Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998790 | XP_013453036.1 | 97.817 | 229 | 4 | 1 | 1 | 229 | 1 | 228 | 8.96e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998790 | sp|O48962|EBP_ARATH | 66.977 | 215 | 70 | 1 | 15 | 229 | 6 | 219 | 6.45e-94 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998790 | A0A072UB85 | 97.817 | 229 | 4 | 1 | 1 | 229 | 1 | 228 | 4.28e-161 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713290 | Msa0998790 | 0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0898980 | Msa0998790 | 0.825615 | 4.255548e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998790 | MtrunA17_Chr6g0484851 | 97.817 | 229 | 4 | 1 | 1 | 229 | 1 | 228 | 8.24e-165 | 454 |
| Msa0998790 | MtrunA17_Chr6g0484861 | 91.667 | 84 | 7 | 0 | 140 | 223 | 3 | 86 | 2.16e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998790 | AT1G20050.1 | 66.977 | 215 | 70 | 1 | 15 | 229 | 6 | 219 | 6.56e-95 | 277 |
Find 63 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAGATGGTTTAGATAAA+AGG | 0.205658 | 6_4:+80142996 | Msa0998790:three_prime_UTR |
| TCCAACATTCTTTCTGTCTA+TGG | 0.209167 | 6_4:+80140307 | Msa0998790:CDS |
| ATATTATATAACGGCGATTT+TGG | 0.227663 | 6_4:+80142752 | Msa0998790:CDS |
| CCAGGAAGATGTAGGTCTTT+TGG | 0.251161 | 6_4:-80140259 | None:intergenic |
| TTAATTTGAAGTCATTCTTA+TGG | 0.254698 | 6_4:+80143090 | Msa0998790:three_prime_UTR |
| GTTTCATTGGGTCAGCTATA+TGG | 0.285315 | 6_4:+80142720 | Msa0998790:CDS |
| GCACTCACATGGTTCTTATC+AGG | 0.290427 | 6_4:+80140352 | Msa0998790:CDS |
| TGAAGGACTGACGGCAGTTT+TGG | 0.293804 | 6_4:+80142342 | Msa0998790:CDS |
| CAATACAACACAGTTCTCTT+TGG | 0.336139 | 6_4:-80143227 | None:intergenic |
| ACTTCAATTTGCCGTTTCAT+TGG | 0.338392 | 6_4:+80142707 | Msa0998790:CDS |
| CAATTGCAGCTATGCGATAT+TGG | 0.349143 | 6_4:+80143294 | Msa0998790:three_prime_UTR |
| CCATCATTTCCATTCGCTGC+TGG | 0.361518 | 6_4:+80142856 | Msa0998790:CDS |
| TTGATAGGCTGCTAATATTC+TGG | 0.361676 | 6_4:+80141794 | Msa0998790:CDS |
| GAACTTTAGTCTTTCTTGTC+TGG | 0.384457 | 6_4:-80142911 | None:intergenic |
| CTAAGATGGTTTAGATAAAA+GGG | 0.400267 | 6_4:+80142997 | Msa0998790:three_prime_UTR |
| CCAAAAGACCTACATCTTCC+TGG | 0.400982 | 6_4:+80140259 | Msa0998790:CDS |
| ACATTGGAGCAAATTTCTCT+TGG | 0.421154 | 6_4:+80142820 | Msa0998790:CDS |
| CTTCAATTTGCCGTTTCATT+GGG | 0.426704 | 6_4:+80142708 | Msa0998790:CDS |
| TTGTTTGACTCTTCTTGAGT+TGG | 0.435110 | 6_4:-80140141 | None:intergenic |
| GGAGGGCCCGGCTAGTCTAC+TGG | 0.435571 | 6_4:+80142363 | Msa0998790:CDS |
| TCAAGAAAACAAAAGTTGAT+AGG | 0.443044 | 6_4:+80141779 | Msa0998790:CDS |
| ATATTCTGGTGGGCATTCAC+TGG | 0.467011 | 6_4:+80141808 | Msa0998790:CDS |
| GACAGATATGCAATAGCTAC+TGG | 0.468135 | 6_4:+80142666 | Msa0998790:intron |
| CTCAGCACATTGGTTGTCGT+TGG | 0.478561 | 6_4:+80143154 | Msa0998790:three_prime_UTR |
| TACTACTATGCATACTACAT+TGG | 0.482991 | 6_4:+80142804 | Msa0998790:CDS |
| TCATCCTCTTTGCACTCACA+TGG | 0.485032 | 6_4:+80140341 | Msa0998790:CDS |
| AAGAATAATGATGACTAAGA+TGG | 0.485558 | 6_4:+80142983 | Msa0998790:three_prime_UTR |
| AGTTGGACTTATAAGAGTGT+TGG | 0.486074 | 6_4:-80140124 | None:intergenic |
| AGGAAACAAGGAACATAGCC+AGG | 0.499468 | 6_4:-80140277 | None:intergenic |
| CCTCACACACCTCATTCTTG+AGG | 0.501352 | 6_4:+80141831 | Msa0998790:CDS |
| CTCACACACCTCATTCTTGA+GGG | 0.503323 | 6_4:+80141832 | Msa0998790:CDS |
| AATATAGCAAAGGAGATTCA+AGG | 0.509688 | 6_4:+80142287 | Msa0998790:CDS |
| GCTGCGGTAGTGGCTGTTGA+AGG | 0.519309 | 6_4:+80142325 | Msa0998790:CDS |
| CCAGCAGCGAATGGAAATGA+TGG | 0.521190 | 6_4:-80142856 | None:intergenic |
| TCATCATTATTCTTTGCTCT+AGG | 0.522616 | 6_4:-80142974 | None:intergenic |
| AACTGCTGCATATTATATAA+CGG | 0.526500 | 6_4:+80142743 | Msa0998790:CDS |
| ACCATAGACAGAAAGAATGT+TGG | 0.529194 | 6_4:-80140308 | None:intergenic |
| AGCAAGGGATGCTGCGGTAG+TGG | 0.532859 | 6_4:+80142315 | Msa0998790:CDS |
| AAAGAATGTTGGATTGAGAG+AGG | 0.541256 | 6_4:-80140297 | None:intergenic |
| CGAAGTAACCCTCAAGAATG+AGG | 0.541309 | 6_4:-80141840 | None:intergenic |
| TACACTGCCAGTAGACTAGC+CGG | 0.548548 | 6_4:-80142370 | None:intergenic |
| GAGATTCAAGGTATGTAGCA+AGG | 0.570345 | 6_4:+80142299 | Msa0998790:CDS |
| TGCAAAGAGGATGACAAAGA+AGG | 0.580457 | 6_4:-80140332 | None:intergenic |
| AGATTCAAGGTATGTAGCAA+GGG | 0.580598 | 6_4:+80142300 | Msa0998790:CDS |
| TCATTTCCATTCGCTGCTGG+AGG | 0.582729 | 6_4:+80142859 | Msa0998790:CDS |
| ATATAGCTGACCCAATGAAA+CGG | 0.585123 | 6_4:-80142718 | None:intergenic |
| GAACATAGCCAGGAAGATGT+AGG | 0.592604 | 6_4:-80140267 | None:intergenic |
| CAGCGAATGGAAATGATGGA+GGG | 0.596976 | 6_4:-80142852 | None:intergenic |
| ATAGGCTGCTAATATTCTGG+TGG | 0.600913 | 6_4:+80141797 | Msa0998790:CDS |
| TTGGATTGAGAGAGGAAACA+AGG | 0.609496 | 6_4:-80140289 | None:intergenic |
| AGCGAATGGAAATGATGGAG+GGG | 0.610737 | 6_4:-80142851 | None:intergenic |
| ATAGGGAAGGAATATAGCAA+AGG | 0.610897 | 6_4:+80142277 | Msa0998790:intron |
| GCAGCGAATGGAAATGATGG+AGG | 0.614301 | 6_4:-80142853 | None:intergenic |
| ACAGATATGCAATAGCTACT+GGG | 0.615940 | 6_4:+80142667 | Msa0998790:intron |
| ATGTGTATGTTTGCTATGCA+AGG | 0.635795 | 6_4:-80143198 | None:intergenic |
| CCTCAAGAATGAGGTGTGTG+AGG | 0.636537 | 6_4:-80141831 | None:intergenic |
| AGAACCATGTGAGTGCAAAG+AGG | 0.648574 | 6_4:-80140345 | None:intergenic |
| AGTGGCTGTTGAAGGACTGA+CGG | 0.652130 | 6_4:+80142333 | Msa0998790:CDS |
| GTATGTAGCAAGGGATGCTG+CGG | 0.656410 | 6_4:+80142309 | Msa0998790:CDS |
| TAGGCTGCTAATATTCTGGT+GGG | 0.660483 | 6_4:+80141798 | Msa0998790:CDS |
| GCAGCTATGCGATATTGGCG+AGG | 0.665995 | 6_4:+80143299 | Msa0998790:three_prime_UTR |
| ATAACTTACAAACTTCAGCA+AGG | 0.674604 | 6_4:-80141903 | None:intergenic |
| ACACTGCCAGTAGACTAGCC+GGG | 0.682031 | 6_4:-80142369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATAAATTAAGCTAA+GGG | - | chr6_4:80140475-80140494 | None:intergenic | 15.0% |
| !! | TAAATGAATAAATTAAGCTA+AGG | - | chr6_4:80140476-80140495 | None:intergenic | 15.0% |
| !!! | AAGCTTTTATAATGAAAAAA+TGG | - | chr6_4:80140511-80140530 | None:intergenic | 15.0% |
| !! | TATCATTAGTATTTGAATTT+CGG | + | chr6_4:80141691-80141710 | Msa0998790:intron | 15.0% |
| !!! | TTTTCCCTTAATATTATTAT+AGG | + | chr6_4:80142259-80142278 | Msa0998790:intron | 15.0% |
| !! | TTTCCCTTAATATTATTATA+GGG | + | chr6_4:80142260-80142279 | Msa0998790:intron | 15.0% |
| !!! | TTGAGATTTTTTCAATAACA+TGG | + | chr6_4:80140400-80140419 | Msa0998790:intron | 20.0% |
| !! | AATGAATAAATTAAGCTAAG+GGG | - | chr6_4:80140474-80140493 | None:intergenic | 20.0% |
| !!! | TTTTCATTATAAAAGCTTTG+TGG | + | chr6_4:80140513-80140532 | Msa0998790:intron | 20.0% |
| !!! | TTTCATTATAAAAGCTTTGT+GGG | + | chr6_4:80140514-80140533 | Msa0998790:intron | 20.0% |
| !!! | TTTGAGATATTTCAATAAGA+AGG | + | chr6_4:80140554-80140573 | Msa0998790:intron | 20.0% |
| !! | AAGGAAAAAAAAAGTTCAAT+TGG | + | chr6_4:80140577-80140596 | Msa0998790:intron | 20.0% |
| !! | AAAAAAAAGTTCAATTGGAT+TGG | + | chr6_4:80140582-80140601 | Msa0998790:intron | 20.0% |
| !!! | TAGGTCTTATAATGAAAAAA+CGG | - | chr6_4:80140666-80140685 | None:intergenic | 20.0% |
| !! | AAGAAGAATGTATAACATTA+TGG | - | chr6_4:80141509-80141528 | None:intergenic | 20.0% |
| !! | AATTCAAATACTAATGATAG+CGG | - | chr6_4:80141690-80141709 | None:intergenic | 20.0% |
| !! | CTTCCCTATAATAATATTAA+GGG | - | chr6_4:80142266-80142285 | None:intergenic | 20.0% |
| !! | AAGATAAAACATAAATTCAC+TGG | - | chr6_4:80142598-80142617 | None:intergenic | 20.0% |
| !!! | AGTGAATTTATGTTTTATCT+TGG | + | chr6_4:80142597-80142616 | Msa0998790:intron | 20.0% |
| !!! | TTAATTTGAAGTCATTCTTA+TGG | + | chr6_4:80143090-80143109 | Msa0998790:three_prime_UTR | 20.0% |
| ! | TTTCAGATCGAAAAAAAACA+TGG | + | chr6_4:80140186-80140205 | Msa0998790:exon | 25.0% |
| !!! | TCTCAAACTAAGTTGAATTT+TGG | - | chr6_4:80140541-80140560 | None:intergenic | 25.0% |
| ! | AGATATTTCAATAAGAAGGA+AGG | + | chr6_4:80140558-80140577 | Msa0998790:intron | 25.0% |
| !! | TTTTCATTATAAGACCTATG+TGG | + | chr6_4:80140668-80140687 | Msa0998790:intron | 25.0% |
| ! | TTTCATTATAAGACCTATGT+GGG | + | chr6_4:80140669-80140688 | Msa0998790:intron | 25.0% |
| ! | CTTTGTTAATGTAGAAATCT+AGG | + | chr6_4:80140711-80140730 | Msa0998790:intron | 25.0% |
| !!! | GAAATCTAGGTTTTAAATTG+TGG | + | chr6_4:80140724-80140743 | Msa0998790:intron | 25.0% |
| ! | GACAAAATTGTGATTAAATG+TGG | + | chr6_4:80140771-80140790 | Msa0998790:intron | 25.0% |
| !! | TGTTGGTTGGAAATATAAAT+GGG | + | chr6_4:80141265-80141284 | Msa0998790:intron | 25.0% |
| ! | ATGGGGTTGAAATTAATAAA+TGG | + | chr6_4:80141283-80141302 | Msa0998790:intron | 25.0% |
| ! | AAAAATGTAGTAATCTCACT+TGG | - | chr6_4:80141318-80141337 | None:intergenic | 25.0% |
| !!! | AGTGAGATTACTACATTTTT+TGG | + | chr6_4:80141318-80141337 | Msa0998790:intron | 25.0% |
| ! | AGTAACCGTAATGTTATATT+GGG | + | chr6_4:80141361-80141380 | Msa0998790:intron | 25.0% |
| ! | AGAAAATCGAAATTCATTTC+AGG | - | chr6_4:80141721-80141740 | None:intergenic | 25.0% |
| !!! | TATCAACTTTTGTTTTCTTG+AGG | - | chr6_4:80141780-80141799 | None:intergenic | 25.0% |
| !! | TCAAGAAAACAAAAGTTGAT+AGG | + | chr6_4:80141779-80141798 | Msa0998790:CDS | 25.0% |
| ! | TTGAGAAGTTTACAGTTATA+GGG | + | chr6_4:80141985-80142004 | Msa0998790:intron | 25.0% |
| ! | AATAAGCTAAAAACAGCTTA+AGG | - | chr6_4:80142104-80142123 | None:intergenic | 25.0% |
| ! | ACTGTTTACATAAGTTATCA+TGG | - | chr6_4:80142138-80142157 | None:intergenic | 25.0% |
| ! | CCTTCCCTATAATAATATTA+AGG | - | chr6_4:80142267-80142286 | None:intergenic | 25.0% |
| ! | CCTTAATATTATTATAGGGA+AGG | + | chr6_4:80142264-80142283 | Msa0998790:intron | 25.0% |
| ! | TCATATCATTAGGATATGTT+TGG | - | chr6_4:80142432-80142451 | None:intergenic | 25.0% |
| ! | AGTTTATGCATCATATCATT+AGG | - | chr6_4:80142442-80142461 | None:intergenic | 25.0% |
| ! | AACTGCTGCATATTATATAA+CGG | + | chr6_4:80142743-80142762 | Msa0998790:CDS | 25.0% |
| !! | ATATTATATAACGGCGATTT+TGG | + | chr6_4:80142752-80142771 | Msa0998790:CDS | 25.0% |
| ! | AAGAATAATGATGACTAAGA+TGG | + | chr6_4:80142983-80143002 | Msa0998790:three_prime_UTR | 25.0% |
| ! | ACTAAGATGGTTTAGATAAA+AGG | + | chr6_4:80142996-80143015 | Msa0998790:three_prime_UTR | 25.0% |
| ! | CTAAGATGGTTTAGATAAAA+GGG | + | chr6_4:80142997-80143016 | Msa0998790:three_prime_UTR | 25.0% |
| AGATCGAAAAAAAACATGGA+GGG | + | chr6_4:80140190-80140209 | Msa0998790:exon | 30.0% | |
| !!! | TAGGTTTTAAATTGTGGTTG+CGG | + | chr6_4:80140730-80140749 | Msa0998790:intron | 30.0% |
| GAGTCTCAGAAATAAAAATC+TGG | + | chr6_4:80141047-80141066 | Msa0998790:intron | 30.0% | |
| TTTAAGAACAATTTGGACTG+TGG | - | chr6_4:80141076-80141095 | None:intergenic | 30.0% | |
| !!! | AAAGTGAACTATTTTGACCA+GGG | - | chr6_4:80141100-80141119 | None:intergenic | 30.0% |
| !!! | AAAAGTGAACTATTTTGACC+AGG | - | chr6_4:80141101-80141120 | None:intergenic | 30.0% |
| TATCACAGTGTTATAAAGTG+TGG | + | chr6_4:80141140-80141159 | Msa0998790:intron | 30.0% | |
| !! | GTGTTGGTTGGAAATATAAA+TGG | + | chr6_4:80141264-80141283 | Msa0998790:intron | 30.0% |
| GTTGGTTGGAAATATAAATG+GGG | + | chr6_4:80141266-80141285 | Msa0998790:intron | 30.0% | |
| CAGTAACCGTAATGTTATAT+TGG | + | chr6_4:80141360-80141379 | Msa0998790:intron | 30.0% | |
| !! | TAGGATTAGGCTTTTTGTTT+TGG | + | chr6_4:80141660-80141679 | Msa0998790:intron | 30.0% |
| AATCGAAATTCATTTCAGGA+TGG | - | chr6_4:80141717-80141736 | None:intergenic | 30.0% | |
| ! | ACTTGACTATGAAATTTTGC+AGG | + | chr6_4:80141751-80141770 | Msa0998790:intron | 30.0% |
| GTATTATCCTTGAAAAACTC+TGG | - | chr6_4:80141874-80141893 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTCAAGGATAATAC+TGG | + | chr6_4:80141874-80141893 | Msa0998790:CDS | 30.0% |
| ATAACTTACAAACTTCAGCA+AGG | - | chr6_4:80141906-80141925 | None:intergenic | 30.0% | |
| ATAACTGTAAACTTCTCAAC+AGG | - | chr6_4:80141984-80142003 | None:intergenic | 30.0% | |
| GTTGAGAAGTTTACAGTTAT+AGG | + | chr6_4:80141984-80142003 | Msa0998790:intron | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr6_4:80142011-80142030 | None:intergenic | 30.0% | |
| AATATAGCAAAGGAGATTCA+AGG | + | chr6_4:80142287-80142306 | Msa0998790:CDS | 30.0% | |
| TACTACTATGCATACTACAT+TGG | + | chr6_4:80142804-80142823 | Msa0998790:CDS | 30.0% | |
| TCATCATTATTCTTTGCTCT+AGG | - | chr6_4:80142977-80142996 | None:intergenic | 30.0% | |
| ! | CTTGAGCGTTTTTCTTTTTG+AGG | - | chr6_4:80140092-80140111 | None:intergenic | 35.0% |
| ! | AGTTGGACTTATAAGAGTGT+TGG | - | chr6_4:80140127-80140146 | None:intergenic | 35.0% |
| TTGTTTGACTCTTCTTGAGT+TGG | - | chr6_4:80140144-80140163 | None:intergenic | 35.0% | |
| CAGATCGAAAAAAAACATGG+AGG | + | chr6_4:80140189-80140208 | Msa0998790:exon | 35.0% | |
| !!! | TGTAGGTCTTTTGGAACATA+GGG | - | chr6_4:80140253-80140272 | None:intergenic | 35.0% |
| !!! | ATGTAGGTCTTTTGGAACAT+AGG | - | chr6_4:80140254-80140273 | None:intergenic | 35.0% |
| AAAGAATGTTGGATTGAGAG+AGG | - | chr6_4:80140300-80140319 | None:intergenic | 35.0% | |
| TCCAACATTCTTTCTGTCTA+TGG | + | chr6_4:80140307-80140326 | Msa0998790:CDS | 35.0% | |
| ACCATAGACAGAAAGAATGT+TGG | - | chr6_4:80140311-80140330 | None:intergenic | 35.0% | |
| AAATTGAAACTGACCCACAT+AGG | - | chr6_4:80140685-80140704 | None:intergenic | 35.0% | |
| AATCCGAATTCGTAACACAA+TGG | - | chr6_4:80140809-80140828 | None:intergenic | 35.0% | |
| !!! | CCAGGGTTTTAAGAACAATT+TGG | - | chr6_4:80141083-80141102 | None:intergenic | 35.0% |
| CCAAATTGTTCTTAAAACCC+TGG | + | chr6_4:80141080-80141099 | Msa0998790:intron | 35.0% | |
| TAACATTACGGTTACTGAGT+AGG | - | chr6_4:80141357-80141376 | None:intergenic | 35.0% | |
| CCTCTCCCAATATAACATTA+CGG | - | chr6_4:80141369-80141388 | None:intergenic | 35.0% | |
| CGTAATGTTATATTGGGAGA+GGG | + | chr6_4:80141367-80141386 | Msa0998790:intron | 35.0% | |
| GTAATGTTATATTGGGAGAG+GGG | + | chr6_4:80141368-80141387 | Msa0998790:intron | 35.0% | |
| TAATGTTATATTGGGAGAGG+GGG | + | chr6_4:80141369-80141388 | Msa0998790:intron | 35.0% | |
| GATGTACATTGTCTCTTTCT+AGG | + | chr6_4:80141641-80141660 | Msa0998790:intron | 35.0% | |
| !! | CATTGTCTCTTTCTAGGATT+AGG | + | chr6_4:80141647-80141666 | Msa0998790:intron | 35.0% |
| TTGATAGGCTGCTAATATTC+TGG | + | chr6_4:80141794-80141813 | Msa0998790:CDS | 35.0% | |
| ! | TTTTGCACCAGAGTTTTTCA+AGG | + | chr6_4:80141864-80141883 | Msa0998790:CDS | 35.0% |
| ATAGGGAAGGAATATAGCAA+AGG | + | chr6_4:80142277-80142296 | Msa0998790:intron | 35.0% | |
| AGATTCAAGGTATGTAGCAA+GGG | + | chr6_4:80142300-80142319 | Msa0998790:CDS | 35.0% | |
| ! | TGCAGTTTCAAAAGTATGCT+CGG | - | chr6_4:80142407-80142426 | None:intergenic | 35.0% |
| ATACTTATGCAAAGTGTAGC+TGG | - | chr6_4:80142558-80142577 | None:intergenic | 35.0% | |
| ACAGATATGCAATAGCTACT+GGG | + | chr6_4:80142667-80142686 | Msa0998790:intron | 35.0% | |
| ! | ACTTCAATTTGCCGTTTCAT+TGG | + | chr6_4:80142707-80142726 | Msa0998790:CDS | 35.0% |
| ! | CTTCAATTTGCCGTTTCATT+GGG | + | chr6_4:80142708-80142727 | Msa0998790:CDS | 35.0% |
| ATATAGCTGACCCAATGAAA+CGG | - | chr6_4:80142721-80142740 | None:intergenic | 35.0% | |
| ! | TATATAACGGCGATTTTGGA+AGG | + | chr6_4:80142756-80142775 | Msa0998790:CDS | 35.0% |
| ACATTGGAGCAAATTTCTCT+TGG | + | chr6_4:80142820-80142839 | Msa0998790:CDS | 35.0% | |
| ! | GAACTTTAGTCTTTCTTGTC+TGG | - | chr6_4:80142914-80142933 | None:intergenic | 35.0% |
| ! | TTCGTTGATGCAGATTTTTC+AGG | + | chr6_4:80142931-80142950 | Msa0998790:exon | 35.0% |
| !!! | CAGATTTTTCAGGTTGTCAT+CGG | + | chr6_4:80142941-80142960 | Msa0998790:three_prime_UTR | 35.0% |
| !! | ATGTGTATGTTTGCTATGCA+AGG | - | chr6_4:80143201-80143220 | None:intergenic | 35.0% |
| CAATACAACACAGTTCTCTT+TGG | - | chr6_4:80143230-80143249 | None:intergenic | 35.0% | |
| !!! | TCTTTTGGAACATAGGGATG+AGG | - | chr6_4:80140247-80140266 | None:intergenic | 40.0% |
| TTGGATTGAGAGAGGAAACA+AGG | - | chr6_4:80140292-80140311 | None:intergenic | 40.0% | |
| TGCAAAGAGGATGACAAAGA+AGG | - | chr6_4:80140335-80140354 | None:intergenic | 40.0% | |
| AATTGTGGTTGCGGTTATGA+TGG | + | chr6_4:80140739-80140758 | Msa0998790:intron | 40.0% | |
| CCTCCATTGTGTTACGAATT+CGG | + | chr6_4:80140803-80140822 | Msa0998790:intron | 40.0% | |
| !! | ATTTCTGAGACTCCAACGTT+CGG | - | chr6_4:80141040-80141059 | None:intergenic | 40.0% |
| ! | TCCTCCTGTTTTGCATTTTG+AGG | + | chr6_4:80141172-80141191 | Msa0998790:intron | 40.0% |
| ! | CCTCCTGTTTTGCATTTTGA+GGG | + | chr6_4:80141173-80141192 | Msa0998790:intron | 40.0% |
| ! | CTCCTGTTTTGCATTTTGAG+GGG | + | chr6_4:80141174-80141193 | Msa0998790:intron | 40.0% |
| !! | GTTCCTTCGTTGTTTTGTGT+TGG | + | chr6_4:80141248-80141267 | Msa0998790:intron | 40.0% |
| CAACCAACACAAAACAACGA+AGG | - | chr6_4:80141254-80141273 | None:intergenic | 40.0% | |
| !! | CTTCGTTGTTTTGTGTTGGT+TGG | + | chr6_4:80141252-80141271 | Msa0998790:intron | 40.0% |
| TACTGAGTAGGACATCGAAT+AGG | - | chr6_4:80141345-80141364 | None:intergenic | 40.0% | |
| CCGTAATGTTATATTGGGAG+AGG | + | chr6_4:80141366-80141385 | Msa0998790:intron | 40.0% | |
| TGAGCTAAGGGATAAGAAGT+TGG | + | chr6_4:80141406-80141425 | Msa0998790:intron | 40.0% | |
| GATAAGAAGTTGGAGGTTCT+GGG | + | chr6_4:80141416-80141435 | Msa0998790:intron | 40.0% | |
| ! | GTGGATTATAGCATTGAGTC+TGG | - | chr6_4:80141582-80141601 | None:intergenic | 40.0% |
| ATAGGCTGCTAATATTCTGG+TGG | + | chr6_4:80141797-80141816 | Msa0998790:CDS | 40.0% | |
| TAGGCTGCTAATATTCTGGT+GGG | + | chr6_4:80141798-80141817 | Msa0998790:CDS | 40.0% | |
| TTACAGTTATAGGGCCTGTT+TGG | + | chr6_4:80141994-80142013 | Msa0998790:intron | 40.0% | |
| AGCAGTCTCAGAAATGCTTA+TGG | - | chr6_4:80142046-80142065 | None:intergenic | 40.0% | |
| !! | TAAGCATTTCTGAGACTGCT+TGG | + | chr6_4:80142046-80142065 | Msa0998790:intron | 40.0% |
| !! | AAGCATTTCTGAGACTGCTT+GGG | + | chr6_4:80142047-80142066 | Msa0998790:intron | 40.0% |
| GCTTAAGGACATGTCATTAG+TGG | - | chr6_4:80142089-80142108 | None:intergenic | 40.0% | |
| GAGATTCAAGGTATGTAGCA+AGG | + | chr6_4:80142299-80142318 | Msa0998790:CDS | 40.0% | |
| GACAGATATGCAATAGCTAC+TGG | + | chr6_4:80142666-80142685 | Msa0998790:intron | 40.0% | |
| GTTTCATTGGGTCAGCTATA+TGG | + | chr6_4:80142720-80142739 | Msa0998790:CDS | 40.0% | |
| ! | CTTTTACACACTCAGCACAT+TGG | + | chr6_4:80143144-80143163 | Msa0998790:three_prime_UTR | 40.0% |
| CAATTGCAGCTATGCGATAT+TGG | + | chr6_4:80143294-80143313 | Msa0998790:three_prime_UTR | 40.0% | |
| ! | CCAGGAAGATGTAGGTCTTT+TGG | - | chr6_4:80140262-80140281 | None:intergenic | 45.0% |
| CCAAAAGACCTACATCTTCC+TGG | + | chr6_4:80140259-80140278 | Msa0998790:CDS | 45.0% | |
| GAACATAGCCAGGAAGATGT+AGG | - | chr6_4:80140270-80140289 | None:intergenic | 45.0% | |
| AGGAAACAAGGAACATAGCC+AGG | - | chr6_4:80140280-80140299 | None:intergenic | 45.0% | |
| TCATCCTCTTTGCACTCACA+TGG | + | chr6_4:80140341-80140360 | Msa0998790:CDS | 45.0% | |
| AGAACCATGTGAGTGCAAAG+AGG | - | chr6_4:80140348-80140367 | None:intergenic | 45.0% | |
| GCACTCACATGGTTCTTATC+AGG | + | chr6_4:80140352-80140371 | Msa0998790:CDS | 45.0% | |
| CCGAATTCGTAACACAATGG+AGG | - | chr6_4:80140806-80140825 | None:intergenic | 45.0% | |
| AATTCGGATTCCCTGCAGTT+AGG | + | chr6_4:80140819-80140838 | Msa0998790:intron | 45.0% | |
| ATTCGGATTCCCTGCAGTTA+GGG | + | chr6_4:80140820-80140839 | Msa0998790:intron | 45.0% | |
| AGTTAGGGAATCTCGCATTC+AGG | + | chr6_4:80140835-80140854 | Msa0998790:intron | 45.0% | |
| !! | TCAGGCATTGGTAACATCCA+TGG | + | chr6_4:80140853-80140872 | Msa0998790:intron | 45.0% |
| CATCCACACATTCCAGACAT+CGG | - | chr6_4:80140992-80141011 | None:intergenic | 45.0% | |
| CCCTCAAAATGCAAAACAGG+AGG | - | chr6_4:80141176-80141195 | None:intergenic | 45.0% | |
| CTCCCCTCAAAATGCAAAAC+AGG | - | chr6_4:80141179-80141198 | None:intergenic | 45.0% | |
| !! | AGCTCAACTGGTTTGAGCTA+AGG | + | chr6_4:80141393-80141412 | Msa0998790:intron | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | + | chr6_4:80141394-80141413 | Msa0998790:intron | 45.0% |
| GCTAAGGGATAAGAAGTTGG+AGG | + | chr6_4:80141409-80141428 | Msa0998790:intron | 45.0% | |
| GGATAAGAAGTTGGAGGTTC+TGG | + | chr6_4:80141415-80141434 | Msa0998790:intron | 45.0% | |
| ! | CTGGGTTGAAACTCGGATAA+AGG | + | chr6_4:80141434-80141453 | Msa0998790:intron | 45.0% |
| ! | ATATTCTGGTGGGCATTCAC+TGG | + | chr6_4:80141808-80141827 | Msa0998790:CDS | 45.0% |
| CTCACACACCTCATTCTTGA+GGG | + | chr6_4:80141832-80141851 | Msa0998790:CDS | 45.0% | |
| CGAAGTAACCCTCAAGAATG+AGG | - | chr6_4:80141843-80141862 | None:intergenic | 45.0% | |
| GTTATAGGGCCTGTTTGGAT+TGG | + | chr6_4:80141999-80142018 | Msa0998790:intron | 45.0% | |
| ! | AGCGAATGGAAATGATGGAG+GGG | - | chr6_4:80142854-80142873 | None:intergenic | 45.0% |
| ! | CAGCGAATGGAAATGATGGA+GGG | - | chr6_4:80142855-80142874 | None:intergenic | 45.0% |
| ! | AATTTTCCTCCAGCAGCGAA+TGG | - | chr6_4:80142868-80142887 | None:intergenic | 45.0% |
| TGCGAGATTCCCTAACTGCA+GGG | - | chr6_4:80140832-80140851 | None:intergenic | 50.0% | |
| ATGCGAGATTCCCTAACTGC+AGG | - | chr6_4:80140833-80140852 | None:intergenic | 50.0% | |
| GGAATCTCGCATTCAGGCAT+TGG | + | chr6_4:80140841-80140860 | Msa0998790:intron | 50.0% | |
| TGATCTTGACAGAGCAGCCA+TGG | - | chr6_4:80140873-80140892 | None:intergenic | 50.0% | |
| ! | TGTCTGGAATGTGTGGATGC+AGG | + | chr6_4:80140993-80141012 | Msa0998790:intron | 50.0% |
| TGCAGGAAATCCTCATCTGC+AGG | + | chr6_4:80141010-80141029 | Msa0998790:intron | 50.0% | |
| GCAGGAAATCCTCATCTGCA+GGG | + | chr6_4:80141011-80141030 | Msa0998790:intron | 50.0% | |
| !! | GGAGGTTCTGGGTTGAAACT+CGG | + | chr6_4:80141427-80141446 | Msa0998790:intron | 50.0% |
| CGCACAAGCTACTACAAGTG+TGG | - | chr6_4:80141601-80141620 | None:intergenic | 50.0% | |
| CCTCAAGAATGAGGTGTGTG+AGG | - | chr6_4:80141834-80141853 | None:intergenic | 50.0% | |
| CCTCACACACCTCATTCTTG+AGG | + | chr6_4:80141831-80141850 | Msa0998790:CDS | 50.0% | |
| GTATGTAGCAAGGGATGCTG+CGG | + | chr6_4:80142309-80142328 | Msa0998790:CDS | 50.0% | |
| AGTGGCTGTTGAAGGACTGA+CGG | + | chr6_4:80142333-80142352 | Msa0998790:CDS | 50.0% | |
| ! | TGAAGGACTGACGGCAGTTT+TGG | + | chr6_4:80142342-80142361 | Msa0998790:CDS | 50.0% |
| TACACTGCCAGTAGACTAGC+CGG | - | chr6_4:80142373-80142392 | None:intergenic | 50.0% | |
| GCAGCGAATGGAAATGATGG+AGG | - | chr6_4:80142856-80142875 | None:intergenic | 50.0% | |
| CCAGCAGCGAATGGAAATGA+TGG | - | chr6_4:80142859-80142878 | None:intergenic | 50.0% | |
| CCATCATTTCCATTCGCTGC+TGG | + | chr6_4:80142856-80142875 | Msa0998790:CDS | 50.0% | |
| TCATTTCCATTCGCTGCTGG+AGG | + | chr6_4:80142859-80142878 | Msa0998790:CDS | 50.0% | |
| ! | CTCAGCACATTGGTTGTCGT+TGG | + | chr6_4:80143154-80143173 | Msa0998790:three_prime_UTR | 50.0% |
| CACATTCCAGACATCGGTGG+TGG | - | chr6_4:80140986-80141005 | None:intergenic | 55.0% | |
| CCACACATTCCAGACATCGG+TGG | - | chr6_4:80140989-80141008 | None:intergenic | 55.0% | |
| ! | CCACCGATGTCTGGAATGTG+TGG | + | chr6_4:80140986-80141005 | Msa0998790:intron | 55.0% |
| GTTCGGATTCCCTGCAGATG+AGG | - | chr6_4:80141023-80141042 | None:intergenic | 55.0% | |
| TCTGCAGGGAATCCGAACGT+TGG | + | chr6_4:80141025-80141044 | Msa0998790:intron | 55.0% | |
| !! | AGGACTGACGGCAGTTTTGG+AGG | + | chr6_4:80142345-80142364 | Msa0998790:CDS | 55.0% |
| !!! | GGACTGACGGCAGTTTTGGA+GGG | + | chr6_4:80142346-80142365 | Msa0998790:CDS | 55.0% |
| ! | ACACTGCCAGTAGACTAGCC+GGG | - | chr6_4:80142372-80142391 | None:intergenic | 55.0% |
| ! | CAGACATCGGTGGTGGCAGT+TGG | - | chr6_4:80140979-80140998 | None:intergenic | 60.0% |
| CAACTGCCACCACCGATGTC+TGG | + | chr6_4:80140977-80140996 | Msa0998790:intron | 60.0% | |
| AGCAAGGGATGCTGCGGTAG+TGG | + | chr6_4:80142315-80142334 | Msa0998790:CDS | 60.0% | |
| ! | GCTGCGGTAGTGGCTGTTGA+AGG | + | chr6_4:80142325-80142344 | Msa0998790:CDS | 60.0% |
| GGGAGAGGGGGTAGCTCAAC+TGG | + | chr6_4:80141381-80141400 | Msa0998790:intron | 65.0% | |
| !!! | GACGGCAGTTTTGGAGGGCC+CGG | + | chr6_4:80142351-80142370 | Msa0998790:CDS | 65.0% |
| !! | GGAGGGCCCGGCTAGTCTAC+TGG | + | chr6_4:80142363-80142382 | Msa0998790:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 80140071 | 80143318 | 80140071 | ID=Msa0998790;Name=Msa0998790 |
| chr6_4 | mRNA | 80140071 | 80143318 | 80140071 | ID=Msa0998790-mRNA-1;Parent=Msa0998790;Name=Msa0998790-mRNA-1;_AED=0.32;_eAED=0.32;_QI=134|1|1|1|1|1|4|380|229 |
| chr6_4 | exon | 80140071 | 80140373 | 80140071 | ID=Msa0998790-mRNA-1:exon:15197;Parent=Msa0998790-mRNA-1 |
| chr6_4 | exon | 80141773 | 80141916 | 80141773 | ID=Msa0998790-mRNA-1:exon:15198;Parent=Msa0998790-mRNA-1 |
| chr6_4 | exon | 80142281 | 80142389 | 80142281 | ID=Msa0998790-mRNA-1:exon:15199;Parent=Msa0998790-mRNA-1 |
| chr6_4 | exon | 80142671 | 80143318 | 80142671 | ID=Msa0998790-mRNA-1:exon:15200;Parent=Msa0998790-mRNA-1 |
| chr6_4 | five_prime_UTR | 80140071 | 80140204 | 80140071 | ID=Msa0998790-mRNA-1:five_prime_utr;Parent=Msa0998790-mRNA-1 |
| chr6_4 | CDS | 80140205 | 80140373 | 80140205 | ID=Msa0998790-mRNA-1:cds;Parent=Msa0998790-mRNA-1 |
| chr6_4 | CDS | 80141773 | 80141916 | 80141773 | ID=Msa0998790-mRNA-1:cds;Parent=Msa0998790-mRNA-1 |
| chr6_4 | CDS | 80142281 | 80142389 | 80142281 | ID=Msa0998790-mRNA-1:cds;Parent=Msa0998790-mRNA-1 |
| chr6_4 | CDS | 80142671 | 80142938 | 80142671 | ID=Msa0998790-mRNA-1:cds;Parent=Msa0998790-mRNA-1 |
| chr6_4 | three_prime_UTR | 80142939 | 80143318 | 80142939 | ID=Msa0998790-mRNA-1:three_prime_utr;Parent=Msa0998790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
