Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898980 | XP_013453036.1 | 92.140 | 229 | 5 | 2 | 1 | 217 | 1 | 228 | 2.93e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898980 | sp|O48962|EBP_ARATH | 61.395 | 215 | 70 | 2 | 15 | 217 | 6 | 219 | 2.04e-80 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898980 | A0A072UB85 | 92.140 | 229 | 5 | 2 | 1 | 217 | 1 | 228 | 1.40e-147 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0898980 | Msa0998790 | 0.825615 | 4.255548e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898980 | MtrunA17_Chr6g0484851 | 92.140 | 229 | 5 | 2 | 1 | 217 | 1 | 228 | 2.69e-151 | 419 |
| Msa0898980 | MtrunA17_Chr6g0484861 | 91.667 | 84 | 7 | 0 | 128 | 211 | 3 | 86 | 1.18e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898980 | AT1G20050.1 | 61.395 | 215 | 70 | 2 | 15 | 217 | 6 | 219 | 2.07e-81 | 242 |
Find 56 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATATAACGGCGATTT+TGG | 0.227663 | 6_1:+93758377 | Msa0898980:CDS |
| CCAGGAAGATGTAGGTCTTT+TGG | 0.251161 | 6_1:-93755790 | None:intergenic |
| GTTTCATTGGGTCAGCTATA+TGG | 0.285315 | 6_1:+93758345 | Msa0898980:CDS |
| GACTAATATGGTTTAGATAA+AGG | 0.287017 | 6_1:+93758620 | Msa0898980:three_prime_UTR |
| GCACTCACATGGTTCTTATC+AGG | 0.290427 | 6_1:+93755883 | Msa0898980:CDS |
| TGAAGGACTGACGGCAGTTT+TGG | 0.293804 | 6_1:+93757968 | Msa0898980:CDS |
| AAGAATAATGATGACTAATA+TGG | 0.306435 | 6_1:+93758608 | Msa0898980:three_prime_UTR |
| ACTTCAATTTGCCGTTTCAT+TGG | 0.338392 | 6_1:+93758332 | Msa0898980:CDS |
| TCCAACATTCTCTCTGTCTA+TGG | 0.343158 | 6_1:+93755838 | Msa0898980:CDS |
| CGATCATTTCCATTCGCTGC+TGG | 0.352007 | 6_1:+93758481 | Msa0898980:CDS |
| TTGATAGGCTGCTAATATTC+TGG | 0.361676 | 6_1:+93757420 | Msa0898980:CDS |
| GAACTTTAGTCTTTCTTGTC+TGG | 0.384457 | 6_1:-93758536 | None:intergenic |
| ACTAATATGGTTTAGATAAA+GGG | 0.394209 | 6_1:+93758621 | Msa0898980:three_prime_UTR |
| CCAAAAGACCTACATCTTCC+TGG | 0.400982 | 6_1:+93755790 | Msa0898980:CDS |
| ACATTGGAGCAAATTTCTCT+TGG | 0.421154 | 6_1:+93758445 | Msa0898980:CDS |
| CTTCAATTTGCCGTTTCATT+GGG | 0.426704 | 6_1:+93758333 | Msa0898980:CDS |
| TTGTTTGACTCTTCTTGAGT+TGG | 0.435110 | 6_1:-93755673 | None:intergenic |
| GGAGGGCCCGGCTAGTCTAC+TGG | 0.435571 | 6_1:+93757989 | Msa0898980:CDS |
| TCAAGAAAACAAAAGTTGAT+AGG | 0.443044 | 6_1:+93757405 | Msa0898980:CDS |
| ATATTCTGGTGGGCATTCAC+TGG | 0.467011 | 6_1:+93757434 | Msa0898980:CDS |
| GACAGATATGCAATAGCTAC+TGG | 0.468135 | 6_1:+93758291 | Msa0898980:intron |
| TACTACTATGCATACTACAT+TGG | 0.482991 | 6_1:+93758429 | Msa0898980:CDS |
| TCATCCTCTTTGCACTCACA+TGG | 0.485032 | 6_1:+93755872 | Msa0898980:CDS |
| AGGAAACAAGGAACATAGCC+AGG | 0.499468 | 6_1:-93755808 | None:intergenic |
| CCTCACACACCTCATTCTTG+AGG | 0.501352 | 6_1:+93757457 | Msa0898980:CDS |
| CTCACACACCTCATTCTTGA+GGG | 0.503323 | 6_1:+93757458 | Msa0898980:CDS |
| GCTGCGGTAGTGGCTGTTGA+AGG | 0.519309 | 6_1:+93757951 | Msa0898980:CDS |
| TCATCATTATTCTTTGCTCT+AGG | 0.522616 | 6_1:-93758599 | None:intergenic |
| AACTGCTGCATATTATATAA+CGG | 0.526500 | 6_1:+93758368 | Msa0898980:CDS |
| GTTGGACTATATAAGAGTGT+TGG | 0.531671 | 6_1:-93755655 | None:intergenic |
| AGCAAGGGATGCTGCGGTAG+TGG | 0.532859 | 6_1:+93757941 | Msa0898980:intron |
| ACCATAGACAGAGAGAATGT+TGG | 0.536705 | 6_1:-93755839 | None:intergenic |
| AGAGAATGTTGGATTGAGAG+AGG | 0.537876 | 6_1:-93755828 | None:intergenic |
| GGGATCTCAAACGTCACAAA+GGG | 0.540985 | 6_1:+93755741 | Msa0898980:CDS |
| CGAAGTAACCCTCAAGAATG+AGG | 0.541309 | 6_1:-93757466 | None:intergenic |
| TACACTGCCAGTAGACTAGC+CGG | 0.548548 | 6_1:-93757996 | None:intergenic |
| CATTCACACATTCAGCACAT+TGG | 0.559263 | 6_1:+93758766 | Msa0898980:three_prime_UTR |
| TGCAAAGAGGATGACAAAGA+AGG | 0.580457 | 6_1:-93755863 | None:intergenic |
| TCATTTCCATTCGCTGCTGG+AGG | 0.582729 | 6_1:+93758484 | Msa0898980:CDS |
| ATATAGCTGACCCAATGAAA+CGG | 0.585123 | 6_1:-93758343 | None:intergenic |
| GAACATAGCCAGGAAGATGT+AGG | 0.592604 | 6_1:-93755798 | None:intergenic |
| ATAGGCTGCTAATATTCTGG+TGG | 0.600913 | 6_1:+93757423 | Msa0898980:CDS |
| CAGCGAATGGAAATGATCGA+GGG | 0.602586 | 6_1:-93758477 | None:intergenic |
| TTGGATTGAGAGAGGAAACA+AGG | 0.609496 | 6_1:-93755820 | None:intergenic |
| ACAGATATGCAATAGCTACT+GGG | 0.615940 | 6_1:+93758292 | Msa0898980:intron |
| CCTCAAGAATGAGGTGTGTG+AGG | 0.636537 | 6_1:-93757457 | None:intergenic |
| AGGGATCTCAAACGTCACAA+AGG | 0.641203 | 6_1:+93755740 | Msa0898980:CDS |
| GCAGCGAATGGAAATGATCG+AGG | 0.642347 | 6_1:-93758478 | None:intergenic |
| AGAACCATGTGAGTGCAAAG+AGG | 0.648574 | 6_1:-93755876 | None:intergenic |
| AGTGGCTGTTGAAGGACTGA+CGG | 0.652130 | 6_1:+93757959 | Msa0898980:CDS |
| GTATGTAGCAAGGGATGCTG+CGG | 0.656410 | 6_1:+93757935 | Msa0898980:intron |
| TAGGCTGCTAATATTCTGGT+GGG | 0.660483 | 6_1:+93757424 | Msa0898980:CDS |
| AGCGAATGGAAATGATCGAG+GGG | 0.667821 | 6_1:-93758476 | None:intergenic |
| ATAACTTACAAACTTCAGCA+AGG | 0.674604 | 6_1:-93757529 | None:intergenic |
| ACACTGCCAGTAGACTAGCC+GGG | 0.682031 | 6_1:-93757995 | None:intergenic |
| GCTTTGAACTCGAAATGCAG+CGG | 0.714217 | 6_1:-93758514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGCTTTTATAATGAAAAAA+TGG | - | chr6_1:93756042-93756061 | None:intergenic | 15.0% |
| !!! | TTTTCCCTTAATATTATTAT+AGG | + | chr6_1:93757885-93757904 | Msa0898980:intron | 15.0% |
| !! | TTTCCCTTAATATTATTATA+GGG | + | chr6_1:93757886-93757905 | Msa0898980:intron | 15.0% |
| !!! | ATTATTTTAAGTCATTCTTA+TGG | + | chr6_1:93758712-93758731 | Msa0898980:three_prime_UTR | 15.0% |
| !!! | TTGAGATTTTTTCAATAACA+TGG | + | chr6_1:93755931-93755950 | Msa0898980:intron | 20.0% |
| !! | AATGAACAAATTAAGCTAAT+GGG | - | chr6_1:93756005-93756024 | None:intergenic | 20.0% |
| !! | AAATGAACAAATTAAGCTAA+TGG | - | chr6_1:93756006-93756025 | None:intergenic | 20.0% |
| !!! | TTTTCATTATAAAAGCTTTG+TGG | + | chr6_1:93756044-93756063 | Msa0898980:intron | 20.0% |
| !!! | TTTCATTATAAAAGCTTTGT+GGG | + | chr6_1:93756045-93756064 | Msa0898980:intron | 20.0% |
| !!! | TTTGAGATATTTCAATAAGA+AGG | + | chr6_1:93756085-93756104 | Msa0898980:intron | 20.0% |
| !! | AAGGAAAAAAAAAGTTCAAT+TGG | + | chr6_1:93756108-93756127 | Msa0898980:intron | 20.0% |
| !! | AAAAAAAAGTTCAATTGGAT+TGG | + | chr6_1:93756113-93756132 | Msa0898980:intron | 20.0% |
| !!! | TAGGTCTTATAATGAAAAAA+CGG | - | chr6_1:93756197-93756216 | None:intergenic | 20.0% |
| !!! | AGAAATTAGGTTTTAAATTG+CGG | + | chr6_1:93756255-93756274 | Msa0898980:intron | 20.0% |
| !! | AACAAAATTGTGATTAAATG+TGG | + | chr6_1:93756302-93756321 | Msa0898980:intron | 20.0% |
| !! | ATGTGGTTGAAATTAATAAA+TGG | + | chr6_1:93756909-93756928 | Msa0898980:intron | 20.0% |
| !! | AAGAAGAATGTATAACATTA+TGG | - | chr6_1:93757135-93757154 | None:intergenic | 20.0% |
| !! | TGTCATTACTATTTGAATTT+CGG | + | chr6_1:93757317-93757336 | Msa0898980:intron | 20.0% |
| !! | CTTCCCTATAATAATATTAA+GGG | - | chr6_1:93757892-93757911 | None:intergenic | 20.0% |
| !! | AAGAATAATGATGACTAATA+TGG | + | chr6_1:93758608-93758627 | Msa0898980:three_prime_UTR | 20.0% |
| !! | ACTAATATGGTTTAGATAAA+GGG | + | chr6_1:93758621-93758640 | Msa0898980:three_prime_UTR | 20.0% |
| !!! | TCTCAAACTAAGTTGAATTT+TGG | - | chr6_1:93756072-93756091 | None:intergenic | 25.0% |
| ! | AGATATTTCAATAAGAAGGA+AGG | + | chr6_1:93756089-93756108 | Msa0898980:intron | 25.0% |
| !! | TTTTCATTATAAGACCTATG+TGG | + | chr6_1:93756199-93756218 | Msa0898980:intron | 25.0% |
| ! | TTTCATTATAAGACCTATGT+GGG | + | chr6_1:93756200-93756219 | Msa0898980:intron | 25.0% |
| !! | GCTTTGTTAATGTAGAAATT+AGG | + | chr6_1:93756242-93756261 | Msa0898980:intron | 25.0% |
| ! | AGTCTCAGAAATAAAAAATC+TGG | + | chr6_1:93756671-93756690 | Msa0898980:intron | 25.0% |
| ! | TATCACAGTGTTATAAAATG+TGG | + | chr6_1:93756764-93756783 | Msa0898980:intron | 25.0% |
| !!! | TTCTGTTTTGCATTTTTTGA+GGG | + | chr6_1:93756799-93756818 | Msa0898980:intron | 25.0% |
| ! | AAAAATGTAGTAATCTCACT+TGG | - | chr6_1:93756944-93756963 | None:intergenic | 25.0% |
| !!! | AGTGAGATTACTACATTTTT+TGG | + | chr6_1:93756944-93756963 | Msa0898980:intron | 25.0% |
| ! | AGTAACCGTAATGTTATATT+GGG | + | chr6_1:93756987-93757006 | Msa0898980:intron | 25.0% |
| ! | AATTCAAATAGTAATGACAG+CGG | - | chr6_1:93757316-93757335 | None:intergenic | 25.0% |
| ! | AGAAAATCGAAATTCATTTC+AGG | - | chr6_1:93757347-93757366 | None:intergenic | 25.0% |
| !!! | TATCAACTTTTGTTTTCTTG+AGG | - | chr6_1:93757406-93757425 | None:intergenic | 25.0% |
| !! | TCAAGAAAACAAAAGTTGAT+AGG | + | chr6_1:93757405-93757424 | Msa0898980:CDS | 25.0% |
| ! | AATAAGCTAAAAACAGCTTA+AGG | - | chr6_1:93757730-93757749 | None:intergenic | 25.0% |
| ! | ACTGTTTACATAAGTTATCA+TGG | - | chr6_1:93757764-93757783 | None:intergenic | 25.0% |
| ! | CCTTCCCTATAATAATATTA+AGG | - | chr6_1:93757893-93757912 | None:intergenic | 25.0% |
| ! | CCTTAATATTATTATAGGGA+AGG | + | chr6_1:93757890-93757909 | Msa0898980:intron | 25.0% |
| ! | TCATATCATTAGGATATGTT+TGG | - | chr6_1:93758058-93758077 | None:intergenic | 25.0% |
| ! | AGTTTATGCATCATATCATT+AGG | - | chr6_1:93758068-93758087 | None:intergenic | 25.0% |
| ! | AAGATAAAACATAAATTCGC+TGG | - | chr6_1:93758223-93758242 | None:intergenic | 25.0% |
| !! | AGCGAATTTATGTTTTATCT+TGG | + | chr6_1:93758222-93758241 | Msa0898980:intron | 25.0% |
| ! | AACTGCTGCATATTATATAA+CGG | + | chr6_1:93758368-93758387 | Msa0898980:CDS | 25.0% |
| !! | ATATTATATAACGGCGATTT+TGG | + | chr6_1:93758377-93758396 | Msa0898980:CDS | 25.0% |
| ! | GACTAATATGGTTTAGATAA+AGG | + | chr6_1:93758620-93758639 | Msa0898980:three_prime_UTR | 25.0% |
| GTTTCAGATCGAAAAAAACA+TGG | + | chr6_1:93755717-93755736 | Msa0898980:exon | 30.0% | |
| TTTAAGAACAATTTGGACTG+TGG | - | chr6_1:93756700-93756719 | None:intergenic | 30.0% | |
| !!! | AAAGTGAACTATTTTGACCA+GGG | - | chr6_1:93756724-93756743 | None:intergenic | 30.0% |
| !!! | AAAAGTGAACTATTTTGACC+AGG | - | chr6_1:93756725-93756744 | None:intergenic | 30.0% |
| CTCAAAAAATGCAAAACAGA+AGG | - | chr6_1:93756800-93756819 | None:intergenic | 30.0% | |
| !! | CTTCTGTTTTGCATTTTTTG+AGG | + | chr6_1:93756798-93756817 | Msa0898980:intron | 30.0% |
| !!! | TCTGTTTTGCATTTTTTGAG+GGG | + | chr6_1:93756800-93756819 | Msa0898980:intron | 30.0% |
| GTTGGTTGGAAATATAAATG+TGG | + | chr6_1:93756892-93756911 | Msa0898980:intron | 30.0% | |
| CAGTAACCGTAATGTTATAT+TGG | + | chr6_1:93756986-93757005 | Msa0898980:intron | 30.0% | |
| !! | TAGGATTAGGCTTTTTGTTT+TGG | + | chr6_1:93757286-93757305 | Msa0898980:intron | 30.0% |
| AATCGAAATTCATTTCAGGA+TGG | - | chr6_1:93757343-93757362 | None:intergenic | 30.0% | |
| GTATTATCCTTGAAAAACTC+TGG | - | chr6_1:93757500-93757519 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTCAAGGATAATAC+TGG | + | chr6_1:93757500-93757519 | Msa0898980:CDS | 30.0% |
| ATAACTTACAAACTTCAGCA+AGG | - | chr6_1:93757532-93757551 | None:intergenic | 30.0% | |
| TCGAGAAGTTTACAGTTATA+GGG | + | chr6_1:93757611-93757630 | Msa0898980:intron | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr6_1:93757637-93757656 | None:intergenic | 30.0% | |
| AATATAGCAAAGGAGATTCA+AGG | + | chr6_1:93757913-93757932 | Msa0898980:intron | 30.0% | |
| TACTACTATGCATACTACAT+TGG | + | chr6_1:93758429-93758448 | Msa0898980:CDS | 30.0% | |
| ! | TTCGTTGATGCATATTTTTC+AGG | + | chr6_1:93758556-93758575 | Msa0898980:exon | 30.0% |
| TCATCATTATTCTTTGCTCT+AGG | - | chr6_1:93758602-93758621 | None:intergenic | 30.0% | |
| ! | GTTGGACTATATAAGAGTGT+TGG | - | chr6_1:93755658-93755677 | None:intergenic | 35.0% |
| TTGTTTGACTCTTCTTGAGT+TGG | - | chr6_1:93755676-93755695 | None:intergenic | 35.0% | |
| TCAGATCGAAAAAAACATGG+AGG | + | chr6_1:93755720-93755739 | Msa0898980:exon | 35.0% | |
| CAGATCGAAAAAAACATGGA+GGG | + | chr6_1:93755721-93755740 | Msa0898980:exon | 35.0% | |
| !!! | TGTAGGTCTTTTGGAACATA+GGG | - | chr6_1:93755784-93755803 | None:intergenic | 35.0% |
| !!! | ATGTAGGTCTTTTGGAACAT+AGG | - | chr6_1:93755785-93755804 | None:intergenic | 35.0% |
| ! | AATTTGAAACTGACCCACAT+AGG | - | chr6_1:93756216-93756235 | None:intergenic | 35.0% |
| !!! | TAGGTTTTAAATTGCGGTTG+CGG | + | chr6_1:93756261-93756280 | Msa0898980:intron | 35.0% |
| !!! | CCAGGGTTTTAAGAACAATT+TGG | - | chr6_1:93756707-93756726 | None:intergenic | 35.0% |
| CCAAATTGTTCTTAAAACCC+TGG | + | chr6_1:93756704-93756723 | Msa0898980:intron | 35.0% | |
| TAACATTACGGTTACTGAGT+AGG | - | chr6_1:93756983-93757002 | None:intergenic | 35.0% | |
| AACCGTAATGTTATATTGGG+AGG | + | chr6_1:93756990-93757009 | Msa0898980:intron | 35.0% | |
| ACCGTAATGTTATATTGGGA+GGG | + | chr6_1:93756991-93757010 | Msa0898980:intron | 35.0% | |
| GATGTACATTGTCTCTTTCT+AGG | + | chr6_1:93757267-93757286 | Msa0898980:intron | 35.0% | |
| !! | CATTGTCTCTTTCTAGGATT+AGG | + | chr6_1:93757273-93757292 | Msa0898980:intron | 35.0% |
| ! | ACTTGACTGTGAAATTTTGC+AGG | + | chr6_1:93757377-93757396 | Msa0898980:intron | 35.0% |
| TTGATAGGCTGCTAATATTC+TGG | + | chr6_1:93757420-93757439 | Msa0898980:CDS | 35.0% | |
| ! | TTTTGCACCAGAGTTTTTCA+AGG | + | chr6_1:93757490-93757509 | Msa0898980:CDS | 35.0% |
| ATAACTGTAAACTTCTCGAC+AGG | - | chr6_1:93757610-93757629 | None:intergenic | 35.0% | |
| GTCGAGAAGTTTACAGTTAT+AGG | + | chr6_1:93757610-93757629 | Msa0898980:intron | 35.0% | |
| ATAGGGAAGGAATATAGCAA+AGG | + | chr6_1:93757903-93757922 | Msa0898980:intron | 35.0% | |
| AGATTCAAGGTATGTAGCAA+GGG | + | chr6_1:93757926-93757945 | Msa0898980:intron | 35.0% | |
| ! | TGCAGTTTCAAAAGTATGCT+CGG | - | chr6_1:93758033-93758052 | None:intergenic | 35.0% |
| ATACTTATGCAAAGTGTAGC+TGG | - | chr6_1:93758182-93758201 | None:intergenic | 35.0% | |
| ACAGATATGCAATAGCTACT+GGG | + | chr6_1:93758292-93758311 | Msa0898980:intron | 35.0% | |
| ! | ACTTCAATTTGCCGTTTCAT+TGG | + | chr6_1:93758332-93758351 | Msa0898980:CDS | 35.0% |
| ! | CTTCAATTTGCCGTTTCATT+GGG | + | chr6_1:93758333-93758352 | Msa0898980:CDS | 35.0% |
| ATATAGCTGACCCAATGAAA+CGG | - | chr6_1:93758346-93758365 | None:intergenic | 35.0% | |
| ! | TATATAACGGCGATTTTGGA+AGG | + | chr6_1:93758381-93758400 | Msa0898980:CDS | 35.0% |
| ACATTGGAGCAAATTTCTCT+TGG | + | chr6_1:93758445-93758464 | Msa0898980:CDS | 35.0% | |
| ! | GAACTTTAGTCTTTCTTGTC+TGG | - | chr6_1:93758539-93758558 | None:intergenic | 35.0% |
| !!! | TCTTTTGGAACATAGGGATG+AGG | - | chr6_1:93755778-93755797 | None:intergenic | 40.0% |
| TTGGATTGAGAGAGGAAACA+AGG | - | chr6_1:93755823-93755842 | None:intergenic | 40.0% | |
| AGAGAATGTTGGATTGAGAG+AGG | - | chr6_1:93755831-93755850 | None:intergenic | 40.0% | |
| TCCAACATTCTCTCTGTCTA+TGG | + | chr6_1:93755838-93755857 | Msa0898980:CDS | 40.0% | |
| ACCATAGACAGAGAGAATGT+TGG | - | chr6_1:93755842-93755861 | None:intergenic | 40.0% | |
| TGCAAAGAGGATGACAAAGA+AGG | - | chr6_1:93755866-93755885 | None:intergenic | 40.0% | |
| AATCCGAATTCGTGACACAA+TGG | - | chr6_1:93756339-93756358 | None:intergenic | 40.0% | |
| !! | ATTTCTGAGACTCCAACGTT+CGG | - | chr6_1:93756663-93756682 | None:intergenic | 40.0% |
| !! | GTTCCTTCGTTGTTTTGTGT+TGG | + | chr6_1:93756874-93756893 | Msa0898980:intron | 40.0% |
| CAACCAACACAAAACAACGA+AGG | - | chr6_1:93756880-93756899 | None:intergenic | 40.0% | |
| !! | CTTCGTTGTTTTGTGTTGGT+TGG | + | chr6_1:93756878-93756897 | Msa0898980:intron | 40.0% |
| TACTGAGTAGGACATCGAAT+AGG | - | chr6_1:93756971-93756990 | None:intergenic | 40.0% | |
| CCCCTCCCAATATAACATTA+CGG | - | chr6_1:93756995-93757014 | None:intergenic | 40.0% | |
| CCGTAATGTTATATTGGGAG+GGG | + | chr6_1:93756992-93757011 | Msa0898980:intron | 40.0% | |
| CGTAATGTTATATTGGGAGG+GGG | + | chr6_1:93756993-93757012 | Msa0898980:intron | 40.0% | |
| GTAATGTTATATTGGGAGGG+GGG | + | chr6_1:93756994-93757013 | Msa0898980:intron | 40.0% | |
| TAATGTTATATTGGGAGGGG+GGG | + | chr6_1:93756995-93757014 | Msa0898980:intron | 40.0% | |
| TGAGCTAAGGGATAAGAAGT+TGG | + | chr6_1:93757032-93757051 | Msa0898980:intron | 40.0% | |
| GATAAGAAGTTGGACGTTCT+GGG | + | chr6_1:93757042-93757061 | Msa0898980:intron | 40.0% | |
| ! | GTGGATTATAGCATTGAGTC+TGG | - | chr6_1:93757208-93757227 | None:intergenic | 40.0% |
| ATAGGCTGCTAATATTCTGG+TGG | + | chr6_1:93757423-93757442 | Msa0898980:CDS | 40.0% | |
| TAGGCTGCTAATATTCTGGT+GGG | + | chr6_1:93757424-93757443 | Msa0898980:CDS | 40.0% | |
| TTACAGTTATAGGGCCTGTT+TGG | + | chr6_1:93757620-93757639 | Msa0898980:intron | 40.0% | |
| !! | AAGCATTTCTGAGACTGCTT+GGG | + | chr6_1:93757673-93757692 | Msa0898980:intron | 40.0% |
| GCTTAAGGACATGTCATTAG+TGG | - | chr6_1:93757715-93757734 | None:intergenic | 40.0% | |
| GAGATTCAAGGTATGTAGCA+AGG | + | chr6_1:93757925-93757944 | Msa0898980:intron | 40.0% | |
| GACAGATATGCAATAGCTAC+TGG | + | chr6_1:93758291-93758310 | Msa0898980:intron | 40.0% | |
| GTTTCATTGGGTCAGCTATA+TGG | + | chr6_1:93758345-93758364 | Msa0898980:CDS | 40.0% | |
| CATTCACACATTCAGCACAT+TGG | + | chr6_1:93758766-93758785 | Msa0898980:three_prime_UTR | 40.0% | |
| AGGGATCTCAAACGTCACAA+AGG | + | chr6_1:93755740-93755759 | Msa0898980:CDS | 45.0% | |
| GGGATCTCAAACGTCACAAA+GGG | + | chr6_1:93755741-93755760 | Msa0898980:CDS | 45.0% | |
| ! | CCAGGAAGATGTAGGTCTTT+TGG | - | chr6_1:93755793-93755812 | None:intergenic | 45.0% |
| CCAAAAGACCTACATCTTCC+TGG | + | chr6_1:93755790-93755809 | Msa0898980:CDS | 45.0% | |
| GAACATAGCCAGGAAGATGT+AGG | - | chr6_1:93755801-93755820 | None:intergenic | 45.0% | |
| AGGAAACAAGGAACATAGCC+AGG | - | chr6_1:93755811-93755830 | None:intergenic | 45.0% | |
| TCATCCTCTTTGCACTCACA+TGG | + | chr6_1:93755872-93755891 | Msa0898980:CDS | 45.0% | |
| AGAACCATGTGAGTGCAAAG+AGG | - | chr6_1:93755879-93755898 | None:intergenic | 45.0% | |
| GCACTCACATGGTTCTTATC+AGG | + | chr6_1:93755883-93755902 | Msa0898980:CDS | 45.0% | |
| GCTCCATTGTGTCACGAATT+CGG | + | chr6_1:93756333-93756352 | Msa0898980:intron | 45.0% | |
| AATTCGGATTCCCTGCAGTT+AGG | + | chr6_1:93756349-93756368 | Msa0898980:intron | 45.0% | |
| ATTCGGATTCCCTGCAGTTA+GGG | + | chr6_1:93756350-93756369 | Msa0898980:intron | 45.0% | |
| AGTTAGGGAATCTCGCATTC+AGG | + | chr6_1:93756365-93756384 | Msa0898980:intron | 45.0% | |
| !! | TCAGGCATTGGTAACATCCA+TGG | + | chr6_1:93756383-93756402 | Msa0898980:intron | 45.0% |
| !! | AGCTCAACTGGTTTGAGCTA+AGG | + | chr6_1:93757019-93757038 | Msa0898980:intron | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | + | chr6_1:93757020-93757039 | Msa0898980:intron | 45.0% |
| GGATAAGAAGTTGGACGTTC+TGG | + | chr6_1:93757041-93757060 | Msa0898980:intron | 45.0% | |
| ! | CTGGGTTGAAACTCGGATAA+AGG | + | chr6_1:93757060-93757079 | Msa0898980:intron | 45.0% |
| ! | ATATTCTGGTGGGCATTCAC+TGG | + | chr6_1:93757434-93757453 | Msa0898980:CDS | 45.0% |
| CTCACACACCTCATTCTTGA+GGG | + | chr6_1:93757458-93757477 | Msa0898980:CDS | 45.0% | |
| CGAAGTAACCCTCAAGAATG+AGG | - | chr6_1:93757469-93757488 | None:intergenic | 45.0% | |
| GTTATAGGGCCTGTTTGGAT+TGG | + | chr6_1:93757625-93757644 | Msa0898980:intron | 45.0% | |
| AGCAGTCTCAGAAATGCTTG+TGG | - | chr6_1:93757672-93757691 | None:intergenic | 45.0% | |
| !! | CAAGCATTTCTGAGACTGCT+TGG | + | chr6_1:93757672-93757691 | Msa0898980:intron | 45.0% |
| AGCGAATGGAAATGATCGAG+GGG | - | chr6_1:93758479-93758498 | None:intergenic | 45.0% | |
| CAGCGAATGGAAATGATCGA+GGG | - | chr6_1:93758480-93758499 | None:intergenic | 45.0% | |
| ! | AATTTTCCTCCAGCAGCGAA+TGG | - | chr6_1:93758493-93758512 | None:intergenic | 45.0% |
| ! | GCTTTGAACTCGAAATGCAG+CGG | - | chr6_1:93758517-93758536 | None:intergenic | 45.0% |
| AATTGCGGTTGCGGTTGTGA+TGG | + | chr6_1:93756270-93756289 | Msa0898980:intron | 50.0% | |
| TGCGAGATTCCCTAACTGCA+GGG | - | chr6_1:93756362-93756381 | None:intergenic | 50.0% | |
| ATGCGAGATTCCCTAACTGC+AGG | - | chr6_1:93756363-93756382 | None:intergenic | 50.0% | |
| GGAATCTCGCATTCAGGCAT+TGG | + | chr6_1:93756371-93756390 | Msa0898980:intron | 50.0% | |
| TGATCTTGACAGAGCAGCCA+TGG | - | chr6_1:93756403-93756422 | None:intergenic | 50.0% | |
| TGCAGGAAATCCTCATCTGC+AGG | + | chr6_1:93756633-93756652 | Msa0898980:intron | 50.0% | |
| GCAGGAAATCCTCATCTGCA+GGG | + | chr6_1:93756634-93756653 | Msa0898980:intron | 50.0% | |
| ! | GGACGTTCTGGGTTGAAACT+CGG | + | chr6_1:93757053-93757072 | Msa0898980:intron | 50.0% |
| CGCACAAGCTACTACAAGTG+TGG | - | chr6_1:93757227-93757246 | None:intergenic | 50.0% | |
| CCTCAAGAATGAGGTGTGTG+AGG | - | chr6_1:93757460-93757479 | None:intergenic | 50.0% | |
| CCTCACACACCTCATTCTTG+AGG | + | chr6_1:93757457-93757476 | Msa0898980:CDS | 50.0% | |
| GTATGTAGCAAGGGATGCTG+CGG | + | chr6_1:93757935-93757954 | Msa0898980:intron | 50.0% | |
| AGTGGCTGTTGAAGGACTGA+CGG | + | chr6_1:93757959-93757978 | Msa0898980:CDS | 50.0% | |
| ! | TGAAGGACTGACGGCAGTTT+TGG | + | chr6_1:93757968-93757987 | Msa0898980:CDS | 50.0% |
| TACACTGCCAGTAGACTAGC+CGG | - | chr6_1:93757999-93758018 | None:intergenic | 50.0% | |
| GCAGCGAATGGAAATGATCG+AGG | - | chr6_1:93758481-93758500 | None:intergenic | 50.0% | |
| CGATCATTTCCATTCGCTGC+TGG | + | chr6_1:93758481-93758500 | Msa0898980:CDS | 50.0% | |
| TCATTTCCATTCGCTGCTGG+AGG | + | chr6_1:93758484-93758503 | Msa0898980:CDS | 50.0% | |
| GTTCGGATTCCCTGCAGATG+AGG | - | chr6_1:93756646-93756665 | None:intergenic | 55.0% | |
| TCTGCAGGGAATCCGAACGT+TGG | + | chr6_1:93756648-93756667 | Msa0898980:intron | 55.0% | |
| !! | AGGACTGACGGCAGTTTTGG+AGG | + | chr6_1:93757971-93757990 | Msa0898980:CDS | 55.0% |
| !!! | GGACTGACGGCAGTTTTGGA+GGG | + | chr6_1:93757972-93757991 | Msa0898980:CDS | 55.0% |
| ! | ACACTGCCAGTAGACTAGCC+GGG | - | chr6_1:93757998-93758017 | None:intergenic | 55.0% |
| GAACTGCCACCACCGATGTC+TGG | + | chr6_1:93756500-93756519 | Msa0898980:intron | 60.0% | |
| CGCATTCCAGACATCGGTGG+TGG | - | chr6_1:93756509-93756528 | None:intergenic | 60.0% | |
| CCACGCATTCCAGACATCGG+TGG | - | chr6_1:93756512-93756531 | None:intergenic | 60.0% | |
| ! | CCACCGATGTCTGGAATGCG+TGG | + | chr6_1:93756509-93756528 | Msa0898980:intron | 60.0% |
| AGCAAGGGATGCTGCGGTAG+TGG | + | chr6_1:93757941-93757960 | Msa0898980:intron | 60.0% | |
| ! | GCTGCGGTAGTGGCTGTTGA+AGG | + | chr6_1:93757951-93757970 | Msa0898980:CDS | 60.0% |
| !!! | GACGGCAGTTTTGGAGGGCC+CGG | + | chr6_1:93757977-93757996 | Msa0898980:CDS | 65.0% |
| GGGAGGGGGGGTAGCTCAAC+TGG | + | chr6_1:93757007-93757026 | Msa0898980:intron | 70.0% | |
| !! | GGAGGGCCCGGCTAGTCTAC+TGG | + | chr6_1:93757989-93758008 | Msa0898980:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 93755642 | 93758790 | 93755642 | ID=Msa0898980;Name=Msa0898980 |
| chr6_1 | mRNA | 93755642 | 93758790 | 93755642 | ID=Msa0898980-mRNA-1;Parent=Msa0898980;Name=Msa0898980-mRNA-1;_AED=0.40;_eAED=0.40;_QI=94|0.66|0.75|1|1|1|4|227|217 |
| chr6_1 | exon | 93755642 | 93755904 | 93755642 | ID=Msa0898980-mRNA-1:exon:15938;Parent=Msa0898980-mRNA-1 |
| chr6_1 | exon | 93757399 | 93757542 | 93757399 | ID=Msa0898980-mRNA-1:exon:15939;Parent=Msa0898980-mRNA-1 |
| chr6_1 | exon | 93757943 | 93758015 | 93757943 | ID=Msa0898980-mRNA-1:exon:15940;Parent=Msa0898980-mRNA-1 |
| chr6_1 | exon | 93758296 | 93758790 | 93758296 | ID=Msa0898980-mRNA-1:exon:15941;Parent=Msa0898980-mRNA-1 |
| chr6_1 | five_prime_UTR | 93755642 | 93755735 | 93755642 | ID=Msa0898980-mRNA-1:five_prime_utr;Parent=Msa0898980-mRNA-1 |
| chr6_1 | CDS | 93755736 | 93755904 | 93755736 | ID=Msa0898980-mRNA-1:cds;Parent=Msa0898980-mRNA-1 |
| chr6_1 | CDS | 93757399 | 93757542 | 93757399 | ID=Msa0898980-mRNA-1:cds;Parent=Msa0898980-mRNA-1 |
| chr6_1 | CDS | 93757943 | 93758015 | 93757943 | ID=Msa0898980-mRNA-1:cds;Parent=Msa0898980-mRNA-1 |
| chr6_1 | CDS | 93758296 | 93758563 | 93758296 | ID=Msa0898980-mRNA-1:cds;Parent=Msa0898980-mRNA-1 |
| chr6_1 | three_prime_UTR | 93758564 | 93758790 | 93758564 | ID=Msa0898980-mRNA-1:three_prime_utr;Parent=Msa0898980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
