AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0900380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900380 MtrunA17_Chr6g0486611 96.119 438 3 1 1 438 1 424 0.0 868
Msa0900380 MtrunA17_Chr8g0390211 77.273 440 82 5 1 438 1 424 0.0 689
Msa0900380 MtrunA17_Chr3g0140071 62.470 421 132 6 1 412 1 404 0.0 514
Msa0900380 MtrunA17_Chr4g0071031 70.317 347 88 2 1 347 1 332 0.0 512
Msa0900380 MtrunA17_Chr2g0329981 61.432 433 137 8 1 425 1 411 1.67e-180 512
Msa0900380 MtrunA17_Chr1g0166821 72.754 334 74 3 1 331 2 321 5.32e-180 510
Msa0900380 MtrunA17_Chr1g0183631 73.292 322 72 1 1 322 1 308 2.55e-175 498
Msa0900380 MtrunA17_Chr8g0342821 74.760 313 64 2 1 313 1 298 3.15e-175 498
Msa0900380 MtrunA17_Chr1g0187571 69.851 335 84 3 1 332 2 322 4.49e-173 493
Msa0900380 MtrunA17_Chr1g0146151 58.565 432 149 6 1 425 1 409 5.38e-173 491
Msa0900380 MtrunA17_Chr7g0261501 72.990 311 70 1 1 311 1 297 5.22e-171 488
Msa0900380 MtrunA17_Chr2g0299661 70.607 313 78 1 1 313 1 299 7.55e-168 479
Msa0900380 MtrunA17_Chr1g0167261 66.242 314 90 2 1 312 2 301 8.68e-151 432
Msa0900380 MtrunA17_Chr7g0214531 34.708 291 173 6 9 292 37 317 1.27e-53 188
Msa0900380 MtrunA17_Chr1g0213321 35.052 291 157 5 9 287 119 389 5.05e-53 188
Msa0900380 MtrunA17_Chr1g0146301 34.364 291 158 6 9 287 124 393 3.94e-51 183
Msa0900380 MtrunA17_Chr7g0253211 35.714 294 161 7 9 290 324 601 1.71e-50 183
Msa0900380 MtrunA17_Chr3g0140431 34.021 291 159 6 9 287 38 307 2.11e-50 179
Msa0900380 MtrunA17_Chr8g0340491 33.103 290 170 6 9 287 128 404 1.49e-45 167
Msa0900380 MtrunA17_Chr7g0245031 26.378 254 151 6 3 250 142 365 1.88e-13 72.0
Msa0900380 MtrunA17_Chr8g0387671 29.412 221 134 7 9 227 66 266 1.16e-12 69.7
Msa0900380 MtrunA17_Chr4g0059121 23.759 282 185 8 11 289 60 314 5.67e-12 67.0
Msa0900380 MtrunA17_Chr1g0201571 26.316 228 131 7 6 223 123 323 6.37e-12 67.4
Msa0900380 MtrunA17_Chr3g0131861 27.931 290 160 11 6 278 94 351 6.80e-12 67.4
Msa0900380 MtrunA17_Chr3g0107051 28.807 243 135 11 5 236 17 232 1.04e-11 66.6
Msa0900380 MtrunA17_Chr5g0428031 26.667 240 145 8 8 241 8 222 1.63e-11 65.9
Msa0900380 MtrunA17_Chr4g0059951 28.659 164 106 4 5 167 69 222 1.80e-11 66.2
Msa0900380 MtrunA17_Chr4g0075541 29.412 170 103 4 114 283 185 337 2.64e-11 65.1
Msa0900380 MtrunA17_Chr3g0127571 27.313 227 141 7 6 227 135 342 4.86e-11 64.7
Msa0900380 MtrunA17_Chr5g0397101 26.818 220 141 5 9 227 67 267 5.08e-11 64.7
Msa0900380 MtrunA17_Chr1g0200601 27.039 233 149 7 7 237 28 241 5.15e-11 64.7
Msa0900380 MtrunA17_Chr3g0093391 27.660 235 131 9 7 223 21 234 5.17e-11 64.7
Msa0900380 MtrunA17_Chr8g0374701 27.155 232 138 9 6 227 122 332 5.22e-11 64.7
Msa0900380 MtrunA17_Chr6g0455651 27.174 276 164 9 15 281 122 369 5.48e-11 64.3
Msa0900380 MtrunA17_Chr2g0304111 28.195 266 143 13 8 256 22 256 6.05e-11 64.3
Msa0900380 MtrunA17_Chr4g0045261 26.339 224 143 6 8 227 136 341 6.24e-11 64.3
Msa0900380 MtrunA17_Chr3g0098951 25.738 237 153 6 9 244 84 298 6.71e-11 64.3
Msa0900380 MtrunA17_Chr7g0242561 25.225 222 146 6 7 227 54 256 6.75e-11 64.3
Msa0900380 MtrunA17_Chr5g0444171 24.895 237 155 7 9 244 92 306 7.49e-11 63.9
Msa0900380 MtrunA17_Chr7g0276111 26.549 226 144 6 6 227 141 348 8.09e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900380 AT4G28880.3 68.591 433 107 5 1 424 1 413 0.0 603
Msa0900380 AT4G28880.2 68.591 433 107 5 1 424 1 413 0.0 603
Msa0900380 AT4G28880.1 68.591 433 107 5 1 424 1 413 0.0 603
Msa0900380 AT4G28880.4 68.591 433 107 5 1 424 1 413 0.0 603
Msa0900380 AT4G28860.1 69.495 436 102 8 1 430 1 411 0.0 597
Msa0900380 AT4G28860.2 76.393 377 68 4 1 372 1 361 0.0 592
Msa0900380 AT4G26100.1 69.322 339 89 2 1 339 1 324 3.06e-176 501
Msa0900380 AT5G57015.1 69.162 334 89 1 1 334 1 320 3.39e-174 495
Msa0900380 AT1G72710.1 66.852 359 102 4 1 359 1 342 2.08e-173 494
Msa0900380 AT2G19470.1 66.000 350 95 4 1 341 1 335 6.66e-172 489
Msa0900380 AT1G03930.1 72.026 311 73 1 1 311 1 297 2.68e-171 489
Msa0900380 AT4G28540.1 72.436 312 72 1 1 312 5 302 3.97e-171 489
Msa0900380 AT5G44100.1 66.860 344 89 2 1 333 1 330 9.66e-171 488
Msa0900380 AT5G44100.2 66.860 344 89 2 1 333 1 330 9.66e-171 488
Msa0900380 AT3G23340.1 69.939 326 83 2 1 326 1 311 2.57e-170 485
Msa0900380 AT5G43320.1 70.740 311 77 1 1 311 1 297 1.03e-166 478
Msa0900380 AT4G14340.1 68.712 326 87 2 1 326 7 317 5.84e-166 475
Msa0900380 AT1G04440.1 66.471 340 92 3 1 332 1 326 1.50e-165 474
Msa0900380 AT4G14340.2 68.712 326 87 2 1 326 7 317 1.87e-165 470
Msa0900380 AT5G43320.2 70.740 311 77 1 1 311 1 297 1.05e-164 468
Msa0900380 AT5G43320.3 70.740 311 77 1 1 311 1 297 1.05e-164 468
Msa0900380 AT3G23340.2 66.564 326 80 3 1 326 1 297 2.04e-157 452
Msa0900380 AT4G08800.1 59.740 308 78 3 1 308 1 262 2.69e-131 380
Msa0900380 AT2G25760.2 35.690 297 156 5 9 287 107 386 3.70e-55 194
Msa0900380 AT3G03940.1 36.610 295 159 7 9 291 140 418 5.52e-53 189
Msa0900380 AT2G25760.1 35.354 297 154 6 9 287 107 383 5.95e-53 188
Msa0900380 AT3G13670.1 33.555 301 163 6 9 292 137 417 1.88e-51 184
Msa0900380 AT5G18190.2 35.932 295 161 7 9 291 130 408 1.93e-51 184
Msa0900380 AT5G18190.1 35.932 295 161 7 9 291 130 408 1.93e-51 184
Msa0900380 AT3G06030.1 25.333 225 145 6 8 227 67 273 1.05e-12 70.5
Msa0900380 AT4G31170.7 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT4G31170.6 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT4G31170.5 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT4G31170.1 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT4G31170.2 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT4G31170.3 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT4G31170.8 27.313 227 143 7 8 232 130 336 1.23e-12 69.7
Msa0900380 AT3G23000.1 30.000 240 143 10 3 238 19 237 1.46e-12 69.7
Msa0900380 AT4G23650.1 27.727 220 139 5 9 227 78 278 4.07e-12 68.6
Msa0900380 AT2G41860.1 26.786 224 144 6 5 227 50 254 5.66e-12 68.2
Msa0900380 AT2G41860.2 26.786 224 144 6 5 227 50 254 9.05e-12 67.4
Msa0900380 AT4G24400.1 28.099 242 139 9 8 241 8 222 9.20e-12 67.0
Msa0900380 AT3G50530.1 26.316 228 144 8 5 227 144 352 1.01e-11 67.4
Msa0900380 AT4G24400.2 28.099 242 139 9 8 241 8 222 1.12e-11 66.6
Msa0900380 AT1G74740.1 25.893 224 146 6 5 227 55 259 1.45e-11 66.6
Msa0900380 AT3G20410.2 26.582 237 151 7 9 244 91 305 1.95e-11 66.2
Msa0900380 AT3G20410.1 26.582 237 151 7 9 244 91 305 1.95e-11 66.2
Msa0900380 AT1G74330.3 22.520 373 218 11 7 354 119 445 2.35e-11 66.2
Msa0900380 AT1G74330.2 22.520 373 218 11 7 354 119 445 3.03e-11 65.9
Msa0900380 AT1G74330.1 22.520 373 218 11 7 354 119 445 3.67e-11 65.9
Msa0900380 AT4G19110.2 23.922 255 149 11 7 252 2 220 4.07e-11 65.1
Msa0900380 AT3G49370.1 28.000 225 138 7 8 227 141 346 5.42e-11 65.1
Msa0900380 AT1G18890.1 26.638 229 138 7 5 227 59 263 5.81e-11 65.1
Msa0900380 AT4G19110.1 23.922 255 149 11 7 252 2 220 6.13e-11 64.7
Msa0900380 AT5G21326.1 27.426 237 138 10 1 229 6 216 6.47e-11 64.3
Msa0900380 AT2G46700.1 27.313 227 141 7 6 227 140 347 6.52e-11 64.7

Find 176 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTATATGTAATTGATTT+TGG 0.199306 6_1:+95848637 Msa0900380:intron
ATTCTTGAGGCGCCTATTTC+GGG 0.201735 6_1:+95849479 Msa0900380:CDS
AAACATGGAGCTGCATATTA+TGG 0.224614 6_1:+95850920 Msa0900380:three_prime_UTR
GATTCTTGAGGCGCCTATTT+CGG 0.235818 6_1:+95849478 Msa0900380:CDS
GCAAAACTATTGCATTTATA+TGG 0.237509 6_1:+95852034 Msa0900380:three_prime_UTR
TTTGATCAGCGACCTGATTA+TGG 0.244829 6_1:+95849456 Msa0900380:CDS
CTTGAGGTTCACTGTAATTC+TGG 0.249132 6_1:-95846917 None:intergenic
TGAGAAGAAACCATTATTTC+GGG 0.260438 6_1:-95851528 None:intergenic
TTAATTTGTATTGTCATTCT+TGG 0.284570 6_1:+95851838 Msa0900380:three_prime_UTR
TTGAGAAGAAACCATTATTT+CGG 0.289101 6_1:-95851529 None:intergenic
GAGCAAATAACTCCCGAAAT+AGG 0.299908 6_1:-95849491 None:intergenic
TGAATCAGATGCAAAAGTTT+TGG 0.301195 6_1:+95851495 Msa0900380:three_prime_UTR
GCTTCTTTGTCGCAGCCTTT+AGG 0.310608 6_1:-95849241 None:intergenic
AGAATGCACATACTCTATTC+TGG 0.314521 6_1:-95848424 None:intergenic
ACAAAGCCGCCGGGATGATT+TGG 0.324631 6_1:+95849050 Msa0900380:CDS
ACCTCAAGATACTGTGATTC+TGG 0.325833 6_1:+95846932 Msa0900380:CDS
AATTTGATTATGTATTTGAT+TGG 0.332820 6_1:+95850007 Msa0900380:CDS
CAAGATGACTCCCGAAATAA+TGG 0.332847 6_1:+95851518 Msa0900380:three_prime_UTR
TTGGGCTTGCAAAACGATAT+CGG 0.336257 6_1:+95848656 Msa0900380:CDS
TGCTAAATAAATGCTGAATA+TGG 0.339538 6_1:+95850757 Msa0900380:exon
TACCGCCTGATGATTTAAAC+TGG 0.353819 6_1:-95850373 None:intergenic
TCAGACAATGCCGCTTCTTC+CGG 0.363687 6_1:+95850341 Msa0900380:CDS
GAATTCTTTCTCCCTTTCAA+TGG 0.365306 6_1:-95852228 None:intergenic
TCGAAAGAGTGTGAAGTAGA+AGG 0.370593 6_1:-95850611 None:intergenic
GTGCTTGTTATGGATTTGTT+GGG 0.373490 6_1:+95848149 Msa0900380:CDS
GGAAGACAATGTGCTTGTTA+TGG 0.374985 6_1:+95848139 Msa0900380:CDS
AAGTTCCAGTTTAAATCATC+AGG 0.379006 6_1:+95850368 Msa0900380:CDS
GCAAGCTGCAATACTCATCT+TGG 0.385425 6_1:+95848936 Msa0900380:CDS
TAATTTGTATTGTCATTCTT+GGG 0.389870 6_1:+95851839 Msa0900380:three_prime_UTR
TGCTCCCTTGCCCATGCCTA+TGG 0.400254 6_1:-95850685 None:intergenic
GCCCGATTGTTGCTCGCTAC+AGG 0.409927 6_1:-95850176 None:intergenic
AACATGGAGCTGCATATTAT+GGG 0.410482 6_1:+95850921 Msa0900380:three_prime_UTR
AATGACAATACAAATTAATC+TGG 0.413475 6_1:-95851833 None:intergenic
TGTGCTTGTTATGGATTTGT+TGG 0.413619 6_1:+95848148 Msa0900380:CDS
TTCCTGTAGCGAGCAACAAT+CGG 0.414919 6_1:+95850174 Msa0900380:CDS
TTGGCTTCTGAGAATCATCT+TGG 0.415195 6_1:+95850401 Msa0900380:CDS
GGGCAGATGCTTACCTCAAT+AGG 0.418445 6_1:-95849302 None:intergenic
TTTCTCCCTTTCAATGGATG+TGG 0.419794 6_1:-95852222 None:intergenic
CGCCTCAAGAATCCATAATC+AGG 0.420387 6_1:-95849468 None:intergenic
TAGAAAGTTCAAAACCTGTA+TGG 0.426001 6_1:-95848703 None:intergenic
TTGAAAGGGAGAAAGAATTC+AGG 0.426530 6_1:+95852231 Msa0900380:three_prime_UTR
ATCGGTGATAAATTCAAGTT+AGG 0.432066 6_1:+95846615 Msa0900380:CDS
CCGTCAATGCGGATAATACT+AGG 0.432268 6_1:+95852453 Msa0900380:three_prime_UTR
CGGGATGATTTGGAGTCTCT+TGG 0.432361 6_1:+95849060 Msa0900380:CDS
TGGGCTTGCAAAACGATATC+GGG 0.435539 6_1:+95848657 Msa0900380:CDS
ATTTCGGTCGTCAAGGGTTG+AGG 0.435556 6_1:-95852349 None:intergenic
TGGGATGTGGCGATTGGTTG+TGG 0.437079 6_1:-95848683 None:intergenic
GGGCAAGGGAGCAGTAAAAT+TGG 0.439859 6_1:+95850695 Msa0900380:CDS
GAGGATCATATGTATGAAGA+AGG 0.443268 6_1:-95852330 None:intergenic
CGAGTAATATCTCAGATTCA+TGG 0.446754 6_1:+95846584 Msa0900380:exon
CACCACTCCATCTTATGCTT+GGG 0.449410 6_1:-95848109 None:intergenic
ATAGAGTATGTGCATTCTAA+AGG 0.458276 6_1:+95848429 Msa0900380:CDS
CTTGATGTTGGCTGATCAAA+TGG 0.461622 6_1:+95848229 Msa0900380:CDS
AGTAGCCACCGCAATGGAAA+AGG 0.463846 6_1:-95846506 None:intergenic
TACTTACGGATATGTGAGGC+TGG 0.464438 6_1:-95850068 None:intergenic
TCATGAAAGATGGAAATATG+AGG 0.469388 6_1:+95852281 Msa0900380:three_prime_UTR
CTCCATGTTTGTATGCATGC+AGG 0.470013 6_1:-95850907 None:intergenic
ACATTCATCCGACTACTTGA+AGG 0.474136 6_1:-95850719 None:intergenic
GAATTCAACACGCGGACGGA+TGG 0.475714 6_1:-95846466 None:intergenic
GGTTCAAGCACCAACCTTGT+TGG 0.476423 6_1:-95850220 None:intergenic
CCTCCATAGGGATATAAAAC+CGG 0.477649 6_1:+95848455 Msa0900380:CDS
ATTCTAAAGGGTTCCTCCAT+AGG 0.479961 6_1:+95848442 Msa0900380:CDS
TGCAATACTCATCTTGGGAT+TGG 0.480350 6_1:+95848942 Msa0900380:CDS
TCTGTTGTGTTGCAGGAGAC+TGG 0.481529 6_1:+95847490 Msa0900380:intron
CCTAGTATTATCCGCATTGA+CGG 0.483380 6_1:-95852453 None:intergenic
CAAGCTGCAATACTCATCTT+GGG 0.484146 6_1:+95848937 Msa0900380:CDS
AAGCTCTATAATATTCTTCA+AGG 0.485336 6_1:+95847547 Msa0900380:CDS
CTAGTATTATCCGCATTGAC+GGG 0.487663 6_1:-95852452 None:intergenic
TAAGATGGAGTGGTGTAGAC+GGG 0.495163 6_1:+95848117 Msa0900380:CDS
AGTGGACGCGGAAGGCTTCA+AGG 0.495368 6_1:-95850651 None:intergenic
ACACCACTCCATCTTATGCT+TGG 0.495604 6_1:-95848110 None:intergenic
TTGTTGGTTATCAATATCCA+TGG 0.497091 6_1:-95850204 None:intergenic
AGGTCAAAGAATGGCAGTAA+TGG 0.499416 6_1:-95849434 None:intergenic
TCCTGTAGCGAGCAACAATC+GGG 0.501671 6_1:+95850175 Msa0900380:CDS
TTGTTGCTCGCTACAGGAAC+CGG 0.502364 6_1:-95850170 None:intergenic
GCTTGCATAACGCGCAGTCC+CGG 0.502927 6_1:-95848919 None:intergenic
ATGTAGAGTAAATGACATCT+AGG 0.503049 6_1:+95852124 Msa0900380:three_prime_UTR
TAGAGTATGTGCATTCTAAA+GGG 0.503360 6_1:+95848430 Msa0900380:CDS
CCTTCCCTGGCAAAACCTAA+AGG 0.504434 6_1:+95849226 Msa0900380:CDS
TGCGGATAATACTAGGTCAC+CGG 0.506596 6_1:+95852460 Msa0900380:three_prime_UTR
TAATTGTGTTTAGCCTTCCC+TGG 0.508361 6_1:+95849213 Msa0900380:intron
CTAAGTAATATCTCTTCATA+CGG 0.509034 6_1:+95852159 Msa0900380:three_prime_UTR
AACTAAAATCTCAATGTCAC+AGG 0.515231 6_1:-95852427 None:intergenic
AAATGTCCACATCCATTGAA+AGG 0.515421 6_1:+95852216 Msa0900380:three_prime_UTR
CCTCAAAACTGTCTTGATGT+TGG 0.516363 6_1:+95848217 Msa0900380:CDS
GAAAGTATCAACTCCTATTG+AGG 0.519371 6_1:+95849289 Msa0900380:CDS
ACTTGGTCGGAAGGCAAACC+TGG 0.520669 6_1:+95848494 Msa0900380:CDS
TTAGGACGCAAGATCGGAAG+TGG 0.521534 6_1:+95846633 Msa0900380:CDS
TTTCATTCTTTAACCCATGT+AGG 0.521760 6_1:-95852100 None:intergenic
AATTCTTATTTCGGTCGTCA+AGG 0.522308 6_1:-95852356 None:intergenic
TTCTAAAGGGTTCCTCCATA+GGG 0.522924 6_1:+95848443 Msa0900380:CDS
CATGAAAGATGGAAATATGA+GGG 0.523975 6_1:+95852282 Msa0900380:three_prime_UTR
AAGATCGGAAGTGGATCCTT+CGG 0.526716 6_1:+95846642 Msa0900380:CDS
AGAAAGTTCAAAACCTGTAT+GGG 0.527700 6_1:-95848702 None:intergenic
CGGGAGTTATTTGCTCGAGA+AGG 0.530876 6_1:+95849498 Msa0900380:CDS
GTGGTATCCCAAGCATAAGA+TGG 0.531050 6_1:+95848102 Msa0900380:CDS
TCAACACGCGGACGGATGGA+CGG 0.532198 6_1:-95846462 None:intergenic
ATGGTGGAGATCATGAAAGA+TGG 0.532717 6_1:+95852271 Msa0900380:three_prime_UTR
CCAATCGCCACATCCCATAC+AGG 0.535975 6_1:+95848689 Msa0900380:CDS
CGAAAGAGTGTGAAGTAGAA+GGG 0.539972 6_1:-95850610 None:intergenic
GATAACTTTCTCATGGGACT+TGG 0.540360 6_1:+95848477 Msa0900380:CDS
AAGTACGAAGCAAACTCTAC+AGG 0.544026 6_1:-95849411 None:intergenic
ATATCTCTTCATACGGGCGA+TGG 0.546786 6_1:+95852166 Msa0900380:three_prime_UTR
CGAAGGTAGTATAAATAAAG+GGG 0.548767 6_1:+95846395 None:intergenic
CCTATGGTTTGCAGCTTCAG+TGG 0.548768 6_1:-95850669 None:intergenic
ATGGATCCTCTCGTGTCATG+AGG 0.549642 6_1:+95852185 Msa0900380:three_prime_UTR
TCCTTCGGTGAAATCTATCT+CGG 0.549980 6_1:+95846657 Msa0900380:CDS
TTCAAGTTAGGACGCAAGAT+CGG 0.551617 6_1:+95846627 Msa0900380:CDS
TTTGTTGGGGCCTAGTCTTG+AGG 0.553272 6_1:+95848163 Msa0900380:CDS
TTCAAAACCTGTATGGGATG+TGG 0.553955 6_1:-95848696 None:intergenic
TTAGCTTCATAAAGCAATTG+TGG 0.553963 6_1:-95847526 None:intergenic
CAACAATCGGGCAATGCCCA+TGG 0.556507 6_1:+95850187 Msa0900380:CDS
AAACCGGATAACTTTCTCAT+GGG 0.561522 6_1:+95848471 Msa0900380:CDS
AGGATCATATGTATGAAGAA+GGG 0.561771 6_1:-95852329 None:intergenic
TCCATGTTTGTATGCATGCA+GGG 0.561985 6_1:-95850906 None:intergenic
ATTCTTATTTCGGTCGTCAA+GGG 0.562360 6_1:-95852355 None:intergenic
AAATGAATTCAACACGCGGA+CGG 0.563130 6_1:-95846470 None:intergenic
GAAGAGAGTAGCCACCGCAA+TGG 0.564031 6_1:-95846512 None:intergenic
GCAAACCATAGGCATGGGCA+AGG 0.564524 6_1:+95850680 Msa0900380:CDS
TCTCATGGGACTTGGTCGGA+AGG 0.565028 6_1:+95848485 Msa0900380:CDS
GAAGCTGCAAACCATAGGCA+TGG 0.565598 6_1:+95850674 Msa0900380:CDS
AGATTCATGGATCGAATCAT+CGG 0.566316 6_1:+95846597 Msa0900380:exon
GCAGCTTCAGTGGACGCGGA+AGG 0.566995 6_1:-95850659 None:intergenic
AATGTCCACATCCATTGAAA+GGG 0.567328 6_1:+95852217 Msa0900380:three_prime_UTR
ATAAGATGGAGTGGTGTAGA+CGG 0.572946 6_1:+95848116 Msa0900380:CDS
ATAATCAGGTCGCTGATCAA+AGG 0.572957 6_1:-95849454 None:intergenic
AAAACCGGATAACTTTCTCA+TGG 0.575825 6_1:+95848470 Msa0900380:CDS
CCACTGAAGCTGCAAACCAT+AGG 0.576164 6_1:+95850669 Msa0900380:CDS
AGTCCCATGAGAAAGTTATC+CGG 0.577140 6_1:-95848474 None:intergenic
TGCTTGTTATGGATTTGTTG+GGG 0.580128 6_1:+95848150 Msa0900380:CDS
GTTTGCAGCTTCAGTGGACG+CGG 0.581258 6_1:-95850663 None:intergenic
GGATCATATGTATGAAGAAG+GGG 0.581680 6_1:-95852328 None:intergenic
GCTGATCAAAGGTCAAAGAA+TGG 0.590024 6_1:-95849443 None:intergenic
TGGATCCTCTCGTGTCATGA+GGG 0.590161 6_1:+95852186 Msa0900380:three_prime_UTR
ACTTTCTCATGGGACTTGGT+CGG 0.592057 6_1:+95848481 Msa0900380:CDS
ACGAAGCAAACTCTACAGGA+TGG 0.592572 6_1:-95849407 None:intergenic
GGTTTCTTCTCAAACATCAA+AGG 0.593041 6_1:+95851539 Msa0900380:three_prime_UTR
TAAGTAATATCTCTTCATAC+GGG 0.594223 6_1:+95852160 Msa0900380:three_prime_UTR
AAGCTGCAAACCATAGGCAT+GGG 0.597512 6_1:+95850675 Msa0900380:CDS
ATTTGTAGAACAAAGCCGCC+GGG 0.602617 6_1:+95849041 Msa0900380:intron
CCTGTATGGGATGTGGCGAT+TGG 0.602796 6_1:-95848689 None:intergenic
TGTTGGTTATCAATATCCAT+GGG 0.604040 6_1:-95850203 None:intergenic
GAACTTAACACCGGAAGAAG+CGG 0.606399 6_1:-95850351 None:intergenic
AAATTGGTCCTTCAAGTAGT+CGG 0.607497 6_1:+95850711 Msa0900380:CDS
ACTCTTTCGAAGCATCAAGA+AGG 0.609101 6_1:+95850624 Msa0900380:CDS
AAGAAACATACACTTCAACT+TGG 0.609317 6_1:-95852539 None:intergenic
CGAAGCAAACTCTACAGGAT+GGG 0.611082 6_1:-95849406 None:intergenic
GCGGATAATACTAGGTCACC+GGG 0.617014 6_1:+95852461 Msa0900380:three_prime_UTR
ATCCCAAGCATAAGATGGAG+TGG 0.620505 6_1:+95848107 Msa0900380:CDS
ACCGAGATAGATTTCACCGA+AGG 0.620573 6_1:-95846658 None:intergenic
CAAGAGACTCCAAATCATCC+CGG 0.622494 6_1:-95849059 None:intergenic
TTTAAACTGGAACTTAACAC+CGG 0.623764 6_1:-95850360 None:intergenic
TAGCACATTAGTAGTCTCCA+CGG 0.624278 6_1:-95850966 None:intergenic
TCCCTGCATGCATACAAACA+TGG 0.628565 6_1:+95850905 Msa0900380:three_prime_UTR
TTCCAGTTTAAATCATCAGG+CGG 0.630569 6_1:+95850371 Msa0900380:CDS
ACCAGAATCACAGTATCTTG+AGG 0.632952 6_1:-95846933 None:intergenic
ACTTACGGATATGTGAGGCT+GGG 0.634330 6_1:-95850067 None:intergenic
CTCTATAATATTCTTCAAGG+AGG 0.636528 6_1:+95847550 Msa0900380:CDS
TATTTGTAGAACAAAGCCGC+CGG 0.642128 6_1:+95849040 Msa0900380:intron
AGCACATTAGTAGTCTCCAC+GGG 0.644849 6_1:-95850965 None:intergenic
CAAACCATAGGCATGGGCAA+GGG 0.646006 6_1:+95850681 Msa0900380:CDS
CTTGACAGCAACGATCTCGA+AGG 0.646641 6_1:-95846795 None:intergenic
AGAAGAACTAGCACAAGACC+CGG 0.647326 6_1:-95852479 None:intergenic
TAGTATTATCCGCATTGACG+GGG 0.650990 6_1:-95852451 None:intergenic
AATATACTTACGGATATGTG+AGG 0.660737 6_1:-95850072 None:intergenic
ACATGGAGCTGCATATTATG+GGG 0.661231 6_1:+95850922 Msa0900380:three_prime_UTR
AAGATGGAGTGGTGTAGACG+GGG 0.662328 6_1:+95848118 Msa0900380:CDS
GAGACTACTAATGTGCTACA+AGG 0.662601 6_1:+95850971 Msa0900380:three_prime_UTR
GACCTGATTATGGATTCTTG+AGG 0.667363 6_1:+95849466 Msa0900380:CDS
TAGAGTAAATGACATCTAGG+TGG 0.693050 6_1:+95852127 Msa0900380:three_prime_UTR
GAATGCCATACCTTCCTCTG+AGG 0.704652 6_1:-95849101 None:intergenic
ATAGACCCTCATGACACGAG+AGG 0.706477 6_1:-95852191 None:intergenic
ATGGATATTGATAACCAACA+AGG 0.718739 6_1:+95850206 Msa0900380:CDS
TTATACAGGGGATGTCTCAG+CGG 0.724472 6_1:+95850307 Msa0900380:intron
GAGACTCCAAATCATCCCGG+CGG 0.750112 6_1:-95849056 None:intergenic
AATGAAATGAATTCAACACG+CGG 0.778440 6_1:-95846474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTATTATTATTAT+TGG + chr6_1:95846712-95846731 Msa0900380:intron 0.0%
!!! ACATGTTTTTTTATTTTATT+TGG + chr6_1:95848391-95848410 Msa0900380:intron 10.0%
!!! CATGTTTTTTTATTTTATTT+GGG + chr6_1:95848392-95848411 Msa0900380:intron 10.0%
!!! ATTCATTAAGTATTAATTTT+GGG - chr6_1:95848870-95848889 None:intergenic 10.0%
!!! AATTCATTAAGTATTAATTT+TGG - chr6_1:95848871-95848890 None:intergenic 10.0%
!!! AAAAAATTAATATTTTCAGA+TGG - chr6_1:95850140-95850159 None:intergenic 10.0%
!! ATATACAACATATTAAAATT+TGG - chr6_1:95850559-95850578 None:intergenic 10.0%
!!! ATATTATTTTTGTAGATTTT+TGG + chr6_1:95850575-95850594 Msa0900380:intron 10.0%
!!! AAATTTGTTGAAATTATGTT+TGG - chr6_1:95847112-95847131 None:intergenic 15.0%
!!! TCAGTAAAAATACAATTTTT+AGG + chr6_1:95847701-95847720 Msa0900380:intron 15.0%
!!! CAGTAAAAATACAATTTTTA+GGG + chr6_1:95847702-95847721 Msa0900380:intron 15.0%
!!! TTTTTTTATGAATGAAGTTT+AGG - chr6_1:95849801-95849820 None:intergenic 15.0%
!! ATAAGAAAATTGATGTTAAA+TGG + chr6_1:95849840-95849859 Msa0900380:intron 15.0%
!! TAAGAAAATTGATGTTAAAT+GGG + chr6_1:95849841-95849860 Msa0900380:intron 15.0%
!! AATTTGATTATGTATTTGAT+TGG + chr6_1:95850007-95850026 Msa0900380:CDS 15.0%
!!! GGTTTAAATTTTGTTATTAA+AGG + chr6_1:95851661-95851680 Msa0900380:intron 15.0%
!!! ATCAAAAACAATTCTTATTT+CGG - chr6_1:95852368-95852387 None:intergenic 15.0%
!!! TAGTGTATGTTTTTTTATCA+CGG + chr6_1:95846886-95846905 Msa0900380:intron 20.0%
!! ACAACAATGAAAATAATGAA+AGG - chr6_1:95847596-95847615 None:intergenic 20.0%
!!! TTTCATTATTTTCATTGTTG+TGG + chr6_1:95847595-95847614 Msa0900380:intron 20.0%
!!! TTCATTATTTTCATTGTTGT+GGG + chr6_1:95847596-95847615 Msa0900380:intron 20.0%
!!! TCATCTAAAATGTCAAATAT+CGG - chr6_1:95847754-95847773 None:intergenic 20.0%
!!! AGGTATATGTAATTGATTTT+GGG + chr6_1:95848638-95848657 Msa0900380:intron 20.0%
!!! GAATTAACAATGGATTATAA+TGG - chr6_1:95848729-95848748 None:intergenic 20.0%
!! TAAAGTGAATGAATTAACAA+TGG - chr6_1:95848739-95848758 None:intergenic 20.0%
!! GTTAATGTTGAAAATTTCTT+CGG + chr6_1:95848790-95848809 Msa0900380:intron 20.0%
!!! TTAATTTTGGGTATTTCTAA+GGG - chr6_1:95848858-95848877 None:intergenic 20.0%
!!! ATTAATTTTGGGTATTTCTA+AGG - chr6_1:95848859-95848878 None:intergenic 20.0%
!!! TTAATGAATTTTACAACACA+GGG + chr6_1:95848881-95848900 Msa0900380:intron 20.0%
!!! AGTATATGTTCTGATTTTTA+CGG + chr6_1:95849183-95849202 Msa0900380:intron 20.0%
!! ATAACAAAGAAATAAGCATT+TGG - chr6_1:95849339-95849358 None:intergenic 20.0%
!!! ATTAATATTTTCAGATGGAT+TGG - chr6_1:95850135-95850154 None:intergenic 20.0%
!! TTATGCAGAAGAAAAAAATA+TGG - chr6_1:95850244-95850263 None:intergenic 20.0%
!! ATCTTGTTCATTATTACTAA+TGG + chr6_1:95850270-95850289 Msa0900380:intron 20.0%
!!! TTGTAGATAATTTTCAAGTA+TGG + chr6_1:95851111-95851130 Msa0900380:intron 20.0%
!!! TTGATAATATTACAAATTGC+AGG + chr6_1:95851260-95851279 Msa0900380:intron 20.0%
!! CCTAAAGTTTAAATATTAAG+AGG - chr6_1:95851643-95851662 None:intergenic 20.0%
!! CCTCTTAATATTTAAACTTT+AGG + chr6_1:95851640-95851659 Msa0900380:intron 20.0%
!!! TATTAAAGGAACATTTTCAA+AGG + chr6_1:95851675-95851694 Msa0900380:intron 20.0%
!! AATGACAATACAAATTAATC+TGG - chr6_1:95851836-95851855 None:intergenic 20.0%
!!! TTAATTTGTATTGTCATTCT+TGG + chr6_1:95851838-95851857 Msa0900380:three_prime_UTR 20.0%
!!! TAATTTGTATTGTCATTCTT+GGG + chr6_1:95851839-95851858 Msa0900380:three_prime_UTR 20.0%
!!! CTCTTTTTTTCTAATCTATA+TGG + chr6_1:95851996-95852015 Msa0900380:three_prime_UTR 20.0%
!!! TTTTTGATCATAATGTTTGT+TGG + chr6_1:95852380-95852399 Msa0900380:three_prime_UTR 20.0%
! AAGAGAATTTGATTGATTGA+AGG - chr6_1:95846689-95846708 None:intergenic 25.0%
! AAACTTTCTTTAAGCATGTT+TGG - chr6_1:95846974-95846993 None:intergenic 25.0%
!!! ATGAACTATATTGATTTGCA+TGG + chr6_1:95847389-95847408 Msa0900380:intron 25.0%
! AAGCTCTATAATATTCTTCA+AGG + chr6_1:95847547-95847566 Msa0900380:CDS 25.0%
! AGAAATGAAATGTGTCAATT+TGG + chr6_1:95847658-95847677 Msa0900380:intron 25.0%
!! GACATTTTAGATGATTGAAT+CGG + chr6_1:95847760-95847779 Msa0900380:intron 25.0%
! TCATTTCTTAAGGATCAAAT+AGG + chr6_1:95847789-95847808 Msa0900380:intron 25.0%
! TGGGATTTAATTGAAAATGT+TGG + chr6_1:95848059-95848078 Msa0900380:intron 25.0%
!!! GGATTTTGTTTAATTAATGC+AGG + chr6_1:95848080-95848099 Msa0900380:intron 25.0%
!!! TTTTGTTTAATTAATGCAGG+TGG + chr6_1:95848083-95848102 Msa0900380:intron 25.0%
! ACTGACTAAAAAACATCATA+AGG - chr6_1:95848289-95848308 None:intergenic 25.0%
! TAACTGTATATTCATTTACC+AGG - chr6_1:95848515-95848534 None:intergenic 25.0%
!!! CAGGTATATGTAATTGATTT+TGG + chr6_1:95848637-95848656 Msa0900380:intron 25.0%
! TTCAACATTAACATCAAATC+CGG - chr6_1:95848782-95848801 None:intergenic 25.0%
!! CTTAATGAATTTTACAACAC+AGG + chr6_1:95848880-95848899 Msa0900380:intron 25.0%
!! AGCATTTGGAATAGTTATAT+GGG - chr6_1:95849325-95849344 None:intergenic 25.0%
!! AAGCATTTGGAATAGTTATA+TGG - chr6_1:95849326-95849345 None:intergenic 25.0%
!! TTTTATGAATGAAGTTTAGG+TGG - chr6_1:95849798-95849817 None:intergenic 25.0%
! CACACACATAAATATACTTA+CGG - chr6_1:95850085-95850104 None:intergenic 25.0%
!!! TAATTTTTTCTTATTGCAGC+CGG + chr6_1:95850151-95850170 Msa0900380:intron 25.0%
! ACAATGATTAATGCTTATAC+AGG + chr6_1:95850293-95850312 Msa0900380:intron 25.0%
! CAATGATTAATGCTTATACA+GGG + chr6_1:95850294-95850313 Msa0900380:intron 25.0%
! AATGATTAATGCTTATACAG+GGG + chr6_1:95850295-95850314 Msa0900380:intron 25.0%
!! TTCACAAGTTTGAAACATAA+AGG - chr6_1:95850517-95850536 None:intergenic 25.0%
! TGCTAAATAAATGCTGAATA+TGG + chr6_1:95850757-95850776 Msa0900380:exon 25.0%
! TGAGTACTATTGTCTATATA+TGG + chr6_1:95850814-95850833 Msa0900380:intron 25.0%
! TGTAAAATTAATGTGTGATG+TGG + chr6_1:95851165-95851184 Msa0900380:intron 25.0%
! TTGAGAAGAAACCATTATTT+CGG - chr6_1:95851532-95851551 None:intergenic 25.0%
!!! TCAAACATTTCTTGATTTGT+AGG + chr6_1:95851791-95851810 Msa0900380:intron 25.0%
!!! TTTACATTTGTTTCTTTTGC+AGG + chr6_1:95851972-95851991 Msa0900380:intron 25.0%
!! TTTTCTAATCTATATGGCAA+TGG + chr6_1:95852002-95852021 Msa0900380:three_prime_UTR 25.0%
! GCAAAACTATTGCATTTATA+TGG + chr6_1:95852034-95852053 Msa0900380:three_prime_UTR 25.0%
!!! ATTTCCTTTTTTAACCTACA+TGG + chr6_1:95852086-95852105 Msa0900380:three_prime_UTR 25.0%
!!! TTTCCTTTTTTAACCTACAT+GGG + chr6_1:95852087-95852106 Msa0900380:three_prime_UTR 25.0%
! CTAAGTAATATCTCTTCATA+CGG + chr6_1:95852159-95852178 Msa0900380:three_prime_UTR 25.0%
! TAAGTAATATCTCTTCATAC+GGG + chr6_1:95852160-95852179 Msa0900380:three_prime_UTR 25.0%
!!! GGAAAAAAAGTGTGTTTTAA+TGG + chr6_1:95852252-95852271 Msa0900380:three_prime_UTR 25.0%
!!! AAAAAAGTGTGTTTTAATGG+TGG + chr6_1:95852255-95852274 Msa0900380:three_prime_UTR 25.0%
AATGAAATGAATTCAACACG+CGG - chr6_1:95846477-95846496 None:intergenic 30.0%
! ATAGTTTTCCTTTTCCATTG+CGG + chr6_1:95846498-95846517 Msa0900380:five_prime_UTR 30.0%
! ATCGGTGATAAATTCAAGTT+AGG + chr6_1:95846615-95846634 Msa0900380:CDS 30.0%
TACCAAACATGACAATAACA+TGG - chr6_1:95847021-95847040 None:intergenic 30.0%
TATTGTCATGTTTGGTATCA+TGG + chr6_1:95847024-95847043 Msa0900380:intron 30.0%
! CAAAAGTATGTTTGGTATCA+CGG - chr6_1:95847439-95847458 None:intergenic 30.0%
! GCTAAAACCAAAAGTATGTT+TGG - chr6_1:95847447-95847466 None:intergenic 30.0%
TTAGCTTCATAAAGCAATTG+TGG - chr6_1:95847529-95847548 None:intergenic 30.0%
CTCTATAATATTCTTCAAGG+AGG + chr6_1:95847550-95847569 Msa0900380:CDS 30.0%
TTTACTGACAATTGAGATGT+TGG - chr6_1:95847689-95847708 None:intergenic 30.0%
! TCGGCATTTTTCATTTCTTA+AGG + chr6_1:95847779-95847798 Msa0900380:intron 30.0%
! TTGCTATTGTTATTGTTGCT+GGG + chr6_1:95848040-95848059 Msa0900380:intron 30.0%
GCACAAATAACATATACTCT+GGG - chr6_1:95848312-95848331 None:intergenic 30.0%
ATAGAGTATGTGCATTCTAA+AGG + chr6_1:95848429-95848448 Msa0900380:CDS 30.0%
TAGAGTATGTGCATTCTAAA+GGG + chr6_1:95848430-95848449 Msa0900380:CDS 30.0%
ATCGGTCAATTCTAAATGTA+GGG - chr6_1:95848548-95848567 None:intergenic 30.0%
AATCGGTCAATTCTAAATGT+AGG - chr6_1:95848549-95848568 None:intergenic 30.0%
AGAAAGTTCAAAACCTGTAT+GGG - chr6_1:95848705-95848724 None:intergenic 30.0%
TAGAAAGTTCAAAACCTGTA+TGG - chr6_1:95848706-95848725 None:intergenic 30.0%
AAATCCGGTAAAAAAAAGAG+GGG - chr6_1:95848767-95848786 None:intergenic 30.0%
CAAATCCGGTAAAAAAAAGA+GGG - chr6_1:95848768-95848787 None:intergenic 30.0%
TCAAATCCGGTAAAAAAAAG+AGG - chr6_1:95848769-95848788 None:intergenic 30.0%
! TGCAATTTGTTTGATGTGAA+GGG - chr6_1:95848991-95849010 None:intergenic 30.0%
! TTGCAATTTGTTTGATGTGA+AGG - chr6_1:95848992-95849011 None:intergenic 30.0%
GGCATTCTTATCTAGTTATT+TGG + chr6_1:95849117-95849136 Msa0900380:intron 30.0%
ATACTTATGTTGCTCTCAAT+AGG - chr6_1:95849168-95849187 None:intergenic 30.0%
!!! ATTTGTCTGTTGTTTTGTGT+AGG + chr6_1:95849371-95849390 Msa0900380:intron 30.0%
! AATATGAATTTTGCGTATGG+AGG - chr6_1:95849894-95849913 None:intergenic 30.0%
! CAGAATATGAATTTTGCGTA+TGG - chr6_1:95849897-95849916 None:intergenic 30.0%
GCAAAATTCATATTCTGTTG+TGG + chr6_1:95849900-95849919 Msa0900380:intron 30.0%
AATATACTTACGGATATGTG+AGG - chr6_1:95850075-95850094 None:intergenic 30.0%
! TGTTGGTTATCAATATCCAT+GGG - chr6_1:95850206-95850225 None:intergenic 30.0%
! TTGTTGGTTATCAATATCCA+TGG - chr6_1:95850207-95850226 None:intergenic 30.0%
! ATGGATATTGATAACCAACA+AGG + chr6_1:95850206-95850225 Msa0900380:CDS 30.0%
! ATATTGATAACCAACAAGGT+TGG + chr6_1:95850210-95850229 Msa0900380:intron 30.0%
TTTAAACTGGAACTTAACAC+CGG - chr6_1:95850363-95850382 None:intergenic 30.0%
AAGTTCCAGTTTAAATCATC+AGG + chr6_1:95850368-95850387 Msa0900380:CDS 30.0%
TTCAAACTTGTGAAATAGAC+TGG + chr6_1:95850523-95850542 Msa0900380:intron 30.0%
! TGCTGAATATGGTAATTTTC+TGG + chr6_1:95850768-95850787 Msa0900380:intron 30.0%
! ATTTCTTAGCTCATCTTTTG+AGG + chr6_1:95851001-95851020 Msa0900380:intron 30.0%
CTATGTCACCACTTATTATA+CGG - chr6_1:95851225-95851244 None:intergenic 30.0%
TAATAAGTGGTGACATAGTT+TGG + chr6_1:95851227-95851246 Msa0900380:intron 30.0%
TGAATCATCAATCCATGAAA+TGG + chr6_1:95851427-95851446 Msa0900380:intron 30.0%
! TGAATCAGATGCAAAAGTTT+TGG + chr6_1:95851495-95851514 Msa0900380:three_prime_UTR 30.0%
TGAGAAGAAACCATTATTTC+GGG - chr6_1:95851531-95851550 None:intergenic 30.0%
! TCAAACATCAAAGGTAGTTT+TGG + chr6_1:95851548-95851567 Msa0900380:intron 30.0%
! AATATTAAGAGGTGCACATA+GGG - chr6_1:95851632-95851651 None:intergenic 30.0%
! AAATATTAAGAGGTGCACAT+AGG - chr6_1:95851633-95851652 None:intergenic 30.0%
!!! GTTTTATTTCAATGTGACCA+AGG + chr6_1:95851879-95851898 Msa0900380:three_prime_UTR 30.0%
!! ATTTGCAATTAGCTTTACAC+AGG - chr6_1:95851934-95851953 None:intergenic 30.0%
! CCAAAAAGAAAAAGTGTAGA+TGG - chr6_1:95852063-95852082 None:intergenic 30.0%
!!! CCATCTACACTTTTTCTTTT+TGG + chr6_1:95852060-95852079 Msa0900380:three_prime_UTR 30.0%
!!! TCTACACTTTTTCTTTTTGG+AGG + chr6_1:95852063-95852082 Msa0900380:three_prime_UTR 30.0%
TAACCCATGTAGGTTAAAAA+AGG - chr6_1:95852093-95852112 None:intergenic 30.0%
TTTCATTCTTTAACCCATGT+AGG - chr6_1:95852103-95852122 None:intergenic 30.0%
ATGTAGAGTAAATGACATCT+AGG + chr6_1:95852124-95852143 Msa0900380:three_prime_UTR 30.0%
TCATGAAAGATGGAAATATG+AGG + chr6_1:95852281-95852300 Msa0900380:three_prime_UTR 30.0%
CATGAAAGATGGAAATATGA+GGG + chr6_1:95852282-95852301 Msa0900380:three_prime_UTR 30.0%
AGGATCATATGTATGAAGAA+GGG - chr6_1:95852332-95852351 None:intergenic 30.0%
AACTAAAATCTCAATGTCAC+AGG - chr6_1:95852430-95852449 None:intergenic 30.0%
CGAGTAATATCTCAGATTCA+TGG + chr6_1:95846584-95846603 Msa0900380:exon 35.0%
AGATTCATGGATCGAATCAT+CGG + chr6_1:95846597-95846616 Msa0900380:exon 35.0%
AGCCATGTTATTGTCATGTT+TGG + chr6_1:95847016-95847035 Msa0900380:intron 35.0%
AATTATGTTTGGTATCCCAG+TGG - chr6_1:95847101-95847120 None:intergenic 35.0%
! TGCATGGTTTACTGTGATTT+TGG + chr6_1:95847405-95847424 Msa0900380:intron 35.0%
! CGTGATACCAAACATACTTT+TGG + chr6_1:95847437-95847456 Msa0900380:intron 35.0%
! TTGATTTTCTGTTGTGTTGC+AGG + chr6_1:95847483-95847502 Msa0900380:intron 35.0%
TTGTCAAGTATCTGCTATAG+CGG + chr6_1:95847834-95847853 Msa0900380:intron 35.0%
AATGTTGTCAATCGCAGATT+GGG - chr6_1:95847969-95847988 None:intergenic 35.0%
!! CTTGCTATTGTTATTGTTGC+TGG + chr6_1:95848039-95848058 Msa0900380:intron 35.0%
!! TGTGCTTGTTATGGATTTGT+TGG + chr6_1:95848148-95848167 Msa0900380:CDS 35.0%
!! GTGCTTGTTATGGATTTGTT+GGG + chr6_1:95848149-95848168 Msa0900380:CDS 35.0%
!! TGCTTGTTATGGATTTGTTG+GGG + chr6_1:95848150-95848169 Msa0900380:CDS 35.0%
ACAAAAAGATCCTCAAGACT+AGG - chr6_1:95848176-95848195 None:intergenic 35.0%
!! GAGGATCTTTTTGTTTACTG+TGG + chr6_1:95848182-95848201 Msa0900380:CDS 35.0%
!! CAACATCAAGACAGTTTTGA+GGG - chr6_1:95848219-95848238 None:intergenic 35.0%
TACGAAAGCCAGAACTAAAA+GGG - chr6_1:95848265-95848284 None:intergenic 35.0%
GGCACAAATAACATATACTC+TGG - chr6_1:95848313-95848332 None:intergenic 35.0%
ATAATCACATGACAAGACAG+TGG - chr6_1:95848334-95848353 None:intergenic 35.0%
AGAATGCACATACTCTATTC+TGG - chr6_1:95848427-95848446 None:intergenic 35.0%
!! TATCCGGTTTTATATCCCTA+TGG - chr6_1:95848461-95848480 None:intergenic 35.0%
AAAACCGGATAACTTTCTCA+TGG + chr6_1:95848470-95848489 Msa0900380:CDS 35.0%
AAACCGGATAACTTTCTCAT+GGG + chr6_1:95848471-95848490 Msa0900380:CDS 35.0%
!!! TTCTCCCCTCTTTTTTTTAC+CGG + chr6_1:95848760-95848779 Msa0900380:intron 35.0%
AGGGAGAACAAAAACTTAAC+CGG + chr6_1:95848900-95848919 Msa0900380:intron 35.0%
!! GAAAGTATCAACTCCTATTG+AGG + chr6_1:95849289-95849308 Msa0900380:CDS 35.0%
!! GAATGTTGGTTCATTTGGTA+TGG + chr6_1:95849621-95849640 Msa0900380:intron 35.0%
TATTCCATTCCACAAAGATG+TGG + chr6_1:95849654-95849673 Msa0900380:intron 35.0%
ATTCCATTCCACAAAGATGT+GGG + chr6_1:95849655-95849674 Msa0900380:intron 35.0%
TCATAAACCAGAAATGAGTG+GGG - chr6_1:95849978-95849997 None:intergenic 35.0%
GTCATAAACCAGAAATGAGT+GGG - chr6_1:95849979-95849998 None:intergenic 35.0%
TGTCATAAACCAGAAATGAG+TGG - chr6_1:95849980-95849999 None:intergenic 35.0%
!! ACTCATTTCTGGTTTATGAC+AGG + chr6_1:95849979-95849998 Msa0900380:intron 35.0%
TTCCAGTTTAAATCATCAGG+CGG + chr6_1:95850371-95850390 Msa0900380:CDS 35.0%
ATCATCAGGCGGTAAAAATT+TGG + chr6_1:95850382-95850401 Msa0900380:CDS 35.0%
AGAATGTAAGTCGTCTTACT+TGG + chr6_1:95850426-95850445 Msa0900380:intron 35.0%
TCGTCTTACTTGGAGTAAAA+AGG + chr6_1:95850436-95850455 Msa0900380:intron 35.0%
AAATTGGTCCTTCAAGTAGT+CGG + chr6_1:95850711-95850730 Msa0900380:CDS 35.0%
GTATACTGTGCTATGTTTCT+AGG + chr6_1:95850861-95850880 Msa0900380:intron 35.0%
AAACATGGAGCTGCATATTA+TGG + chr6_1:95850920-95850939 Msa0900380:three_prime_UTR 35.0%
AACATGGAGCTGCATATTAT+GGG + chr6_1:95850921-95850940 Msa0900380:three_prime_UTR 35.0%
AATCATTTGCAGTCACCTTA+GGG - chr6_1:95851050-95851069 None:intergenic 35.0%
GTATAAAATACAGACTGCAC+AGG + chr6_1:95851075-95851094 Msa0900380:intron 35.0%
GATTTGTGCCGTATAATAAG+TGG + chr6_1:95851214-95851233 Msa0900380:intron 35.0%
! GGTCATACATTCTGAAAACA+AGG - chr6_1:95851471-95851490 None:intergenic 35.0%
! CTTTTGCATCTGATTCATTG+TGG - chr6_1:95851492-95851511 None:intergenic 35.0%
GGTTTCTTCTCAAACATCAA+AGG + chr6_1:95851539-95851558 Msa0900380:three_prime_UTR 35.0%
!!! AACATCAAAGGTAGTTTTGG+TGG + chr6_1:95851551-95851570 Msa0900380:intron 35.0%
AAACCACACAATCGAATGTT+TGG - chr6_1:95851593-95851612 None:intergenic 35.0%
TAGAGTAAATGACATCTAGG+TGG + chr6_1:95852127-95852146 Msa0900380:three_prime_UTR 35.0%
AAATGTCCACATCCATTGAA+AGG + chr6_1:95852216-95852235 Msa0900380:three_prime_UTR 35.0%
AATGTCCACATCCATTGAAA+GGG + chr6_1:95852217-95852236 Msa0900380:three_prime_UTR 35.0%
GAATTCTTTCTCCCTTTCAA+TGG - chr6_1:95852231-95852250 None:intergenic 35.0%
TTGAAAGGGAGAAAGAATTC+AGG + chr6_1:95852231-95852250 Msa0900380:three_prime_UTR 35.0%
GGATCATATGTATGAAGAAG+GGG - chr6_1:95852331-95852350 None:intergenic 35.0%
GAGGATCATATGTATGAAGA+AGG - chr6_1:95852333-95852352 None:intergenic 35.0%
! ATTCTTATTTCGGTCGTCAA+GGG - chr6_1:95852358-95852377 None:intergenic 35.0%
! AATTCTTATTTCGGTCGTCA+AGG - chr6_1:95852359-95852378 None:intergenic 35.0%
AAATGAATTCAACACGCGGA+CGG - chr6_1:95846473-95846492 None:intergenic 40.0%
! TTCAAGTTAGGACGCAAGAT+CGG + chr6_1:95846627-95846646 Msa0900380:CDS 40.0%
TCCTTCGGTGAAATCTATCT+CGG + chr6_1:95846657-95846676 Msa0900380:CDS 40.0%
CTTGAGGTTCACTGTAATTC+TGG - chr6_1:95846920-95846939 None:intergenic 40.0%
ACCTCAAGATACTGTGATTC+TGG + chr6_1:95846932-95846951 Msa0900380:CDS 40.0%
ACCAGAATCACAGTATCTTG+AGG - chr6_1:95846936-95846955 None:intergenic 40.0%
CTGTGATTCTGGTATATCCA+TGG + chr6_1:95846943-95846962 Msa0900380:intron 40.0%
AAGCATGTTTGGTATCACCA+TGG - chr6_1:95846963-95846982 None:intergenic 40.0%
ACCATGAGATACTGTGATTC+TGG + chr6_1:95847070-95847089 Msa0900380:intron 40.0%
!! TGCATGTTTGGTGTCAGAAA+TGG + chr6_1:95847351-95847370 Msa0900380:intron 40.0%
AGGTGTTCCTGTATTTACTC+TGG + chr6_1:95847809-95847828 Msa0900380:intron 40.0%
GACAACACCAGAGTAAATAC+AGG - chr6_1:95847819-95847838 None:intergenic 40.0%
CAATGTTGTCAATCGCAGAT+TGG - chr6_1:95847970-95847989 None:intergenic 40.0%
ATAAGATGGAGTGGTGTAGA+CGG + chr6_1:95848116-95848135 Msa0900380:CDS 40.0%
! GGAAGACAATGTGCTTGTTA+TGG + chr6_1:95848139-95848158 Msa0900380:CDS 40.0%
! CCAACATCAAGACAGTTTTG+AGG - chr6_1:95848220-95848239 None:intergenic 40.0%
CCTCAAAACTGTCTTGATGT+TGG + chr6_1:95848217-95848236 Msa0900380:CDS 40.0%
! CTTGATGTTGGCTGATCAAA+TGG + chr6_1:95848229-95848248 Msa0900380:CDS 40.0%
AAGCCAGAACTAAAAGGGAT+GGG - chr6_1:95848260-95848279 None:intergenic 40.0%
AAAGCCAGAACTAAAAGGGA+TGG - chr6_1:95848261-95848280 None:intergenic 40.0%
CTACGAAAGCCAGAACTAAA+AGG - chr6_1:95848266-95848285 None:intergenic 40.0%
CATGTGATTATGATGCCAAG+CGG + chr6_1:95848343-95848362 Msa0900380:intron 40.0%
ATGTGATTATGATGCCAAGC+GGG + chr6_1:95848344-95848363 Msa0900380:intron 40.0%
! CGGGAAGTGTGCATTTATAA+AGG + chr6_1:95848363-95848382 Msa0900380:intron 40.0%
! ATTCTAAAGGGTTCCTCCAT+AGG + chr6_1:95848442-95848461 Msa0900380:CDS 40.0%
! TTCTAAAGGGTTCCTCCATA+GGG + chr6_1:95848443-95848462 Msa0900380:CDS 40.0%
CCTCCATAGGGATATAAAAC+CGG + chr6_1:95848455-95848474 Msa0900380:CDS 40.0%
AGTCCCATGAGAAAGTTATC+CGG - chr6_1:95848477-95848496 None:intergenic 40.0%
GATAACTTTCTCATGGGACT+TGG + chr6_1:95848477-95848496 Msa0900380:CDS 40.0%
AGCTCAAGGAATGACAGAAT+CGG - chr6_1:95848566-95848585 None:intergenic 40.0%
TTGGGCTTGCAAAACGATAT+CGG + chr6_1:95848656-95848675 Msa0900380:CDS 40.0%
TTCAAAACCTGTATGGGATG+TGG - chr6_1:95848699-95848718 None:intergenic 40.0%
GGGAGAACAAAAACTTAACC+GGG + chr6_1:95848901-95848920 Msa0900380:intron 40.0%
CAAGCTGCAATACTCATCTT+GGG + chr6_1:95848937-95848956 Msa0900380:CDS 40.0%
TGCAATACTCATCTTGGGAT+TGG + chr6_1:95848942-95848961 Msa0900380:CDS 40.0%
TATTTGTAGAACAAAGCCGC+CGG + chr6_1:95849040-95849059 Msa0900380:intron 40.0%
! TTTTGTACTTCCTCAGAGGA+AGG + chr6_1:95849091-95849110 Msa0900380:CDS 40.0%
! TAATTGTGTTTAGCCTTCCC+TGG + chr6_1:95849213-95849232 Msa0900380:intron 40.0%
AAGTACGAAGCAAACTCTAC+AGG - chr6_1:95849414-95849433 None:intergenic 40.0%
AGGTCAAAGAATGGCAGTAA+TGG - chr6_1:95849437-95849456 None:intergenic 40.0%
GCTGATCAAAGGTCAAAGAA+TGG - chr6_1:95849446-95849465 None:intergenic 40.0%
ATAATCAGGTCGCTGATCAA+AGG - chr6_1:95849457-95849476 None:intergenic 40.0%
TTTGATCAGCGACCTGATTA+TGG + chr6_1:95849456-95849475 Msa0900380:CDS 40.0%
GACCTGATTATGGATTCTTG+AGG + chr6_1:95849466-95849485 Msa0900380:CDS 40.0%
GAGCAAATAACTCCCGAAAT+AGG - chr6_1:95849494-95849513 None:intergenic 40.0%
CCAAATGAACCAACATTCGT+TGG - chr6_1:95849619-95849638 None:intergenic 40.0%
!! CCAACGAATGTTGGTTCATT+TGG + chr6_1:95849616-95849635 Msa0900380:intron 40.0%
TGATTTGAGGACTCTGATAG+TGG + chr6_1:95849693-95849712 Msa0900380:intron 40.0%
GATTTGAGGACTCTGATAGT+GGG + chr6_1:95849694-95849713 Msa0900380:intron 40.0%
ATGTGTTATGGAAAGCCTCA+AGG - chr6_1:95849754-95849773 None:intergenic 40.0%
CATAACACATATTGAGCCTG+CGG + chr6_1:95849764-95849783 Msa0900380:intron 40.0%
ATAACACATATTGAGCCTGC+GGG + chr6_1:95849765-95849784 Msa0900380:intron 40.0%
TGAGTGGGGATGTTACATTT+CGG - chr6_1:95849964-95849983 None:intergenic 40.0%
TACCGCCTGATGATTTAAAC+TGG - chr6_1:95850376-95850395 None:intergenic 40.0%
! TTGGCTTCTGAGAATCATCT+TGG + chr6_1:95850401-95850420 Msa0900380:CDS 40.0%
ATTCCTTGCTACTGAATCTG+CGG + chr6_1:95850463-95850482 Msa0900380:intron 40.0%
! CGAAAGAGTGTGAAGTAGAA+GGG - chr6_1:95850613-95850632 None:intergenic 40.0%
! TCGAAAGAGTGTGAAGTAGA+AGG - chr6_1:95850614-95850633 None:intergenic 40.0%
! ACTCTTTCGAAGCATCAAGA+AGG + chr6_1:95850624-95850643 Msa0900380:CDS 40.0%
ACATTCATCCGACTACTTGA+AGG - chr6_1:95850722-95850741 None:intergenic 40.0%
CAGTGGTCAATGATATGAGT+GGG - chr6_1:95850840-95850859 None:intergenic 40.0%
TCCATGTTTGTATGCATGCA+GGG - chr6_1:95850909-95850928 None:intergenic 40.0%
ACATGGAGCTGCATATTATG+GGG + chr6_1:95850922-95850941 Msa0900380:three_prime_UTR 40.0%
TAGCACATTAGTAGTCTCCA+CGG - chr6_1:95850969-95850988 None:intergenic 40.0%
GAGACTACTAATGTGCTACA+AGG + chr6_1:95850971-95850990 Msa0900380:three_prime_UTR 40.0%
GGGAAATGAGCAACATAAAC+TGG - chr6_1:95851027-95851046 None:intergenic 40.0%
ATCATTTGCAGTCACCTTAG+GGG - chr6_1:95851049-95851068 None:intergenic 40.0%
CAATCATTTGCAGTCACCTT+AGG - chr6_1:95851051-95851070 None:intergenic 40.0%
GGTGACTGCAAATGATTGTT+TGG + chr6_1:95851053-95851072 Msa0900380:intron 40.0%
ACAAATCACAAGTGGCAAGA+GGG - chr6_1:95851201-95851220 None:intergenic 40.0%
TATACGGCACAAATCACAAG+TGG - chr6_1:95851209-95851228 None:intergenic 40.0%
AAGTGCACTGTATCTTATGC+AGG - chr6_1:95851378-95851397 None:intergenic 40.0%
ACAAGCTGCTTACCATTTCA+TGG - chr6_1:95851442-95851461 None:intergenic 40.0%
TGAAATGGTAAGCAGCTTGT+CGG + chr6_1:95851442-95851461 Msa0900380:intron 40.0%
CAAGATGACTCCCGAAATAA+TGG + chr6_1:95851518-95851537 Msa0900380:three_prime_UTR 40.0%
CTTCCAAACATTCGATTGTG+TGG + chr6_1:95851587-95851606 Msa0900380:intron 40.0%
! TGTGGTTTAACGTTAGTCTG+AGG + chr6_1:95851605-95851624 Msa0900380:intron 40.0%
ATTTCAATGTGACCAAGGTG+TGG + chr6_1:95851884-95851903 Msa0900380:intron 40.0%
TTTCTCCCTTTCAATGGATG+TGG - chr6_1:95852225-95852244 None:intergenic 40.0%
! ATGGTGGAGATCATGAAAGA+TGG + chr6_1:95852271-95852290 Msa0900380:three_prime_UTR 40.0%
!!! TTTTAGTTTCCCCGTCAATG+CGG + chr6_1:95852442-95852461 Msa0900380:three_prime_UTR 40.0%
! TAGTATTATCCGCATTGACG+GGG - chr6_1:95852454-95852473 None:intergenic 40.0%
! CTAGTATTATCCGCATTGAC+GGG - chr6_1:95852455-95852474 None:intergenic 40.0%
CCTAGTATTATCCGCATTGA+CGG - chr6_1:95852456-95852475 None:intergenic 40.0%
! GTTTTCCTTTTCCATTGCGG+TGG + chr6_1:95846501-95846520 Msa0900380:five_prime_UTR 45.0%
AAGATCGGAAGTGGATCCTT+CGG + chr6_1:95846642-95846661 Msa0900380:CDS 45.0%
ACCGAGATAGATTTCACCGA+AGG - chr6_1:95846661-95846680 None:intergenic 45.0%
GGTATCATGGTAGATTTGCC+AGG + chr6_1:95847037-95847056 Msa0900380:intron 45.0%
CTCATGGTTCACTTTGATCC+TGG - chr6_1:95847058-95847077 None:intergenic 45.0%
GCCAGAATCACAGTATCTCA+TGG - chr6_1:95847074-95847093 None:intergenic 45.0%
TGTGATTCTGGCATATCCAC+TGG + chr6_1:95847082-95847101 Msa0900380:intron 45.0%
GTGATTCTGGCATATCCACT+GGG + chr6_1:95847083-95847102 Msa0900380:intron 45.0%
TTGTTACCGCAGTGCATGTT+TGG + chr6_1:95847339-95847358 Msa0900380:intron 45.0%
GTGGTATCCCAAGCATAAGA+TGG + chr6_1:95848102-95848121 Msa0900380:CDS 45.0%
ATCCCAAGCATAAGATGGAG+TGG + chr6_1:95848107-95848126 Msa0900380:CDS 45.0%
CACCACTCCATCTTATGCTT+GGG - chr6_1:95848112-95848131 None:intergenic 45.0%
ACACCACTCCATCTTATGCT+TGG - chr6_1:95848113-95848132 None:intergenic 45.0%
TAAGATGGAGTGGTGTAGAC+GGG + chr6_1:95848117-95848136 Msa0900380:CDS 45.0%
AGCCAGAACTAAAAGGGATG+GGG - chr6_1:95848259-95848278 None:intergenic 45.0%
ATAAATGCACACTTCCCGCT+TGG - chr6_1:95848361-95848380 None:intergenic 45.0%
!! CCGGTTTTATATCCCTATGG+AGG - chr6_1:95848458-95848477 None:intergenic 45.0%
! ACTTTCTCATGGGACTTGGT+CGG + chr6_1:95848481-95848500 Msa0900380:CDS 45.0%
GATTCTGTCATTCCTTGAGC+TGG + chr6_1:95848565-95848584 Msa0900380:intron 45.0%
TCGATGAAACAACCAGCTCA+AGG - chr6_1:95848580-95848599 None:intergenic 45.0%
GTGCTTGTGTTGTACATGTC+AGG + chr6_1:95848618-95848637 Msa0900380:intron 45.0%
TGGGCTTGCAAAACGATATC+GGG + chr6_1:95848657-95848676 Msa0900380:CDS 45.0%
GATGAGAAGAGCAGAGGTAA+AGG - chr6_1:95848836-95848855 None:intergenic 45.0%
GCAAGCTGCAATACTCATCT+TGG + chr6_1:95848936-95848955 Msa0900380:CDS 45.0%
ATTTGTAGAACAAAGCCGCC+GGG + chr6_1:95849041-95849060 Msa0900380:intron 45.0%
CAAGAGACTCCAAATCATCC+CGG - chr6_1:95849062-95849081 None:intergenic 45.0%
! GTGCTTTTGTACTTCCTCAG+AGG + chr6_1:95849087-95849106 Msa0900380:CDS 45.0%
TACTTCCTCAGAGGAAGGTA+TGG + chr6_1:95849096-95849115 Msa0900380:intron 45.0%
CGAAGCAAACTCTACAGGAT+GGG - chr6_1:95849409-95849428 None:intergenic 45.0%
ACGAAGCAAACTCTACAGGA+TGG - chr6_1:95849410-95849429 None:intergenic 45.0%
CGCCTCAAGAATCCATAATC+AGG - chr6_1:95849471-95849490 None:intergenic 45.0%
! GATTCTTGAGGCGCCTATTT+CGG + chr6_1:95849478-95849497 Msa0900380:CDS 45.0%
! ATTCTTGAGGCGCCTATTTC+GGG + chr6_1:95849479-95849498 Msa0900380:CDS 45.0%
! CATTCGTTGGCTGGTGATTT+AGG - chr6_1:95849606-95849625 None:intergenic 45.0%
AATCACCAGCCAACGAATGT+TGG + chr6_1:95849607-95849626 Msa0900380:intron 45.0%
ATGAACCAACATTCGTTGGC+TGG - chr6_1:95849615-95849634 None:intergenic 45.0%
GAACCCACATCTTTGTGGAA+TGG - chr6_1:95849661-95849680 None:intergenic 45.0%
CATTCGAACCCACATCTTTG+TGG - chr6_1:95849666-95849685 None:intergenic 45.0%
GGCTCAATAAGCGCTTATAG+AGG - chr6_1:95849733-95849752 None:intergenic 45.0%
TAAGCGCTTATTGAGCCTTG+AGG + chr6_1:95849736-95849755 Msa0900380:intron 45.0%
CGCAGGCTCAATATGTGTTA+TGG - chr6_1:95849766-95849785 None:intergenic 45.0%
GTAACATCCCCACTCATTTC+TGG + chr6_1:95849968-95849987 Msa0900380:intron 45.0%
! CTCTACTCTTTTGTGACTGC+TGG - chr6_1:95850047-95850066 None:intergenic 45.0%
ACTTACGGATATGTGAGGCT+GGG - chr6_1:95850070-95850089 None:intergenic 45.0%
TACTTACGGATATGTGAGGC+TGG - chr6_1:95850071-95850090 None:intergenic 45.0%
GTGTGTGTGTGTGTGTAGAT+TGG + chr6_1:95850098-95850117 Msa0900380:intron 45.0%
TTCCTGTAGCGAGCAACAAT+CGG + chr6_1:95850174-95850193 Msa0900380:CDS 45.0%
TTATACAGGGGATGTCTCAG+CGG + chr6_1:95850307-95850326 Msa0900380:intron 45.0%
GAACTTAACACCGGAAGAAG+CGG - chr6_1:95850354-95850373 None:intergenic 45.0%
AAGCTGCAAACCATAGGCAT+GGG + chr6_1:95850675-95850694 Msa0900380:CDS 45.0%
GCAGTGGTCAATGATATGAG+TGG - chr6_1:95850841-95850860 None:intergenic 45.0%
ACATAGCACAGTATACGCAG+TGG - chr6_1:95850857-95850876 None:intergenic 45.0%
TCCCTGCATGCATACAAACA+TGG + chr6_1:95850905-95850924 Msa0900380:three_prime_UTR 45.0%
CTCCATGTTTGTATGCATGC+AGG - chr6_1:95850910-95850929 None:intergenic 45.0%
AGCACATTAGTAGTCTCCAC+GGG - chr6_1:95850968-95850987 None:intergenic 45.0%
TCATTTGCAGTCACCTTAGG+GGG - chr6_1:95851048-95851067 None:intergenic 45.0%
AAATACAGACTGCACAGGCT+TGG + chr6_1:95851080-95851099 Msa0900380:intron 45.0%
CAAATCACAAGTGGCAAGAG+GGG - chr6_1:95851200-95851219 None:intergenic 45.0%
CACAAATCACAAGTGGCAAG+AGG - chr6_1:95851202-95851221 None:intergenic 45.0%
ATTGCAGTTTGTCCACACCT+TGG - chr6_1:95851899-95851918 None:intergenic 45.0%
ATATCTCTTCATACGGGCGA+TGG + chr6_1:95852166-95852185 Msa0900380:three_prime_UTR 45.0%
CCGTCAATGCGGATAATACT+AGG + chr6_1:95852453-95852472 Msa0900380:three_prime_UTR 45.0%
TGCGGATAATACTAGGTCAC+CGG + chr6_1:95852460-95852479 Msa0900380:three_prime_UTR 45.0%
AGAAGAACTAGCACAAGACC+CGG - chr6_1:95852482-95852501 None:intergenic 45.0%
!! TTAAATTACAAAAAAAAAAA+TGG - chr6_1:95846835-95846854 None:intergenic 5.0%
!! AAATTATTTATTTATGTTAT+TGG + chr6_1:95847144-95847163 Msa0900380:intron 5.0%
AGTAGCCACCGCAATGGAAA+AGG - chr6_1:95846509-95846528 None:intergenic 50.0%
TTAGGACGCAAGATCGGAAG+TGG + chr6_1:95846633-95846652 Msa0900380:CDS 50.0%
CTTGACAGCAACGATCTCGA+AGG - chr6_1:95846798-95846817 None:intergenic 50.0%
CTGACACCAAACATGCACTG+CGG - chr6_1:95847348-95847367 None:intergenic 50.0%
TCTGTTGTGTTGCAGGAGAC+TGG + chr6_1:95847490-95847509 Msa0900380:intron 50.0%
AAGATGGAGTGGTGTAGACG+GGG + chr6_1:95848118-95848137 Msa0900380:CDS 50.0%
!! TTTGTTGGGGCCTAGTCTTG+AGG + chr6_1:95848163-95848182 Msa0900380:CDS 50.0%
!!! ACCCCCATCCCTTTTAGTTC+TGG + chr6_1:95848254-95848273 Msa0900380:intron 50.0%
GCCAGAACTAAAAGGGATGG+GGG - chr6_1:95848258-95848277 None:intergenic 50.0%
CTAAGGGATGAGAAGAGCAG+AGG - chr6_1:95848842-95848861 None:intergenic 50.0%
! CGGGATGATTTGGAGTCTCT+TGG + chr6_1:95849060-95849079 Msa0900380:CDS 50.0%
GAATGCCATACCTTCCTCTG+AGG - chr6_1:95849104-95849123 None:intergenic 50.0%
!! CCTTTAGGTTTTGCCAGGGA+AGG - chr6_1:95849229-95849248 None:intergenic 50.0%
CCTTCCCTGGCAAAACCTAA+AGG + chr6_1:95849226-95849245 Msa0900380:CDS 50.0%
!! GCAGCCTTTAGGTTTTGCCA+GGG - chr6_1:95849233-95849252 None:intergenic 50.0%
GCTTCTTTGTCGCAGCCTTT+AGG - chr6_1:95849244-95849263 None:intergenic 50.0%
GGGCAGATGCTTACCTCAAT+AGG - chr6_1:95849305-95849324 None:intergenic 50.0%
CGGGAGTTATTTGCTCGAGA+AGG + chr6_1:95849498-95849517 Msa0900380:CDS 50.0%
CAGAGTCCTCAAATCAGCCA+CGG - chr6_1:95849689-95849708 None:intergenic 50.0%
TTGTTGCTCGCTACAGGAAC+CGG - chr6_1:95850173-95850192 None:intergenic 50.0%
TCCTGTAGCGAGCAACAATC+GGG + chr6_1:95850175-95850194 Msa0900380:CDS 50.0%
GGTTCAAGCACCAACCTTGT+TGG - chr6_1:95850223-95850242 None:intergenic 50.0%
! TCAGACAATGCCGCTTCTTC+CGG + chr6_1:95850341-95850360 Msa0900380:CDS 50.0%
GTTCCGCAGATTCAGTAGCA+AGG - chr6_1:95850469-95850488 None:intergenic 50.0%
! CCTATGGTTTGCAGCTTCAG+TGG - chr6_1:95850672-95850691 None:intergenic 50.0%
CCACTGAAGCTGCAAACCAT+AGG + chr6_1:95850669-95850688 Msa0900380:CDS 50.0%
GAAGCTGCAAACCATAGGCA+TGG + chr6_1:95850674-95850693 Msa0900380:CDS 50.0%
CAAACCATAGGCATGGGCAA+GGG + chr6_1:95850681-95850700 Msa0900380:CDS 50.0%
GGGCAAGGGAGCAGTAAAAT+TGG + chr6_1:95850695-95850714 Msa0900380:CDS 50.0%
TACTCAATGCAGCACACGTG+CGG - chr6_1:95850800-95850819 None:intergenic 50.0%
TGTTGCTCATTTCCCCCCTA+AGG + chr6_1:95851032-95851051 Msa0900380:intron 50.0%
CATTTGCAGTCACCTTAGGG+GGG - chr6_1:95851047-95851066 None:intergenic 50.0%
ATGGATCCTCTCGTGTCATG+AGG + chr6_1:95852185-95852204 Msa0900380:three_prime_UTR 50.0%
TGGATCCTCTCGTGTCATGA+GGG + chr6_1:95852186-95852205 Msa0900380:three_prime_UTR 50.0%
ATAGACCCTCATGACACGAG+AGG - chr6_1:95852194-95852213 None:intergenic 50.0%
ATTTCGGTCGTCAAGGGTTG+AGG - chr6_1:95852352-95852371 None:intergenic 50.0%
GCGGATAATACTAGGTCACC+GGG + chr6_1:95852461-95852480 Msa0900380:three_prime_UTR 50.0%
GAATTCAACACGCGGACGGA+TGG - chr6_1:95846469-95846488 None:intergenic 55.0%
GAAGAGAGTAGCCACCGCAA+TGG - chr6_1:95846515-95846534 None:intergenic 55.0%
!! CTATAGCGGTGCTATAGCGC+TGG + chr6_1:95847848-95847867 Msa0900380:intron 55.0%
! TCTCATGGGACTTGGTCGGA+AGG + chr6_1:95848485-95848504 Msa0900380:CDS 55.0%
ACTTGGTCGGAAGGCAAACC+TGG + chr6_1:95848494-95848513 Msa0900380:CDS 55.0%
! TGGGATGTGGCGATTGGTTG+TGG - chr6_1:95848686-95848705 None:intergenic 55.0%
CCTGTATGGGATGTGGCGAT+TGG - chr6_1:95848692-95848711 None:intergenic 55.0%
CCAATCGCCACATCCCATAC+AGG + chr6_1:95848689-95848708 Msa0900380:CDS 55.0%
ACAAAGCCGCCGGGATGATT+TGG + chr6_1:95849050-95849069 Msa0900380:CDS 55.0%
GAGACTCCAAATCATCCCGG+CGG - chr6_1:95849059-95849078 None:intergenic 55.0%
!! CGCAGCCTTTAGGTTTTGCC+AGG - chr6_1:95849234-95849253 None:intergenic 55.0%
AGATGTGGGTTCGAATGCCG+TGG + chr6_1:95849669-95849688 Msa0900380:intron 55.0%
!! CGAATGCCGTGGCTGATTTG+AGG + chr6_1:95849680-95849699 Msa0900380:intron 55.0%
!! TTAGGTGGATTGAGTCCCGC+AGG - chr6_1:95849783-95849802 None:intergenic 55.0%
CAACAATCGGGCAATGCCCA+TGG + chr6_1:95850187-95850206 Msa0900380:CDS 55.0%
GTTTGCAGCTTCAGTGGACG+CGG - chr6_1:95850666-95850685 None:intergenic 55.0%
GCAAACCATAGGCATGGGCA+AGG + chr6_1:95850680-95850699 Msa0900380:CDS 55.0%
CAAGTGGCAAGAGGGGCAAA+TGG - chr6_1:95851193-95851212 None:intergenic 55.0%
TCAACACGCGGACGGATGGA+CGG - chr6_1:95846465-95846484 None:intergenic 60.0%
GCTTGCATAACGCGCAGTCC+CGG - chr6_1:95848922-95848941 None:intergenic 60.0%
GCCCGATTGTTGCTCGCTAC+AGG - chr6_1:95850179-95850198 None:intergenic 60.0%
AGTGGACGCGGAAGGCTTCA+AGG - chr6_1:95850654-95850673 None:intergenic 60.0%
TGCTCCCTTGCCCATGCCTA+TGG - chr6_1:95850688-95850707 None:intergenic 60.0%
GCTTGCAAGTGATCTGCCCG+TGG + chr6_1:95850949-95850968 Msa0900380:three_prime_UTR 60.0%
GCAGCTTCAGTGGACGCGGA+AGG - chr6_1:95850662-95850681 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95846410 95852549 95846410 ID=Msa0900380;Name=Msa0900380
chr6_1 mRNA 95846410 95852549 95846410 ID=Msa0900380-mRNA-1;Parent=Msa0900380;Name=Msa0900380-mRNA-1;_AED=0.17;_eAED=0.17;_QI=193|0.88|0.94|0.94|0.77|0.78|19|847|438
chr6_1 exon 95846410 95846678 95846410 ID=Msa0900380-mRNA-1:exon:16600;Parent=Msa0900380-mRNA-1
chr6_1 exon 95846780 95846820 95846780 ID=Msa0900380-mRNA-1:exon:16601;Parent=Msa0900380-mRNA-1
chr6_1 exon 95846912 95846953 95846912 ID=Msa0900380-mRNA-1:exon:16602;Parent=Msa0900380-mRNA-1
chr6_1 exon 95847505 95847574 95847505 ID=Msa0900380-mRNA-1:exon:16603;Parent=Msa0900380-mRNA-1
chr6_1 exon 95848102 95848250 95848102 ID=Msa0900380-mRNA-1:exon:16604;Parent=Msa0900380-mRNA-1
chr6_1 exon 95848420 95848515 95848420 ID=Msa0900380-mRNA-1:exon:16605;Parent=Msa0900380-mRNA-1
chr6_1 exon 95848640 95848710 95848640 ID=Msa0900380-mRNA-1:exon:16606;Parent=Msa0900380-mRNA-1
chr6_1 exon 95848902 95848963 95848902 ID=Msa0900380-mRNA-1:exon:16607;Parent=Msa0900380-mRNA-1
chr6_1 exon 95849049 95849112 95849049 ID=Msa0900380-mRNA-1:exon:16608;Parent=Msa0900380-mRNA-1
chr6_1 exon 95849226 95849310 95849226 ID=Msa0900380-mRNA-1:exon:16609;Parent=Msa0900380-mRNA-1
chr6_1 exon 95849393 95849519 95849393 ID=Msa0900380-mRNA-1:exon:16610;Parent=Msa0900380-mRNA-1
chr6_1 exon 95850001 95850083 95850001 ID=Msa0900380-mRNA-1:exon:16611;Parent=Msa0900380-mRNA-1
chr6_1 exon 95850170 95850227 95850170 ID=Msa0900380-mRNA-1:exon:16612;Parent=Msa0900380-mRNA-1
chr6_1 exon 95850315 95850430 95850315 ID=Msa0900380-mRNA-1:exon:16613;Parent=Msa0900380-mRNA-1
chr6_1 exon 95850590 95850778 95850590 ID=Msa0900380-mRNA-1:exon:16614;Parent=Msa0900380-mRNA-1
chr6_1 exon 95850883 95850992 95850883 ID=Msa0900380-mRNA-1:exon:16615;Parent=Msa0900380-mRNA-1
chr6_1 exon 95851480 95851560 95851480 ID=Msa0900380-mRNA-1:exon:16616;Parent=Msa0900380-mRNA-1
chr6_1 exon 95851813 95851900 95851813 ID=Msa0900380-mRNA-1:exon:16617;Parent=Msa0900380-mRNA-1
chr6_1 exon 95851994 95852549 95851994 ID=Msa0900380-mRNA-1:exon:16618;Parent=Msa0900380-mRNA-1
chr6_1 five_prime_UTR 95846410 95846602 95846410 ID=Msa0900380-mRNA-1:five_prime_utr;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95846603 95846678 95846603 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95846780 95846820 95846780 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95846912 95846953 95846912 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95847505 95847574 95847505 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95848102 95848250 95848102 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95848420 95848515 95848420 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95848640 95848710 95848640 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95848902 95848963 95848902 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95849049 95849112 95849049 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95849226 95849310 95849226 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95849393 95849519 95849393 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95850001 95850083 95850001 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95850170 95850227 95850170 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95850315 95850430 95850315 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 CDS 95850590 95850766 95850590 ID=Msa0900380-mRNA-1:cds;Parent=Msa0900380-mRNA-1
chr6_1 three_prime_UTR 95850767 95850778 95850767 ID=Msa0900380-mRNA-1:three_prime_utr;Parent=Msa0900380-mRNA-1
chr6_1 three_prime_UTR 95850883 95850992 95850883 ID=Msa0900380-mRNA-1:three_prime_utr;Parent=Msa0900380-mRNA-1
chr6_1 three_prime_UTR 95851480 95851560 95851480 ID=Msa0900380-mRNA-1:three_prime_utr;Parent=Msa0900380-mRNA-1
chr6_1 three_prime_UTR 95851813 95851900 95851813 ID=Msa0900380-mRNA-1:three_prime_utr;Parent=Msa0900380-mRNA-1
chr6_1 three_prime_UTR 95851994 95852549 95851994 ID=Msa0900380-mRNA-1:three_prime_utr;Parent=Msa0900380-mRNA-1
Gene Sequence

>Msa0900380

ATGGATCGAATCATCGGTGATAAATTCAAGTTAGGACGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACTCATATTGATACCTTCGAGATCGTTGCTGTCAAGATCATTTGCCAGAATTACAGTGAACCTCAAGATACTGTGATTCTGGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCTAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAATTCTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGGTTCCTCCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTATATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCATACAGGGAGAACAAAAACTTAACCGGGACTGCGCGTTATGCAAGCTGCAATACTCATCTTGGGATTGAACAAAGCCGCCGGGATGATTTGGAGTCTCTTGGATACGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCCTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCCCATCCTGTAGAGTTTGCTTCGTACTTCCATTACTGCCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGGGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCCCAGCCTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGGGATGTCTCAGCGGAGCAGATTAGATCAGACAATGCCGCTTCTTCCGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCATCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTCGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCGCGTCCACTGAAGCTGCAAACCATAGGCATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTGCACATAAGTTCTGCTAAATAA
Protein sequence

>Msa0900380

MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIICQNYSEPQDTVILETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPVPVASNNRAMPMDIDNQQGDVSAEQIRSDNAASSGVKFQFKSSGGKNLASENHLGKNIFGEATIPSTSHSFEASRRNSLKPSASTEAANHRHGQGSSKIGPSSSRMNVLHISSAK*