Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964600 | sp|P70122|SBDS_MOUSE | 47.154 | 246 | 118 | 3 | 4 | 238 | 2 | 246 | 1.29e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964600 | A0A072UBA1 | 96.089 | 358 | 5 | 1 | 1 | 349 | 1 | 358 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0964600 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899110 | Msa0964600 | 0.934672 | 2.809210e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964600 | MtrunA17_Chr6g0485001 | 96.089 | 358 | 5 | 1 | 1 | 349 | 1 | 358 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964600 | AT1G43860.1 | 61.186 | 371 | 121 | 7 | 1 | 349 | 1 | 370 | 3.74e-159 | 451 |
| Msa0964600 | AT1G43860.2 | 55.942 | 345 | 120 | 8 | 27 | 349 | 1 | 335 | 7.96e-128 | 370 |
Find 90 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATGTAATTTCAATTTA+AGG | 0.072912 | 6_3:+91389941 | None:intergenic |
| GCACGGATTCAGAAGTTCTT+TGG | 0.262575 | 6_3:+91390382 | None:intergenic |
| CATCGAACATATTTCATTAC+TGG | 0.266920 | 6_3:-91389925 | Msa0964600:three_prime_UTR |
| CACGGATTCAGAAGTTCTTT+GGG | 0.284543 | 6_3:+91390383 | None:intergenic |
| ACAGGCTCTGGAGTTGATTC+AGG | 0.285367 | 6_3:-91391840 | Msa0964600:intron |
| CAAGACTCTCCTAACAAAAT+AGG | 0.298300 | 6_3:+91389997 | None:intergenic |
| ATTGGAGCCTGGTCTGTATA+AGG | 0.329038 | 6_3:-91390529 | Msa0964600:CDS |
| TGCTTCTTGGAGGTGCTGTT+TGG | 0.331667 | 6_3:+91391952 | None:intergenic |
| CAATGCTGTCTAGTCAGTTC+AGG | 0.331986 | 6_3:-91392083 | Msa0964600:CDS |
| AGGTGTTCTTGCTAAGTCTA+AGG | 0.333707 | 6_3:-91394512 | Msa0964600:CDS |
| CTTCTATTCTTAAGTTTCCT+AGG | 0.338536 | 6_3:-91389739 | Msa0964600:three_prime_UTR |
| AAAAGTGTTTGAGATGTTAC+TGG | 0.342230 | 6_3:-91390057 | Msa0964600:three_prime_UTR |
| ACCCTAACACCGTTCTTTCA+TGG | 0.342417 | 6_3:-91394687 | Msa0964600:CDS |
| CGCCATGAAAGAACGGTGTT+AGG | 0.353355 | 6_3:+91394685 | None:intergenic |
| GGAGGAAGTACCTATCCTTT+TGG | 0.369437 | 6_3:-91391756 | Msa0964600:CDS |
| CTCACTCTCTTTATGTGGAT+GGG | 0.371029 | 6_3:-91390455 | Msa0964600:CDS |
| TTTAAAGAAAGGGGAACTTC+AGG | 0.373529 | 6_3:-91392127 | Msa0964600:intron |
| AGAAGAGTGCACAGCAGATA+TGG | 0.383434 | 6_3:-91390160 | Msa0964600:CDS |
| TACCACAATGTCTCGTTCAT+TGG | 0.388509 | 6_3:-91394794 | Msa0964600:exon |
| TGAATCAAAATCTGATTTGA+AGG | 0.396855 | 6_3:-91390130 | Msa0964600:CDS |
| GCTCACTCTCTTTATGTGGA+TGG | 0.397818 | 6_3:-91390456 | Msa0964600:CDS |
| TGTGCGGTTCTGCTTTCTCT+TGG | 0.398110 | 6_3:-91389893 | Msa0964600:three_prime_UTR |
| AAAGGGGAACTTCAGGTTGC+TGG | 0.407398 | 6_3:-91392120 | Msa0964600:intron |
| ACCGTTCTTTCATGGCGTTC+CGG | 0.423741 | 6_3:-91394679 | Msa0964600:CDS |
| AGGATAGGTACTTCCTCCTC+AGG | 0.427749 | 6_3:+91391761 | None:intergenic |
| TGTTGTCCCTCAGTAGGCTT+AGG | 0.430168 | 6_3:+91390315 | None:intergenic |
| TTGAAGATGCTAAGTTGTAC+AGG | 0.433138 | 6_3:-91390254 | Msa0964600:CDS |
| TGTCCCTTCTTTAGAAATAA+CGG | 0.436135 | 6_3:+91391709 | None:intergenic |
| TCTTGCTCACTCTCTTTATG+TGG | 0.440257 | 6_3:-91390460 | Msa0964600:CDS |
| TCAATCATGCTGATAGTGTA+AGG | 0.442974 | 6_3:+91392009 | None:intergenic |
| CAAAAGCAAACAATTTCGTC+TGG | 0.443371 | 6_3:-91390339 | Msa0964600:CDS |
| GTTCTTTGGGGCAATGGTGC+AGG | 0.443834 | 6_3:+91390396 | None:intergenic |
| AAGGATTTGAATGCAGCGTT+TGG | 0.444823 | 6_3:-91394493 | Msa0964600:CDS |
| TCCTGAAAATCATGGATACT+TGG | 0.447974 | 6_3:+91389712 | None:intergenic |
| TCAGAAGTTCTTTGGGGCAA+TGG | 0.449572 | 6_3:+91390390 | None:intergenic |
| AGGACAAGATACCTGCTTCT+TGG | 0.450486 | 6_3:+91391939 | None:intergenic |
| GCAACCGTTATTTCTAAAGA+AGG | 0.452079 | 6_3:-91391713 | Msa0964600:CDS |
| TTCTATTCTTAAGTTTCCTA+GGG | 0.456608 | 6_3:-91389738 | Msa0964600:three_prime_UTR |
| GCAGCAGCGCGTACCCTCAA+TGG | 0.474471 | 6_3:+91391785 | None:intergenic |
| CAGATAAGTCCTGAAAATCA+TGG | 0.488086 | 6_3:+91389704 | None:intergenic |
| GTGCACTCTTCTTCAGATAG+TGG | 0.490526 | 6_3:+91390171 | None:intergenic |
| TTTGGTTGTTGTCCCTCAGT+AGG | 0.497330 | 6_3:+91390309 | None:intergenic |
| AGTGTAAGGGCGCTTAGTCT+CGG | 0.500797 | 6_3:+91392023 | None:intergenic |
| TCACTCTCTTTATGTGGATG+GGG | 0.502380 | 6_3:-91390454 | Msa0964600:CDS |
| GCCATGAAAGAACGGTGTTA+GGG | 0.509375 | 6_3:+91394686 | None:intergenic |
| ACGCGCTGCTGCCCCTGAGG+AGG | 0.512519 | 6_3:-91391774 | Msa0964600:CDS |
| ACAAGATACCTGCTTCTTGG+AGG | 0.519410 | 6_3:+91391942 | None:intergenic |
| GTGTAAGGGCGCTTAGTCTC+GGG | 0.522577 | 6_3:+91392024 | None:intergenic |
| CTATAAAACGGTGTCCATTG+AGG | 0.535043 | 6_3:-91391799 | Msa0964600:CDS |
| AAACAGCACCTCCAAGAAGC+AGG | 0.539561 | 6_3:-91391950 | Msa0964600:intron |
| TGTTTGGATCAACAGCGAAA+TGG | 0.541879 | 6_3:+91391968 | None:intergenic |
| TATAAAACGGTGTCCATTGA+GGG | 0.542061 | 6_3:-91391798 | Msa0964600:CDS |
| TGAAGTGTTGCAGTCACATA+CGG | 0.542659 | 6_3:-91394554 | Msa0964600:CDS |
| TTCATACAAAGTAACAGAAG+TGG | 0.552956 | 6_3:+91389621 | None:intergenic |
| AGAAGCACTACCCTATAAAA+CGG | 0.553845 | 6_3:-91391811 | Msa0964600:CDS |
| AAAAGTCTTGTGCATTACAA+TGG | 0.555238 | 6_3:+91392050 | None:intergenic |
| AATGCTGTCTAGTCAGTTCA+GGG | 0.557997 | 6_3:-91392082 | Msa0964600:CDS |
| GCTTGTGCCACTCACTCTTG+TGG | 0.558268 | 6_3:+91390226 | None:intergenic |
| CGTTCATTGGTTCAACCAGT+AGG | 0.559659 | 6_3:-91394781 | Msa0964600:CDS |
| CAACCGTTATTTCTAAAGAA+GGG | 0.568663 | 6_3:-91391712 | Msa0964600:CDS |
| GCATGATTGAACGCCTCATG+AGG | 0.570502 | 6_3:-91391996 | Msa0964600:CDS |
| GGAAAAGCTGAGCGAGTGGA+AGG | 0.571341 | 6_3:-91391735 | Msa0964600:CDS |
| TTTATCATTCAGCTCAAGCA+CGG | 0.574553 | 6_3:+91390365 | None:intergenic |
| TTTGTTATGAATAAGATGCA+TGG | 0.575041 | 6_3:-91390495 | Msa0964600:CDS |
| CACTCTTCTTCAGATAGTGG+AGG | 0.576466 | 6_3:+91390174 | None:intergenic |
| GGATAGGTACTTCCTCCTCA+GGG | 0.584943 | 6_3:+91391762 | None:intergenic |
| GCCGGAACGCCATGAAAGAA+CGG | 0.596078 | 6_3:+91394678 | None:intergenic |
| GTTTATACGAATGTTTCGAA+AGG | 0.596420 | 6_3:-91394532 | Msa0964600:CDS |
| TTCAGGTTGCTGGTAAAGAG+AGG | 0.599142 | 6_3:-91392110 | Msa0964600:CDS |
| CAATCATGCTGATAGTGTAA+GGG | 0.615053 | 6_3:+91392010 | None:intergenic |
| TGAAGATGCTAAGTTGTACA+GGG | 0.615157 | 6_3:-91390253 | Msa0964600:CDS |
| AGTCTTGTGCATTACAATGG+TGG | 0.616545 | 6_3:+91392053 | None:intergenic |
| CATGGATACTTGGATCCCCT+AGG | 0.627204 | 6_3:+91389722 | None:intergenic |
| CGAAATGGATATCCCTCATG+AGG | 0.633330 | 6_3:+91391983 | None:intergenic |
| TCAGGTTGCTGGTAAAGAGA+GGG | 0.634218 | 6_3:-91392109 | Msa0964600:CDS |
| ACGGATTCAGAAGTTCTTTG+GGG | 0.636915 | 6_3:+91390384 | None:intergenic |
| TGACAATCCTTATACAGACC+AGG | 0.646899 | 6_3:+91390522 | None:intergenic |
| GGGAACACCACAAGAGTGAG+TGG | 0.646994 | 6_3:-91390233 | Msa0964600:CDS |
| ACAATATGAAGCGTAAAACA+AGG | 0.648014 | 6_3:-91390203 | Msa0964600:CDS |
| TGTGGATGGGGATACTCATG+TGG | 0.649096 | 6_3:-91390442 | Msa0964600:CDS |
| ACTCTTCTTCAGATAGTGGA+GGG | 0.651530 | 6_3:+91390175 | None:intergenic |
| AACCAATGAACGAGACATTG+TGG | 0.651646 | 6_3:+91394792 | None:intergenic |
| CATGATTGAACGCCTCATGA+GGG | 0.655277 | 6_3:-91391995 | Msa0964600:CDS |
| GTCTGGACCTAAGCCTACTG+AGG | 0.658281 | 6_3:-91390322 | Msa0964600:CDS |
| TCTGGACCTAAGCCTACTGA+GGG | 0.681737 | 6_3:-91390321 | Msa0964600:CDS |
| TCTATTCTTAAGTTTCCTAG+GGG | 0.691891 | 6_3:-91389737 | Msa0964600:three_prime_UTR |
| GTTGTTCGTCTCAAGAAACA+CGG | 0.697669 | 6_3:-91394733 | Msa0964600:CDS |
| GATAGGTACTTCCTCCTCAG+GGG | 0.704780 | 6_3:+91391763 | None:intergenic |
| TTACTGGTGACAGATTTGTG+CGG | 0.714129 | 6_3:-91389909 | Msa0964600:three_prime_UTR |
| TGTGGATTACAATGATCACG+AGG | 0.775410 | 6_3:-91390424 | Msa0964600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATCACAAAAAATTA+GGG | + | chr6_3:91389888-91389907 | None:intergenic | 10.0% |
| !! | AAGAATTATAATTAATAACA+GGG | + | chr6_3:91393857-91393876 | None:intergenic | 10.0% |
| !! | AAAGAATTATAATTAATAAC+AGG | + | chr6_3:91393858-91393877 | None:intergenic | 10.0% |
| !! | CATAATAATCACAAAAAATT+AGG | + | chr6_3:91389889-91389908 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTGATGAATAAAA+GGG | + | chr6_3:91391597-91391616 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTTGATGAATAAA+AGG | + | chr6_3:91391598-91391617 | None:intergenic | 15.0% |
| !! | AAATAATGTTTATTCAAAGT+TGG | - | chr6_3:91391657-91391676 | Msa0964600:intron | 15.0% |
| !! | AAAAAAAAGAAAAAAGCTTA+TGG | + | chr6_3:91391826-91391845 | None:intergenic | 15.0% |
| !!! | ATAAGCTTTTTTCTTTTTTT+TGG | - | chr6_3:91391825-91391844 | Msa0964600:CDS | 15.0% |
| !!! | TTTTTTGGAATAAGTTATTT+AGG | - | chr6_3:91391840-91391859 | Msa0964600:intron | 15.0% |
| !! | AGAATATTTACAACTTATTT+GGG | - | chr6_3:91392034-91392053 | Msa0964600:CDS | 15.0% |
| !!! | AAGATATAAGTTGATTATAA+GGG | + | chr6_3:91392212-91392231 | None:intergenic | 15.0% |
| !! | AAAATAAAACTAGAAATACA+AGG | - | chr6_3:91393265-91393284 | Msa0964600:intron | 15.0% |
| !! | ATTTCAAATATTATTACTGT+TGG | - | chr6_3:91393830-91393849 | Msa0964600:intron | 15.0% |
| !! | AGAATTATAATTAATAACAG+GGG | + | chr6_3:91393856-91393875 | None:intergenic | 15.0% |
| !!! | ATAACAACTTTTAATCATTA+AGG | - | chr6_3:91394845-91394864 | Msa0964600:five_prime_UTR | 15.0% |
| !!! | TTTTGTTGATTTCTTTGTTT+CGG | + | chr6_3:91389669-91389688 | None:intergenic | 20.0% |
| !!! | GATTAATTGAGTTAATTTGA+TGG | - | chr6_3:91389910-91389929 | Msa0964600:three_prime_UTR | 20.0% |
| !!! | AGTTAATTTGATGGATTAAT+CGG | - | chr6_3:91389919-91389938 | Msa0964600:three_prime_UTR | 20.0% |
| !!! | ATTGACTTTTTAATAAGCTT+TGG | - | chr6_3:91390498-91390517 | Msa0964600:CDS | 20.0% |
| !! | TTTACATAATTTATGCTTAG+AGG | - | chr6_3:91390719-91390738 | Msa0964600:intron | 20.0% |
| !!! | AGGTTTTTAGTTTCTATTTT+GGG | - | chr6_3:91391563-91391582 | Msa0964600:intron | 20.0% |
| !!! | TCTTTTTTGATGAATAAAAG+GGG | + | chr6_3:91391596-91391615 | None:intergenic | 20.0% |
| !! | GAGAATATTTACAACTTATT+TGG | - | chr6_3:91392033-91392052 | Msa0964600:CDS | 20.0% |
| !!! | CAAGATATAAGTTGATTATA+AGG | + | chr6_3:91392213-91392232 | None:intergenic | 20.0% |
| !! | CTAATTATTATGCATAAACT+GGG | + | chr6_3:91392313-91392332 | None:intergenic | 20.0% |
| !! | ACTAATTATTATGCATAAAC+TGG | + | chr6_3:91392314-91392333 | None:intergenic | 20.0% |
| !! | TATATGAGACAATCATTATA+TGG | + | chr6_3:91392625-91392644 | None:intergenic | 20.0% |
| !! | AGAATTAATTTATAACCACT+TGG | + | chr6_3:91393610-91393629 | None:intergenic | 20.0% |
| !!! | TATTTGAAATGAAAGAATCA+TGG | + | chr6_3:91393820-91393839 | None:intergenic | 20.0% |
| !! | TAATTGATCTGATTTCTAAT+TGG | - | chr6_3:91393955-91393974 | Msa0964600:intron | 20.0% |
| !! | AATTGATCTGATTTCTAATT+GGG | - | chr6_3:91393956-91393975 | Msa0964600:intron | 20.0% |
| !! | TTCGATGTAATTTCAATTTA+AGG | + | chr6_3:91394584-91394603 | None:intergenic | 20.0% |
| !!! | TTTTAATAAGCTTTGGTGTT+AGG | - | chr6_3:91390505-91390524 | Msa0964600:CDS | 25.0% |
| ! | CATAATTTATGCTTAGAGTT+TGG | - | chr6_3:91390723-91390742 | Msa0964600:intron | 25.0% |
| ! | GTATTTGTATTTATCTGCTA+AGG | - | chr6_3:91391103-91391122 | Msa0964600:intron | 25.0% |
| ! | TACAGAAATCATACCAAAAA+TGG | - | chr6_3:91391212-91391231 | Msa0964600:intron | 25.0% |
| ! | TCATAAACCCTCAAATAATA+AGG | + | chr6_3:91391476-91391495 | None:intergenic | 25.0% |
| ! | ACTATCACAATAAACTAGAA+AGG | + | chr6_3:91391529-91391548 | None:intergenic | 25.0% |
| !!! | GAGGTTTTTAGTTTCTATTT+TGG | - | chr6_3:91391562-91391581 | Msa0964600:intron | 25.0% |
| ! | ACTTTCATATAAGTTGTAAG+CGG | + | chr6_3:91391880-91391899 | None:intergenic | 25.0% |
| ! | ATAATCAACTTATATCTTGC+AGG | - | chr6_3:91392214-91392233 | Msa0964600:intron | 25.0% |
| !!! | TGTTGCAGATTTTAAAGAAA+GGG | - | chr6_3:91392385-91392404 | Msa0964600:intron | 25.0% |
| !! | CATTTTATCCAACACAAAAA+CGG | - | chr6_3:91393049-91393068 | Msa0964600:intron | 25.0% |
| ! | TACAGGAATATGTTAATAGT+CGG | - | chr6_3:91393098-91393117 | Msa0964600:intron | 25.0% |
| !! | TTTTATCCAACCCATAAAAA+AGG | - | chr6_3:91393139-91393158 | Msa0964600:intron | 25.0% |
| ! | TTTATCCAACCCATAAAAAA+GGG | - | chr6_3:91393140-91393159 | Msa0964600:intron | 25.0% |
| ! | TGTCATAAATGTTCAAAAGA+TGG | + | chr6_3:91393166-91393185 | None:intergenic | 25.0% |
| !! | TCTTTTGAACATTTATGACA+AGG | - | chr6_3:91393166-91393185 | Msa0964600:intron | 25.0% |
| !! | TCCTTTTATCACATTTTATC+TGG | - | chr6_3:91393206-91393225 | Msa0964600:intron | 25.0% |
| ! | ACCAGATAAAATGTGATAAA+AGG | + | chr6_3:91393210-91393229 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATGTCCTTTTT+AGG | - | chr6_3:91393311-91393330 | Msa0964600:intron | 25.0% |
| !!! | ACTTGTTTGTTTTGAAAACT+CGG | - | chr6_3:91393413-91393432 | Msa0964600:intron | 25.0% |
| !!! | TGCTTGTTTTTGTTTTTTGT+TGG | - | chr6_3:91393503-91393522 | Msa0964600:intron | 25.0% |
| ! | TAACCCATAAAAAAGCTAAT+GGG | - | chr6_3:91393771-91393790 | Msa0964600:intron | 25.0% |
| ! | CTTTGATTCTGCTAAAATTT+CGG | - | chr6_3:91393929-91393948 | Msa0964600:intron | 25.0% |
| !! | TTTGTTATGAATAAGATGCA+TGG | - | chr6_3:91394027-91394046 | Msa0964600:intron | 25.0% |
| !! | TGAATCAAAATCTGATTTGA+AGG | - | chr6_3:91394392-91394411 | Msa0964600:intron | 25.0% |
| !!! | AAGGATTATTCATTTTGAGT+TGG | - | chr6_3:91394411-91394430 | Msa0964600:intron | 25.0% |
| ! | TTCTATTCTTAAGTTTCCTA+GGG | - | chr6_3:91394784-91394803 | Msa0964600:CDS | 25.0% |
| !! | TAATTTGATGGATTAATCGG+TGG | - | chr6_3:91389922-91389941 | Msa0964600:three_prime_UTR | 30.0% |
| GTTTATACGAATGTTTCGAA+AGG | - | chr6_3:91389990-91390009 | Msa0964600:three_prime_UTR | 30.0% | |
| TAGCTACAAAACAACTAACA+TGG | + | chr6_3:91390114-91390133 | None:intergenic | 30.0% | |
| AATTGTATATGTCTGTGTTG+TGG | - | chr6_3:91390202-91390221 | Msa0964600:CDS | 30.0% | |
| TTTATGCTTAGAGTTTGGTT+AGG | - | chr6_3:91390728-91390747 | Msa0964600:intron | 30.0% | |
| CATAATTTATGCTTAGAGGT+TGG | - | chr6_3:91390765-91390784 | Msa0964600:intron | 30.0% | |
| TGACATTGAATTGATCAAGT+AGG | + | chr6_3:91390796-91390815 | None:intergenic | 30.0% | |
| !!! | TTTTGATAAGCTTTGGTGTT+CGG | - | chr6_3:91390923-91390942 | Msa0964600:intron | 30.0% |
| TTAAGCACTCATGCTTAATT+TGG | - | chr6_3:91391063-91391082 | Msa0964600:intron | 30.0% | |
| TAAGCACTCATGCTTAATTT+GGG | - | chr6_3:91391064-91391083 | Msa0964600:intron | 30.0% | |
| TAACTCATTTCCTAAGCTTA+TGG | + | chr6_3:91391190-91391209 | None:intergenic | 30.0% | |
| GCTTTATCCAATAGTTGAAA+AGG | + | chr6_3:91391294-91391313 | None:intergenic | 30.0% | |
| TGATATCATAAACCTACCTA+TGG | + | chr6_3:91391379-91391398 | None:intergenic | 30.0% | |
| TAGCTCAACCTTATTATTTG+AGG | - | chr6_3:91391465-91391484 | Msa0964600:intron | 30.0% | |
| AGCTCAACCTTATTATTTGA+GGG | - | chr6_3:91391466-91391485 | Msa0964600:intron | 30.0% | |
| TAAAAACCTCTTAGAAAGAG+AGG | + | chr6_3:91391552-91391571 | None:intergenic | 30.0% | |
| ! | ATAAGCACTGTCATAATGTT+TGG | - | chr6_3:91391769-91391788 | Msa0964600:CDS | 30.0% |
| ! | TAAGCACTGTCATAATGTTT+GGG | - | chr6_3:91391770-91391789 | Msa0964600:CDS | 30.0% |
| !! | TATCTACAGTTGTTTTCAGT+AGG | - | chr6_3:91392059-91392078 | Msa0964600:CDS | 30.0% |
| ! | TTGATTATAAGGGTATGCTT+GGG | + | chr6_3:91392202-91392221 | None:intergenic | 30.0% |
| AGTGATTTAACTGTTAGTTG+AGG | - | chr6_3:91392331-91392350 | Msa0964600:intron | 30.0% | |
| !! | CTGTTGCAGATTTTAAAGAA+AGG | - | chr6_3:91392384-91392403 | Msa0964600:intron | 30.0% |
| !! | GTTGCAGATTTTAAAGAAAG+GGG | - | chr6_3:91392386-91392405 | Msa0964600:intron | 30.0% |
| ! | AAAAGTCTTGTGCATTACAA+TGG | + | chr6_3:91392475-91392494 | None:intergenic | 30.0% |
| !! | ATGGAATTCTTTAGAATGAC+AGG | + | chr6_3:91392606-91392625 | None:intergenic | 30.0% |
| GATTATGAAAGTCGTATTAC+AGG | - | chr6_3:91392664-91392683 | Msa0964600:intron | 30.0% | |
| !! | CAACCGTTATTTCTAAAGAA+GGG | - | chr6_3:91392810-91392829 | Msa0964600:intron | 30.0% |
| ! | TGTCCCTTCTTTAGAAATAA+CGG | + | chr6_3:91392816-91392835 | None:intergenic | 30.0% |
| ! | ATTTTATTCTCTGTAACCCT+GGG | - | chr6_3:91392891-91392910 | Msa0964600:intron | 30.0% |
| !! | TTTATGGGTTGGATAAAATG+TGG | + | chr6_3:91393137-91393156 | None:intergenic | 30.0% |
| !!! | AAAAGATGGCCCTTTTTTAT+GGG | + | chr6_3:91393152-91393171 | None:intergenic | 30.0% |
| !!! | TGTTTTGAAAACTCGGTATT+CGG | - | chr6_3:91393420-91393439 | Msa0964600:intron | 30.0% |
| !!! | GTTTTTGTTTTTTGTTGGCA+TGG | - | chr6_3:91393508-91393527 | Msa0964600:intron | 30.0% |
| AACATGACCAAATACTCATT+TGG | - | chr6_3:91393658-91393677 | Msa0964600:intron | 30.0% | |
| ACATGACCAAATACTCATTT+GGG | - | chr6_3:91393659-91393678 | Msa0964600:intron | 30.0% | |
| TTTGATAAGCAGATTGAATG+TGG | + | chr6_3:91393738-91393757 | None:intergenic | 30.0% | |
| CTAACCCATAAAAAAGCTAA+TGG | - | chr6_3:91393770-91393789 | Msa0964600:intron | 30.0% | |
| !!! | CTTCCCATTAGCTTTTTTAT+GGG | + | chr6_3:91393777-91393796 | None:intergenic | 30.0% |
| !!! | ACTTCCCATTAGCTTTTTTA+TGG | + | chr6_3:91393778-91393797 | None:intergenic | 30.0% |
| ATGGAACATTTATAGAGACA+TGG | + | chr6_3:91393801-91393820 | None:intergenic | 30.0% | |
| TATATCTGCATTTGCGTATA+TGG | - | chr6_3:91393895-91393914 | Msa0964600:intron | 30.0% | |
| ACAATATGAAGCGTAAAACA+AGG | - | chr6_3:91394319-91394338 | Msa0964600:intron | 30.0% | |
| !! | AAAAGTGTTTGAGATGTTAC+TGG | - | chr6_3:91394465-91394484 | Msa0964600:intron | 30.0% |
| !!! | TAAGGAGTTTTTTTTCTCTG+TGG | + | chr6_3:91394566-91394585 | None:intergenic | 30.0% |
| CATCGAACATATTTCATTAC+TGG | - | chr6_3:91394597-91394616 | Msa0964600:intron | 30.0% | |
| CTTCTATTCTTAAGTTTCCT+AGG | - | chr6_3:91394783-91394802 | Msa0964600:CDS | 30.0% | |
| TCTATTCTTAAGTTTCCTAG+GGG | - | chr6_3:91394785-91394804 | Msa0964600:CDS | 30.0% | |
| ! | GGATTTCTTTTGCATTTGTA+GGG | + | chr6_3:91394883-91394902 | None:intergenic | 30.0% |
| ! | TGGATTTCTTTTGCATTTGT+AGG | + | chr6_3:91394884-91394903 | None:intergenic | 30.0% |
| TTTCGAAATTACTTACACGC+CGG | + | chr6_3:91389865-91389884 | None:intergenic | 35.0% | |
| TCATTCCAGTATTTGCTTAG+AGG | - | chr6_3:91390061-91390080 | Msa0964600:three_prime_UTR | 35.0% | |
| ACAAACCTCTAAGCAAATAC+TGG | + | chr6_3:91390069-91390088 | None:intergenic | 35.0% | |
| AATAACCAACTTCTGATCGA+AGG | + | chr6_3:91390701-91390720 | None:intergenic | 35.0% | |
| ! | GCATTAAGAGTTCTGATTGA+AGG | + | chr6_3:91390886-91390905 | None:intergenic | 35.0% |
| ! | ACAGACCTTTTGATAAGCTT+TGG | - | chr6_3:91390916-91390935 | Msa0964600:intron | 35.0% |
| GAACACCAAAGCTTATCAAA+AGG | + | chr6_3:91390924-91390943 | None:intergenic | 35.0% | |
| GCTAAGGTATGCATTTATCA+AGG | - | chr6_3:91391119-91391138 | Msa0964600:intron | 35.0% | |
| TATCACATGTCCATAAGCTT+AGG | - | chr6_3:91391177-91391196 | Msa0964600:intron | 35.0% | |
| !! | ACTGATAACTCAGCCATTTT+TGG | + | chr6_3:91391228-91391247 | None:intergenic | 35.0% |
| AATGGCTGAGTTATCAGTTA+TGG | - | chr6_3:91391230-91391249 | Msa0964600:intron | 35.0% | |
| ATGGCTGAGTTATCAGTTAT+GGG | - | chr6_3:91391231-91391250 | Msa0964600:intron | 35.0% | |
| ATTCAGTTAGCAATATCACG+TGG | - | chr6_3:91391268-91391287 | Msa0964600:intron | 35.0% | |
| CATGGGAGAACTTTACAATT+GGG | + | chr6_3:91391421-91391440 | None:intergenic | 35.0% | |
| AATTGTAAAGTTCTCCCATG+CGG | - | chr6_3:91391421-91391440 | Msa0964600:intron | 35.0% | |
| TAAACTAGAAAGGCTAGGTA+GGG | + | chr6_3:91391519-91391538 | None:intergenic | 35.0% | |
| ATAAACTAGAAAGGCTAGGT+AGG | + | chr6_3:91391520-91391539 | None:intergenic | 35.0% | |
| CACAATAAACTAGAAAGGCT+AGG | + | chr6_3:91391524-91391543 | None:intergenic | 35.0% | |
| CTTCTATAATCAAGACAACG+TGG | + | chr6_3:91392138-91392157 | None:intergenic | 35.0% | |
| ! | GTTGATTATAAGGGTATGCT+TGG | + | chr6_3:91392203-91392222 | None:intergenic | 35.0% |
| TTTAAAGAAAGGGGAACTTC+AGG | - | chr6_3:91392395-91392414 | Msa0964600:intron | 35.0% | |
| ! | CAATCATGCTGATAGTGTAA+GGG | + | chr6_3:91392515-91392534 | None:intergenic | 35.0% |
| ! | TCAATCATGCTGATAGTGTA+AGG | + | chr6_3:91392516-91392535 | None:intergenic | 35.0% |
| !! | AGAAGCACTACCCTATAAAA+CGG | - | chr6_3:91392711-91392730 | Msa0964600:intron | 35.0% |
| ! | TCAATGGACACCGTTTTATA+GGG | + | chr6_3:91392724-91392743 | None:intergenic | 35.0% |
| TATAAAACGGTGTCCATTGA+GGG | - | chr6_3:91392724-91392743 | Msa0964600:intron | 35.0% | |
| !! | GCAACCGTTATTTCTAAAGA+AGG | - | chr6_3:91392809-91392828 | Msa0964600:intron | 35.0% |
| ! | TGTGTTGCTCAGTTATTTCA+TGG | - | chr6_3:91392864-91392883 | Msa0964600:intron | 35.0% |
| CAGGGTTACAGAGAATAAAA+TGG | + | chr6_3:91392892-91392911 | None:intergenic | 35.0% | |
| ! | CATTTTATTCTCTGTAACCC+TGG | - | chr6_3:91392890-91392909 | Msa0964600:intron | 35.0% |
| !! | AACATGATCCGTTTTTGTGT+TGG | + | chr6_3:91393060-91393079 | None:intergenic | 35.0% |
| TGAACATCTGTGATAGTTAC+AGG | - | chr6_3:91393081-91393100 | Msa0964600:intron | 35.0% | |
| !!! | CAAAAGATGGCCCTTTTTTA+TGG | + | chr6_3:91393153-91393172 | None:intergenic | 35.0% |
| AAGTTTGAGAAGTTGTTCGT+TGG | - | chr6_3:91393240-91393259 | Msa0964600:intron | 35.0% | |
| ! | AATACAAGGCGCATTTTATC+TGG | - | chr6_3:91393279-91393298 | Msa0964600:intron | 35.0% |
| !! | TCCTTTTTAGGCAAGCTTTT+GGG | - | chr6_3:91393323-91393342 | Msa0964600:intron | 35.0% |
| !! | TTTTGGGTAGAATTTGGTCA+TGG | - | chr6_3:91393339-91393358 | Msa0964600:intron | 35.0% |
| TTTGGGTAGAATTTGGTCAT+GGG | - | chr6_3:91393340-91393359 | Msa0964600:intron | 35.0% | |
| !!! | TTGTTTTTTGTTGGCATGGT+CGG | - | chr6_3:91393512-91393531 | Msa0964600:intron | 35.0% |
| !!! | TCTGGTTTGCTTGTTTTAGT+TGG | - | chr6_3:91393555-91393574 | Msa0964600:intron | 35.0% |
| !!! | CTGGTTTGCTTGTTTTAGTT+GGG | - | chr6_3:91393556-91393575 | Msa0964600:intron | 35.0% |
| ! | CATGCATTTTCTGTAAGTTG+TGG | - | chr6_3:91393712-91393731 | Msa0964600:intron | 35.0% |
| TTCTTTCCATAAGTTGTGTC+TGG | - | chr6_3:91393872-91393891 | Msa0964600:intron | 35.0% | |
| GATATACCAGACACAACTTA+TGG | + | chr6_3:91393881-91393900 | None:intergenic | 35.0% | |
| TTTATCATTCAGCTCAAGCA+CGG | + | chr6_3:91394160-91394179 | None:intergenic | 35.0% | |
| CAAAAGCAAACAATTTCGTC+TGG | - | chr6_3:91394183-91394202 | Msa0964600:intron | 35.0% | |
| TTGAAGATGCTAAGTTGTAC+AGG | - | chr6_3:91394268-91394287 | Msa0964600:intron | 35.0% | |
| TGAAGATGCTAAGTTGTACA+GGG | - | chr6_3:91394269-91394288 | Msa0964600:intron | 35.0% | |
| ! | ATACGTGTGCCTATTTTGTT+AGG | - | chr6_3:91394516-91394535 | Msa0964600:CDS | 35.0% |
| CAAGACTCTCCTAACAAAAT+AGG | + | chr6_3:91394528-91394547 | None:intergenic | 35.0% | |
| ! | CTATTTTGTTAGGAGAGTCT+TGG | - | chr6_3:91394526-91394545 | Msa0964600:CDS | 35.0% |
| ! | TCCAAGTATCCATGATTTTC+AGG | - | chr6_3:91394809-91394828 | Msa0964600:exon | 35.0% |
| TCCTGAAAATCATGGATACT+TGG | + | chr6_3:91394813-91394832 | None:intergenic | 35.0% | |
| CAGATAAGTCCTGAAAATCA+TGG | + | chr6_3:91394821-91394840 | None:intergenic | 35.0% | |
| TACCACAATGTCTCGTTCAT+TGG | - | chr6_3:91389728-91389747 | Msa0964600:three_prime_UTR | 40.0% | |
| AACCAATGAACGAGACATTG+TGG | + | chr6_3:91389733-91389752 | None:intergenic | 40.0% | |
| !! | GTTAATCGCTTTTGACCTAC+TGG | + | chr6_3:91389759-91389778 | None:intergenic | 40.0% |
| GTTGTTCGTCTCAAGAAACA+CGG | - | chr6_3:91389789-91389808 | Msa0964600:three_prime_UTR | 40.0% | |
| !!! | TCGGTGGTTTTGTAGTGAAA+AGG | - | chr6_3:91389938-91389957 | Msa0964600:three_prime_UTR | 40.0% |
| !! | TGAAGTGTTGCAGTCACATA+CGG | - | chr6_3:91389968-91389987 | Msa0964600:three_prime_UTR | 40.0% |
| AGGTGTTCTTGCTAAGTCTA+AGG | - | chr6_3:91390010-91390029 | Msa0964600:three_prime_UTR | 40.0% | |
| AAGGATTTGAATGCAGCGTT+TGG | - | chr6_3:91390029-91390048 | Msa0964600:three_prime_UTR | 40.0% | |
| GTAGCTATGACACACTGATA+TGG | - | chr6_3:91390127-91390146 | Msa0964600:CDS | 40.0% | |
| AACATATCAATGCCCCGTTT+AGG | + | chr6_3:91390345-91390364 | None:intergenic | 40.0% | |
| !! | GGGCATTGATATGTTGATAC+TGG | - | chr6_3:91390350-91390369 | Msa0964600:CDS | 40.0% |
| ATAGCTATGAAACACTGTCG+TGG | - | chr6_3:91390831-91390850 | Msa0964600:intron | 40.0% | |
| ! | CAGTGTCCTAAAAGTGTAGT+TGG | + | chr6_3:91390857-91390876 | None:intergenic | 40.0% |
| !!! | CAACTACACTTTTAGGACAC+TGG | - | chr6_3:91390855-91390874 | Msa0964600:intron | 40.0% |
| ! | CACTCATGCTTAATTTGGGT+TGG | - | chr6_3:91391068-91391087 | Msa0964600:intron | 40.0% |
| ! | CAGTTATGGGCTATACATCA+AGG | - | chr6_3:91391244-91391263 | Msa0964600:intron | 40.0% |
| TATGGAACTGATGTGTAGCA+GGG | + | chr6_3:91391361-91391380 | None:intergenic | 40.0% | |
| TACACATCAGTTCCATAGGT+AGG | - | chr6_3:91391364-91391383 | Msa0964600:intron | 40.0% | |
| TACAATTGGGACTTAAGTCG+CGG | + | chr6_3:91391408-91391427 | None:intergenic | 40.0% | |
| GCATGGGAGAACTTTACAAT+TGG | + | chr6_3:91391422-91391441 | None:intergenic | 40.0% | |
| !! | TAGGTAGGGTAATGGAATCA+GGG | + | chr6_3:91391505-91391524 | None:intergenic | 40.0% |
| GATAGTCCTCTCTTTCTAAG+AGG | - | chr6_3:91391543-91391562 | Msa0964600:intron | 40.0% | |
| ATTTGCAGCTTGAGTGCTTA+AGG | + | chr6_3:91391723-91391742 | None:intergenic | 40.0% | |
| TTAAGCACTCAAGCTGCAAA+TGG | - | chr6_3:91391722-91391741 | Msa0964600:CDS | 40.0% | |
| TAAGCACTCAAGCTGCAAAT+GGG | - | chr6_3:91391723-91391742 | Msa0964600:CDS | 40.0% | |
| ACACTCACTTAGGGTACATA+TGG | + | chr6_3:91392005-91392024 | None:intergenic | 40.0% | |
| CTTCCAAACACACTCACTTA+GGG | + | chr6_3:91392014-91392033 | None:intergenic | 40.0% | |
| TCTTCCAAACACACTCACTT+AGG | + | chr6_3:91392015-91392034 | None:intergenic | 40.0% | |
| AATGCTGTCTAGTCAGTTCA+GGG | - | chr6_3:91392440-91392459 | Msa0964600:intron | 40.0% | |
| ! | AGTCTTGTGCATTACAATGG+TGG | + | chr6_3:91392472-91392491 | None:intergenic | 40.0% |
| TGTTTGGATCAACAGCGAAA+TGG | + | chr6_3:91392557-91392576 | None:intergenic | 40.0% | |
| ! | CTCAATGGACACCGTTTTAT+AGG | + | chr6_3:91392725-91392744 | None:intergenic | 40.0% |
| CTATAAAACGGTGTCCATTG+AGG | - | chr6_3:91392723-91392742 | Msa0964600:intron | 40.0% | |
| ! | CTCAGCTTTTCCAAAAGGAT+AGG | + | chr6_3:91392779-91392798 | None:intergenic | 40.0% |
| !! | CTTCTAGAACAGAAAACCCA+GGG | + | chr6_3:91392910-91392929 | None:intergenic | 40.0% |
| !! | CGCATTTTATCTGGTTTCTC+AGG | - | chr6_3:91393288-91393307 | Msa0964600:intron | 40.0% |
| !! | GTCCTTTTTAGGCAAGCTTT+TGG | - | chr6_3:91393322-91393341 | Msa0964600:intron | 40.0% |
| ACCCAAAAGCTTGCCTAAAA+AGG | + | chr6_3:91393327-91393346 | None:intergenic | 40.0% | |
| !! | GCAAGCTTTTGGGTAGAATT+TGG | - | chr6_3:91393333-91393352 | Msa0964600:intron | 40.0% |
| ! | GCAGGGGTTAATCTTTTGTT+CGG | - | chr6_3:91393362-91393381 | Msa0964600:intron | 40.0% |
| ! | CAGGGGTTAATCTTTTGTTC+GGG | - | chr6_3:91393363-91393382 | Msa0964600:intron | 40.0% |
| !! | AGAGTGTTTTCCAGCTAACA+AGG | + | chr6_3:91393538-91393557 | None:intergenic | 40.0% |
| TTGTTAGCTGGAAAACACTC+TGG | - | chr6_3:91393537-91393556 | Msa0964600:intron | 40.0% | |
| !!! | TTGTTTTAGTTGGGTCTGCT+AGG | - | chr6_3:91393565-91393584 | Msa0964600:intron | 40.0% |
| GCTAGGTTACACCTTGTATT+TGG | - | chr6_3:91393582-91393601 | Msa0964600:intron | 40.0% | |
| ! | ACCTTGTATTTGGAACCAAG+TGG | - | chr6_3:91393592-91393611 | Msa0964600:intron | 40.0% |
| ACCACTTGGTTCCAAATACA+AGG | + | chr6_3:91393596-91393615 | None:intergenic | 40.0% | |
| ! | CTGATTTCTAATTGGGTTGC+AGG | - | chr6_3:91393963-91393982 | Msa0964600:intron | 40.0% |
| ! | TGGGTTGCAGGTTTTTGAAT+TGG | - | chr6_3:91393975-91393994 | Msa0964600:intron | 40.0% |
| TGACAATCCTTATACAGACC+AGG | + | chr6_3:91394003-91394022 | None:intergenic | 40.0% | |
| TCTTGCTCACTCTCTTTATG+TGG | - | chr6_3:91394062-91394081 | Msa0964600:intron | 40.0% | |
| CTCACTCTCTTTATGTGGAT+GGG | - | chr6_3:91394067-91394086 | Msa0964600:intron | 40.0% | |
| TCACTCTCTTTATGTGGATG+GGG | - | chr6_3:91394068-91394087 | Msa0964600:intron | 40.0% | |
| ! | TGTGGATTACAATGATCACG+AGG | - | chr6_3:91394098-91394117 | Msa0964600:intron | 40.0% |
| ACGGATTCAGAAGTTCTTTG+GGG | + | chr6_3:91394141-91394160 | None:intergenic | 40.0% | |
| CACGGATTCAGAAGTTCTTT+GGG | + | chr6_3:91394142-91394161 | None:intergenic | 40.0% | |
| !!! | GTGTTGCACTTGTTTTGCTT+TGG | + | chr6_3:91394234-91394253 | None:intergenic | 40.0% |
| !! | ACTCTTCTTCAGATAGTGGA+GGG | + | chr6_3:91394350-91394369 | None:intergenic | 40.0% |
| TTACTGGTGACAGATTTGTG+CGG | - | chr6_3:91394613-91394632 | Msa0964600:intron | 40.0% | |
| !! | CGTTCATTGGTTCAACCAGT+AGG | - | chr6_3:91389741-91389760 | Msa0964600:three_prime_UTR | 45.0% |
| ACCCTAACACCGTTCTTTCA+TGG | - | chr6_3:91389835-91389854 | Msa0964600:three_prime_UTR | 45.0% | |
| ! | GCCATGAAAGAACGGTGTTA+GGG | + | chr6_3:91389839-91389858 | None:intergenic | 45.0% |
| ! | ACGCTTTCGATCAGAAGTGT+CGG | - | chr6_3:91390252-91390271 | Msa0964600:CDS | 45.0% |
| !! | ATGAAGCACTGACACAGACA+CGG | - | chr6_3:91390316-91390335 | Msa0964600:CDS | 45.0% |
| CACAGACACGGAAACCTAAA+CGG | - | chr6_3:91390328-91390347 | Msa0964600:CDS | 45.0% | |
| ACAGACACGGAAACCTAAAC+GGG | - | chr6_3:91390329-91390348 | Msa0964600:CDS | 45.0% | |
| ATGCCTTCAATCAGACGAGT+CGG | - | chr6_3:91390448-91390467 | Msa0964600:CDS | 45.0% | |
| TGTCAGTGTCGTGTCTATGT+TGG | - | chr6_3:91390648-91390667 | Msa0964600:intron | 45.0% | |
| TATGTTGGACACTGACGTGT+AGG | - | chr6_3:91390663-91390682 | Msa0964600:intron | 45.0% | |
| ACACTCCTTCGATCAGAAGT+TGG | - | chr6_3:91390693-91390712 | Msa0964600:intron | 45.0% | |
| ! | TCGTGGCCAACTACACTTTT+AGG | - | chr6_3:91390848-91390867 | Msa0964600:intron | 45.0% |
| ! | CACGTGGCCTTTTCAACTAT+TGG | - | chr6_3:91391284-91391303 | Msa0964600:intron | 45.0% |
| ! | TGTTGGATAAGGTTGATCGC+AGG | + | chr6_3:91391332-91391351 | None:intergenic | 45.0% |
| GCGATCAACCTTATCCAACA+AGG | - | chr6_3:91391332-91391351 | Msa0964600:intron | 45.0% | |
| CTATGGAACTGATGTGTAGC+AGG | + | chr6_3:91391362-91391381 | None:intergenic | 45.0% | |
| CTGCTACACATCAGTTCCAT+AGG | - | chr6_3:91391360-91391379 | Msa0964600:intron | 45.0% | |
| !! | AGGTAGGGTAATGGAATCAG+GGG | + | chr6_3:91391504-91391523 | None:intergenic | 45.0% |
| !! | CTAGGTAGGGTAATGGAATC+AGG | + | chr6_3:91391506-91391525 | None:intergenic | 45.0% |
| AGAAAGGCTAGGTAGGGTAA+TGG | + | chr6_3:91391513-91391532 | None:intergenic | 45.0% | |
| GTACCCTAAGTGAGTGTGTT+TGG | - | chr6_3:91392008-91392027 | Msa0964600:CDS | 45.0% | |
| ! | TAAGGGTATGCTTGGGACAT+GGG | + | chr6_3:91392195-91392214 | None:intergenic | 45.0% |
| ! | ATAAGGGTATGCTTGGGACA+TGG | + | chr6_3:91392196-91392215 | None:intergenic | 45.0% |
| !! | TTCAGGTTGCTGGTAAAGAG+AGG | - | chr6_3:91392412-91392431 | Msa0964600:intron | 45.0% |
| ! | TCAGGTTGCTGGTAAAGAGA+GGG | - | chr6_3:91392413-91392432 | Msa0964600:intron | 45.0% |
| CAATGCTGTCTAGTCAGTTC+AGG | - | chr6_3:91392439-91392458 | Msa0964600:intron | 45.0% | |
| CATGATTGAACGCCTCATGA+GGG | - | chr6_3:91392527-91392546 | Msa0964600:intron | 45.0% | |
| CGAAATGGATATCCCTCATG+AGG | + | chr6_3:91392542-91392561 | None:intergenic | 45.0% | |
| ACAAGATACCTGCTTCTTGG+AGG | + | chr6_3:91392583-91392602 | None:intergenic | 45.0% | |
| AGGACAAGATACCTGCTTCT+TGG | + | chr6_3:91392586-91392605 | None:intergenic | 45.0% | |
| GAAAGTCGTATTACAGGCTC+TGG | - | chr6_3:91392670-91392689 | Msa0964600:intron | 45.0% | |
| !!! | GGAGGAAGTACCTATCCTTT+TGG | - | chr6_3:91392766-91392785 | Msa0964600:intron | 45.0% |
| ! | ACTCGCTCAGCTTTTCCAAA+AGG | + | chr6_3:91392784-91392803 | None:intergenic | 45.0% |
| !! | TTTTGGAAAAGCTGAGCGAG+TGG | - | chr6_3:91392783-91392802 | Msa0964600:intron | 45.0% |
| !! | GCTTCTAGAACAGAAAACCC+AGG | + | chr6_3:91392911-91392930 | None:intergenic | 45.0% |
| ! | CAAGCCTTATGCCACTAAGT+GGG | - | chr6_3:91392965-91392984 | Msa0964600:intron | 45.0% |
| ! | AAGCCTTATGCCACTAAGTG+GGG | - | chr6_3:91392966-91392985 | Msa0964600:intron | 45.0% |
| !!! | GATGGCCCTTTTTTATGGGT+TGG | + | chr6_3:91393148-91393167 | None:intergenic | 45.0% |
| GTAGAATTTGGTCATGGGCA+GGG | - | chr6_3:91393345-91393364 | Msa0964600:intron | 45.0% | |
| TAGAATTTGGTCATGGGCAG+GGG | - | chr6_3:91393346-91393365 | Msa0964600:intron | 45.0% | |
| ! | CGGGTGCAGTAGTTTTTCTT+AGG | - | chr6_3:91393382-91393401 | Msa0964600:intron | 45.0% |
| AAAACTCGGTATTCGGTCCA+AGG | - | chr6_3:91393427-91393446 | Msa0964600:intron | 45.0% | |
| !! | ATTGGACCCCTTGGATTAGT+CGG | + | chr6_3:91393454-91393473 | None:intergenic | 45.0% |
| ACAGCGCCCAAATGAGTATT+TGG | + | chr6_3:91393668-91393687 | None:intergenic | 45.0% | |
| ! | CAGGTTTTTGAATTGGAGCC+TGG | - | chr6_3:91393982-91394001 | Msa0964600:intron | 45.0% |
| ATTGGAGCCTGGTCTGTATA+AGG | - | chr6_3:91393993-91394012 | Msa0964600:intron | 45.0% | |
| GCTCACTCTCTTTATGTGGA+TGG | - | chr6_3:91394066-91394085 | Msa0964600:intron | 45.0% | |
| !! | TCAGAAGTTCTTTGGGGCAA+TGG | + | chr6_3:91394135-91394154 | None:intergenic | 45.0% |
| GCACGGATTCAGAAGTTCTT+TGG | + | chr6_3:91394143-91394162 | None:intergenic | 45.0% | |
| TTTGGTTGTTGTCCCTCAGT+AGG | + | chr6_3:91394216-91394235 | None:intergenic | 45.0% | |
| ! | CACTCTTCTTCAGATAGTGG+AGG | + | chr6_3:91394351-91394370 | None:intergenic | 45.0% |
| GTGCACTCTTCTTCAGATAG+TGG | + | chr6_3:91394354-91394373 | None:intergenic | 45.0% | |
| ! | AGAAGAGTGCACAGCAGATA+TGG | - | chr6_3:91394362-91394381 | Msa0964600:intron | 45.0% |
| CGCCATGAAAGAACGGTGTT+AGG | + | chr6_3:91389840-91389859 | None:intergenic | 50.0% | |
| ACCGTTCTTTCATGGCGTTC+CGG | - | chr6_3:91389843-91389862 | Msa0964600:three_prime_UTR | 50.0% | |
| ! | TTCTGATCGAAAGCGTGGTC+AGG | + | chr6_3:91390248-91390267 | None:intergenic | 50.0% |
| GACACTTCTGATCGAAAGCG+TGG | + | chr6_3:91390253-91390272 | None:intergenic | 50.0% | |
| CAGACACGGAAACCTAAACG+GGG | - | chr6_3:91390330-91390349 | Msa0964600:CDS | 50.0% | |
| TGTCGCACACTAGCATGTGT+AGG | - | chr6_3:91390416-91390435 | Msa0964600:CDS | 50.0% | |
| ! | CGTCTGATTGAAGGCATGTC+TGG | + | chr6_3:91390445-91390464 | None:intergenic | 50.0% |
| !! | CTTCTGATCGAAGGAGTGTC+CGG | + | chr6_3:91390692-91390711 | None:intergenic | 50.0% |
| TCGCAGGCAGCTAATGAACT+AGG | + | chr6_3:91391316-91391335 | None:intergenic | 50.0% | |
| ! | CAGGGCATCCTTGTTGGATA+AGG | + | chr6_3:91391343-91391362 | None:intergenic | 50.0% |
| CACTCAAGCTGCAAATGGGT+TGG | - | chr6_3:91391727-91391746 | Msa0964600:CDS | 50.0% | |
| !! | AAAGGGGAACTTCAGGTTGC+TGG | - | chr6_3:91392402-91392421 | Msa0964600:intron | 50.0% |
| !! | AGTGTAAGGGCGCTTAGTCT+CGG | + | chr6_3:91392502-91392521 | None:intergenic | 50.0% |
| GCATGATTGAACGCCTCATG+AGG | - | chr6_3:91392526-91392545 | Msa0964600:intron | 50.0% | |
| !! | TGCTTCTTGGAGGTGCTGTT+TGG | + | chr6_3:91392573-91392592 | None:intergenic | 50.0% |
| AAACAGCACCTCCAAGAAGC+AGG | - | chr6_3:91392572-91392591 | Msa0964600:intron | 50.0% | |
| !! | ACAGGCTCTGGAGTTGATTC+AGG | - | chr6_3:91392682-91392701 | Msa0964600:intron | 50.0% |
| GATAGGTACTTCCTCCTCAG+GGG | + | chr6_3:91392762-91392781 | None:intergenic | 50.0% | |
| GGATAGGTACTTCCTCCTCA+GGG | + | chr6_3:91392763-91392782 | None:intergenic | 50.0% | |
| AGGATAGGTACTTCCTCCTC+AGG | + | chr6_3:91392764-91392783 | None:intergenic | 50.0% | |
| CCACTTAGTGGCATAAGGCT+TGG | + | chr6_3:91392967-91392986 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATGCCACTAAG+TGG | - | chr6_3:91392964-91392983 | Msa0964600:intron | 50.0% |
| CAACCCCACTTAGTGGCATA+AGG | + | chr6_3:91392972-91392991 | None:intergenic | 50.0% | |
| TTAGTGGCAACCCCACTTAG+TGG | + | chr6_3:91392979-91392998 | None:intergenic | 50.0% | |
| TAAGTGGGGTTGCCACTAAG+TGG | - | chr6_3:91392980-91392999 | Msa0964600:intron | 50.0% | |
| AAGTGGGGTTGCCACTAAGT+GGG | - | chr6_3:91392981-91393000 | Msa0964600:intron | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | + | chr6_3:91392995-91393014 | None:intergenic | 50.0% | |
| GGTAGAATTTGGTCATGGGC+AGG | - | chr6_3:91393344-91393363 | Msa0964600:intron | 50.0% | |
| TCCAAGGACCGACTAATCCA+AGG | - | chr6_3:91393443-91393462 | Msa0964600:intron | 50.0% | |
| CCAAGGACCGACTAATCCAA+GGG | - | chr6_3:91393444-91393463 | Msa0964600:intron | 50.0% | |
| CAAGGACCGACTAATCCAAG+GGG | - | chr6_3:91393445-91393464 | Msa0964600:intron | 50.0% | |
| TGTGGATGGGGATACTCATG+TGG | - | chr6_3:91394080-91394099 | Msa0964600:intron | 50.0% | |
| TCTGGACCTAAGCCTACTGA+GGG | - | chr6_3:91394201-91394220 | Msa0964600:intron | 50.0% | |
| TGTTGTCCCTCAGTAGGCTT+AGG | + | chr6_3:91394210-91394229 | None:intergenic | 50.0% | |
| TGTGCGGTTCTGCTTTCTCT+TGG | - | chr6_3:91394629-91394648 | Msa0964600:intron | 50.0% | |
| CATGGATACTTGGATCCCCT+AGG | + | chr6_3:91394803-91394822 | None:intergenic | 50.0% | |
| GCCGGAACGCCATGAAAGAA+CGG | + | chr6_3:91389847-91389866 | None:intergenic | 55.0% | |
| !! | GCACCGACTCGTCTGATTGA+AGG | + | chr6_3:91390454-91390473 | None:intergenic | 55.0% |
| TCAATCAGACGAGTCGGTGC+TGG | - | chr6_3:91390454-91390473 | Msa0964600:CDS | 55.0% | |
| GACACTGACGTGTAGGACAC+CGG | - | chr6_3:91390670-91390689 | Msa0964600:intron | 55.0% | |
| ! | GTGTAGCAGGGCATCCTTGT+TGG | + | chr6_3:91391349-91391368 | None:intergenic | 55.0% |
| GTTCTCCCATGCGGATGCAT+TGG | - | chr6_3:91391430-91391449 | Msa0964600:intron | 55.0% | |
| CTTCGCCAATGCATCCGCAT+GGG | + | chr6_3:91391438-91391457 | None:intergenic | 55.0% | |
| TCTTCGCCAATGCATCCGCA+TGG | + | chr6_3:91391439-91391458 | None:intergenic | 55.0% | |
| ! | GCGGATGCATTGGCGAAGAT+TGG | - | chr6_3:91391440-91391459 | Msa0964600:intron | 55.0% |
| !! | GTGTAAGGGCGCTTAGTCTC+GGG | + | chr6_3:91392501-91392520 | None:intergenic | 55.0% |
| GGAAAAGCTGAGCGAGTGGA+AGG | - | chr6_3:91392787-91392806 | Msa0964600:intron | 55.0% | |
| AGTGGGGTTGCCACTAAGTG+GGG | - | chr6_3:91392982-91393001 | Msa0964600:intron | 55.0% | |
| !! | CCCTTGGATTAGTCGGTCCT+TGG | + | chr6_3:91393447-91393466 | None:intergenic | 55.0% |
| !! | GTTCTTTGGGGCAATGGTGC+AGG | + | chr6_3:91394129-91394148 | None:intergenic | 55.0% |
| GTCTGGACCTAAGCCTACTG+AGG | - | chr6_3:91394200-91394219 | Msa0964600:intron | 55.0% | |
| GGGAACACCACAAGAGTGAG+TGG | - | chr6_3:91394289-91394308 | Msa0964600:intron | 55.0% | |
| ! | GCTTGTGCCACTCACTCTTG+TGG | + | chr6_3:91394299-91394318 | None:intergenic | 55.0% |
| GCTAGTGTGCGACACACACG+TGG | + | chr6_3:91390410-91390429 | None:intergenic | 60.0% | |
| !! | TCAGACGAGTCGGTGCTGGA+AGG | - | chr6_3:91390458-91390477 | Msa0964600:CDS | 60.0% |
| GGGTTGCCACTAAGTGGGGT+TGG | - | chr6_3:91392986-91393005 | Msa0964600:intron | 60.0% | |
| CCAATCCCACCACCCACATG+CGG | - | chr6_3:91393469-91393488 | Msa0964600:intron | 60.0% | |
| CAATCCCACCACCCACATGC+GGG | - | chr6_3:91393470-91393489 | Msa0964600:intron | 60.0% | |
| AATCCCACCACCCACATGCG+GGG | - | chr6_3:91393471-91393490 | Msa0964600:intron | 60.0% | |
| !! | GCATGGTCGGCCTTGTTAGC+TGG | - | chr6_3:91393525-91393544 | Msa0964600:intron | 60.0% |
| GCAGCAGCGCGTACCCTCAA+TGG | + | chr6_3:91392740-91392759 | None:intergenic | 65.0% | |
| !! | GGTGGTGGGATTGGACCCCT+TGG | + | chr6_3:91393463-91393482 | None:intergenic | 65.0% |
| !! | CCGCATGTGGGTGGTGGGAT+TGG | + | chr6_3:91393472-91393491 | None:intergenic | 65.0% |
| ATCCCACCACCCACATGCGG+GGG | - | chr6_3:91393472-91393491 | Msa0964600:intron | 65.0% | |
| TCCCACCACCCACATGCGGG+GGG | - | chr6_3:91393473-91393492 | Msa0964600:intron | 70.0% | |
| ACCCCCCGCATGTGGGTGGT+GGG | + | chr6_3:91393477-91393496 | None:intergenic | 70.0% | |
| ACCACCCACATGCGGGGGGT+GGG | - | chr6_3:91393477-91393496 | Msa0964600:intron | 70.0% | |
| AACCCCCACCCCCCGCATGT+GGG | + | chr6_3:91393484-91393503 | None:intergenic | 70.0% | |
| GGTACGCGCTGCTGCCCCTG+AGG | - | chr6_3:91392745-91392764 | Msa0964600:intron | 75.0% | |
| ACGCGCTGCTGCCCCTGAGG+AGG | - | chr6_3:91392748-91392767 | Msa0964600:intron | 75.0% | |
| CACCCCCCGCATGTGGGTGG+TGG | + | chr6_3:91393478-91393497 | None:intergenic | 75.0% | |
| CACCACCCACATGCGGGGGG+TGG | - | chr6_3:91393476-91393495 | Msa0964600:intron | 75.0% | |
| CCACCCACATGCGGGGGGTG+GGG | - | chr6_3:91393478-91393497 | Msa0964600:intron | 75.0% | |
| CACCCACATGCGGGGGGTGG+GGG | - | chr6_3:91393479-91393498 | Msa0964600:intron | 75.0% | |
| CAACCCCCACCCCCCGCATG+TGG | + | chr6_3:91393485-91393504 | None:intergenic | 75.0% | |
| ! | CCCCACCCCCCGCATGTGGG+TGG | + | chr6_3:91393481-91393500 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 91389634 | 91394910 | 91389634 | ID=Msa0964600;Name=Msa0964600 |
| chr6_3 | mRNA | 91389634 | 91394910 | 91389634 | ID=Msa0964600-mRNA-1;Parent=Msa0964600;Name=Msa0964600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=101|0.75|0.6|1|0.75|0.6|5|482|349 |
| chr6_3 | exon | 91389634 | 91390559 | 91389634 | ID=Msa0964600-mRNA-1:exon:16545;Parent=Msa0964600-mRNA-1 |
| chr6_3 | exon | 91391691 | 91391858 | 91391691 | ID=Msa0964600-mRNA-1:exon:16544;Parent=Msa0964600-mRNA-1 |
| chr6_3 | exon | 91391951 | 91392138 | 91391951 | ID=Msa0964600-mRNA-1:exon:16543;Parent=Msa0964600-mRNA-1 |
| chr6_3 | exon | 91394476 | 91394591 | 91394476 | ID=Msa0964600-mRNA-1:exon:16542;Parent=Msa0964600-mRNA-1 |
| chr6_3 | exon | 91394676 | 91394910 | 91394676 | ID=Msa0964600-mRNA-1:exon:16541;Parent=Msa0964600-mRNA-1 |
| chr6_3 | five_prime_UTR | 91394810 | 91394910 | 91394810 | ID=Msa0964600-mRNA-1:five_prime_utr;Parent=Msa0964600-mRNA-1 |
| chr6_3 | CDS | 91394676 | 91394809 | 91394676 | ID=Msa0964600-mRNA-1:cds;Parent=Msa0964600-mRNA-1 |
| chr6_3 | CDS | 91394476 | 91394591 | 91394476 | ID=Msa0964600-mRNA-1:cds;Parent=Msa0964600-mRNA-1 |
| chr6_3 | CDS | 91391951 | 91392138 | 91391951 | ID=Msa0964600-mRNA-1:cds;Parent=Msa0964600-mRNA-1 |
| chr6_3 | CDS | 91391691 | 91391858 | 91391691 | ID=Msa0964600-mRNA-1:cds;Parent=Msa0964600-mRNA-1 |
| chr6_3 | CDS | 91390116 | 91390559 | 91390116 | ID=Msa0964600-mRNA-1:cds;Parent=Msa0964600-mRNA-1 |
| chr6_3 | three_prime_UTR | 91389634 | 91390115 | 91389634 | ID=Msa0964600-mRNA-1:three_prime_utr;Parent=Msa0964600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
