Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899110 | XP_013453051.1 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899110 | sp|P70122|SBDS_MOUSE | 49.593 | 246 | 121 | 2 | 4 | 247 | 2 | 246 | 3.10e-78 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899110 | A0A072UBA1 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0899110 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899110 | Msa0964600 | 0.934672 | 2.809210e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899110 | MtrunA17_Chr6g0485001 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899110 | AT1G43860.1 | 62.803 | 371 | 124 | 6 | 1 | 358 | 1 | 370 | 2.21e-167 | 472 |
| Msa0899110 | AT1G43860.2 | 57.681 | 345 | 123 | 7 | 27 | 358 | 1 | 335 | 3.99e-136 | 391 |
Find 93 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATGTAATTTCAATTTA+AGG | 0.072912 | 6_1:-93928198 | None:intergenic |
| GCACGGATTCAGAAGTTCTT+TGG | 0.262575 | 6_1:-93927757 | None:intergenic |
| CATCGAACATATTTCATTAC+TGG | 0.266920 | 6_1:+93928214 | Msa0899110:three_prime_UTR |
| TACAACAATGTCTCGTTCTT+TGG | 0.271366 | 6_1:+93923252 | Msa0899110:exon |
| CACGGATTCAGAAGTTCTTT+GGG | 0.284543 | 6_1:-93927756 | None:intergenic |
| ACAGGCTCTGGAGTTGATTC+AGG | 0.285367 | 6_1:+93926298 | Msa0899110:intron |
| CAAGACTCTCCTAACAAAAT+AGG | 0.298300 | 6_1:-93928142 | None:intergenic |
| TCATTCCAGTATTTGCTTAG+AGG | 0.304623 | 6_1:+93923684 | Msa0899110:CDS |
| ATTGGAGCCTGGTCTGTATA+AGG | 0.329038 | 6_1:+93927610 | Msa0899110:CDS |
| TGCTTCTTGGAGGTGCTGTT+TGG | 0.331667 | 6_1:-93926186 | None:intergenic |
| CAATGCTGTCTAGTCAGTTC+AGG | 0.331986 | 6_1:+93926055 | Msa0899110:CDS |
| AGGTGTTCTTGCTAAGTCTA+AGG | 0.333707 | 6_1:+93923633 | Msa0899110:CDS |
| CTTCTATTCTTAAGTTTCCT+AGG | 0.338536 | 6_1:+93928400 | Msa0899110:three_prime_UTR |
| AAAAGTGTTTGAGATGTTAC+TGG | 0.342230 | 6_1:+93928082 | Msa0899110:three_prime_UTR |
| ACCCTAACACCGTTCTTTCA+TGG | 0.342417 | 6_1:+93923459 | Msa0899110:CDS |
| CGCCATGAAAGAACGGTGTT+AGG | 0.353355 | 6_1:-93923461 | None:intergenic |
| GGAGGAAGTACCTATCCTTT+TGG | 0.369437 | 6_1:+93926382 | Msa0899110:CDS |
| CTCACTCTCTTTATGTGGAT+GGG | 0.371029 | 6_1:+93927684 | Msa0899110:CDS |
| TTTAAAGAAAGGGGAACTTC+AGG | 0.373529 | 6_1:+93926011 | Msa0899110:CDS |
| AGAAGAGTGCACAGCAGATA+TGG | 0.383434 | 6_1:+93927979 | Msa0899110:CDS |
| ACAAACCTCTAAGCAAATAC+TGG | 0.388442 | 6_1:-93923689 | None:intergenic |
| TGAATCAAAATCTGATTTGA+AGG | 0.396855 | 6_1:+93928009 | Msa0899110:CDS |
| GCTCACTCTCTTTATGTGGA+TGG | 0.397818 | 6_1:+93927683 | Msa0899110:CDS |
| TGTGCGGTTCTGCTTTCTCT+TGG | 0.398110 | 6_1:+93928246 | Msa0899110:three_prime_UTR |
| AAAGGGGAACTTCAGGTTGC+TGG | 0.407398 | 6_1:+93926018 | Msa0899110:CDS |
| ACCGTTCTTTCATGGCGTTC+CGG | 0.423741 | 6_1:+93923467 | Msa0899110:CDS |
| GGTTCTGCTTTCTCTTGGTC+TGG | 0.427589 | 6_1:+93928251 | Msa0899110:three_prime_UTR |
| AGGATAGGTACTTCCTCCTC+AGG | 0.427749 | 6_1:-93926377 | None:intergenic |
| TGTTGTCCCTCAGTAGGCTT+AGG | 0.430168 | 6_1:-93927824 | None:intergenic |
| TTGAAGATGCTAAGTTGTAC+AGG | 0.433138 | 6_1:+93927885 | Msa0899110:CDS |
| TGTCCCTTCTTTAGAAATAA+CGG | 0.436135 | 6_1:-93926429 | None:intergenic |
| TCTTGCTCACTCTCTTTATG+TGG | 0.440257 | 6_1:+93927679 | Msa0899110:CDS |
| TCAATCATGCTGATAGTGTA+AGG | 0.442974 | 6_1:-93926129 | None:intergenic |
| AAGGATTTGAATGCGGCGTT+TGG | 0.443098 | 6_1:+93923652 | Msa0899110:CDS |
| CAAAAGCAAACAATTTCGTC+TGG | 0.443371 | 6_1:+93927800 | Msa0899110:CDS |
| GTTCTTTGGGGCAATGGTGC+AGG | 0.443834 | 6_1:-93927743 | None:intergenic |
| TCCTGAAAATCATGGATACT+TGG | 0.447974 | 6_1:-93928427 | None:intergenic |
| TCAGAAGTTCTTTGGGGCAA+TGG | 0.449572 | 6_1:-93927749 | None:intergenic |
| AGGACAAGATACCTGCTTCT+TGG | 0.450486 | 6_1:-93926199 | None:intergenic |
| GCAACCGTTATTTCTAAAGA+AGG | 0.452079 | 6_1:+93926425 | Msa0899110:CDS |
| TTCTATTCTTAAGTTTCCTA+GGG | 0.456608 | 6_1:+93928401 | Msa0899110:three_prime_UTR |
| GCAGCAGCGCGTACCCTCAA+TGG | 0.474471 | 6_1:-93926353 | None:intergenic |
| CAGATAAGTCCTGAAAATCA+TGG | 0.488086 | 6_1:-93928435 | None:intergenic |
| GTGCACTCTTCTTCAGATAG+TGG | 0.490526 | 6_1:-93927968 | None:intergenic |
| TTTGGTTGTTGTCCCTCAGT+AGG | 0.497330 | 6_1:-93927830 | None:intergenic |
| AGTGTAAGGGCGCTTAGTCT+CGG | 0.500797 | 6_1:-93926115 | None:intergenic |
| TCACTCTCTTTATGTGGATG+GGG | 0.502380 | 6_1:+93927685 | Msa0899110:CDS |
| GCCATGAAAGAACGGTGTTA+GGG | 0.509375 | 6_1:-93923460 | None:intergenic |
| ACGCGCTGCTGCCCCTGAGG+AGG | 0.512519 | 6_1:+93926364 | Msa0899110:CDS |
| ACAAGATACCTGCTTCTTGG+AGG | 0.519410 | 6_1:-93926196 | None:intergenic |
| GTGTAAGGGCGCTTAGTCTC+GGG | 0.522577 | 6_1:-93926114 | None:intergenic |
| CTATAAAACGGTGTCCATTG+AGG | 0.535043 | 6_1:+93926339 | Msa0899110:CDS |
| AAACAGCACCTCCAAGAAGC+AGG | 0.539561 | 6_1:+93926188 | Msa0899110:CDS |
| TGTTTGGATCAACAGCGAAA+TGG | 0.541879 | 6_1:-93926170 | None:intergenic |
| TATAAAACGGTGTCCATTGA+GGG | 0.542061 | 6_1:+93926340 | Msa0899110:CDS |
| TGAAGTGTTGCAGTCACATA+CGG | 0.542659 | 6_1:+93923591 | Msa0899110:CDS |
| TTCATACAAAGTAACAGAAG+TGG | 0.552956 | 6_1:-93928518 | None:intergenic |
| AGAAGCACTACCCTATAAAA+CGG | 0.553845 | 6_1:+93926327 | Msa0899110:CDS |
| AAAAGTCTTGTGCATTACAA+TGG | 0.555238 | 6_1:-93926088 | None:intergenic |
| AATGCTGTCTAGTCAGTTCA+GGG | 0.557997 | 6_1:+93926056 | Msa0899110:CDS |
| GCTTGTGCCACTCACTCTTG+TGG | 0.558268 | 6_1:-93927913 | None:intergenic |
| CAACCGTTATTTCTAAAGAA+GGG | 0.568663 | 6_1:+93926426 | Msa0899110:CDS |
| GCATGATTGAACGCCTCATG+AGG | 0.570502 | 6_1:+93926142 | Msa0899110:CDS |
| GGAAAAGCTGAGCGAGTGGA+AGG | 0.571341 | 6_1:+93926403 | Msa0899110:CDS |
| TTTATCATTCAGCTCAAGCA+CGG | 0.574553 | 6_1:-93927774 | None:intergenic |
| TTTGTTATGAATAAGATGCA+TGG | 0.575041 | 6_1:+93927644 | Msa0899110:CDS |
| CACTCTTCTTCAGATAGTGG+AGG | 0.576466 | 6_1:-93927965 | None:intergenic |
| GGATAGGTACTTCCTCCTCA+GGG | 0.584943 | 6_1:-93926376 | None:intergenic |
| GCCGGAACGCCATGAAAGAA+CGG | 0.596078 | 6_1:-93923468 | None:intergenic |
| GTTTATACGAATGTTTCGAA+AGG | 0.596420 | 6_1:+93923613 | Msa0899110:CDS |
| TTCAGGTTGCTGGTAAAGAG+AGG | 0.599142 | 6_1:+93926028 | Msa0899110:CDS |
| CAATCATGCTGATAGTGTAA+GGG | 0.615053 | 6_1:-93926128 | None:intergenic |
| TGAAGATGCTAAGTTGTACA+GGG | 0.615157 | 6_1:+93927886 | Msa0899110:CDS |
| AGTCTTGTGCATTACAATGG+TGG | 0.616545 | 6_1:-93926085 | None:intergenic |
| CATGGATACTTGGATCCCCT+AGG | 0.627204 | 6_1:-93928417 | None:intergenic |
| CGAAATGGATATCCCTCATG+AGG | 0.633330 | 6_1:-93926155 | None:intergenic |
| TCAGGTTGCTGGTAAAGAGA+GGG | 0.634218 | 6_1:+93926029 | Msa0899110:CDS |
| ACGGATTCAGAAGTTCTTTG+GGG | 0.636915 | 6_1:-93927755 | None:intergenic |
| TGACAATCCTTATACAGACC+AGG | 0.646899 | 6_1:-93927617 | None:intergenic |
| GGGAACACCACAAGAGTGAG+TGG | 0.646994 | 6_1:+93927906 | Msa0899110:CDS |
| ACAATATGAAGCGTAAAACA+AGG | 0.648014 | 6_1:+93927936 | Msa0899110:CDS |
| TGTGGATGGGGATACTCATG+TGG | 0.649096 | 6_1:+93927697 | Msa0899110:CDS |
| ACTCTTCTTCAGATAGTGGA+GGG | 0.651530 | 6_1:-93927964 | None:intergenic |
| CATGATTGAACGCCTCATGA+GGG | 0.655277 | 6_1:+93926143 | Msa0899110:CDS |
| GTCTGGACCTAAGCCTACTG+AGG | 0.658281 | 6_1:+93927817 | Msa0899110:CDS |
| TTGCTCGTGAACAAAGAGCA+TGG | 0.679914 | 6_1:-93928376 | None:intergenic |
| TCTGGACCTAAGCCTACTGA+GGG | 0.681737 | 6_1:+93927818 | Msa0899110:CDS |
| TAAGTCTAAGGATTTGAATG+CGG | 0.687944 | 6_1:+93923645 | Msa0899110:CDS |
| TCTATTCTTAAGTTTCCTAG+GGG | 0.691891 | 6_1:+93928402 | Msa0899110:three_prime_UTR |
| GTTGTTCGTCTCAAGAAACA+CGG | 0.697669 | 6_1:+93923413 | Msa0899110:CDS |
| GATAGGTACTTCCTCCTCAG+GGG | 0.704780 | 6_1:-93926375 | None:intergenic |
| TTACTGGTGACAGATTTGTG+CGG | 0.714129 | 6_1:+93928230 | Msa0899110:three_prime_UTR |
| TGTGGATTACAATGATCACG+AGG | 0.775410 | 6_1:+93927715 | Msa0899110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTATAATTAATAACA+GGG | - | chr6_1:93927474-93927493 | None:intergenic | 10.0% |
| !! | AAAGAATTATAATTAATAAC+AGG | - | chr6_1:93927475-93927494 | None:intergenic | 10.0% |
| !! | CATAATAATCACAAAAATTA+GGG | - | chr6_1:93923512-93923531 | None:intergenic | 15.0% |
| !! | ACATAATAATCACAAAAATT+AGG | - | chr6_1:93923513-93923532 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTGATGAATAAAA+GGG | - | chr6_1:93925213-93925232 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTTGATGAATAAA+AGG | - | chr6_1:93925214-93925233 | None:intergenic | 15.0% |
| !! | AAATAATGTTTATTCAAAGT+TGG | + | chr6_1:93925273-93925292 | Msa0899110:intron | 15.0% |
| !! | AAAAAAAAGAAAAAAGCTTA+TGG | - | chr6_1:93925442-93925461 | None:intergenic | 15.0% |
| !!! | ATAAGCTTTTTTCTTTTTTT+TGG | + | chr6_1:93925441-93925460 | Msa0899110:intron | 15.0% |
| !!! | TTTTTTGGAATAAGTTATTT+AGG | + | chr6_1:93925456-93925475 | Msa0899110:intron | 15.0% |
| !! | AGAATATTTACAACTTATTT+GGG | + | chr6_1:93925650-93925669 | Msa0899110:intron | 15.0% |
| !!! | AAGATATAAGTTGATTATAA+GGG | - | chr6_1:93925828-93925847 | None:intergenic | 15.0% |
| !! | AAAATAAAACTAGAAATACA+AGG | + | chr6_1:93926881-93926900 | Msa0899110:intron | 15.0% |
| !! | ATTTCAAATATTATTACTGT+TGG | + | chr6_1:93927447-93927466 | Msa0899110:intron | 15.0% |
| !! | AGAATTATAATTAATAACAG+GGG | - | chr6_1:93927473-93927492 | None:intergenic | 15.0% |
| !!! | ATAACAACTTTTAATCATTA+AGG | + | chr6_1:93928462-93928481 | Msa0899110:three_prime_UTR | 15.0% |
| !!! | GATTAATTGAGTTAATTTGA+TGG | + | chr6_1:93923533-93923552 | Msa0899110:intron | 20.0% |
| !!! | AGTTAATTTGATGGATTAAT+CGG | + | chr6_1:93923542-93923561 | Msa0899110:intron | 20.0% |
| !!! | ATTGACTTTTTAATAAGCTT+TGG | + | chr6_1:93924114-93924133 | Msa0899110:intron | 20.0% |
| !! | TTTACATAATTTATGCTTAG+AGG | + | chr6_1:93924335-93924354 | Msa0899110:intron | 20.0% |
| !!! | AGGTTTTTAGTTTCTATTTT+GGG | + | chr6_1:93925179-93925198 | Msa0899110:intron | 20.0% |
| !!! | TCTTTTTTGATGAATAAAAG+GGG | - | chr6_1:93925212-93925231 | None:intergenic | 20.0% |
| !! | GAGAATATTTACAACTTATT+TGG | + | chr6_1:93925649-93925668 | Msa0899110:intron | 20.0% |
| !!! | CAAGATATAAGTTGATTATA+AGG | - | chr6_1:93925829-93925848 | None:intergenic | 20.0% |
| !! | CTAATTATTATGCATAAACT+GGG | - | chr6_1:93925929-93925948 | None:intergenic | 20.0% |
| !! | ACTAATTATTATGCATAAAC+TGG | - | chr6_1:93925930-93925949 | None:intergenic | 20.0% |
| !! | TATATGAGACAATCATTATA+TGG | - | chr6_1:93926241-93926260 | None:intergenic | 20.0% |
| !! | AGAATTAATTTATAACCACT+TGG | - | chr6_1:93927226-93927245 | None:intergenic | 20.0% |
| !!! | TATTTGAAATGAAAGAATCA+TGG | - | chr6_1:93927437-93927456 | None:intergenic | 20.0% |
| !! | TAATTGATCTGATTTCTAAT+TGG | + | chr6_1:93927572-93927591 | Msa0899110:intron | 20.0% |
| !! | AATTGATCTGATTTCTAATT+GGG | + | chr6_1:93927573-93927592 | Msa0899110:intron | 20.0% |
| !! | TTCGATGTAATTTCAATTTA+AGG | - | chr6_1:93928201-93928220 | None:intergenic | 20.0% |
| !!! | TTTTATTGAGCTCTTTGTTT+CGG | - | chr6_1:93923193-93923212 | None:intergenic | 25.0% |
| !!! | TTTTAATAAGCTTTGGTGTT+AGG | + | chr6_1:93924121-93924140 | Msa0899110:intron | 25.0% |
| ! | CATAATTTATGCTTAGAGTT+TGG | + | chr6_1:93924339-93924358 | Msa0899110:intron | 25.0% |
| ! | GTATTTGTATTTATCTGCTA+AGG | + | chr6_1:93924719-93924738 | Msa0899110:intron | 25.0% |
| ! | TACAGAAATCATACCAAAAA+TGG | + | chr6_1:93924828-93924847 | Msa0899110:intron | 25.0% |
| ! | TCATAAACCCTCAAATAATA+AGG | - | chr6_1:93925092-93925111 | None:intergenic | 25.0% |
| ! | ACTATCACAATAAACTAGAA+AGG | - | chr6_1:93925145-93925164 | None:intergenic | 25.0% |
| !!! | GAGGTTTTTAGTTTCTATTT+TGG | + | chr6_1:93925178-93925197 | Msa0899110:intron | 25.0% |
| ! | ACTTTCATATAAGTTGTAAG+CGG | - | chr6_1:93925496-93925515 | None:intergenic | 25.0% |
| ! | ATAATCAACTTATATCTTGC+AGG | + | chr6_1:93925830-93925849 | Msa0899110:intron | 25.0% |
| !!! | TGTTGCAGATTTTAAAGAAA+GGG | + | chr6_1:93926001-93926020 | Msa0899110:intron | 25.0% |
| !! | CATTTTATCCAACACAAAAA+CGG | + | chr6_1:93926665-93926684 | Msa0899110:intron | 25.0% |
| ! | TACAGGAATATGTTAATAGT+CGG | + | chr6_1:93926714-93926733 | Msa0899110:intron | 25.0% |
| !! | TTTTATCCAACCCATAAAAA+AGG | + | chr6_1:93926755-93926774 | Msa0899110:intron | 25.0% |
| ! | TTTATCCAACCCATAAAAAA+GGG | + | chr6_1:93926756-93926775 | Msa0899110:intron | 25.0% |
| ! | TGTCATAAATGTTCAAAAGA+TGG | - | chr6_1:93926782-93926801 | None:intergenic | 25.0% |
| !! | TCTTTTGAACATTTATGACA+AGG | + | chr6_1:93926782-93926801 | Msa0899110:intron | 25.0% |
| !! | TCCTTTTATCACATTTTATC+TGG | + | chr6_1:93926822-93926841 | Msa0899110:intron | 25.0% |
| ! | ACCAGATAAAATGTGATAAA+AGG | - | chr6_1:93926826-93926845 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATGTCCTTTTT+AGG | + | chr6_1:93926927-93926946 | Msa0899110:intron | 25.0% |
| !!! | ACTTGTTTGTTTTGAAAACT+CGG | + | chr6_1:93927029-93927048 | Msa0899110:intron | 25.0% |
| !!! | TGCTTGTTTTTGTTTTTTGT+TGG | + | chr6_1:93927119-93927138 | Msa0899110:intron | 25.0% |
| ! | TAACCCATAAAAAAGCTAAT+GGG | + | chr6_1:93927388-93927407 | Msa0899110:intron | 25.0% |
| ! | CTTTGATTCTGCTAAAATTT+CGG | + | chr6_1:93927546-93927565 | Msa0899110:intron | 25.0% |
| !! | TTTGTTATGAATAAGATGCA+TGG | + | chr6_1:93927644-93927663 | Msa0899110:CDS | 25.0% |
| !! | TGAATCAAAATCTGATTTGA+AGG | + | chr6_1:93928009-93928028 | Msa0899110:CDS | 25.0% |
| !!! | AAGGATTATTCATTTTGAGT+TGG | + | chr6_1:93928028-93928047 | Msa0899110:exon | 25.0% |
| ! | TTCTATTCTTAAGTTTCCTA+GGG | + | chr6_1:93928401-93928420 | Msa0899110:three_prime_UTR | 25.0% |
| !! | TAATTTGATGGATTAATCGG+TGG | + | chr6_1:93923545-93923564 | Msa0899110:intron | 30.0% |
| GTTTATACGAATGTTTCGAA+AGG | + | chr6_1:93923613-93923632 | Msa0899110:CDS | 30.0% | |
| TAAGTCTAAGGATTTGAATG+CGG | + | chr6_1:93923645-93923664 | Msa0899110:CDS | 30.0% | |
| TAGCTACAAAACAACTAACA+TGG | - | chr6_1:93923737-93923756 | None:intergenic | 30.0% | |
| AATTGTATATGTCTGTGTTG+TGG | + | chr6_1:93923818-93923837 | Msa0899110:intron | 30.0% | |
| TTTATGCTTAGAGTTTGGTT+AGG | + | chr6_1:93924344-93924363 | Msa0899110:intron | 30.0% | |
| CATAATTTATGCTTAGAGGT+TGG | + | chr6_1:93924381-93924400 | Msa0899110:intron | 30.0% | |
| TGACATTGAATTGATCAAGT+AGG | - | chr6_1:93924412-93924431 | None:intergenic | 30.0% | |
| !!! | TTTTGATAAGCTTTGGTGTT+CGG | + | chr6_1:93924539-93924558 | Msa0899110:intron | 30.0% |
| TTAAGCACTCATGCTTAATT+TGG | + | chr6_1:93924679-93924698 | Msa0899110:intron | 30.0% | |
| TAAGCACTCATGCTTAATTT+GGG | + | chr6_1:93924680-93924699 | Msa0899110:intron | 30.0% | |
| TAACTCATTTCCTAAGCTTA+TGG | - | chr6_1:93924806-93924825 | None:intergenic | 30.0% | |
| GCTTTATCCAATAGTTGAAA+AGG | - | chr6_1:93924910-93924929 | None:intergenic | 30.0% | |
| TGATATCATAAACCTACCTA+TGG | - | chr6_1:93924995-93925014 | None:intergenic | 30.0% | |
| TAGCTCAACCTTATTATTTG+AGG | + | chr6_1:93925081-93925100 | Msa0899110:intron | 30.0% | |
| AGCTCAACCTTATTATTTGA+GGG | + | chr6_1:93925082-93925101 | Msa0899110:intron | 30.0% | |
| TAAAAACCTCTTAGAAAGAG+AGG | - | chr6_1:93925168-93925187 | None:intergenic | 30.0% | |
| ! | ATAAGCACTGTCATAATGTT+TGG | + | chr6_1:93925385-93925404 | Msa0899110:intron | 30.0% |
| ! | TAAGCACTGTCATAATGTTT+GGG | + | chr6_1:93925386-93925405 | Msa0899110:intron | 30.0% |
| !! | TATCTACAGTTGTTTTCAGT+AGG | + | chr6_1:93925675-93925694 | Msa0899110:intron | 30.0% |
| ! | TTGATTATAAGGGTATGCTT+GGG | - | chr6_1:93925818-93925837 | None:intergenic | 30.0% |
| AGTGATTTAACTGTTAGTTG+AGG | + | chr6_1:93925947-93925966 | Msa0899110:intron | 30.0% | |
| !! | CTGTTGCAGATTTTAAAGAA+AGG | + | chr6_1:93926000-93926019 | Msa0899110:intron | 30.0% |
| !! | GTTGCAGATTTTAAAGAAAG+GGG | + | chr6_1:93926002-93926021 | Msa0899110:intron | 30.0% |
| ! | AAAAGTCTTGTGCATTACAA+TGG | - | chr6_1:93926091-93926110 | None:intergenic | 30.0% |
| !! | ATGGAATTCTTTAGAATGAC+AGG | - | chr6_1:93926222-93926241 | None:intergenic | 30.0% |
| GATTATGAAAGTCGTATTAC+AGG | + | chr6_1:93926280-93926299 | Msa0899110:intron | 30.0% | |
| !! | CAACCGTTATTTCTAAAGAA+GGG | + | chr6_1:93926426-93926445 | Msa0899110:CDS | 30.0% |
| ! | TGTCCCTTCTTTAGAAATAA+CGG | - | chr6_1:93926432-93926451 | None:intergenic | 30.0% |
| ! | ATTTTATTCTCTGTAACCCT+GGG | + | chr6_1:93926507-93926526 | Msa0899110:intron | 30.0% |
| GTTGGATAAAATGTGGTAAA+AGG | - | chr6_1:93926746-93926765 | None:intergenic | 30.0% | |
| !! | TTTATGGGTTGGATAAAATG+TGG | - | chr6_1:93926753-93926772 | None:intergenic | 30.0% |
| !!! | AAAAGATGGCCCTTTTTTAT+GGG | - | chr6_1:93926768-93926787 | None:intergenic | 30.0% |
| !!! | TGTTTTGAAAACTCGGTATT+CGG | + | chr6_1:93927036-93927055 | Msa0899110:intron | 30.0% |
| !!! | GTTTTTGTTTTTTGTTGGCA+TGG | + | chr6_1:93927124-93927143 | Msa0899110:intron | 30.0% |
| AACATGACCAAATACTCATT+TGG | + | chr6_1:93927275-93927294 | Msa0899110:intron | 30.0% | |
| ACATGACCAAATACTCATTT+GGG | + | chr6_1:93927276-93927295 | Msa0899110:intron | 30.0% | |
| TTTGATAAGCAGATTGAATG+TGG | - | chr6_1:93927355-93927374 | None:intergenic | 30.0% | |
| CTAACCCATAAAAAAGCTAA+TGG | + | chr6_1:93927387-93927406 | Msa0899110:intron | 30.0% | |
| !!! | CTTCCCATTAGCTTTTTTAT+GGG | - | chr6_1:93927394-93927413 | None:intergenic | 30.0% |
| !!! | ACTTCCCATTAGCTTTTTTA+TGG | - | chr6_1:93927395-93927414 | None:intergenic | 30.0% |
| ATGGAACATTTATAGAGACA+TGG | - | chr6_1:93927418-93927437 | None:intergenic | 30.0% | |
| TATATCTGCATTTGCGTATA+TGG | + | chr6_1:93927512-93927531 | Msa0899110:intron | 30.0% | |
| ACAATATGAAGCGTAAAACA+AGG | + | chr6_1:93927936-93927955 | Msa0899110:CDS | 30.0% | |
| !! | AAAAGTGTTTGAGATGTTAC+TGG | + | chr6_1:93928082-93928101 | Msa0899110:three_prime_UTR | 30.0% |
| !!! | TAAGGAGTTTTTTTTCTCTG+TGG | - | chr6_1:93928183-93928202 | None:intergenic | 30.0% |
| CATCGAACATATTTCATTAC+TGG | + | chr6_1:93928214-93928233 | Msa0899110:three_prime_UTR | 30.0% | |
| CTTCTATTCTTAAGTTTCCT+AGG | + | chr6_1:93928400-93928419 | Msa0899110:three_prime_UTR | 30.0% | |
| TCTATTCTTAAGTTTCCTAG+GGG | + | chr6_1:93928402-93928421 | Msa0899110:three_prime_UTR | 30.0% | |
| ! | GGATTTCTTTTGCATTTGTA+GGG | - | chr6_1:93928500-93928519 | None:intergenic | 30.0% |
| ! | TGGATTTCTTTTGCATTTGT+AGG | - | chr6_1:93928501-93928520 | None:intergenic | 30.0% |
| TACAACAATGTCTCGTTCTT+TGG | + | chr6_1:93923252-93923271 | Msa0899110:exon | 35.0% | |
| ! | TTTAGAATTTACGTACACGC+CGG | - | chr6_1:93923489-93923508 | None:intergenic | 35.0% |
| TCATTCCAGTATTTGCTTAG+AGG | + | chr6_1:93923684-93923703 | Msa0899110:CDS | 35.0% | |
| ACAAACCTCTAAGCAAATAC+TGG | - | chr6_1:93923692-93923711 | None:intergenic | 35.0% | |
| AATAACCAACTTCTGATCGA+AGG | - | chr6_1:93924317-93924336 | None:intergenic | 35.0% | |
| ! | GCATTAAGAGTTCTGATTGA+AGG | - | chr6_1:93924502-93924521 | None:intergenic | 35.0% |
| ! | ACAGACCTTTTGATAAGCTT+TGG | + | chr6_1:93924532-93924551 | Msa0899110:intron | 35.0% |
| GAACACCAAAGCTTATCAAA+AGG | - | chr6_1:93924540-93924559 | None:intergenic | 35.0% | |
| GCTAAGGTATGCATTTATCA+AGG | + | chr6_1:93924735-93924754 | Msa0899110:intron | 35.0% | |
| TATCACATGTCCATAAGCTT+AGG | + | chr6_1:93924793-93924812 | Msa0899110:intron | 35.0% | |
| !! | ACTGATAACTCAGCCATTTT+TGG | - | chr6_1:93924844-93924863 | None:intergenic | 35.0% |
| AATGGCTGAGTTATCAGTTA+TGG | + | chr6_1:93924846-93924865 | Msa0899110:intron | 35.0% | |
| ATGGCTGAGTTATCAGTTAT+GGG | + | chr6_1:93924847-93924866 | Msa0899110:intron | 35.0% | |
| ATTCAGTTAGCAATATCACG+TGG | + | chr6_1:93924884-93924903 | Msa0899110:intron | 35.0% | |
| CATGGGAGAACTTTACAATT+GGG | - | chr6_1:93925037-93925056 | None:intergenic | 35.0% | |
| AATTGTAAAGTTCTCCCATG+CGG | + | chr6_1:93925037-93925056 | Msa0899110:intron | 35.0% | |
| TAAACTAGAAAGGCTAGGTA+GGG | - | chr6_1:93925135-93925154 | None:intergenic | 35.0% | |
| ATAAACTAGAAAGGCTAGGT+AGG | - | chr6_1:93925136-93925155 | None:intergenic | 35.0% | |
| CACAATAAACTAGAAAGGCT+AGG | - | chr6_1:93925140-93925159 | None:intergenic | 35.0% | |
| CTTCTATAATCAAGACAACG+TGG | - | chr6_1:93925754-93925773 | None:intergenic | 35.0% | |
| ! | GTTGATTATAAGGGTATGCT+TGG | - | chr6_1:93925819-93925838 | None:intergenic | 35.0% |
| TTTAAAGAAAGGGGAACTTC+AGG | + | chr6_1:93926011-93926030 | Msa0899110:CDS | 35.0% | |
| ! | CAATCATGCTGATAGTGTAA+GGG | - | chr6_1:93926131-93926150 | None:intergenic | 35.0% |
| ! | TCAATCATGCTGATAGTGTA+AGG | - | chr6_1:93926132-93926151 | None:intergenic | 35.0% |
| !! | AGAAGCACTACCCTATAAAA+CGG | + | chr6_1:93926327-93926346 | Msa0899110:CDS | 35.0% |
| ! | TCAATGGACACCGTTTTATA+GGG | - | chr6_1:93926340-93926359 | None:intergenic | 35.0% |
| TATAAAACGGTGTCCATTGA+GGG | + | chr6_1:93926340-93926359 | Msa0899110:CDS | 35.0% | |
| !! | GCAACCGTTATTTCTAAAGA+AGG | + | chr6_1:93926425-93926444 | Msa0899110:CDS | 35.0% |
| ! | TGTGTTGCTCAGTTATTTCA+TGG | + | chr6_1:93926480-93926499 | Msa0899110:intron | 35.0% |
| CAGGGTTACAGAGAATAAAA+TGG | - | chr6_1:93926508-93926527 | None:intergenic | 35.0% | |
| ! | CATTTTATTCTCTGTAACCC+TGG | + | chr6_1:93926506-93926525 | Msa0899110:intron | 35.0% |
| !! | AACATGATCCGTTTTTGTGT+TGG | - | chr6_1:93926676-93926695 | None:intergenic | 35.0% |
| TGAACATCTGTGATAGTTAC+AGG | + | chr6_1:93926697-93926716 | Msa0899110:intron | 35.0% | |
| !!! | CAAAAGATGGCCCTTTTTTA+TGG | - | chr6_1:93926769-93926788 | None:intergenic | 35.0% |
| AAGTTTGAGAAGTTGTTCGT+TGG | + | chr6_1:93926856-93926875 | Msa0899110:intron | 35.0% | |
| ! | AATACAAGGCGCATTTTATC+TGG | + | chr6_1:93926895-93926914 | Msa0899110:intron | 35.0% |
| !! | TCCTTTTTAGGCAAGCTTTT+GGG | + | chr6_1:93926939-93926958 | Msa0899110:intron | 35.0% |
| !! | TTTTGGGTAGAATTTGGTCA+TGG | + | chr6_1:93926955-93926974 | Msa0899110:intron | 35.0% |
| TTTGGGTAGAATTTGGTCAT+GGG | + | chr6_1:93926956-93926975 | Msa0899110:intron | 35.0% | |
| !!! | TTGTTTTTTGTTGGCATGGT+CGG | + | chr6_1:93927128-93927147 | Msa0899110:intron | 35.0% |
| !!! | TCTGGTTTGCTTGTTTTAGT+TGG | + | chr6_1:93927171-93927190 | Msa0899110:intron | 35.0% |
| !!! | CTGGTTTGCTTGTTTTAGTT+GGG | + | chr6_1:93927172-93927191 | Msa0899110:intron | 35.0% |
| ! | CATGCATTTTCTGTAAGTTG+TGG | + | chr6_1:93927329-93927348 | Msa0899110:intron | 35.0% |
| TTCTTTCCATAAGTTGTGTC+TGG | + | chr6_1:93927489-93927508 | Msa0899110:intron | 35.0% | |
| GATATACCAGACACAACTTA+TGG | - | chr6_1:93927498-93927517 | None:intergenic | 35.0% | |
| TTTATCATTCAGCTCAAGCA+CGG | - | chr6_1:93927777-93927796 | None:intergenic | 35.0% | |
| CAAAAGCAAACAATTTCGTC+TGG | + | chr6_1:93927800-93927819 | Msa0899110:CDS | 35.0% | |
| TTGAAGATGCTAAGTTGTAC+AGG | + | chr6_1:93927885-93927904 | Msa0899110:CDS | 35.0% | |
| TGAAGATGCTAAGTTGTACA+GGG | + | chr6_1:93927886-93927905 | Msa0899110:CDS | 35.0% | |
| ! | ATACGTGTGCCTATTTTGTT+AGG | + | chr6_1:93928133-93928152 | Msa0899110:three_prime_UTR | 35.0% |
| CAAGACTCTCCTAACAAAAT+AGG | - | chr6_1:93928145-93928164 | None:intergenic | 35.0% | |
| ! | CTATTTTGTTAGGAGAGTCT+TGG | + | chr6_1:93928143-93928162 | Msa0899110:three_prime_UTR | 35.0% |
| ! | TCCAAGTATCCATGATTTTC+AGG | + | chr6_1:93928426-93928445 | Msa0899110:three_prime_UTR | 35.0% |
| TCCTGAAAATCATGGATACT+TGG | - | chr6_1:93928430-93928449 | None:intergenic | 35.0% | |
| CAGATAAGTCCTGAAAATCA+TGG | - | chr6_1:93928438-93928457 | None:intergenic | 35.0% | |
| !! | GTTAATCGCTTTTGACCTAC+TGG | - | chr6_1:93923383-93923402 | None:intergenic | 40.0% |
| GTTGTTCGTCTCAAGAAACA+CGG | + | chr6_1:93923413-93923432 | Msa0899110:CDS | 40.0% | |
| !!! | TCGGTGGTTTTGTAGTGAAA+AGG | + | chr6_1:93923561-93923580 | Msa0899110:intron | 40.0% |
| !! | TGAAGTGTTGCAGTCACATA+CGG | + | chr6_1:93923591-93923610 | Msa0899110:CDS | 40.0% |
| AGGTGTTCTTGCTAAGTCTA+AGG | + | chr6_1:93923633-93923652 | Msa0899110:CDS | 40.0% | |
| GTAGCTATGACACACTGATA+TGG | + | chr6_1:93923750-93923769 | Msa0899110:intron | 40.0% | |
| AACATATCAATGCCCCGTTT+AGG | - | chr6_1:93923961-93923980 | None:intergenic | 40.0% | |
| !! | GGGCATTGATATGTTGATAC+TGG | + | chr6_1:93923966-93923985 | Msa0899110:intron | 40.0% |
| ATAGCTATGAAACACTGTCG+TGG | + | chr6_1:93924447-93924466 | Msa0899110:intron | 40.0% | |
| ! | CAGTGTCCTAAAAGTGTAGT+TGG | - | chr6_1:93924473-93924492 | None:intergenic | 40.0% |
| !!! | CAACTACACTTTTAGGACAC+TGG | + | chr6_1:93924471-93924490 | Msa0899110:intron | 40.0% |
| ! | CACTCATGCTTAATTTGGGT+TGG | + | chr6_1:93924684-93924703 | Msa0899110:intron | 40.0% |
| ! | CAGTTATGGGCTATACATCA+AGG | + | chr6_1:93924860-93924879 | Msa0899110:intron | 40.0% |
| TATGGAACTGATGTGTAGCA+GGG | - | chr6_1:93924977-93924996 | None:intergenic | 40.0% | |
| TACACATCAGTTCCATAGGT+AGG | + | chr6_1:93924980-93924999 | Msa0899110:intron | 40.0% | |
| TACAATTGGGACTTAAGTCG+CGG | - | chr6_1:93925024-93925043 | None:intergenic | 40.0% | |
| GCATGGGAGAACTTTACAAT+TGG | - | chr6_1:93925038-93925057 | None:intergenic | 40.0% | |
| !! | TAGGTAGGGTAATGGAATCA+GGG | - | chr6_1:93925121-93925140 | None:intergenic | 40.0% |
| GATAGTCCTCTCTTTCTAAG+AGG | + | chr6_1:93925159-93925178 | Msa0899110:intron | 40.0% | |
| ATTTGCAGCTTGAGTGCTTA+AGG | - | chr6_1:93925339-93925358 | None:intergenic | 40.0% | |
| TTAAGCACTCAAGCTGCAAA+TGG | + | chr6_1:93925338-93925357 | Msa0899110:intron | 40.0% | |
| TAAGCACTCAAGCTGCAAAT+GGG | + | chr6_1:93925339-93925358 | Msa0899110:intron | 40.0% | |
| ACACTCACTTAGGGTACATA+TGG | - | chr6_1:93925621-93925640 | None:intergenic | 40.0% | |
| CTTCCAAACACACTCACTTA+GGG | - | chr6_1:93925630-93925649 | None:intergenic | 40.0% | |
| TCTTCCAAACACACTCACTT+AGG | - | chr6_1:93925631-93925650 | None:intergenic | 40.0% | |
| AATGCTGTCTAGTCAGTTCA+GGG | + | chr6_1:93926056-93926075 | Msa0899110:CDS | 40.0% | |
| ! | AGTCTTGTGCATTACAATGG+TGG | - | chr6_1:93926088-93926107 | None:intergenic | 40.0% |
| TGTTTGGATCAACAGCGAAA+TGG | - | chr6_1:93926173-93926192 | None:intergenic | 40.0% | |
| ! | CTCAATGGACACCGTTTTAT+AGG | - | chr6_1:93926341-93926360 | None:intergenic | 40.0% |
| CTATAAAACGGTGTCCATTG+AGG | + | chr6_1:93926339-93926358 | Msa0899110:CDS | 40.0% | |
| ! | CTCAGCTTTTCCAAAAGGAT+AGG | - | chr6_1:93926395-93926414 | None:intergenic | 40.0% |
| !! | CTTCTAGAACAGAAAACCCA+GGG | - | chr6_1:93926526-93926545 | None:intergenic | 40.0% |
| !! | CGCATTTTATCTGGTTTCTC+AGG | + | chr6_1:93926904-93926923 | Msa0899110:intron | 40.0% |
| !! | GTCCTTTTTAGGCAAGCTTT+TGG | + | chr6_1:93926938-93926957 | Msa0899110:intron | 40.0% |
| ACCCAAAAGCTTGCCTAAAA+AGG | - | chr6_1:93926943-93926962 | None:intergenic | 40.0% | |
| !! | GCAAGCTTTTGGGTAGAATT+TGG | + | chr6_1:93926949-93926968 | Msa0899110:intron | 40.0% |
| ! | GCAGGGGTTAATCTTTTGTT+CGG | + | chr6_1:93926978-93926997 | Msa0899110:intron | 40.0% |
| ! | CAGGGGTTAATCTTTTGTTC+GGG | + | chr6_1:93926979-93926998 | Msa0899110:intron | 40.0% |
| !!! | TTGTTTTAGTTGGGTCTGCT+AGG | + | chr6_1:93927181-93927200 | Msa0899110:intron | 40.0% |
| GCTAGGTTACACCTTGTATT+TGG | + | chr6_1:93927198-93927217 | Msa0899110:intron | 40.0% | |
| ! | ACCTTGTATTTGGAACCAAG+TGG | + | chr6_1:93927208-93927227 | Msa0899110:intron | 40.0% |
| ACCACTTGGTTCCAAATACA+AGG | - | chr6_1:93927212-93927231 | None:intergenic | 40.0% | |
| ! | CTGATTTCTAATTGGGTTGC+AGG | + | chr6_1:93927580-93927599 | Msa0899110:intron | 40.0% |
| ! | TGGGTTGCAGGTTTTTGAAT+TGG | + | chr6_1:93927592-93927611 | Msa0899110:intron | 40.0% |
| TGACAATCCTTATACAGACC+AGG | - | chr6_1:93927620-93927639 | None:intergenic | 40.0% | |
| TCTTGCTCACTCTCTTTATG+TGG | + | chr6_1:93927679-93927698 | Msa0899110:CDS | 40.0% | |
| CTCACTCTCTTTATGTGGAT+GGG | + | chr6_1:93927684-93927703 | Msa0899110:CDS | 40.0% | |
| TCACTCTCTTTATGTGGATG+GGG | + | chr6_1:93927685-93927704 | Msa0899110:CDS | 40.0% | |
| ! | TGTGGATTACAATGATCACG+AGG | + | chr6_1:93927715-93927734 | Msa0899110:CDS | 40.0% |
| ACGGATTCAGAAGTTCTTTG+GGG | - | chr6_1:93927758-93927777 | None:intergenic | 40.0% | |
| CACGGATTCAGAAGTTCTTT+GGG | - | chr6_1:93927759-93927778 | None:intergenic | 40.0% | |
| !!! | GTGTTGCACTTGTTTTGCTT+TGG | - | chr6_1:93927851-93927870 | None:intergenic | 40.0% |
| !! | ACTCTTCTTCAGATAGTGGA+GGG | - | chr6_1:93927967-93927986 | None:intergenic | 40.0% |
| TTACTGGTGACAGATTTGTG+CGG | + | chr6_1:93928230-93928249 | Msa0899110:three_prime_UTR | 40.0% | |
| ACCCTAACACCGTTCTTTCA+TGG | + | chr6_1:93923459-93923478 | Msa0899110:CDS | 45.0% | |
| ! | GCCATGAAAGAACGGTGTTA+GGG | - | chr6_1:93923463-93923482 | None:intergenic | 45.0% |
| AAGGATTTGAATGCGGCGTT+TGG | + | chr6_1:93923652-93923671 | Msa0899110:CDS | 45.0% | |
| ! | ACGCTTTCGATCAGAAGTGT+CGG | + | chr6_1:93923868-93923887 | Msa0899110:intron | 45.0% |
| !! | ATGAAGCACTGACACAGACA+CGG | + | chr6_1:93923932-93923951 | Msa0899110:intron | 45.0% |
| CACAGACACGGAAACCTAAA+CGG | + | chr6_1:93923944-93923963 | Msa0899110:intron | 45.0% | |
| ACAGACACGGAAACCTAAAC+GGG | + | chr6_1:93923945-93923964 | Msa0899110:intron | 45.0% | |
| ATGCCTTCAATCAGACGAGT+CGG | + | chr6_1:93924064-93924083 | Msa0899110:intron | 45.0% | |
| TGTCAGTGTCGTGTCTATGT+TGG | + | chr6_1:93924264-93924283 | Msa0899110:intron | 45.0% | |
| TATGTTGGACACTGACGTGT+AGG | + | chr6_1:93924279-93924298 | Msa0899110:intron | 45.0% | |
| ACACTCCTTCGATCAGAAGT+TGG | + | chr6_1:93924309-93924328 | Msa0899110:intron | 45.0% | |
| ! | TCGTGGCCAACTACACTTTT+AGG | + | chr6_1:93924464-93924483 | Msa0899110:intron | 45.0% |
| ! | CACGTGGCCTTTTCAACTAT+TGG | + | chr6_1:93924900-93924919 | Msa0899110:intron | 45.0% |
| ! | TGTTGGATAAGGTTGATCGC+AGG | - | chr6_1:93924948-93924967 | None:intergenic | 45.0% |
| GCGATCAACCTTATCCAACA+AGG | + | chr6_1:93924948-93924967 | Msa0899110:intron | 45.0% | |
| CTATGGAACTGATGTGTAGC+AGG | - | chr6_1:93924978-93924997 | None:intergenic | 45.0% | |
| CTGCTACACATCAGTTCCAT+AGG | + | chr6_1:93924976-93924995 | Msa0899110:intron | 45.0% | |
| !! | AGGTAGGGTAATGGAATCAG+GGG | - | chr6_1:93925120-93925139 | None:intergenic | 45.0% |
| !! | CTAGGTAGGGTAATGGAATC+AGG | - | chr6_1:93925122-93925141 | None:intergenic | 45.0% |
| AGAAAGGCTAGGTAGGGTAA+TGG | - | chr6_1:93925129-93925148 | None:intergenic | 45.0% | |
| GTACCCTAAGTGAGTGTGTT+TGG | + | chr6_1:93925624-93925643 | Msa0899110:intron | 45.0% | |
| ! | TAAGGGTATGCTTGGGACAT+GGG | - | chr6_1:93925811-93925830 | None:intergenic | 45.0% |
| ! | ATAAGGGTATGCTTGGGACA+TGG | - | chr6_1:93925812-93925831 | None:intergenic | 45.0% |
| !! | TTCAGGTTGCTGGTAAAGAG+AGG | + | chr6_1:93926028-93926047 | Msa0899110:CDS | 45.0% |
| ! | TCAGGTTGCTGGTAAAGAGA+GGG | + | chr6_1:93926029-93926048 | Msa0899110:CDS | 45.0% |
| CAATGCTGTCTAGTCAGTTC+AGG | + | chr6_1:93926055-93926074 | Msa0899110:CDS | 45.0% | |
| CATGATTGAACGCCTCATGA+GGG | + | chr6_1:93926143-93926162 | Msa0899110:CDS | 45.0% | |
| CGAAATGGATATCCCTCATG+AGG | - | chr6_1:93926158-93926177 | None:intergenic | 45.0% | |
| ACAAGATACCTGCTTCTTGG+AGG | - | chr6_1:93926199-93926218 | None:intergenic | 45.0% | |
| AGGACAAGATACCTGCTTCT+TGG | - | chr6_1:93926202-93926221 | None:intergenic | 45.0% | |
| GAAAGTCGTATTACAGGCTC+TGG | + | chr6_1:93926286-93926305 | Msa0899110:intron | 45.0% | |
| !!! | GGAGGAAGTACCTATCCTTT+TGG | + | chr6_1:93926382-93926401 | Msa0899110:CDS | 45.0% |
| ! | ACTCGCTCAGCTTTTCCAAA+AGG | - | chr6_1:93926400-93926419 | None:intergenic | 45.0% |
| !! | TTTTGGAAAAGCTGAGCGAG+TGG | + | chr6_1:93926399-93926418 | Msa0899110:CDS | 45.0% |
| !! | GCTTCTAGAACAGAAAACCC+AGG | - | chr6_1:93926527-93926546 | None:intergenic | 45.0% |
| ! | CAAGCCTTATGCCACTAAGT+GGG | + | chr6_1:93926581-93926600 | Msa0899110:intron | 45.0% |
| ! | AAGCCTTATGCCACTAAGTG+GGG | + | chr6_1:93926582-93926601 | Msa0899110:intron | 45.0% |
| !!! | GATGGCCCTTTTTTATGGGT+TGG | - | chr6_1:93926764-93926783 | None:intergenic | 45.0% |
| GTAGAATTTGGTCATGGGCA+GGG | + | chr6_1:93926961-93926980 | Msa0899110:intron | 45.0% | |
| TAGAATTTGGTCATGGGCAG+GGG | + | chr6_1:93926962-93926981 | Msa0899110:intron | 45.0% | |
| ! | CGGGTGCAGTAGTTTTTCTT+AGG | + | chr6_1:93926998-93927017 | Msa0899110:intron | 45.0% |
| AAAACTCGGTATTCGGTCCA+AGG | + | chr6_1:93927043-93927062 | Msa0899110:intron | 45.0% | |
| !! | ATTGGACCCCTTGGATTAGT+CGG | - | chr6_1:93927070-93927089 | None:intergenic | 45.0% |
| ACAGCGCCCAAATGAGTATT+TGG | - | chr6_1:93927285-93927304 | None:intergenic | 45.0% | |
| ! | CAGGTTTTTGAATTGGAGCC+TGG | + | chr6_1:93927599-93927618 | Msa0899110:intron | 45.0% |
| ATTGGAGCCTGGTCTGTATA+AGG | + | chr6_1:93927610-93927629 | Msa0899110:CDS | 45.0% | |
| GCTCACTCTCTTTATGTGGA+TGG | + | chr6_1:93927683-93927702 | Msa0899110:CDS | 45.0% | |
| !! | TCAGAAGTTCTTTGGGGCAA+TGG | - | chr6_1:93927752-93927771 | None:intergenic | 45.0% |
| GCACGGATTCAGAAGTTCTT+TGG | - | chr6_1:93927760-93927779 | None:intergenic | 45.0% | |
| TTTGGTTGTTGTCCCTCAGT+AGG | - | chr6_1:93927833-93927852 | None:intergenic | 45.0% | |
| ! | CACTCTTCTTCAGATAGTGG+AGG | - | chr6_1:93927968-93927987 | None:intergenic | 45.0% |
| GTGCACTCTTCTTCAGATAG+TGG | - | chr6_1:93927971-93927990 | None:intergenic | 45.0% | |
| ! | AGAAGAGTGCACAGCAGATA+TGG | + | chr6_1:93927979-93927998 | Msa0899110:CDS | 45.0% |
| TTGCTCGTGAACAAAGAGCA+TGG | - | chr6_1:93928379-93928398 | None:intergenic | 45.0% | |
| CGCCATGAAAGAACGGTGTT+AGG | - | chr6_1:93923464-93923483 | None:intergenic | 50.0% | |
| ACCGTTCTTTCATGGCGTTC+CGG | + | chr6_1:93923467-93923486 | Msa0899110:CDS | 50.0% | |
| ! | TTCTGATCGAAAGCGTGGTC+AGG | - | chr6_1:93923864-93923883 | None:intergenic | 50.0% |
| GACACTTCTGATCGAAAGCG+TGG | - | chr6_1:93923869-93923888 | None:intergenic | 50.0% | |
| CAGACACGGAAACCTAAACG+GGG | + | chr6_1:93923946-93923965 | Msa0899110:intron | 50.0% | |
| TGTCGCACACTAGCATGTGT+AGG | + | chr6_1:93924032-93924051 | Msa0899110:intron | 50.0% | |
| ! | CGTCTGATTGAAGGCATGTC+TGG | - | chr6_1:93924061-93924080 | None:intergenic | 50.0% |
| !! | CTTCTGATCGAAGGAGTGTC+CGG | - | chr6_1:93924308-93924327 | None:intergenic | 50.0% |
| TCGCAGGCAGCTAATGAACT+AGG | - | chr6_1:93924932-93924951 | None:intergenic | 50.0% | |
| ! | CAGGGCATCCTTGTTGGATA+AGG | - | chr6_1:93924959-93924978 | None:intergenic | 50.0% |
| CACTCAAGCTGCAAATGGGT+TGG | + | chr6_1:93925343-93925362 | Msa0899110:intron | 50.0% | |
| !! | AAAGGGGAACTTCAGGTTGC+TGG | + | chr6_1:93926018-93926037 | Msa0899110:CDS | 50.0% |
| !! | AGTGTAAGGGCGCTTAGTCT+CGG | - | chr6_1:93926118-93926137 | None:intergenic | 50.0% |
| GCATGATTGAACGCCTCATG+AGG | + | chr6_1:93926142-93926161 | Msa0899110:CDS | 50.0% | |
| !! | TGCTTCTTGGAGGTGCTGTT+TGG | - | chr6_1:93926189-93926208 | None:intergenic | 50.0% |
| AAACAGCACCTCCAAGAAGC+AGG | + | chr6_1:93926188-93926207 | Msa0899110:CDS | 50.0% | |
| !! | ACAGGCTCTGGAGTTGATTC+AGG | + | chr6_1:93926298-93926317 | Msa0899110:intron | 50.0% |
| GATAGGTACTTCCTCCTCAG+GGG | - | chr6_1:93926378-93926397 | None:intergenic | 50.0% | |
| GGATAGGTACTTCCTCCTCA+GGG | - | chr6_1:93926379-93926398 | None:intergenic | 50.0% | |
| AGGATAGGTACTTCCTCCTC+AGG | - | chr6_1:93926380-93926399 | None:intergenic | 50.0% | |
| CCACTTAGTGGCATAAGGCT+TGG | - | chr6_1:93926583-93926602 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATGCCACTAAG+TGG | + | chr6_1:93926580-93926599 | Msa0899110:intron | 50.0% |
| CAACCCCACTTAGTGGCATA+AGG | - | chr6_1:93926588-93926607 | None:intergenic | 50.0% | |
| TTAGTGGCAACCCCACTTAG+TGG | - | chr6_1:93926595-93926614 | None:intergenic | 50.0% | |
| TAAGTGGGGTTGCCACTAAG+TGG | + | chr6_1:93926596-93926615 | Msa0899110:intron | 50.0% | |
| AAGTGGGGTTGCCACTAAGT+GGG | + | chr6_1:93926597-93926616 | Msa0899110:intron | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | - | chr6_1:93926611-93926630 | None:intergenic | 50.0% | |
| GGTAGAATTTGGTCATGGGC+AGG | + | chr6_1:93926960-93926979 | Msa0899110:intron | 50.0% | |
| TCCAAGGACCGACTAATCCA+AGG | + | chr6_1:93927059-93927078 | Msa0899110:intron | 50.0% | |
| CCAAGGACCGACTAATCCAA+GGG | + | chr6_1:93927060-93927079 | Msa0899110:intron | 50.0% | |
| CAAGGACCGACTAATCCAAG+GGG | + | chr6_1:93927061-93927080 | Msa0899110:intron | 50.0% | |
| TGTGGATGGGGATACTCATG+TGG | + | chr6_1:93927697-93927716 | Msa0899110:CDS | 50.0% | |
| TCTGGACCTAAGCCTACTGA+GGG | + | chr6_1:93927818-93927837 | Msa0899110:CDS | 50.0% | |
| TGTTGTCCCTCAGTAGGCTT+AGG | - | chr6_1:93927827-93927846 | None:intergenic | 50.0% | |
| TGTGCGGTTCTGCTTTCTCT+TGG | + | chr6_1:93928246-93928265 | Msa0899110:three_prime_UTR | 50.0% | |
| GGTTCTGCTTTCTCTTGGTC+TGG | + | chr6_1:93928251-93928270 | Msa0899110:three_prime_UTR | 50.0% | |
| CATGGATACTTGGATCCCCT+AGG | - | chr6_1:93928420-93928439 | None:intergenic | 50.0% | |
| GCCGGAACGCCATGAAAGAA+CGG | - | chr6_1:93923471-93923490 | None:intergenic | 55.0% | |
| !! | GCACCGACTCGTCTGATTGA+AGG | - | chr6_1:93924070-93924089 | None:intergenic | 55.0% |
| TCAATCAGACGAGTCGGTGC+TGG | + | chr6_1:93924070-93924089 | Msa0899110:intron | 55.0% | |
| GACACTGACGTGTAGGACAC+CGG | + | chr6_1:93924286-93924305 | Msa0899110:intron | 55.0% | |
| ! | GTGTAGCAGGGCATCCTTGT+TGG | - | chr6_1:93924965-93924984 | None:intergenic | 55.0% |
| GTTCTCCCATGCGGATGCAT+TGG | + | chr6_1:93925046-93925065 | Msa0899110:intron | 55.0% | |
| CTTCGCCAATGCATCCGCAT+GGG | - | chr6_1:93925054-93925073 | None:intergenic | 55.0% | |
| TCTTCGCCAATGCATCCGCA+TGG | - | chr6_1:93925055-93925074 | None:intergenic | 55.0% | |
| ! | GCGGATGCATTGGCGAAGAT+TGG | + | chr6_1:93925056-93925075 | Msa0899110:intron | 55.0% |
| !! | GTGTAAGGGCGCTTAGTCTC+GGG | - | chr6_1:93926117-93926136 | None:intergenic | 55.0% |
| GGAAAAGCTGAGCGAGTGGA+AGG | + | chr6_1:93926403-93926422 | Msa0899110:CDS | 55.0% | |
| AGTGGGGTTGCCACTAAGTG+GGG | + | chr6_1:93926598-93926617 | Msa0899110:intron | 55.0% | |
| !! | CCCTTGGATTAGTCGGTCCT+TGG | - | chr6_1:93927063-93927082 | None:intergenic | 55.0% |
| !! | GTTCTTTGGGGCAATGGTGC+AGG | - | chr6_1:93927746-93927765 | None:intergenic | 55.0% |
| GTCTGGACCTAAGCCTACTG+AGG | + | chr6_1:93927817-93927836 | Msa0899110:CDS | 55.0% | |
| GGGAACACCACAAGAGTGAG+TGG | + | chr6_1:93927906-93927925 | Msa0899110:CDS | 55.0% | |
| ! | GCTTGTGCCACTCACTCTTG+TGG | - | chr6_1:93927916-93927935 | None:intergenic | 55.0% |
| GCTAGTGTGCGACACACACG+TGG | - | chr6_1:93924026-93924045 | None:intergenic | 60.0% | |
| !! | TCAGACGAGTCGGTGCTGGA+AGG | + | chr6_1:93924074-93924093 | Msa0899110:intron | 60.0% |
| GGGTTGCCACTAAGTGGGGT+TGG | + | chr6_1:93926602-93926621 | Msa0899110:intron | 60.0% | |
| CCAATCCCACCACCCACATG+CGG | + | chr6_1:93927085-93927104 | Msa0899110:intron | 60.0% | |
| CAATCCCACCACCCACATGC+GGG | + | chr6_1:93927086-93927105 | Msa0899110:intron | 60.0% | |
| AATCCCACCACCCACATGCG+GGG | + | chr6_1:93927087-93927106 | Msa0899110:intron | 60.0% | |
| GCAGCAGCGCGTACCCTCAA+TGG | - | chr6_1:93926356-93926375 | None:intergenic | 65.0% | |
| !! | GGTGGTGGGATTGGACCCCT+TGG | - | chr6_1:93927079-93927098 | None:intergenic | 65.0% |
| !! | CCGCATGTGGGTGGTGGGAT+TGG | - | chr6_1:93927088-93927107 | None:intergenic | 65.0% |
| ATCCCACCACCCACATGCGG+GGG | + | chr6_1:93927088-93927107 | Msa0899110:intron | 65.0% | |
| TCCCACCACCCACATGCGGG+GGG | + | chr6_1:93927089-93927108 | Msa0899110:intron | 70.0% | |
| ACCCCCCGCATGTGGGTGGT+GGG | - | chr6_1:93927093-93927112 | None:intergenic | 70.0% | |
| ACCACCCACATGCGGGGGGT+GGG | + | chr6_1:93927093-93927112 | Msa0899110:intron | 70.0% | |
| AACCCCCACCCCCCGCATGT+GGG | - | chr6_1:93927100-93927119 | None:intergenic | 70.0% | |
| GGTACGCGCTGCTGCCCCTG+AGG | + | chr6_1:93926361-93926380 | Msa0899110:CDS | 75.0% | |
| ACGCGCTGCTGCCCCTGAGG+AGG | + | chr6_1:93926364-93926383 | Msa0899110:CDS | 75.0% | |
| CACCCCCCGCATGTGGGTGG+TGG | - | chr6_1:93927094-93927113 | None:intergenic | 75.0% | |
| CACCACCCACATGCGGGGGG+TGG | + | chr6_1:93927092-93927111 | Msa0899110:intron | 75.0% | |
| CCACCCACATGCGGGGGGTG+GGG | + | chr6_1:93927094-93927113 | Msa0899110:intron | 75.0% | |
| CACCCACATGCGGGGGGTGG+GGG | + | chr6_1:93927095-93927114 | Msa0899110:intron | 75.0% | |
| CAACCCCCACCCCCCGCATG+TGG | - | chr6_1:93927101-93927120 | None:intergenic | 75.0% | |
| ! | CCCCACCCCCCGCATGTGGG+TGG | - | chr6_1:93927097-93927116 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 93923155 | 93928527 | 93923155 | ID=Msa0899110;Name=Msa0899110 |
| chr6_1 | mRNA | 93923155 | 93928527 | 93923155 | ID=Msa0899110-mRNA-1;Parent=Msa0899110;Name=Msa0899110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=104|1|1|1|0.8|0.66|6|482|358 |
| chr6_1 | exon | 93923155 | 93923277 | 93923155 | ID=Msa0899110-mRNA-1:exon:15961;Parent=Msa0899110-mRNA-1 |
| chr6_1 | exon | 93923378 | 93923492 | 93923378 | ID=Msa0899110-mRNA-1:exon:15962;Parent=Msa0899110-mRNA-1 |
| chr6_1 | exon | 93923576 | 93923705 | 93923576 | ID=Msa0899110-mRNA-1:exon:15963;Parent=Msa0899110-mRNA-1 |
| chr6_1 | exon | 93926009 | 93926209 | 93926009 | ID=Msa0899110-mRNA-1:exon:15964;Parent=Msa0899110-mRNA-1 |
| chr6_1 | exon | 93926302 | 93926469 | 93926302 | ID=Msa0899110-mRNA-1:exon:15965;Parent=Msa0899110-mRNA-1 |
| chr6_1 | exon | 93927602 | 93928527 | 93927602 | ID=Msa0899110-mRNA-1:exon:15966;Parent=Msa0899110-mRNA-1 |
| chr6_1 | five_prime_UTR | 93923155 | 93923258 | 93923155 | ID=Msa0899110-mRNA-1:five_prime_utr;Parent=Msa0899110-mRNA-1 |
| chr6_1 | CDS | 93923259 | 93923277 | 93923259 | ID=Msa0899110-mRNA-1:cds;Parent=Msa0899110-mRNA-1 |
| chr6_1 | CDS | 93923378 | 93923492 | 93923378 | ID=Msa0899110-mRNA-1:cds;Parent=Msa0899110-mRNA-1 |
| chr6_1 | CDS | 93923576 | 93923705 | 93923576 | ID=Msa0899110-mRNA-1:cds;Parent=Msa0899110-mRNA-1 |
| chr6_1 | CDS | 93926009 | 93926209 | 93926009 | ID=Msa0899110-mRNA-1:cds;Parent=Msa0899110-mRNA-1 |
| chr6_1 | CDS | 93926302 | 93926469 | 93926302 | ID=Msa0899110-mRNA-1:cds;Parent=Msa0899110-mRNA-1 |
| chr6_1 | CDS | 93927602 | 93928045 | 93927602 | ID=Msa0899110-mRNA-1:cds;Parent=Msa0899110-mRNA-1 |
| chr6_1 | three_prime_UTR | 93928046 | 93928527 | 93928046 | ID=Msa0899110-mRNA-1:three_prime_utr;Parent=Msa0899110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
