTGTAGTATTT+TGG | 0.206479 | 6_1:-91982338 | Msa0898420:five_prime_UTR |
ACATATTGTGATTACATCTA+TGG | 0.210486 | 6_1:-91983813 | Msa0898420:five_prime_UTR |
TTAGTCCAACCAAGTATTCT+AGG | 0.256388 | 6_1:-91980229 | Msa0898420:three_prime_UTR |
TTAGTCCAACCAAGTATTCT+AGG | 0.256388 | 6_1:-91980373 | Msa0898420:three_prime_UTR |
CGTATGACTTACTCAATTTC+AGG | 0.262891 | 6_1:-91982702 | Msa0898420:five_prime_UTR |
GATTTCTTATTATAGAATTA+AGG | 0.271180 | 6_1:-91981922 | Msa0898420:intron |
TTCTCATATTCATTTAAGTA+TGG | 0.305550 | 6_1:-91982630 | Msa0898420:five_prime_UTR |
TATGGAGCTCAATTCATAAT+TGG | 0.316553 | 6_1:-91982612 | Msa0898420:five_prime_UTR |
TCAGAAGAAGATACTTAAAA+AGG | 0.321134 | 6_1:-91983669 | Msa0898420:intron |
TTACACTCCAAAATAGTGTT+TGG | 0.336587 | 6_1:-91982670 | Msa0898420:five_prime_UTR |
TTGACGGCGGTGGTGTGTTT+TGG | 0.343920 | 6_1:+91984281 | None:intergenic |
ATTTATATTGCTTGAAATGA+GGG | 0.361859 | 6_1:-91982191 | Msa0898420:CDS |
GGCTTTGATGAATTGATGTT+TGG | 0.367181 | 6_1:-91982309 | Msa0898420:five_prime_UTR |
TGGCCTAACTTGAGATAGAT+TGG | 0.372438 | 6_1:+91980640 | None:intergenic |
TCTCCAATCTATCTCAAGTT+AGG | 0.373052 | 6_1:-91980643 | Msa0898420:three_prime_UTR |
TCTGACAGGTTCAGGTGTAT+TGG | 0.383747 | 6_1:-91982134 | Msa0898420:CDS |
GAAGAGAATAATAATGAATC+AGG | 0.386396 | 6_1:-91982910 | Msa0898420:five_prime_UTR |
CTCTCTGAATCGCGTCCAAC+TGG | 0.394223 | 6_1:-91983955 | Msa0898420:intron |
TACACTCCAAAATAGTGTTT+GGG | 0.413303 | 6_1:-91982669 | Msa0898420:five_prime_UTR |
TATGTGATTCTGACAGGTTC+AGG | 0.414912 | 6_1:-91982142 | Msa0898420:CDS |
GGAACTGTCTTTAAAGCTGT+TGG | 0.420625 | 6_1:-91980516 | Msa0898420:three_prime_UTR |
GTGTATTGGATGAAATATAA+AGG | 0.428721 | 6_1:-91981104 | Msa0898420:intron |
AGAGGAAATTCAAAGTGTAT+TGG | 0.440311 | 6_1:-91981118 | Msa0898420:three_prime_UTR |
CTTCAGTTAGAACTTGAGTC+AGG | 0.445415 | 6_1:-91980702 | Msa0898420:three_prime_UTR |
AATATCAATCCTAGAATACT+TGG | 0.446462 | 6_1:+91980220 | None:intergenic |
AATATCAATCCTAGAATACT+TGG | 0.446462 | 6_1:+91980364 | None:intergenic |
TTGATGAATTGATGTTTGGA+TGG | 0.446739 | 6_1:-91982305 | Msa0898420:exon |
AATTTATATTGCTTGAAATG+AGG | 0.455939 | 6_1:-91982192 | Msa0898420:CDS |
GGAATTGATGTTGGGACAGA+AGG | 0.457367 | 6_1:-91982586 | Msa0898420:five_prime_UTR |
GCATTTGAACAATCACATCT+TGG | 0.460376 | 6_1:-91983037 | Msa0898420:five_prime_UTR |
GAGCTCAATTCATAATTGGC+TGG | 0.465906 | 6_1:-91982608 | Msa0898420:five_prime_UTR |
GATCATATTGAGGAACATAA+AGG | 0.468197 | 6_1:-91982846 | Msa0898420:five_prime_UTR |
AATAACTTGGCCTTGCTAAG+TGG | 0.469693 | 6_1:-91982771 | Msa0898420:five_prime_UTR |
TCATTGTATGTGATTCTGAC+AGG | 0.481539 | 6_1:-91982148 | Msa0898420:CDS |
AGAAATTTGTAATTCATGAA+TGG | 0.483187 | 6_1:-91982995 | Msa0898420:five_prime_UTR |
CCTTGCTAAGTGGGTGGAAG+TGG | 0.490298 | 6_1:-91982761 | Msa0898420:five_prime_UTR |
AAATTCTAAATCTCACTCTC+AGG | 0.492072 | 6_1:-91982081 | Msa0898420:intron |
TCTTGGACAAGGAAAACTCT+TGG | 0.495492 | 6_1:-91983020 | Msa0898420:five_prime_UTR |
AATAAGAAAGATGATTTGAC+TGG | 0.502511 | 6_1:+91980266 | None:intergenic |
GTTCTTCAGCATGCATGTCT+AGG | 0.512038 | 6_1:-91984223 | Msa0898420:intron |
ATAACTTGGCCTTGCTAAGT+GGG | 0.519019 | 6_1:-91982770 | Msa0898420:five_prime_UTR |
TGATGAATTGATGTTTGGAT+GGG | 0.521743 | 6_1:-91982304 | Msa0898420:exon |
CTTGGACAAGGAAAACTCTT+GGG | 0.522312 | 6_1:-91983019 | Msa0898420:five_prime_UTR |
AATTGGCTGGGAATTGATGT+TGG | 0.524589 | 6_1:-91982595 | Msa0898420:five_prime_UTR |
ATGAATGTGTACCTTGAGAT+TGG | 0.527641 | 6_1:+91980620 | None:intergenic |
CTGGTGGATCAAGTGGGAGC+AGG | 0.534464 | 6_1:-91981320 | Msa0898420:intron |
AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 6_1:+91983838 | None:intergenic |
ATTGGCTGGGAATTGATGTT+GGG | 0.537914 | 6_1:-91982594 | Msa0898420:five_prime_UTR |
AGACACTGATTCAAACTCCT+TGG | 0.537921 | 6_1:-91982727 | Msa0898420:five_prime_UTR |
TTTATGCCAACACAGACAAA+AGG | 0.538930 | 6_1:+91982241 | None:intergenic |
ATGAATGAAGGATCATATTG+AGG | 0.540239 | 6_1:-91982856 | Msa0898420:five_prime_UTR |
AGCTCAATTCATAATTGGCT+GGG | 0.543113 | 6_1:-91982607 | Msa0898420:five_prime_UTR |
GATCCTACTGGTGGATCAAG+TGG | 0.545710 | 6_1:-91981327 | Msa0898420:CDS |
GAGAAAATAAAGAAATAACT+TGG | 0.551583 | 6_1:-91982784 | Msa0898420:five_prime_UTR |
GAATTGATGTTGGGACAGAA+GGG | 0.557524 | 6_1:-91982585 | Msa0898420:five_prime_UTR |
GAGATAGAAGAGGATCCTAC+TGG | 0.558794 | 6_1:-91981339 | Msa0898420:CDS |
TTCAGTTAGAACTTGAGTCA+GGG | 0.560741 | 6_1:-91980701 | Msa0898420:three_prime_UTR |
GTCTAATCATCATTTCAAAG+AGG | 0.562174 | 6_1:-91981136 | Msa0898420:exon |
GACGGCGACCACGAGATTGA+CGG | 0.583527 | 6_1:+91984265 | None:intergenic |
TCAATCCTAGAATACTTGGT+TGG | 0.584321 | 6_1:+91980224 | None:intergenic |
TCAATCCTAGAATACTTGGT+TGG | 0.584321 | 6_1:+91980368 | None:intergenic |
AATTTGTAATTCATGAATGG+AGG | 0.596085 | 6_1:-91982992 | Msa0898420:five_prime_UTR |
ACTCCAAAATAGTGTTTGGG+TGG | 0.597737 | 6_1:-91982666 | Msa0898420:five_prime_UTR |
AATTGATGTTGGGACAGAAG+GGG | 0.599240 | 6_1:-91982584 | Msa0898420:five_prime_UTR |
GAGCATCGATAGTAGCATGT+GGG | 0.602347 | 6_1:+91980480 | None:intergenic |
CCACTTCCACCCACTTAGCA+AGG | 0.612812 | 6_1:+91982761 | None:intergenic |
ATAGAAGAGGATCCTACTGG+TGG | 0.614179 | 6_1:-91981336 | Msa0898420:CDS |
ATCCTACTGGTGGATCAAGT+GGG | 0.614534 | 6_1:-91981326 | Msa0898420:CDS |
ATACGAAGTACGTTGAGAAG+AGG | 0.621494 | 6_1:+91980673 | None:intergenic |
ATGAGGGTAAAGCATAGCAT+AGG | 0.621957 | 6_1:-91982175 | Msa0898420:CDS |
CACCACCGCCGTCAATCTCG+TGG | 0.622956 | 6_1:-91984273 | Msa0898420:five_prime_UTR |
GACCACGAGATTGACGGCGG+TGG | 0.624242 | 6_1:+91984271 | None:intergenic |
CTCAAGTTAGGCCAATCTCA+AGG | 0.626948 | 6_1:-91980631 | Msa0898420:intron |
GAACAATCACATCTTGGACA+AGG | 0.630238 | 6_1:-91983031 | Msa0898420:five_prime_UTR |
TAGACATGCATGCTGAAGAA+CGG | 0.634330 | 6_1:+91984225 | None:intergenic |
ACTTGGCCTTGCTAAGTGGG+TGG | 0.635988 | 6_1:-91982767 | Msa0898420:five_prime_UTR |
TCAGTTAGAACTTGAGTCAG+GGG | 0.637166 | 6_1:-91980700 | Msa0898420:three_prime_UTR |
TGTATCTGATGAGATAGAAG+AGG | 0.638499 | 6_1:-91981349 | Msa0898420:CDS |
AGCATCGATAGTAGCATGTG+GGG | 0.640067 | 6_1:+91980481 | None:intergenic |
TGAGTAAGTCATACGTACCA+AGG | 0.642580 | 6_1:+91982710 | None:intergenic |
AGAGCATCGATAGTAGCATG+TGG | 0.649753 | 6_1:+91980479 | None:intergenic |
CTCCCACTTGATCCACCAGT+AGG | 0.659602 | 6_1:+91981324 | None:intergenic |
ACATGCATGCTGAAGAACGG+TGG | 0.703164 | 6_1:+91984228 | None:intergenic |
GTGGCGATTAGTTTGTACGA+CGG | 0.729072 | 6_1:+91984247 | None:intergenic |
GGCGACCACGAGATTGACGG+CGG | 0.731323 | 6_1:+91984268 | None:intergenic |
TTACATCTATGGAATAGACA+AGG | 0.740340 | 6_1:-91983802 | Msa0898420:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAATTTAATCAAAATTTTAT+AGG | + | chr6_1:91981192-91981211 | None:intergenic | 10.0% |
!! | ATTAAAAAAATAATGAATGA+AGG | - | chr6_1:91981616-91981635 | Msa0898420:intron | 10.0% |
!!! | TTTCTTATATTTTGATAATT+TGG | - | chr6_1:91982089-91982108 | Msa0898420:CDS | 10.0% |
!! | TTACATAGTTTAATATTTAT+TGG | - | chr6_1:91982116-91982135 | Msa0898420:CDS | 10.0% |
!!! | TATTTTCTAAAATGTAATTT+TGG | - | chr6_1:91982635-91982654 | Msa0898420:five_prime_UTR | 10.0% |
!!! | TGTATTATATTTTATCTTAT+AGG | + | chr6_1:91982761-91982780 | None:intergenic | 10.0% |
!! | TGTGAAAAAAAAAAAAATAT+TGG | - | chr6_1:91983464-91983483 | Msa0898420:intron | 10.0% |
!! | CAAAATAATAATCAATAAAG+TGG | + | chr6_1:91980602-91980621 | None:intergenic | 15.0% |
!! | AAGTATAATATGATAGAAAT+AGG | + | chr6_1:91981318-91981337 | None:intergenic | 15.0% |
!! | TACAAAAATTAAATAAACAG+AGG | + | chr6_1:91981396-91981415 | None:intergenic | 15.0% |
!! | AGATTATTAAAAGAAAAACA+AGG | - | chr6_1:91981952-91981971 | Msa0898420:intron | 15.0% |
!! | GATTTCTTATTATAGAATTA+AGG | - | chr6_1:91982562-91982581 | Msa0898420:five_prime_UTR | 15.0% |
!! | TTTCTTTATAAATTGATGAA+AGG | - | chr6_1:91983257-91983276 | Msa0898420:intron | 15.0% |
!! | AAACAAACAACACAAAAAAA+AGG | + | chr6_1:91980301-91980320 | None:intergenic | 20.0% |
!!! | TTTTTATTGATCTCATTTGA+TGG | - | chr6_1:91980395-91980414 | Msa0898420:three_prime_UTR | 20.0% |
!!! | GTTTTTTTGTTGTAAATATG+AGG | - | chr6_1:91980570-91980589 | Msa0898420:intron | 20.0% |
!!! | TTTTGATTTAATTGTGTTTG+AGG | - | chr6_1:91980617-91980636 | Msa0898420:intron | 20.0% |
!!! | TCTATCATGTTATATTCTTT+TGG | - | chr6_1:91981369-91981388 | Msa0898420:intron | 20.0% |
!!! | TTATTTAATTTTTGTAGTGC+AGG | - | chr6_1:91981400-91981419 | Msa0898420:intron | 20.0% |
!! | AGAAATTTGTAATTCATGAA+TGG | - | chr6_1:91981489-91981508 | Msa0898420:intron | 20.0% |
!! | AGGAAAATAAACTTCAAATT+TGG | - | chr6_1:91981658-91981677 | Msa0898420:intron | 20.0% |
!! | GAGAAAATAAAGAAATAACT+TGG | - | chr6_1:91981700-91981719 | Msa0898420:intron | 20.0% |
!! | TTCTCATATTCATTTAAGTA+TGG | - | chr6_1:91981854-91981873 | Msa0898420:intron | 20.0% |
!! | TTATTAAAAGAAAAACAAGG+AGG | - | chr6_1:91981955-91981974 | Msa0898420:intron | 20.0% |
!!! | ATGAGTATATTGTAGTATTT+TGG | - | chr6_1:91982146-91982165 | Msa0898420:CDS | 20.0% |
!! | AATTTATATTGCTTGAAATG+AGG | - | chr6_1:91982292-91982311 | Msa0898420:exon | 20.0% |
!! | ATTTATATTGCTTGAAATGA+GGG | - | chr6_1:91982293-91982312 | Msa0898420:exon | 20.0% |
!!! | AAACTTTTCATTTTCATGTA+TGG | - | chr6_1:91983422-91983441 | Msa0898420:intron | 20.0% |
!!! | AAAAAAAAATATTGGCTACA+AGG | - | chr6_1:91983472-91983491 | Msa0898420:intron | 20.0% |
!!! | TAATTAGTGTGTATCATTTT+TGG | - | chr6_1:91983607-91983626 | Msa0898420:intron | 20.0% |
!! | GACAATAATGAAATCATATT+TGG | + | chr6_1:91983687-91983706 | None:intergenic | 20.0% |
!! | GCATTTCTTTAATAATTGTT+GGG | - | chr6_1:91983728-91983747 | Msa0898420:intron | 20.0% |
!!! | TATATCATTTTTGAATCCAA+AGG | - | chr6_1:91983886-91983905 | Msa0898420:intron | 20.0% |
!! | ATAAAAAAGATGATTTGACT+GGG | + | chr6_1:91984074-91984093 | None:intergenic | 20.0% |
!! | AATAAAAAAGATGATTTGAC+TGG | + | chr6_1:91984075-91984094 | None:intergenic | 20.0% |
!!! | AGTCAAATCATCTTTTTTAT+TGG | - | chr6_1:91984074-91984093 | Msa0898420:intron | 20.0% |
!!! | TTTTCTCTCCTTTTTTGATT+TGG | - | chr6_1:91980330-91980349 | Msa0898420:three_prime_UTR | 25.0% |
! | TAAAACAGCCAAATCAAAAA+AGG | + | chr6_1:91980341-91980360 | None:intergenic | 25.0% |
!! | ATGTGTTTAAAATGCAGATT+GGG | - | chr6_1:91980496-91980515 | Msa0898420:three_prime_UTR | 25.0% |
! | ACATATTGTGATTACATCTA+TGG | - | chr6_1:91980671-91980690 | Msa0898420:three_prime_UTR | 25.0% |
! | TCAGAAGAAGATACTTAAAA+AGG | - | chr6_1:91980815-91980834 | Msa0898420:intron | 25.0% |
! | TAGATAATTAAAGCCACAAT+AGG | + | chr6_1:91980879-91980898 | None:intergenic | 25.0% |
!!! | TTGTTTTGAGTAATTGGAAA+AGG | - | chr6_1:91980977-91980996 | Msa0898420:intron | 25.0% |
!! | CTGAAGGATTTTATATATAC+AGG | + | chr6_1:91981114-91981133 | None:intergenic | 25.0% |
!! | CAAGTATGAAACTATAGTTT+TGG | - | chr6_1:91981214-91981233 | Msa0898420:intron | 25.0% |
! | TCATATTATACTTATGACAG+TGG | - | chr6_1:91981325-91981344 | Msa0898420:CDS | 25.0% |
! | AATTTGTAATTCATGAATGG+AGG | - | chr6_1:91981492-91981511 | Msa0898420:intron | 25.0% |
! | GAAGAGAATAATAATGAATC+AGG | - | chr6_1:91981574-91981593 | Msa0898420:intron | 25.0% |
!!! | ATTGTAGTATTTTGGTTCAT+TGG | - | chr6_1:91982154-91982173 | Msa0898420:CDS | 25.0% |
! | TTGAAAAATCATGTGAACTT+TGG | - | chr6_1:91982790-91982809 | Msa0898420:five_prime_UTR | 25.0% |
! | TGAAAAATCATGTGAACTTT+GGG | - | chr6_1:91982791-91982810 | Msa0898420:five_prime_UTR | 25.0% |
!! | AACATTTTTCTTGTGCAATA+TGG | - | chr6_1:91982858-91982877 | Msa0898420:five_prime_UTR | 25.0% |
! | ACAAAATAGATATTGTATCC+AGG | + | chr6_1:91983100-91983119 | None:intergenic | 25.0% |
!! | GATACAATATCTATTTTGTG+CGG | - | chr6_1:91983101-91983120 | Msa0898420:intron | 25.0% |
! | GTGTATTGGATGAAATATAA+AGG | - | chr6_1:91983380-91983399 | Msa0898420:intron | 25.0% |
! | GATACACACTAATTATAACA+TGG | + | chr6_1:91983602-91983621 | None:intergenic | 25.0% |
! | AAATGCGATAAACAAATCAA+CGG | + | chr6_1:91983714-91983733 | None:intergenic | 25.0% |
! | CGCATTTCTTTAATAATTGT+TGG | - | chr6_1:91983727-91983746 | Msa0898420:intron | 25.0% |
! | TTTAATAATTGTTGGGATCT+TGG | - | chr6_1:91983735-91983754 | Msa0898420:intron | 25.0% |
!! | TTCAAGTATCACTTCTAAAA+TGG | - | chr6_1:91983911-91983930 | Msa0898420:intron | 25.0% |
!! | TTCTAACAAAACATGTTTTC+AGG | - | chr6_1:91983944-91983963 | Msa0898420:intron | 25.0% |
!! | TTTAAAGCTGTTGGAATTTA+TGG | - | chr6_1:91983977-91983996 | Msa0898420:intron | 25.0% |
! | TAAAAAAGATGATTTGACTG+GGG | + | chr6_1:91984073-91984092 | None:intergenic | 25.0% |
! | AATATCAATCCTAGAATACT+TGG | + | chr6_1:91984123-91984142 | None:intergenic | 25.0% |
! | AATAAGAAAGATGATTTGAC+TGG | + | chr6_1:91984221-91984240 | None:intergenic | 25.0% |
! | AGTCAAATCATCTTTCTTAT+TGG | - | chr6_1:91984220-91984239 | Msa0898420:intron | 25.0% |
! | AATATCAATCCTAGAATACT+TGG | + | chr6_1:91984123-91984142 | None:intergenic | 25.0% |
ATATGCATTCAATCATGACT+TGG | + | chr6_1:91980424-91980443 | None:intergenic | 30.0% | |
! | CATGTGTTTAAAATGCAGAT+TGG | - | chr6_1:91980495-91980514 | Msa0898420:three_prime_UTR | 30.0% |
TTACATCTATGGAATAGACA+AGG | - | chr6_1:91980682-91980701 | Msa0898420:three_prime_UTR | 30.0% | |
!!! | GAGCTTTTGTTTTGAGTAAT+TGG | - | chr6_1:91980971-91980990 | Msa0898420:intron | 30.0% |
ATTATTCTGTGAACTTCTGA+AGG | + | chr6_1:91981130-91981149 | None:intergenic | 30.0% | |
! | ATTTTCAAACTCTTCTCACA+TGG | + | chr6_1:91981165-91981184 | None:intergenic | 30.0% |
! | ACAAAGAAAGTGTACATCAA+GGG | + | chr6_1:91981262-91981281 | None:intergenic | 30.0% |
! | TACAAAGAAAGTGTACATCA+AGG | + | chr6_1:91981263-91981282 | None:intergenic | 30.0% |
TATACTTATGACAGTGGAAT+TGG | - | chr6_1:91981331-91981350 | Msa0898420:CDS | 30.0% | |
ATACTTATGACAGTGGAATT+GGG | - | chr6_1:91981332-91981351 | Msa0898420:CDS | 30.0% | |
ATGAATGAAGGATCATATTG+AGG | - | chr6_1:91981628-91981647 | Msa0898420:intron | 30.0% | |
GATCATATTGAGGAACATAA+AGG | - | chr6_1:91981638-91981657 | Msa0898420:intron | 30.0% | |
!!! | AACACTATTTTGGAGTGTAA+AGG | + | chr6_1:91981814-91981833 | None:intergenic | 30.0% |
TTACACTCCAAAATAGTGTT+TGG | - | chr6_1:91981814-91981833 | Msa0898420:intron | 30.0% | |
TACACTCCAAAATAGTGTTT+GGG | - | chr6_1:91981815-91981834 | Msa0898420:intron | 30.0% | |
TATGGAGCTCAATTCATAAT+TGG | - | chr6_1:91981872-91981891 | Msa0898420:intron | 30.0% | |
TTGATGAATTGATGTTTGGA+TGG | - | chr6_1:91982179-91982198 | Msa0898420:CDS | 30.0% | |
TGATGAATTGATGTTTGGAT+GGG | - | chr6_1:91982180-91982199 | Msa0898420:CDS | 30.0% | |
AAATTCTAAATCTCACTCTC+AGG | - | chr6_1:91982403-91982422 | Msa0898420:five_prime_UTR | 30.0% | |
TAGAATATAGCACACATAAG+AGG | + | chr6_1:91982724-91982743 | None:intergenic | 30.0% | |
CACAAGAAAAATGTTCACAA+AGG | + | chr6_1:91982853-91982872 | None:intergenic | 30.0% | |
CGAATATCTCTTCTCTTATA+AGG | - | chr6_1:91982976-91982995 | Msa0898420:five_prime_UTR | 30.0% | |
GGTTCAATGTTAGTTGTAAA+GGG | + | chr6_1:91983023-91983042 | None:intergenic | 30.0% | |
AGGTTCAATGTTAGTTGTAA+AGG | + | chr6_1:91983024-91983043 | None:intergenic | 30.0% | |
! | GAACCTGTTTTACAATTTTC+AGG | - | chr6_1:91983038-91983057 | Msa0898420:five_prime_UTR | 30.0% |
CTACCTGAAAATTGTAAAAC+AGG | + | chr6_1:91983044-91983063 | None:intergenic | 30.0% | |
!! | ATCAATTGATTTGACAGGTT+TGG | - | chr6_1:91983297-91983316 | Msa0898420:intron | 30.0% |
GTCTAATCATCATTTCAAAG+AGG | - | chr6_1:91983348-91983367 | Msa0898420:intron | 30.0% | |
AGAGGAAATTCAAAGTGTAT+TGG | - | chr6_1:91983366-91983385 | Msa0898420:intron | 30.0% | |
AATAAACTTCACAGTAGACT+TGG | - | chr6_1:91983648-91983667 | Msa0898420:intron | 30.0% | |
AAGTGATACTTGAATTCCTT+TGG | + | chr6_1:91983905-91983924 | None:intergenic | 30.0% | |
!! | TAACAAAACATGTTTTCAGG+AGG | - | chr6_1:91983947-91983966 | Msa0898420:intron | 30.0% |
TGCTTGCAGAAAAAAAAAAC+AGG | - | chr6_1:91984027-91984046 | Msa0898420:intron | 30.0% | |
TTTGATCGATTGAGAGGATT+GGG | - | chr6_1:91980372-91980391 | Msa0898420:three_prime_UTR | 35.0% | |
! | TCCAGAATTTTTGTGTGTGA+TGG | - | chr6_1:91980469-91980488 | Msa0898420:three_prime_UTR | 35.0% |
ACCATCACACACAAAAATTC+TGG | + | chr6_1:91980473-91980492 | None:intergenic | 35.0% | |
CAATAAAAACCCATACCAGT+TGG | + | chr6_1:91980547-91980566 | None:intergenic | 35.0% | |
AAACTGATGCAAAATTGCTC+TGG | + | chr6_1:91980649-91980668 | None:intergenic | 35.0% | |
ACAAGGTTAGATCATGATTC+TGG | - | chr6_1:91980699-91980718 | Msa0898420:three_prime_UTR | 35.0% | |
!! | CATGTGAAACTGATTTGCAA+TGG | - | chr6_1:91980763-91980782 | Msa0898420:intron | 35.0% |
!! | TGGTTTTGCTTTATGTCACA+AGG | - | chr6_1:91980783-91980802 | Msa0898420:intron | 35.0% |
! | GTACTGTGATTTTCCTATTG+TGG | - | chr6_1:91980863-91980882 | Msa0898420:intron | 35.0% |
AGATTCCAGAACTATGATAC+AGG | + | chr6_1:91980935-91980954 | None:intergenic | 35.0% | |
AGTAATTGGAAAAGGACTCA+AGG | - | chr6_1:91980985-91981004 | Msa0898420:intron | 35.0% | |
GTAATTGGAAAAGGACTCAA+GGG | - | chr6_1:91980986-91981005 | Msa0898420:intron | 35.0% | |
GACTCAAGGGTTATATCTTA+GGG | - | chr6_1:91980999-91981018 | Msa0898420:intron | 35.0% | |
AGATTAGATTCCATGTCTTG+TGG | + | chr6_1:91981026-91981045 | None:intergenic | 35.0% | |
AAACTCTTCTCACATGGTTT+AGG | + | chr6_1:91981159-91981178 | None:intergenic | 35.0% | |
!! | CTGCTTTTGCTTGAATTGTT+TGG | - | chr6_1:91981290-91981309 | Msa0898420:intron | 35.0% |
GCATTTGAACAATCACATCT+TGG | - | chr6_1:91981447-91981466 | Msa0898420:intron | 35.0% | |
CGTATGACTTACTCAATTTC+AGG | - | chr6_1:91981782-91981801 | Msa0898420:intron | 35.0% | |
AGCTCAATTCATAATTGGCT+GGG | - | chr6_1:91981877-91981896 | Msa0898420:intron | 35.0% | |
! | GGCTTTGATGAATTGATGTT+TGG | - | chr6_1:91982175-91982194 | Msa0898420:CDS | 35.0% |
! | TGTTATCCTTTTGTCTGTGT+TGG | - | chr6_1:91982237-91982256 | Msa0898420:CDS | 35.0% |
TTTATGCCAACACAGACAAA+AGG | + | chr6_1:91982246-91982265 | None:intergenic | 35.0% | |
TCATTGTATGTGATTCTGAC+AGG | - | chr6_1:91982336-91982355 | Msa0898420:five_prime_UTR | 35.0% | |
! | AATTTTCTCCCATTTTCCTC+TGG | - | chr6_1:91982493-91982512 | Msa0898420:five_prime_UTR | 35.0% |
CTGAAAATCCAGAGGAAAAT+GGG | + | chr6_1:91982504-91982523 | None:intergenic | 35.0% | |
TAAATCCACGCAAATAAGTG+AGG | + | chr6_1:91982593-91982612 | None:intergenic | 35.0% | |
! | GTTGCTTTGTATGTTTCATG+TGG | - | chr6_1:91982657-91982676 | Msa0898420:five_prime_UTR | 35.0% |
! | TCATGTGAACTTTGGGTTTA+AGG | - | chr6_1:91982798-91982817 | Msa0898420:five_prime_UTR | 35.0% |
ATCTCATCAGATACATCCTA+TGG | + | chr6_1:91983130-91983149 | None:intergenic | 35.0% | |
TGTATCTGATGAGATAGAAG+AGG | - | chr6_1:91983135-91983154 | Msa0898420:intron | 35.0% | |
!! | TGTGCATCAATTGATTTGAC+AGG | - | chr6_1:91983292-91983311 | Msa0898420:intron | 35.0% |
TTCAGTTAGAACTTGAGTCA+GGG | - | chr6_1:91983783-91983802 | Msa0898420:intron | 35.0% | |
TCTCCAATCTATCTCAAGTT+AGG | - | chr6_1:91983841-91983860 | Msa0898420:five_prime_UTR | 35.0% | |
ATGAATGTGTACCTTGAGAT+TGG | + | chr6_1:91983867-91983886 | None:intergenic | 35.0% | |
TTAGTCCAACCAAGTATTCT+AGG | - | chr6_1:91984111-91984130 | Msa0898420:intron | 35.0% | |
TCAATCCTAGAATACTTGGT+TGG | + | chr6_1:91984119-91984138 | None:intergenic | 35.0% | |
TTAGTCCAACCAAGTATTCT+AGG | - | chr6_1:91984111-91984130 | Msa0898420:intron | 35.0% | |
TCAATCCTAGAATACTTGGT+TGG | + | chr6_1:91984119-91984138 | None:intergenic | 35.0% | |
TAGACATGCATGCTGAAGAA+CGG | + | chr6_1:91980262-91980281 | None:intergenic | 40.0% | |
TTCCTCTTTGATCGATTGAG+AGG | - | chr6_1:91980366-91980385 | Msa0898420:three_prime_UTR | 40.0% | |
ATCCTCTCAATCGATCAAAG+AGG | + | chr6_1:91980371-91980390 | None:intergenic | 40.0% | |
CTTTGATCGATTGAGAGGAT+TGG | - | chr6_1:91980371-91980390 | Msa0898420:three_prime_UTR | 40.0% | |
TAGCACCTGTATCATAGTTC+TGG | - | chr6_1:91980927-91980946 | Msa0898420:intron | 40.0% | |
GGACTCAAGGGTTATATCTT+AGG | - | chr6_1:91980998-91981017 | Msa0898420:intron | 40.0% | |
AACTCGTTAGTTGCACGTAT+TGG | - | chr6_1:91981053-91981072 | Msa0898420:intron | 40.0% | |
ACTCGTTAGTTGCACGTATT+GGG | - | chr6_1:91981054-91981073 | Msa0898420:intron | 40.0% | |
TGTACATCAAGGGCAACAAA+AGG | + | chr6_1:91981252-91981271 | None:intergenic | 40.0% | |
GAACAATCACATCTTGGACA+AGG | - | chr6_1:91981453-91981472 | Msa0898420:intron | 40.0% | |
TCTTGGACAAGGAAAACTCT+TGG | - | chr6_1:91981464-91981483 | Msa0898420:intron | 40.0% | |
CTTGGACAAGGAAAACTCTT+GGG | - | chr6_1:91981465-91981484 | Msa0898420:intron | 40.0% | |
!! | AATAACTTGGCCTTGCTAAG+TGG | - | chr6_1:91981713-91981732 | Msa0898420:intron | 40.0% |
!! | ATAACTTGGCCTTGCTAAGT+GGG | - | chr6_1:91981714-91981733 | Msa0898420:intron | 40.0% |
!! | AGACACTGATTCAAACTCCT+TGG | - | chr6_1:91981757-91981776 | Msa0898420:intron | 40.0% |
TGAGTAAGTCATACGTACCA+AGG | + | chr6_1:91981777-91981796 | None:intergenic | 40.0% | |
ACTCCAAAATAGTGTTTGGG+TGG | - | chr6_1:91981818-91981837 | Msa0898420:intron | 40.0% | |
! | TCTCCACCCAAACACTATTT+TGG | + | chr6_1:91981824-91981843 | None:intergenic | 40.0% |
GAGCTCAATTCATAATTGGC+TGG | - | chr6_1:91981876-91981895 | Msa0898420:intron | 40.0% | |
AATTGGCTGGGAATTGATGT+TGG | - | chr6_1:91981889-91981908 | Msa0898420:intron | 40.0% | |
ATTGGCTGGGAATTGATGTT+GGG | - | chr6_1:91981890-91981909 | Msa0898420:intron | 40.0% | |
GAATTGATGTTGGGACAGAA+GGG | - | chr6_1:91981899-91981918 | Msa0898420:intron | 40.0% | |
AATTGATGTTGGGACAGAAG+GGG | - | chr6_1:91981900-91981919 | Msa0898420:intron | 40.0% | |
! | AAGAAAAACAAGGAGGTGCA+TGG | - | chr6_1:91981962-91981981 | Msa0898420:intron | 40.0% |
! | AGAAAAACAAGGAGGTGCAT+GGG | - | chr6_1:91981963-91981982 | Msa0898420:intron | 40.0% |
ATGAGGGTAAAGCATAGCAT+AGG | - | chr6_1:91982309-91982328 | Msa0898420:five_prime_UTR | 40.0% | |
TATGTGATTCTGACAGGTTC+AGG | - | chr6_1:91982342-91982361 | Msa0898420:five_prime_UTR | 40.0% | |
CCTGAAAATCCAGAGGAAAA+TGG | + | chr6_1:91982505-91982524 | None:intergenic | 40.0% | |
! | CCATTTTCCTCTGGATTTTC+AGG | - | chr6_1:91982502-91982521 | Msa0898420:five_prime_UTR | 40.0% |
ATAGTGAGGAGAAGGAACTA+CGG | - | chr6_1:91982692-91982711 | Msa0898420:five_prime_UTR | 40.0% | |
! | CTGCAAGTTGAGTGGTTTAA+GGG | - | chr6_1:91982906-91982925 | Msa0898420:five_prime_UTR | 40.0% |
! | TGCAAGTTGAGTGGTTTAAG+GGG | - | chr6_1:91982907-91982926 | Msa0898420:five_prime_UTR | 40.0% |
!! | AACACAATGATGCTGATTCC+TGG | - | chr6_1:91983079-91983098 | Msa0898420:intron | 40.0% |
! | CTATTTTGTGCGGTTTCCAT+AGG | - | chr6_1:91983111-91983130 | Msa0898420:intron | 40.0% |
GCACAACCTGTCAAATAACT+GGG | + | chr6_1:91983207-91983226 | None:intergenic | 40.0% | |
TGCACAACCTGTCAAATAAC+TGG | + | chr6_1:91983208-91983227 | None:intergenic | 40.0% | |
ATGCCATTACACAGGTTGTA+GGG | + | chr6_1:91983519-91983538 | None:intergenic | 40.0% | |
AATGCCATTACACAGGTTGT+AGG | + | chr6_1:91983520-91983539 | None:intergenic | 40.0% | |
CATTCGAAATGCCATTACAC+AGG | + | chr6_1:91983527-91983546 | None:intergenic | 40.0% | |
TTTCGAATGTTGCGTCTCAA+TGG | - | chr6_1:91983538-91983557 | Msa0898420:intron | 40.0% | |
AATGGCTATGATGTCTCTTC+AGG | - | chr6_1:91983556-91983575 | Msa0898420:intron | 40.0% | |
CTTCAGTTAGAACTTGAGTC+AGG | - | chr6_1:91983782-91983801 | Msa0898420:intron | 40.0% | |
TCAGTTAGAACTTGAGTCAG+GGG | - | chr6_1:91983784-91983803 | Msa0898420:intron | 40.0% | |
ATACGAAGTACGTTGAGAAG+AGG | + | chr6_1:91983814-91983833 | None:intergenic | 40.0% | |
TGGCCTAACTTGAGATAGAT+TGG | + | chr6_1:91983847-91983866 | None:intergenic | 40.0% | |
!! | GGAACTGTCTTTAAAGCTGT+TGG | - | chr6_1:91983968-91983987 | Msa0898420:five_prime_UTR | 40.0% |
!! | GTGGCGATTAGTTTGTACGA+CGG | + | chr6_1:91980240-91980259 | None:intergenic | 45.0% |
GTTCTTCAGCATGCATGTCT+AGG | - | chr6_1:91980261-91980280 | Msa0898420:three_prime_UTR | 45.0% | |
ATCTTAGGGACCACAAGACA+TGG | - | chr6_1:91981013-91981032 | Msa0898420:intron | 45.0% | |
GGAATTGATGTTGGGACAGA+AGG | - | chr6_1:91981898-91981917 | Msa0898420:intron | 45.0% | |
TCTGACAGGTTCAGGTGTAT+TGG | - | chr6_1:91982350-91982369 | Msa0898420:five_prime_UTR | 45.0% | |
GAGACAACCTGAAAATCCAG+AGG | + | chr6_1:91982512-91982531 | None:intergenic | 45.0% | |
TGAGTCCTCACTTATTTGCG+TGG | - | chr6_1:91982585-91982604 | Msa0898420:five_prime_UTR | 45.0% | |
TTCCTTCTCCTCACTATGAG+AGG | + | chr6_1:91982689-91982708 | None:intergenic | 45.0% | |
! | CAGATTAGCTGCAAGTTGAG+TGG | - | chr6_1:91982898-91982917 | Msa0898420:five_prime_UTR | 45.0% |
! | GCTGCAAGTTGAGTGGTTTA+AGG | - | chr6_1:91982905-91982924 | Msa0898420:five_prime_UTR | 45.0% |
GAGATAGAAGAGGATCCTAC+TGG | - | chr6_1:91983145-91983164 | Msa0898420:intron | 45.0% | |
ATAGAAGAGGATCCTACTGG+TGG | - | chr6_1:91983148-91983167 | Msa0898420:intron | 45.0% | |
! | ATCCTACTGGTGGATCAAGT+GGG | - | chr6_1:91983158-91983177 | Msa0898420:intron | 45.0% |
GGTTGTGCATCAATCTTGAC+AGG | - | chr6_1:91983219-91983238 | Msa0898420:intron | 45.0% | |
AGACCCTACAACCTGTGTAA+TGG | - | chr6_1:91983513-91983532 | Msa0898420:intron | 45.0% | |
CTCAAGTTAGGCCAATCTCA+AGG | - | chr6_1:91983853-91983872 | Msa0898420:intron | 45.0% | |
!! | AGCATCGATAGTAGCATGTG+GGG | + | chr6_1:91984006-91984025 | None:intergenic | 45.0% |
!! | GAGCATCGATAGTAGCATGT+GGG | + | chr6_1:91984007-91984026 | None:intergenic | 45.0% |
!! | AGAGCATCGATAGTAGCATG+TGG | + | chr6_1:91984008-91984027 | None:intergenic | 45.0% |
ACATGCATGCTGAAGAACGG+TGG | + | chr6_1:91980259-91980278 | None:intergenic | 50.0% | |
TGAATCGCGTCCAACTGGTA+TGG | - | chr6_1:91980534-91980553 | Msa0898420:intron | 50.0% | |
GAATCGCGTCCAACTGGTAT+GGG | - | chr6_1:91980535-91980554 | Msa0898420:intron | 50.0% | |
GGCTATCTCCTCTCATAGTG+AGG | - | chr6_1:91982678-91982697 | Msa0898420:five_prime_UTR | 50.0% | |
CTCCTCTCATAGTGAGGAGA+AGG | - | chr6_1:91982684-91982703 | Msa0898420:five_prime_UTR | 50.0% | |
! | GATCCTACTGGTGGATCAAG+TGG | - | chr6_1:91983157-91983176 | Msa0898420:intron | 50.0% |
TGGGAGCAGGTGAAACTGAA+TGG | - | chr6_1:91983177-91983196 | Msa0898420:intron | 50.0% | |
GGAGCTCCCAGTTATTTGAC+AGG | - | chr6_1:91983198-91983217 | Msa0898420:intron | 50.0% | |
! | TTGACGGCGGTGGTGTGTTT+TGG | + | chr6_1:91980206-91980225 | None:intergenic | 55.0% |
CTCTCTGAATCGCGTCCAAC+TGG | - | chr6_1:91980529-91980548 | Msa0898420:intron | 55.0% | |
!! | ACTTGGCCTTGCTAAGTGGG+TGG | - | chr6_1:91981717-91981736 | Msa0898420:intron | 55.0% |
CCACTTCCACCCACTTAGCA+AGG | + | chr6_1:91981726-91981745 | None:intergenic | 55.0% | |
CCTTGCTAAGTGGGTGGAAG+TGG | - | chr6_1:91981723-91981742 | Msa0898420:intron | 55.0% | |
CTCCCACTTGATCCACCAGT+AGG | + | chr6_1:91983163-91983182 | None:intergenic | 55.0% | |
GACGGCGACCACGAGATTGA+CGG | + | chr6_1:91980222-91980241 | None:intergenic | 60.0% | |
! | CTGGTGGATCAAGTGGGAGC+AGG | - | chr6_1:91983164-91983183 | Msa0898420:intron | 60.0% |
CACCACCGCCGTCAATCTCG+TGG | - | chr6_1:91980211-91980230 | Msa0898420:three_prime_UTR | 65.0% | |
GACCACGAGATTGACGGCGG+TGG | + | chr6_1:91980216-91980235 | None:intergenic | 65.0% | |
GGCGACCACGAGATTGACGG+CGG | + | chr6_1:91980219-91980238 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 91980161 | 91984345 | 91980161 | ID=Msa0898420;Name=Msa0898420 |
chr6_1 | mRNA | 91980161 | 91984345 | 91980161 | ID=Msa0898420-mRNA-1;Parent=Msa0898420;Name=Msa0898420-mRNA-1;_AED=0.14;_eAED=0.17;_QI=1033|0.66|0.8|1|0.11|0.1|10|529|108 |
chr6_1 | exon | 91980161 | 91980540 | 91980161 | ID=Msa0898420-mRNA-1:exon:15583;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91980632 | 91980732 | 91980632 | ID=Msa0898420-mRNA-1:exon:15582;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91981105 | 91981192 | 91981105 | ID=Msa0898420-mRNA-1:exon:15581;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91981321 | 91981373 | 91981321 | ID=Msa0898420-mRNA-1:exon:15580;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91981923 | 91981929 | 91981923 | ID=Msa0898420-mRNA-1:exon:15579;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91982082 | 91983084 | 91982082 | ID=Msa0898420-mRNA-1:exon:15578;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91983670 | 91983701 | 91983670 | ID=Msa0898420-mRNA-1:exon:15577;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91983803 | 91983867 | 91983803 | ID=Msa0898420-mRNA-1:exon:15576;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91983956 | 91983993 | 91983956 | ID=Msa0898420-mRNA-1:exon:15575;Parent=Msa0898420-mRNA-1 |
chr6_1 | exon | 91984224 | 91984345 | 91984224 | ID=Msa0898420-mRNA-1:exon:15574;Parent=Msa0898420-mRNA-1 |
chr6_1 | five_prime_UTR | 91984224 | 91984345 | 91984224 | ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | five_prime_UTR | 91983956 | 91983993 | 91983956 | ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | five_prime_UTR | 91983803 | 91983867 | 91983803 | ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | five_prime_UTR | 91983670 | 91983701 | 91983670 | ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | five_prime_UTR | 91982309 | 91983084 | 91982309 | ID=Msa0898420-mRNA-1:five_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | CDS | 91982082 | 91982308 | 91982082 | ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1 |
chr6_1 | CDS | 91981923 | 91981929 | 91981923 | ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1 |
chr6_1 | CDS | 91981321 | 91981373 | 91981321 | ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1 |
chr6_1 | CDS | 91981153 | 91981192 | 91981153 | ID=Msa0898420-mRNA-1:cds;Parent=Msa0898420-mRNA-1 |
chr6_1 | three_prime_UTR | 91981105 | 91981152 | 91981105 | ID=Msa0898420-mRNA-1:three_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | three_prime_UTR | 91980632 | 91980732 | 91980632 | ID=Msa0898420-mRNA-1:three_prime_utr;Parent=Msa0898420-mRNA-1 |
chr6_1 | three_prime_UTR | 91980161 | 91980540 | 91980161 | ID=Msa0898420-mRNA-1:three_prime_utr;Parent=Msa0898420-mRNA-1 |
Gene Sequence |
Protein sequence |