AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1000530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000530 MtrunA17_Chr6g0486611 93.632 424 5 1 32 433 1 424 0.0 815
Msa1000530 MtrunA17_Chr8g0390211 74.648 426 82 5 32 433 1 424 0.0 641
Msa1000530 MtrunA17_Chr3g0140071 60.345 406 129 5 32 407 1 404 1.40e-166 475
Msa1000530 MtrunA17_Chr1g0166821 69.782 321 72 3 31 326 1 321 3.55e-164 469
Msa1000530 MtrunA17_Chr4g0071031 67.267 333 86 2 32 342 1 332 8.18e-164 469
Msa1000530 MtrunA17_Chr2g0329981 58.950 419 134 8 32 420 1 411 1.55e-163 469
Msa1000530 MtrunA17_Chr1g0183631 71.104 308 67 1 32 317 1 308 1.99e-160 460
Msa1000530 MtrunA17_Chr1g0187571 67.081 322 81 3 31 327 1 322 8.84e-158 454
Msa1000530 MtrunA17_Chr8g0342821 71.237 299 63 2 32 308 1 298 1.49e-157 453
Msa1000530 MtrunA17_Chr1g0146151 55.981 418 146 6 32 420 1 409 2.65e-156 448
Msa1000530 MtrunA17_Chr7g0261501 70.370 297 66 1 32 306 1 297 5.09e-156 449
Msa1000530 MtrunA17_Chr2g0299661 68.562 299 72 1 32 308 1 299 6.68e-154 444
Msa1000530 MtrunA17_Chr1g0167261 63.333 300 86 2 32 307 2 301 1.76e-135 392
Msa1000530 MtrunA17_Chr7g0214531 33.803 284 149 6 40 287 37 317 7.02e-48 172
Msa1000530 MtrunA17_Chr1g0213321 34.307 274 146 5 40 282 119 389 1.98e-47 172
Msa1000530 MtrunA17_Chr3g0140431 34.432 273 146 6 40 282 38 307 2.70e-46 168
Msa1000530 MtrunA17_Chr7g0253211 34.397 282 145 6 40 285 324 601 2.98e-46 171
Msa1000530 MtrunA17_Chr1g0146301 32.967 273 150 5 40 282 124 393 4.40e-45 166
Msa1000530 MtrunA17_Chr8g0340491 31.786 280 151 6 40 282 128 404 1.31e-41 156
Msa1000530 MtrunA17_Chr5g0428981 25.407 307 157 11 2 258 734 1018 1.42e-14 76.3
Msa1000530 MtrunA17_Chr4g0018201 25.510 294 153 10 2 245 730 1007 2.17e-14 75.9
Msa1000530 MtrunA17_Chr7g0245031 25.630 238 137 5 34 245 142 365 3.67e-12 68.2
Msa1000530 MtrunA17_Chr4g0075541 29.412 170 103 4 109 278 185 337 2.58e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000530 AT4G28880.3 66.110 419 105 5 32 419 1 413 0.0 559
Msa1000530 AT4G28880.2 66.110 419 105 5 32 419 1 413 0.0 559
Msa1000530 AT4G28880.1 66.110 419 105 5 32 419 1 413 0.0 559
Msa1000530 AT4G28880.4 66.110 419 105 5 32 419 1 413 0.0 559
Msa1000530 AT4G28860.1 67.299 422 99 8 32 425 1 411 0.0 555
Msa1000530 AT4G28860.2 74.105 363 65 4 32 367 1 361 0.0 550
Msa1000530 AT4G26100.1 66.154 325 87 2 32 334 1 324 3.87e-159 457
Msa1000530 AT2G19470.1 64.286 336 88 4 32 336 1 335 5.83e-158 453
Msa1000530 AT5G57015.1 65.938 320 87 1 32 329 1 320 1.76e-157 452
Msa1000530 AT1G72710.1 64.058 345 99 4 32 354 1 342 1.02e-156 451
Msa1000530 AT1G03930.1 69.360 297 69 1 32 306 1 297 4.58e-156 450
Msa1000530 AT3G23340.1 67.628 312 78 2 32 321 1 311 5.51e-156 449
Msa1000530 AT4G28540.1 69.799 298 68 1 32 307 5 302 2.07e-155 449
Msa1000530 AT5G44100.1 63.939 330 86 2 32 328 1 330 4.43e-155 447
Msa1000530 AT5G44100.2 63.939 330 86 2 32 328 1 330 4.43e-155 447
Msa1000530 AT5G43320.1 69.024 297 70 1 32 306 1 297 1.34e-152 441
Msa1000530 AT1G04440.1 64.724 326 85 3 32 327 1 326 4.07e-152 440
Msa1000530 AT4G14340.1 66.667 312 81 2 32 321 7 317 5.59e-152 439
Msa1000530 AT4G14340.2 66.667 312 81 2 32 321 7 317 2.71e-151 434
Msa1000530 AT5G43320.2 69.024 297 70 1 32 306 1 297 1.95e-150 432
Msa1000530 AT5G43320.3 69.024 297 70 1 32 306 1 297 1.95e-150 432
Msa1000530 AT3G23340.2 66.443 298 91 2 32 321 1 297 3.03e-145 421
Msa1000530 AT4G08800.1 58.163 294 69 3 32 303 1 262 4.07e-118 346
Msa1000530 AT2G25760.2 34.643 280 146 4 40 282 107 386 1.84e-49 178
Msa1000530 AT3G03940.1 35.336 283 143 6 40 286 140 418 1.47e-48 176
Msa1000530 AT2G25760.1 34.286 280 144 5 40 282 107 383 2.62e-47 172
Msa1000530 AT3G13670.1 33.099 284 151 6 40 287 137 417 1.07e-46 171
Msa1000530 AT5G18190.2 34.035 285 148 6 40 288 130 410 2.70e-46 170
Msa1000530 AT5G18190.1 34.035 285 148 6 40 288 130 410 2.70e-46 170

Find 166 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTATATGTAATTGATTT+TGG 0.199306 6_4:+83442652 Msa1000530:intron
ATTCTTGAGGCGCCTATTTC+GGG 0.201735 6_4:+83443493 Msa1000530:CDS
AAACATGGAGCTGCATATTA+TGG 0.224614 6_4:+83444934 Msa1000530:three_prime_UTR
GATTCTTGAGGCGCCTATTT+CGG 0.235818 6_4:+83443492 Msa1000530:CDS
GCAAGACTATTGCATTTATA+TGG 0.237509 6_4:+83446043 Msa1000530:three_prime_UTR
TTTGATCAGCGACCTGATTA+TGG 0.244829 6_4:+83443470 Msa1000530:CDS
TGAGAAGAAACCATTATTTC+GGG 0.260438 6_4:-83445536 None:intergenic
TTAATTTGTATTGTCATTCT+TGG 0.284570 6_4:+83445847 Msa1000530:three_prime_UTR
TTGAGAAGAAACCATTATTT+CGG 0.289101 6_4:-83445537 None:intergenic
GAGCAAATAACTCCCGAAAT+AGG 0.299908 6_4:-83443505 None:intergenic
TGAATCAGATGCAAAAGTTT+TGG 0.301195 6_4:+83445503 Msa1000530:three_prime_UTR
GCTTCTTTGTCGCAGCCTTT+AGG 0.310608 6_4:-83443255 None:intergenic
AGAATGCACATACTCTATTC+TGG 0.314521 6_4:-83442439 None:intergenic
ACAAAGCCGCCGGGATGATT+TGG 0.324631 6_4:+83443064 Msa1000530:CDS
AATTTGATTATGTATTTGAT+TGG 0.332820 6_4:+83444021 Msa1000530:CDS
CAAGATGACTCCCGAAATAA+TGG 0.332847 6_4:+83445526 Msa1000530:three_prime_UTR
TTGGGCTTGCAAAACGATAT+CGG 0.336257 6_4:+83442671 Msa1000530:CDS
TGCTAAATAAATGCTGAATA+TGG 0.339538 6_4:+83444771 Msa1000530:exon
TACCGCCTGATGATTTAAAC+TGG 0.353819 6_4:-83444387 None:intergenic
TCAGACAATGCCGCTTCTTC+CGG 0.363687 6_4:+83444355 Msa1000530:CDS
ATGATTTGCACTTCTGTAAG+AGG 0.364364 6_4:-83439745 None:intergenic
TCGAAAGAGTGTGAAGTAGA+AGG 0.370593 6_4:-83444625 None:intergenic
GTGCTTGTTATGGATTTGTT+GGG 0.373490 6_4:+83442164 Msa1000530:CDS
GGAAGACAATGTGCTTGTTA+TGG 0.374985 6_4:+83442154 Msa1000530:CDS
AAGTTCCAGTTTAAATCATC+AGG 0.379006 6_4:+83444382 Msa1000530:CDS
GCAAGCTGCAATACTCATCT+TGG 0.385425 6_4:+83442950 Msa1000530:CDS
GCACTTCTGTAAGAGGTTGT+AGG 0.386330 6_4:-83439738 None:intergenic
TAATTTGTATTGTCATTCTT+GGG 0.389870 6_4:+83445848 Msa1000530:three_prime_UTR
TTGAAAAGGAGAAAGAATTC+AGG 0.399931 6_4:+83446240 Msa1000530:three_prime_UTR
TGCTCCCTTGCCCATGCCTA+TGG 0.400254 6_4:-83444699 None:intergenic
GCCCGATTGTTGCTCGCTAC+AGG 0.409927 6_4:-83444190 None:intergenic
AACATGGAGCTGCATATTAT+GGG 0.410482 6_4:+83444935 Msa1000530:three_prime_UTR
AATGACAATACAAATTAATC+TGG 0.413475 6_4:-83445842 None:intergenic
TGTGCTTGTTATGGATTTGT+TGG 0.413619 6_4:+83442163 Msa1000530:CDS
TTCCTGTAGCGAGCAACAAT+CGG 0.414919 6_4:+83444188 Msa1000530:CDS
TTGGCTTCTGAGAATCATCT+TGG 0.415195 6_4:+83444415 Msa1000530:CDS
GGGCAGATGCTTACCTCAAT+AGG 0.418445 6_4:-83443316 None:intergenic
TGGGATGCTCTCAAGATTGC+TGG 0.419241 6_4:+83439769 Msa1000530:CDS
CGCCTCAAGAATCCATAATC+AGG 0.420387 6_4:-83443482 None:intergenic
TAGAAAGTTCAAAACCTGTA+TGG 0.426001 6_4:-83442718 None:intergenic
ATCGGTGATAAATTCAAGTT+AGG 0.432066 6_4:+83440609 Msa1000530:CDS
CCGTCAATGCGGATAATACT+AGG 0.432268 6_4:+83446461 Msa1000530:three_prime_UTR
CGGGATGATTTGGAGTCTCT+TGG 0.432361 6_4:+83443074 Msa1000530:CDS
TGGGCTTGCAAAACGATATC+GGG 0.435539 6_4:+83442672 Msa1000530:CDS
TGGGATGTGGCGATTGGTTG+TGG 0.437079 6_4:-83442698 None:intergenic
GGGCAAGGGAGCAGTAAAAT+TGG 0.439859 6_4:+83444709 Msa1000530:CDS
GAGGATCATATGTATGAAGA+AGG 0.443268 6_4:-83446339 None:intergenic
CACCACTCCATCTTATGCTT+GGG 0.449410 6_4:-83442124 None:intergenic
CGAGTGATATCTCAGATTCA+TGG 0.457921 6_4:+83440578 Msa1000530:intron
ATAGAGTATGTGCATTCTAA+AGG 0.458276 6_4:+83442444 Msa1000530:CDS
CTTGATGTTGGCTGATCAAA+TGG 0.461622 6_4:+83442244 Msa1000530:CDS
ATTTCGGTCCTCAAGGGTTG+AGG 0.463188 6_4:-83446358 None:intergenic
TACTTACGGATATGTGAGGC+TGG 0.464438 6_4:-83444082 None:intergenic
TCATGAAAGATGGAAATATG+AGG 0.469388 6_4:+83446290 Msa1000530:three_prime_UTR
CTCCATGTTTGTATGCATGC+AGG 0.470013 6_4:-83444921 None:intergenic
ACATTCATCCGACTACTTGA+AGG 0.474136 6_4:-83444733 None:intergenic
GGTTCAAGCACCAACCTTGT+TGG 0.476423 6_4:-83444234 None:intergenic
CCTCCATAGGGATATAAAAC+CGG 0.477649 6_4:+83442470 Msa1000530:CDS
ATTCTAAAGGGTTCCTCCAT+AGG 0.479961 6_4:+83442457 Msa1000530:CDS
TGCAATACTCATCTTGGGAT+TGG 0.480350 6_4:+83442956 Msa1000530:CDS
CCTAGTATTATCCGCATTGA+CGG 0.483380 6_4:-83446461 None:intergenic
CAAGCTGCAATACTCATCTT+GGG 0.484146 6_4:+83442951 Msa1000530:CDS
TAAGATGGAGTGGTGTAGAC+GGG 0.495163 6_4:+83442132 Msa1000530:CDS
AGTGGACGCGGAAGGCTTCA+AGG 0.495368 6_4:-83444665 None:intergenic
ACACCACTCCATCTTATGCT+TGG 0.495604 6_4:-83442125 None:intergenic
TTGTTGGTTATCAATATCCA+TGG 0.497091 6_4:-83444218 None:intergenic
AGGTCAAAGAATGGCAGTAA+TGG 0.499416 6_4:-83443448 None:intergenic
TCCTGTAGCGAGCAACAATC+GGG 0.501671 6_4:+83444189 Msa1000530:CDS
TTGTTGCTCGCTACAGGAAC+CGG 0.502364 6_4:-83444184 None:intergenic
GCTTGCATAACGCGCAGTCC+CGG 0.502927 6_4:-83442933 None:intergenic
ATGTAGAGTAAATGACATCT+AGG 0.503049 6_4:+83446133 Msa1000530:three_prime_UTR
TAGAGTATGTGCATTCTAAA+GGG 0.503360 6_4:+83442445 Msa1000530:CDS
CCTTCCCTGGCAAAACCTAA+AGG 0.504434 6_4:+83443240 Msa1000530:CDS
AATTCTTATTTCGGTCCTCA+AGG 0.504557 6_4:-83446365 None:intergenic
TGCGGATAATACTAGGTCAC+CGG 0.506596 6_4:+83446468 Msa1000530:three_prime_UTR
AATGTCCACATCCATTGAAA+AGG 0.507973 6_4:+83446226 Msa1000530:three_prime_UTR
TAATTGTGTTTAGCCTTCCC+TGG 0.508361 6_4:+83443227 Msa1000530:intron
CTAAGTAATATCTCTTCATA+CGG 0.509034 6_4:+83446168 Msa1000530:three_prime_UTR
AACTAAAATCTCAATGTCAC+AGG 0.515231 6_4:-83446436 None:intergenic
CCTCAAAACTGTCTTGATGT+TGG 0.516363 6_4:+83442232 Msa1000530:CDS
GAAAGTATCAACTCCTATTG+AGG 0.519371 6_4:+83443303 Msa1000530:CDS
ACTTGGTCGGAAGGCAAACC+TGG 0.520669 6_4:+83442509 Msa1000530:CDS
TTAGGACGCAAGATCGGAAG+TGG 0.521534 6_4:+83440627 Msa1000530:CDS
TTTCATTCTTTAACCCATGT+AGG 0.521760 6_4:-83446109 None:intergenic
TTCTAAAGGGTTCCTCCATA+GGG 0.522924 6_4:+83442458 Msa1000530:CDS
CATGAAAGATGGAAATATGA+GGG 0.523975 6_4:+83446291 Msa1000530:three_prime_UTR
AAGATCGGAAGTGGATCCTT+CGG 0.526716 6_4:+83440636 Msa1000530:CDS
AGAAAGTTCAAAACCTGTAT+GGG 0.527700 6_4:-83442717 None:intergenic
CGGGAGTTATTTGCTCGAGA+AGG 0.530876 6_4:+83443512 Msa1000530:CDS
GTGGTATCCCAAGCATAAGA+TGG 0.531050 6_4:+83442117 Msa1000530:CDS
ATGGTGGAGATCATGAAAGA+TGG 0.532717 6_4:+83446280 Msa1000530:three_prime_UTR
CCAATCGCCACATCCCATAC+AGG 0.535975 6_4:+83442704 Msa1000530:CDS
CGAAAGAGTGTGAAGTAGAA+GGG 0.539972 6_4:-83444624 None:intergenic
GATAACTTTCTCATGGGACT+TGG 0.540360 6_4:+83442492 Msa1000530:CDS
AAGTACGAAGCAAACTCTAC+AGG 0.544026 6_4:-83443425 None:intergenic
ATATCTCTTCATACGGGCGA+TGG 0.546786 6_4:+83446175 Msa1000530:three_prime_UTR
CCTATGGTTTGCAGCTTCAG+TGG 0.548768 6_4:-83444683 None:intergenic
ATGGATCCTCTCGTGTCATG+AGG 0.549642 6_4:+83446194 Msa1000530:three_prime_UTR
CTAAGGAAGTGATTAATGGA+AGG 0.549883 6_4:+83439691 None:intergenic
TCCTTCGGTGAAATCTATCT+CGG 0.549980 6_4:+83440651 Msa1000530:CDS
TTCAAGTTAGGACGCAAGAT+CGG 0.551617 6_4:+83440621 Msa1000530:CDS
TTTGTTGGGGCCTAGTCTTG+AGG 0.553272 6_4:+83442178 Msa1000530:CDS
TTCAAAACCTGTATGGGATG+TGG 0.553955 6_4:-83442711 None:intergenic
CAACAATCGGGCAATGCCCA+TGG 0.556507 6_4:+83444201 Msa1000530:CDS
CTAGTATTATCCGCATTGAC+GGG 0.559171 6_4:-83446460 None:intergenic
AAACCGGATAACTTTCTCAT+GGG 0.561522 6_4:+83442486 Msa1000530:CDS
AGGATCATATGTATGAAGAA+GGG 0.561771 6_4:-83446338 None:intergenic
TCCATGTTTGTATGCATGCA+GGG 0.561985 6_4:-83444920 None:intergenic
GCAAACCATAGGCATGGGCA+AGG 0.564524 6_4:+83444694 Msa1000530:CDS
TCTCATGGGACTTGGTCGGA+AGG 0.565028 6_4:+83442500 Msa1000530:CDS
GAAGCTGCAAACCATAGGCA+TGG 0.565598 6_4:+83444688 Msa1000530:CDS
AGATTCATGGATCGAATCAT+CGG 0.566316 6_4:+83440591 Msa1000530:intron
GCAGCTTCAGTGGACGCGGA+AGG 0.566995 6_4:-83444673 None:intergenic
ATAAGATGGAGTGGTGTAGA+CGG 0.572946 6_4:+83442131 Msa1000530:CDS
ATAATCAGGTCGCTGATCAA+AGG 0.572957 6_4:-83443468 None:intergenic
AAAACCGGATAACTTTCTCA+TGG 0.575825 6_4:+83442485 Msa1000530:CDS
CCACTGAAGCTGCAAACCAT+AGG 0.576164 6_4:+83444683 Msa1000530:CDS
TAAGGAAGTGATTAATGGAA+GGG 0.576446 6_4:+83439692 None:intergenic
AGTCCCATGAGAAAGTTATC+CGG 0.577140 6_4:-83442489 None:intergenic
TGCTTGTTATGGATTTGTTG+GGG 0.580128 6_4:+83442165 Msa1000530:CDS
GTTTGCAGCTTCAGTGGACG+CGG 0.581258 6_4:-83444677 None:intergenic
GGATCATATGTATGAAGAAG+GGG 0.581680 6_4:-83446337 None:intergenic
ATTCTTATTTCGGTCCTCAA+GGG 0.584402 6_4:-83446364 None:intergenic
TATTGATACCTTCGAGATCG+TGG 0.587569 6_4:+83440781 Msa1000530:CDS
GCTGATCAAAGGTCAAAGAA+TGG 0.590024 6_4:-83443457 None:intergenic
TGGATCCTCTCGTGTCATGA+GGG 0.590161 6_4:+83446195 Msa1000530:three_prime_UTR
ACTTTCTCATGGGACTTGGT+CGG 0.592057 6_4:+83442496 Msa1000530:CDS
ACGAAGCAAACTCTACAGGA+TGG 0.592572 6_4:-83443421 None:intergenic
GGTTTCTTCTCAAACATCAA+AGG 0.593041 6_4:+83445547 Msa1000530:three_prime_UTR
TAAGTAATATCTCTTCATAC+GGG 0.594223 6_4:+83446169 Msa1000530:three_prime_UTR
AAGCTGCAAACCATAGGCAT+GGG 0.597512 6_4:+83444689 Msa1000530:CDS
ATTTGTAGAACAAAGCCGCC+GGG 0.602617 6_4:+83443055 Msa1000530:intron
CCTGTATGGGATGTGGCGAT+TGG 0.602796 6_4:-83442704 None:intergenic
CTTGACAGCCACGATCTCGA+AGG 0.603527 6_4:-83440789 None:intergenic
TGTTGGTTATCAATATCCAT+GGG 0.604040 6_4:-83444217 None:intergenic
GAACTTAACACCGGAAGAAG+CGG 0.606399 6_4:-83444365 None:intergenic
AAATTGGTCCTTCAAGTAGT+CGG 0.607497 6_4:+83444725 Msa1000530:CDS
TACAGAAGTGCAAATCATGT+GGG 0.607633 6_4:+83439750 Msa1000530:CDS
ACTCTTTCGAAGCATCAAGA+AGG 0.609101 6_4:+83444638 Msa1000530:CDS
CGAAGCAAACTCTACAGGAT+GGG 0.611082 6_4:-83443420 None:intergenic
TTACAGAAGTGCAAATCATG+TGG 0.616500 6_4:+83439749 Msa1000530:CDS
GCGGATAATACTAGGTCACC+GGG 0.617014 6_4:+83446469 Msa1000530:three_prime_UTR
ATCCCAAGCATAAGATGGAG+TGG 0.620505 6_4:+83442122 Msa1000530:CDS
ACCGAGATAGATTTCACCGA+AGG 0.620573 6_4:-83440652 None:intergenic
CAAGAGACTCCAAATCATCC+CGG 0.622494 6_4:-83443073 None:intergenic
TTTAAACTGGAACTTAACAC+CGG 0.623764 6_4:-83444374 None:intergenic
TAGCACATTAGTAGTCTCCA+CGG 0.624278 6_4:-83444980 None:intergenic
TCCCTGCATGCATACAAACA+TGG 0.628565 6_4:+83444919 Msa1000530:three_prime_UTR
TTCCAGTTTAAATCATCAGG+CGG 0.630569 6_4:+83444385 Msa1000530:CDS
ACTTACGGATATGTGAGGCT+GGG 0.634330 6_4:-83444081 None:intergenic
TATTTGTAGAACAAAGCCGC+CGG 0.642128 6_4:+83443054 Msa1000530:intron
AGCACATTAGTAGTCTCCAC+GGG 0.644849 6_4:-83444979 None:intergenic
CAAACCATAGGCATGGGCAA+GGG 0.646006 6_4:+83444695 Msa1000530:CDS
ACAAGAACTAGCACAAGACC+CGG 0.647326 6_4:-83446487 None:intergenic
CATATGATCCTCAACCCTTG+AGG 0.650580 6_4:+83446350 Msa1000530:three_prime_UTR
AATATACTTACGGATATGTG+AGG 0.660737 6_4:-83444086 None:intergenic
ACATGGAGCTGCATATTATG+GGG 0.661231 6_4:+83444936 Msa1000530:three_prime_UTR
AAGATGGAGTGGTGTAGACG+GGG 0.662328 6_4:+83442133 Msa1000530:CDS
GAGACTACTAATGTGCTACA+AGG 0.662601 6_4:+83444985 Msa1000530:three_prime_UTR
GACCTGATTATGGATTCTTG+AGG 0.667363 6_4:+83443480 Msa1000530:CDS
TAGAGTAAATGACATCTAGG+TGG 0.693050 6_4:+83446136 Msa1000530:three_prime_UTR
GAATGCCATACCTTCCTCTG+AGG 0.704652 6_4:-83443115 None:intergenic
ATAGACCCTCATGACACGAG+AGG 0.706477 6_4:-83446200 None:intergenic
ATGGATATTGATAACCAACA+AGG 0.718739 6_4:+83444220 Msa1000530:CDS
TTATACAGGGGATGTCTCAG+CGG 0.724472 6_4:+83444321 Msa1000530:intron
GAGACTCCAAATCATCCCGG+CGG 0.750112 6_4:-83443070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTATTATTATTAT+TGG + chr6_4:83440706-83440725 Msa1000530:intron 0.0%
!! AAAAAATGAAAATAAAGAAT+TGG - chr6_4:83440829-83440848 None:intergenic 10.0%
!!! TTTTTAATTTTGTTGATTTT+CGG + chr6_4:83441478-83441497 Msa1000530:intron 10.0%
!!! ACATGTTTTTTTATTTTATT+TGG + chr6_4:83442406-83442425 Msa1000530:intron 10.0%
!!! CATGTTTTTTTATTTTATTT+GGG + chr6_4:83442407-83442426 Msa1000530:intron 10.0%
!!! ATTCATTAAGTATTAATTTT+GGG - chr6_4:83442884-83442903 None:intergenic 10.0%
!!! AATTCATTAAGTATTAATTT+TGG - chr6_4:83442885-83442904 None:intergenic 10.0%
!! ATAAAAAAATTGATGTTAAA+TGG + chr6_4:83443854-83443873 Msa1000530:intron 10.0%
!! TAAAAAAATTGATGTTAAAT+GGG + chr6_4:83443855-83443874 Msa1000530:intron 10.0%
!!! AAAAAATTAATATTTTCAGA+TGG - chr6_4:83444154-83444173 None:intergenic 10.0%
!! ATAAACAACATATTAAAATT+TGG - chr6_4:83444573-83444592 None:intergenic 10.0%
!!! TTATTATTTTTGTAGATTTT+TGG + chr6_4:83444589-83444608 Msa1000530:intron 10.0%
!! TATATATGAGTTTACTTTAA+AGG - chr6_4:83439992-83440011 None:intergenic 15.0%
!! TTTAATTAATCATGAATGAA+CGG + chr6_4:83440073-83440092 Msa1000530:intron 15.0%
!! TTATATGAATTAAAAGTTGA+AGG + chr6_4:83440108-83440127 Msa1000530:intron 15.0%
!! GTAAAGTTAATATATTTACT+AGG + chr6_4:83440153-83440172 Msa1000530:intron 15.0%
!! AAATGTCAAATATGAAATAT+CGG - chr6_4:83441762-83441781 None:intergenic 15.0%
!!! TTTTTTTATGAATGAAGTTT+AGG - chr6_4:83443815-83443834 None:intergenic 15.0%
!! AATTTGATTATGTATTTGAT+TGG + chr6_4:83444021-83444040 Msa1000530:CDS 15.0%
!!! GGTTTAAATTTTGTTATTAA+AGG + chr6_4:83445669-83445688 Msa1000530:intron 15.0%
!!! ATCAAAAACAATTCTTATTT+CGG - chr6_4:83446377-83446396 None:intergenic 15.0%
!! TTAATTAATCATGAATGAAC+GGG + chr6_4:83440074-83440093 Msa1000530:intron 20.0%
!!! AGTTGAAGGAAATTTTTATA+AGG + chr6_4:83440122-83440141 Msa1000530:intron 20.0%
!! TTAACATTGTGTTAATTACA+TGG - chr6_4:83440195-83440214 None:intergenic 20.0%
!!! AAATTTGTTGAAAGTATGTT+TGG - chr6_4:83441119-83441138 None:intergenic 20.0%
!! ACAACAATGAAAATAATGAA+AGG - chr6_4:83441599-83441618 None:intergenic 20.0%
!!! TTTCATTATTTTCATTGTTG+TGG + chr6_4:83441598-83441617 Msa1000530:intron 20.0%
!!! TTCATTATTTTCATTGTTGT+GGG + chr6_4:83441599-83441618 Msa1000530:intron 20.0%
!!! TCCCTAAAAATTGTATTTTT+AGG + chr6_4:83441704-83441723 Msa1000530:intron 20.0%
!!! CCCTAAAAATACAATTTTTA+GGG - chr6_4:83441708-83441727 None:intergenic 20.0%
!!! CCCTAAAAATTGTATTTTTA+GGG + chr6_4:83441705-83441724 Msa1000530:intron 20.0%
!!! TCCCTAAAAATACAATTTTT+AGG - chr6_4:83441709-83441728 None:intergenic 20.0%
!!! TTTCATATTTGACATTTTAG+AGG + chr6_4:83441765-83441784 Msa1000530:intron 20.0%
!!! AGGTATATGTAATTGATTTT+GGG + chr6_4:83442653-83442672 Msa1000530:intron 20.0%
!!! GAATTAACAATGGATTATAA+TGG - chr6_4:83442744-83442763 None:intergenic 20.0%
!! TAAAGTGAATGAATTAACAA+TGG - chr6_4:83442754-83442773 None:intergenic 20.0%
!!! TTAATTTTGGGTATTTCTAA+GGG - chr6_4:83442872-83442891 None:intergenic 20.0%
!!! ATTAATTTTGGGTATTTCTA+AGG - chr6_4:83442873-83442892 None:intergenic 20.0%
!!! TTAATGAATTTTACAACACA+GGG + chr6_4:83442895-83442914 Msa1000530:intron 20.0%
!!! AGTATATGTTCTGATTTTTA+CGG + chr6_4:83443197-83443216 Msa1000530:intron 20.0%
!! ATAACAAAGAAATAAGCATT+TGG - chr6_4:83443353-83443372 None:intergenic 20.0%
!!! ATTAATATTTTCAGATGGAT+TGG - chr6_4:83444149-83444168 None:intergenic 20.0%
!! TTATGCAGAAGAAAAAAATA+TGG - chr6_4:83444258-83444277 None:intergenic 20.0%
!!! TTGTAGATAATTTTCAAGTA+TGG + chr6_4:83445125-83445144 Msa1000530:intron 20.0%
!!! TTGATAATATTACAAATTGC+AGG + chr6_4:83445274-83445293 Msa1000530:intron 20.0%
!! CCTAAAGTTTAAATATTAAG+AGG - chr6_4:83445651-83445670 None:intergenic 20.0%
!! CCTCTTAATATTTAAACTTT+AGG + chr6_4:83445648-83445667 Msa1000530:intron 20.0%
!!! TATTAAAGGAACATTTTCAA+AGG + chr6_4:83445683-83445702 Msa1000530:intron 20.0%
!! AATGACAATACAAATTAATC+TGG - chr6_4:83445845-83445864 None:intergenic 20.0%
!!! TTAATTTGTATTGTCATTCT+TGG + chr6_4:83445847-83445866 Msa1000530:three_prime_UTR 20.0%
!!! TAATTTGTATTGTCATTCTT+GGG + chr6_4:83445848-83445867 Msa1000530:three_prime_UTR 20.0%
!!! CTCTTTTTTTCTAATCTATA+TGG + chr6_4:83446005-83446024 Msa1000530:three_prime_UTR 20.0%
!!! TTTTTGATCATAATGTTTGT+TGG + chr6_4:83446389-83446408 Msa1000530:three_prime_UTR 20.0%
! AAAACGTGGACTTATTTATA+GGG - chr6_4:83439898-83439917 None:intergenic 25.0%
!!! AAGCTGAGAATTTTTTTAGA+GGG - chr6_4:83439929-83439948 None:intergenic 25.0%
!!! AAAGCTGAGAATTTTTTTAG+AGG - chr6_4:83439930-83439949 None:intergenic 25.0%
! TAATTAATCATGAATGAACG+GGG + chr6_4:83440075-83440094 Msa1000530:intron 25.0%
! CGTTGAATAATTTATGTATG+TGG - chr6_4:83440321-83440340 None:intergenic 25.0%
! TCTAAACCACATACATAAAT+CGG + chr6_4:83440312-83440331 Msa1000530:intron 25.0%
! AAGAGAATTTGATTGATTGA+AGG - chr6_4:83440683-83440702 None:intergenic 25.0%
! TTGTGTAAATTGAATTGAAC+TGG + chr6_4:83440869-83440888 Msa1000530:intron 25.0%
!!! TAGCGTATGTTTTTTTATCA+CGG + chr6_4:83440893-83440912 Msa1000530:intron 25.0%
! AAACTTTCTTTAAGCATGTT+TGG - chr6_4:83440981-83441000 None:intergenic 25.0%
! TTGAAGAATATTATAGAGCT+TGG - chr6_4:83441555-83441574 None:intergenic 25.0%
! AAGCTCTATAATATTCTTCA+AGG + chr6_4:83441554-83441573 Msa1000530:intron 25.0%
! AGAAATGAAATGTGTCAATT+TGG + chr6_4:83441661-83441680 Msa1000530:intron 25.0%
!! TCGACATTTTTCATTTCTTT+AGG + chr6_4:83441794-83441813 Msa1000530:intron 25.0%
!!! TCATTTCTTTAGGATCAAAT+AGG + chr6_4:83441804-83441823 Msa1000530:intron 25.0%
! TGGGATTTAATTGAAAATGT+TGG + chr6_4:83442074-83442093 Msa1000530:intron 25.0%
!!! GGATTTTGTTTAATTAATGC+AGG + chr6_4:83442095-83442114 Msa1000530:intron 25.0%
!!! TTTTGTTTAATTAATGCAGG+TGG + chr6_4:83442098-83442117 Msa1000530:intron 25.0%
! ACTGACTAAAAAACATCATA+AGG - chr6_4:83442304-83442323 None:intergenic 25.0%
! TAACTGTATATTCATTTACC+AGG - chr6_4:83442530-83442549 None:intergenic 25.0%
!!! CAGGTATATGTAATTGATTT+TGG + chr6_4:83442652-83442671 Msa1000530:intron 25.0%
! TTCAACATTAACATCAAATC+CGG - chr6_4:83442796-83442815 None:intergenic 25.0%
!! CTTAATGAATTTTACAACAC+AGG + chr6_4:83442894-83442913 Msa1000530:intron 25.0%
!! AGCATTTGGAATAGTTATAT+GGG - chr6_4:83443339-83443358 None:intergenic 25.0%
!! AAGCATTTGGAATAGTTATA+TGG - chr6_4:83443340-83443359 None:intergenic 25.0%
!! TTTTATGAATGAAGTTTAGG+TGG - chr6_4:83443812-83443831 None:intergenic 25.0%
! CACACACATAAATATACTTA+CGG - chr6_4:83444099-83444118 None:intergenic 25.0%
!!! TAATTTTTTCTTATTGCAGC+CGG + chr6_4:83444165-83444184 Msa1000530:intron 25.0%
! ACAATGATTAATGCTTATAC+AGG + chr6_4:83444307-83444326 Msa1000530:intron 25.0%
! CAATGATTAATGCTTATACA+GGG + chr6_4:83444308-83444327 Msa1000530:intron 25.0%
! AATGATTAATGCTTATACAG+GGG + chr6_4:83444309-83444328 Msa1000530:intron 25.0%
!! TTCACAAGTTTGAAACATAA+AGG - chr6_4:83444531-83444550 None:intergenic 25.0%
! TGCTAAATAAATGCTGAATA+TGG + chr6_4:83444771-83444790 Msa1000530:exon 25.0%
! TGAGTACTATTGTCTATATA+TGG + chr6_4:83444828-83444847 Msa1000530:intron 25.0%
! TGTAAAATTAATGTGTGATG+TGG + chr6_4:83445179-83445198 Msa1000530:intron 25.0%
! TTGAGAAGAAACCATTATTT+CGG - chr6_4:83445540-83445559 None:intergenic 25.0%
!!! TCAAACATTTCTTGATTTGT+AGG + chr6_4:83445800-83445819 Msa1000530:intron 25.0%
!!! TTTACATTTGTTTCTTTTGC+AGG + chr6_4:83445981-83446000 Msa1000530:intron 25.0%
!! TTTTCTAATCTATATGGCAA+TGG + chr6_4:83446011-83446030 Msa1000530:three_prime_UTR 25.0%
! CCAAAAAGAAAAAATGTAGA+TGG - chr6_4:83446072-83446091 None:intergenic 25.0%
!!! CCATCTACATTTTTTCTTTT+TGG + chr6_4:83446069-83446088 Msa1000530:three_prime_UTR 25.0%
!!! TCTACATTTTTTCTTTTTGG+AGG + chr6_4:83446072-83446091 Msa1000530:three_prime_UTR 25.0%
!!! ATTTCCTTTTTTAACCTACA+TGG + chr6_4:83446095-83446114 Msa1000530:three_prime_UTR 25.0%
!!! TTTCCTTTTTTAACCTACAT+GGG + chr6_4:83446096-83446115 Msa1000530:three_prime_UTR 25.0%
! CTAAGTAATATCTCTTCATA+CGG + chr6_4:83446168-83446187 Msa1000530:three_prime_UTR 25.0%
! TAAGTAATATCTCTTCATAC+GGG + chr6_4:83446169-83446188 Msa1000530:three_prime_UTR 25.0%
!!! GGAAAAAAAGTGAGTTTTAA+TGG + chr6_4:83446261-83446280 Msa1000530:three_prime_UTR 25.0%
!!! AAAAAAGTGAGTTTTAATGG+TGG + chr6_4:83446264-83446283 Msa1000530:three_prime_UTR 25.0%
CAAAACGTGGACTTATTTAT+AGG - chr6_4:83439899-83439918 None:intergenic 30.0%
! TTCTTGTAAATAGTACCGAA+TGG - chr6_4:83440234-83440253 None:intergenic 30.0%
AATGAAATGAATTCAACACG+CGG - chr6_4:83440482-83440501 None:intergenic 30.0%
! ATCGGTGATAAATTCAAGTT+AGG + chr6_4:83440609-83440628 Msa1000530:CDS 30.0%
TACCAAACATGACAATAACA+TGG - chr6_4:83441028-83441047 None:intergenic 30.0%
TATTGTCATGTTTGGTATCA+TGG + chr6_4:83441031-83441050 Msa1000530:intron 30.0%
! ATGAACTATAGTGATTTGCA+TGG + chr6_4:83441396-83441415 Msa1000530:intron 30.0%
! CAAAAGTATGTTTGGTATCA+CGG - chr6_4:83441446-83441465 None:intergenic 30.0%
! GCTAAAACCAAAAGTATGTT+TGG - chr6_4:83441454-83441473 None:intergenic 30.0%
CTCTATAATATTCTTCAAGG+AGG + chr6_4:83441557-83441576 Msa1000530:intron 30.0%
!!! GGATATTTTAGTTTCTGTCA+AGG + chr6_4:83441726-83441745 Msa1000530:intron 30.0%
! TTGCTATTGTTATTGTTGCT+GGG + chr6_4:83442055-83442074 Msa1000530:intron 30.0%
GCACAAATAACATATACTCT+GGG - chr6_4:83442327-83442346 None:intergenic 30.0%
ATAGAGTATGTGCATTCTAA+AGG + chr6_4:83442444-83442463 Msa1000530:CDS 30.0%
TAGAGTATGTGCATTCTAAA+GGG + chr6_4:83442445-83442464 Msa1000530:CDS 30.0%
ATCGGTCAATTCTAAATGTA+GGG - chr6_4:83442563-83442582 None:intergenic 30.0%
AATCGGTCAATTCTAAATGT+AGG - chr6_4:83442564-83442583 None:intergenic 30.0%
AGAAAGTTCAAAACCTGTAT+GGG - chr6_4:83442720-83442739 None:intergenic 30.0%
TAGAAAGTTCAAAACCTGTA+TGG - chr6_4:83442721-83442740 None:intergenic 30.0%
TCAAATCCGGTAAAAAAAGA+GGG - chr6_4:83442783-83442802 None:intergenic 30.0%
ATCAAATCCGGTAAAAAAAG+AGG - chr6_4:83442784-83442803 None:intergenic 30.0%
! TGCAATTTGTTTGATGTGAA+GGG - chr6_4:83443005-83443024 None:intergenic 30.0%
! TTGCAATTTGTTTGATGTGA+AGG - chr6_4:83443006-83443025 None:intergenic 30.0%
GGCATTCTTATCTAGTTATT+TGG + chr6_4:83443131-83443150 Msa1000530:intron 30.0%
ATACTTATGTTGCTCTCAAT+AGG - chr6_4:83443182-83443201 None:intergenic 30.0%
!!! ATTTGTCTGTTGTTTTGTGT+AGG + chr6_4:83443385-83443404 Msa1000530:intron 30.0%
! AATATGAATTTTGCGTATGG+AGG - chr6_4:83443908-83443927 None:intergenic 30.0%
! CAGAATATGAATTTTGCGTA+TGG - chr6_4:83443911-83443930 None:intergenic 30.0%
GCAAAATTCATATTCTGTTG+TGG + chr6_4:83443914-83443933 Msa1000530:intron 30.0%
AATATACTTACGGATATGTG+AGG - chr6_4:83444089-83444108 None:intergenic 30.0%
! TGTTGGTTATCAATATCCAT+GGG - chr6_4:83444220-83444239 None:intergenic 30.0%
! TTGTTGGTTATCAATATCCA+TGG - chr6_4:83444221-83444240 None:intergenic 30.0%
! ATGGATATTGATAACCAACA+AGG + chr6_4:83444220-83444239 Msa1000530:CDS 30.0%
! ATATTGATAACCAACAAGGT+TGG + chr6_4:83444224-83444243 Msa1000530:intron 30.0%
TTTAAACTGGAACTTAACAC+CGG - chr6_4:83444377-83444396 None:intergenic 30.0%
AAGTTCCAGTTTAAATCATC+AGG + chr6_4:83444382-83444401 Msa1000530:CDS 30.0%
TTCAAACTTGTGAAATAGAC+TGG + chr6_4:83444537-83444556 Msa1000530:intron 30.0%
! TGCTGAATATGGTAATTTTC+TGG + chr6_4:83444782-83444801 Msa1000530:intron 30.0%
! ATTTCTTAGCTCATCTTTTG+AGG + chr6_4:83445015-83445034 Msa1000530:intron 30.0%
CTATGTCACCACTTATTATA+CGG - chr6_4:83445239-83445258 None:intergenic 30.0%
TAATAAGTGGTGACATAGTT+TGG + chr6_4:83445241-83445260 Msa1000530:intron 30.0%
TGAATCATCAATCCATGAAA+TGG + chr6_4:83445435-83445454 Msa1000530:intron 30.0%
! TGAATCAGATGCAAAAGTTT+TGG + chr6_4:83445503-83445522 Msa1000530:three_prime_UTR 30.0%
TGAGAAGAAACCATTATTTC+GGG - chr6_4:83445539-83445558 None:intergenic 30.0%
! TCAAACATCAAAGGTAGTTT+TGG + chr6_4:83445556-83445575 Msa1000530:intron 30.0%
! AATATTAAGAGGTGCACATA+GGG - chr6_4:83445640-83445659 None:intergenic 30.0%
! AAATATTAAGAGGTGCACAT+AGG - chr6_4:83445641-83445660 None:intergenic 30.0%
!!! GTTTTATTTCAATGTGACCA+AGG + chr6_4:83445888-83445907 Msa1000530:three_prime_UTR 30.0%
!! ATTTGCAATTAGCTTTACAC+AGG - chr6_4:83445943-83445962 None:intergenic 30.0%
GCAAGACTATTGCATTTATA+TGG + chr6_4:83446043-83446062 Msa1000530:three_prime_UTR 30.0%
TAACCCATGTAGGTTAAAAA+AGG - chr6_4:83446102-83446121 None:intergenic 30.0%
TTTCATTCTTTAACCCATGT+AGG - chr6_4:83446112-83446131 None:intergenic 30.0%
ATGTAGAGTAAATGACATCT+AGG + chr6_4:83446133-83446152 Msa1000530:three_prime_UTR 30.0%
! GAATTCTTTCTCCTTTTCAA+TGG - chr6_4:83446240-83446259 None:intergenic 30.0%
TTGAAAAGGAGAAAGAATTC+AGG + chr6_4:83446240-83446259 Msa1000530:three_prime_UTR 30.0%
TCATGAAAGATGGAAATATG+AGG + chr6_4:83446290-83446309 Msa1000530:three_prime_UTR 30.0%
CATGAAAGATGGAAATATGA+GGG + chr6_4:83446291-83446310 Msa1000530:three_prime_UTR 30.0%
AGGATCATATGTATGAAGAA+GGG - chr6_4:83446341-83446360 None:intergenic 30.0%
AACTAAAATCTCAATGTCAC+AGG - chr6_4:83446439-83446458 None:intergenic 30.0%
! ATGATTTGCACTTCTGTAAG+AGG - chr6_4:83439748-83439767 None:intergenic 35.0%
! TTACAGAAGTGCAAATCATG+TGG + chr6_4:83439749-83439768 Msa1000530:CDS 35.0%
! TACAGAAGTGCAAATCATGT+GGG + chr6_4:83439750-83439769 Msa1000530:CDS 35.0%
AATATGTCCACTCGAACATA+GGG - chr6_4:83439843-83439862 None:intergenic 35.0%
AAATATGTCCACTCGAACAT+AGG - chr6_4:83439844-83439863 None:intergenic 35.0%
AGAGGGATTAAAACAAAACG+TGG - chr6_4:83439912-83439931 None:intergenic 35.0%
! TCATTCGTAGTTTTCCATTG+CGG + chr6_4:83440497-83440516 Msa1000530:intron 35.0%
AGATTCATGGATCGAATCAT+CGG + chr6_4:83440591-83440610 Msa1000530:intron 35.0%
AGCCATGTTATTGTCATGTT+TGG + chr6_4:83441023-83441042 Msa1000530:intron 35.0%
! TGCATGGTTTACTGTGATTT+TGG + chr6_4:83441412-83441431 Msa1000530:intron 35.0%
! CGTGATACCAAACATACTTT+TGG + chr6_4:83441444-83441463 Msa1000530:intron 35.0%
TTGGCTTCATAAAGCAATTG+TGG - chr6_4:83441536-83441555 None:intergenic 35.0%
GCACAACTTGAGATTAAATG+CGG + chr6_4:83441621-83441640 Msa1000530:intron 35.0%
TTTAGGGACAATTGAGACAT+TGG - chr6_4:83441692-83441711 None:intergenic 35.0%
AGGTGTTCATGTATTAACTC+AGG + chr6_4:83441824-83441843 Msa1000530:intron 35.0%
AATGTTGTCAATCGCAGATT+GGG - chr6_4:83441984-83442003 None:intergenic 35.0%
!! CTTGCTATTGTTATTGTTGC+TGG + chr6_4:83442054-83442073 Msa1000530:intron 35.0%
!! TGTGCTTGTTATGGATTTGT+TGG + chr6_4:83442163-83442182 Msa1000530:CDS 35.0%
!! GTGCTTGTTATGGATTTGTT+GGG + chr6_4:83442164-83442183 Msa1000530:CDS 35.0%
!! TGCTTGTTATGGATTTGTTG+GGG + chr6_4:83442165-83442184 Msa1000530:CDS 35.0%
ACAAAAAGATCCTCAAGACT+AGG - chr6_4:83442191-83442210 None:intergenic 35.0%
!! GAGGATCTTTTTGTTTACTG+TGG + chr6_4:83442197-83442216 Msa1000530:CDS 35.0%
!! CAACATCAAGACAGTTTTGA+GGG - chr6_4:83442234-83442253 None:intergenic 35.0%
TACGAAAGCCAGAACTAAAA+GGG - chr6_4:83442280-83442299 None:intergenic 35.0%
GGCACAAATAACATATACTC+TGG - chr6_4:83442328-83442347 None:intergenic 35.0%
ATAATCACATGACAAGACAG+TGG - chr6_4:83442349-83442368 None:intergenic 35.0%
AGAATGCACATACTCTATTC+TGG - chr6_4:83442442-83442461 None:intergenic 35.0%
!! TATCCGGTTTTATATCCCTA+TGG - chr6_4:83442476-83442495 None:intergenic 35.0%
AAAACCGGATAACTTTCTCA+TGG + chr6_4:83442485-83442504 Msa1000530:CDS 35.0%
AAACCGGATAACTTTCTCAT+GGG + chr6_4:83442486-83442505 Msa1000530:CDS 35.0%
!!! TTTCTCCCCTCTTTTTTTAC+CGG + chr6_4:83442774-83442793 Msa1000530:intron 35.0%
CAAATCCGGTAAAAAAAGAG+GGG - chr6_4:83442782-83442801 None:intergenic 35.0%
AGGGAGAACAAAAACTTAAC+CGG + chr6_4:83442914-83442933 Msa1000530:intron 35.0%
!! GAAAGTATCAACTCCTATTG+AGG + chr6_4:83443303-83443322 Msa1000530:CDS 35.0%
TATTCCATTCCACAAAGATG+TGG + chr6_4:83443668-83443687 Msa1000530:intron 35.0%
ATTCCATTCCACAAAGATGT+GGG + chr6_4:83443669-83443688 Msa1000530:intron 35.0%
TCATAAACCAGAAATGAGTG+GGG - chr6_4:83443992-83444011 None:intergenic 35.0%
GTCATAAACCAGAAATGAGT+GGG - chr6_4:83443993-83444012 None:intergenic 35.0%
TGTCATAAACCAGAAATGAG+TGG - chr6_4:83443994-83444013 None:intergenic 35.0%
!! ACTCATTTCTGGTTTATGAC+AGG + chr6_4:83443993-83444012 Msa1000530:intron 35.0%
TTCCAGTTTAAATCATCAGG+CGG + chr6_4:83444385-83444404 Msa1000530:CDS 35.0%
ATCATCAGGCGGTAAAAATT+TGG + chr6_4:83444396-83444415 Msa1000530:CDS 35.0%
AGAATGTAAGTCGTCTTACT+TGG + chr6_4:83444440-83444459 Msa1000530:intron 35.0%
TCGTCTTACTTGGAGTAAAA+AGG + chr6_4:83444450-83444469 Msa1000530:intron 35.0%
AAATTGGTCCTTCAAGTAGT+CGG + chr6_4:83444725-83444744 Msa1000530:CDS 35.0%
GTATACTGTGCTATGTTTCT+AGG + chr6_4:83444875-83444894 Msa1000530:intron 35.0%
AAACATGGAGCTGCATATTA+TGG + chr6_4:83444934-83444953 Msa1000530:three_prime_UTR 35.0%
AACATGGAGCTGCATATTAT+GGG + chr6_4:83444935-83444954 Msa1000530:three_prime_UTR 35.0%
AATCATTTGCAGTCACCTTA+GGG - chr6_4:83445064-83445083 None:intergenic 35.0%
GTATAAAATACAGACTGCAC+AGG + chr6_4:83445089-83445108 Msa1000530:intron 35.0%
GATTTGTGCCGTATAATAAG+TGG + chr6_4:83445228-83445247 Msa1000530:intron 35.0%
! GGTCATACATTCTGAAAACA+AGG - chr6_4:83445479-83445498 None:intergenic 35.0%
! CTTTTGCATCTGATTCATTG+TGG - chr6_4:83445500-83445519 None:intergenic 35.0%
GGTTTCTTCTCAAACATCAA+AGG + chr6_4:83445547-83445566 Msa1000530:three_prime_UTR 35.0%
!!! AACATCAAAGGTAGTTTTGG+TGG + chr6_4:83445559-83445578 Msa1000530:intron 35.0%
AAACCACACAATCGAATGTT+TGG - chr6_4:83445601-83445620 None:intergenic 35.0%
TAGAGTAAATGACATCTAGG+TGG + chr6_4:83446136-83446155 Msa1000530:three_prime_UTR 35.0%
AATGTCCACATCCATTGAAA+AGG + chr6_4:83446226-83446245 Msa1000530:three_prime_UTR 35.0%
! TTTCTCCTTTTCAATGGATG+TGG - chr6_4:83446234-83446253 None:intergenic 35.0%
GGATCATATGTATGAAGAAG+GGG - chr6_4:83446340-83446359 None:intergenic 35.0%
GAGGATCATATGTATGAAGA+AGG - chr6_4:83446342-83446361 None:intergenic 35.0%
! ATTCTTATTTCGGTCCTCAA+GGG - chr6_4:83446367-83446386 None:intergenic 35.0%
! AATTCTTATTTCGGTCCTCA+AGG - chr6_4:83446368-83446387 None:intergenic 35.0%
!!! ATTTTAGTTTCCCGTCAATG+CGG + chr6_4:83446450-83446469 Msa1000530:three_prime_UTR 35.0%
! AAATAGTACCGAATGGCGAA+TGG - chr6_4:83440227-83440246 None:intergenic 40.0%
ACCACATACATAAATCGGAC+CGG + chr6_4:83440376-83440395 Msa1000530:intron 40.0%
AAATGAATTCAACACGCGGA+CGG - chr6_4:83440478-83440497 None:intergenic 40.0%
CGAGTGATATCTCAGATTCA+TGG + chr6_4:83440578-83440597 Msa1000530:intron 40.0%
! TTCAAGTTAGGACGCAAGAT+CGG + chr6_4:83440621-83440640 Msa1000530:CDS 40.0%
TCCTTCGGTGAAATCTATCT+CGG + chr6_4:83440651-83440670 Msa1000530:CDS 40.0%
TATTGATACCTTCGAGATCG+TGG + chr6_4:83440781-83440800 Msa1000530:CDS 40.0%
CTTGAGGTTCACTGTAATTC+TGG - chr6_4:83440927-83440946 None:intergenic 40.0%
ACCTCAAGATACTGTGATTC+TGG + chr6_4:83440939-83440958 Msa1000530:intron 40.0%
ACCAGAATCACAGTATCTTG+AGG - chr6_4:83440943-83440962 None:intergenic 40.0%
CTGTGATTCTGGTATATCCA+TGG + chr6_4:83440950-83440969 Msa1000530:intron 40.0%
AAGCATGTTTGGTATCACCA+TGG - chr6_4:83440970-83440989 None:intergenic 40.0%
ACCATGAGATACTGTGATTC+TGG + chr6_4:83441077-83441096 Msa1000530:intron 40.0%
AAGTATGTTTGGTATCCCAG+TGG - chr6_4:83441108-83441127 None:intergenic 40.0%
!! TGCATGTTTGGTGTCAGAAA+TGG + chr6_4:83441358-83441377 Msa1000530:intron 40.0%
! TTGATTTTCGGTTGTGTTGC+AGG + chr6_4:83441490-83441509 Msa1000530:intron 40.0%
! ACTCAGGTGTTGTCAAGTAT+CGG + chr6_4:83441840-83441859 Msa1000530:intron 40.0%
!! TTGTCAAGTATCGGCTATAG+TGG + chr6_4:83441849-83441868 Msa1000530:intron 40.0%
CAATGTTGTCAATCGCAGAT+TGG - chr6_4:83441985-83442004 None:intergenic 40.0%
ATAAGATGGAGTGGTGTAGA+CGG + chr6_4:83442131-83442150 Msa1000530:CDS 40.0%
! GGAAGACAATGTGCTTGTTA+TGG + chr6_4:83442154-83442173 Msa1000530:CDS 40.0%
! CCAACATCAAGACAGTTTTG+AGG - chr6_4:83442235-83442254 None:intergenic 40.0%
CCTCAAAACTGTCTTGATGT+TGG + chr6_4:83442232-83442251 Msa1000530:CDS 40.0%
! CTTGATGTTGGCTGATCAAA+TGG + chr6_4:83442244-83442263 Msa1000530:CDS 40.0%
AAGCCAGAACTAAAAGGGAT+GGG - chr6_4:83442275-83442294 None:intergenic 40.0%
AAAGCCAGAACTAAAAGGGA+TGG - chr6_4:83442276-83442295 None:intergenic 40.0%
CTACGAAAGCCAGAACTAAA+AGG - chr6_4:83442281-83442300 None:intergenic 40.0%
CATGTGATTATGATGCCAAG+CGG + chr6_4:83442358-83442377 Msa1000530:intron 40.0%
ATGTGATTATGATGCCAAGC+GGG + chr6_4:83442359-83442378 Msa1000530:intron 40.0%
! CGGGAAGTGTGCATTTATAA+AGG + chr6_4:83442378-83442397 Msa1000530:intron 40.0%
! ATTCTAAAGGGTTCCTCCAT+AGG + chr6_4:83442457-83442476 Msa1000530:CDS 40.0%
! TTCTAAAGGGTTCCTCCATA+GGG + chr6_4:83442458-83442477 Msa1000530:CDS 40.0%
CCTCCATAGGGATATAAAAC+CGG + chr6_4:83442470-83442489 Msa1000530:CDS 40.0%
AGTCCCATGAGAAAGTTATC+CGG - chr6_4:83442492-83442511 None:intergenic 40.0%
GATAACTTTCTCATGGGACT+TGG + chr6_4:83442492-83442511 Msa1000530:CDS 40.0%
AGCTCAAGGAATGACAGAAT+CGG - chr6_4:83442581-83442600 None:intergenic 40.0%
TTGGGCTTGCAAAACGATAT+CGG + chr6_4:83442671-83442690 Msa1000530:CDS 40.0%
TTCAAAACCTGTATGGGATG+TGG - chr6_4:83442714-83442733 None:intergenic 40.0%
GGGAGAACAAAAACTTAACC+GGG + chr6_4:83442915-83442934 Msa1000530:intron 40.0%
CAAGCTGCAATACTCATCTT+GGG + chr6_4:83442951-83442970 Msa1000530:CDS 40.0%
TGCAATACTCATCTTGGGAT+TGG + chr6_4:83442956-83442975 Msa1000530:CDS 40.0%
TATTTGTAGAACAAAGCCGC+CGG + chr6_4:83443054-83443073 Msa1000530:intron 40.0%
! TTTTGTACTTCCTCAGAGGA+AGG + chr6_4:83443105-83443124 Msa1000530:CDS 40.0%
! TAATTGTGTTTAGCCTTCCC+TGG + chr6_4:83443227-83443246 Msa1000530:intron 40.0%
AAGTACGAAGCAAACTCTAC+AGG - chr6_4:83443428-83443447 None:intergenic 40.0%
AGGTCAAAGAATGGCAGTAA+TGG - chr6_4:83443451-83443470 None:intergenic 40.0%
GCTGATCAAAGGTCAAAGAA+TGG - chr6_4:83443460-83443479 None:intergenic 40.0%
ATAATCAGGTCGCTGATCAA+AGG - chr6_4:83443471-83443490 None:intergenic 40.0%
TTTGATCAGCGACCTGATTA+TGG + chr6_4:83443470-83443489 Msa1000530:CDS 40.0%
GACCTGATTATGGATTCTTG+AGG + chr6_4:83443480-83443499 Msa1000530:CDS 40.0%
GAGCAAATAACTCCCGAAAT+AGG - chr6_4:83443508-83443527 None:intergenic 40.0%
!! GAATGTTGGTTCAGTTGGTA+TGG + chr6_4:83443635-83443654 Msa1000530:intron 40.0%
TGATTTGAGGACTCTGATAG+TGG + chr6_4:83443707-83443726 Msa1000530:intron 40.0%
GATTTGAGGACTCTGATAGT+GGG + chr6_4:83443708-83443727 Msa1000530:intron 40.0%
ATGTGTTATGGAAAGCCTCA+AGG - chr6_4:83443768-83443787 None:intergenic 40.0%
CATAACACATATTGAGCCTG+CGG + chr6_4:83443778-83443797 Msa1000530:intron 40.0%
ATAACACATATTGAGCCTGC+GGG + chr6_4:83443779-83443798 Msa1000530:intron 40.0%
TGAGTGGGGATGTTACATTT+CGG - chr6_4:83443978-83443997 None:intergenic 40.0%
TTTATGTGTGTGTGTGTGTG+TGG + chr6_4:83444107-83444126 Msa1000530:intron 40.0%
TACCGCCTGATGATTTAAAC+TGG - chr6_4:83444390-83444409 None:intergenic 40.0%
! TTGGCTTCTGAGAATCATCT+TGG + chr6_4:83444415-83444434 Msa1000530:CDS 40.0%
ATTCCTTGCTACTGAATCTG+CGG + chr6_4:83444477-83444496 Msa1000530:intron 40.0%
! CGAAAGAGTGTGAAGTAGAA+GGG - chr6_4:83444627-83444646 None:intergenic 40.0%
! TCGAAAGAGTGTGAAGTAGA+AGG - chr6_4:83444628-83444647 None:intergenic 40.0%
! ACTCTTTCGAAGCATCAAGA+AGG + chr6_4:83444638-83444657 Msa1000530:CDS 40.0%
ACATTCATCCGACTACTTGA+AGG - chr6_4:83444736-83444755 None:intergenic 40.0%
CAGTGGTCAATGATATGAGT+GGG - chr6_4:83444854-83444873 None:intergenic 40.0%
TCCATGTTTGTATGCATGCA+GGG - chr6_4:83444923-83444942 None:intergenic 40.0%
ACATGGAGCTGCATATTATG+GGG + chr6_4:83444936-83444955 Msa1000530:three_prime_UTR 40.0%
TAGCACATTAGTAGTCTCCA+CGG - chr6_4:83444983-83445002 None:intergenic 40.0%
GAGACTACTAATGTGCTACA+AGG + chr6_4:83444985-83445004 Msa1000530:three_prime_UTR 40.0%
GGGAAATGAGCAACATAAAC+TGG - chr6_4:83445041-83445060 None:intergenic 40.0%
ATCATTTGCAGTCACCTTAG+GGG - chr6_4:83445063-83445082 None:intergenic 40.0%
CAATCATTTGCAGTCACCTT+AGG - chr6_4:83445065-83445084 None:intergenic 40.0%
GGTGACTGCAAATGATTGTT+TGG + chr6_4:83445067-83445086 Msa1000530:intron 40.0%
ACAAATCACAAGTGGCAAGA+GGG - chr6_4:83445215-83445234 None:intergenic 40.0%
TATACGGCACAAATCACAAG+TGG - chr6_4:83445223-83445242 None:intergenic 40.0%
AAGTGCACTGTATCTTATGC+AGG - chr6_4:83445392-83445411 None:intergenic 40.0%
ACAAGCTGCTTACCATTTCA+TGG - chr6_4:83445450-83445469 None:intergenic 40.0%
TGAAATGGTAAGCAGCTTGT+CGG + chr6_4:83445450-83445469 Msa1000530:intron 40.0%
CAAGATGACTCCCGAAATAA+TGG + chr6_4:83445526-83445545 Msa1000530:three_prime_UTR 40.0%
CTTCCAAACATTCGATTGTG+TGG + chr6_4:83445595-83445614 Msa1000530:intron 40.0%
! TGTGGTTTAACGTTAGTCTG+AGG + chr6_4:83445613-83445632 Msa1000530:intron 40.0%
ATTTCAATGTGACCAAGGTG+TGG + chr6_4:83445893-83445912 Msa1000530:intron 40.0%
! ATGGTGGAGATCATGAAAGA+TGG + chr6_4:83446280-83446299 Msa1000530:three_prime_UTR 40.0%
! CTAGTATTATCCGCATTGAC+GGG - chr6_4:83446463-83446482 None:intergenic 40.0%
CCTAGTATTATCCGCATTGA+CGG - chr6_4:83446464-83446483 None:intergenic 40.0%
GCACTTCTGTAAGAGGTTGT+AGG - chr6_4:83439741-83439760 None:intergenic 45.0%
ACTCGAACATAGGGTAAGAG+CGG - chr6_4:83439834-83439853 None:intergenic 45.0%
TGAGTACTCCATTCGCCATT+CGG + chr6_4:83440216-83440235 Msa1000530:intron 45.0%
TCCGGTCCGATTTATGTATG+TGG - chr6_4:83440380-83440399 None:intergenic 45.0%
ACATACATAAATCGGACCGG+AGG + chr6_4:83440379-83440398 Msa1000530:intron 45.0%
CATACATAAATCGGACCGGA+GGG + chr6_4:83440380-83440399 Msa1000530:intron 45.0%
TTACTTATACTCCCTCCCTC+CGG - chr6_4:83440398-83440417 None:intergenic 45.0%
! GAGGGAGGGAGTATAAGTAA+GGG + chr6_4:83440398-83440417 Msa1000530:intron 45.0%
! AGGGAGGGAGTATAAGTAAG+GGG + chr6_4:83440399-83440418 Msa1000530:intron 45.0%
! TTCGTAGTTTTCCATTGCGG+TGG + chr6_4:83440500-83440519 Msa1000530:intron 45.0%
AAGATCGGAAGTGGATCCTT+CGG + chr6_4:83440636-83440655 Msa1000530:CDS 45.0%
ACCGAGATAGATTTCACCGA+AGG - chr6_4:83440655-83440674 None:intergenic 45.0%
CTCATGGTTCACTGTGATTC+TGG - chr6_4:83441065-83441084 None:intergenic 45.0%
GCCAGAATCACAGTATCTCA+TGG - chr6_4:83441081-83441100 None:intergenic 45.0%
TGTGATTCTGGCATATCCAC+TGG + chr6_4:83441089-83441108 Msa1000530:intron 45.0%
GTGATTCTGGCATATCCACT+GGG + chr6_4:83441090-83441109 Msa1000530:intron 45.0%
TTGTTACCGCAGTGCATGTT+TGG + chr6_4:83441346-83441365 Msa1000530:intron 45.0%
CTATAGTGGTGATATAGCGC+TGG + chr6_4:83441863-83441882 Msa1000530:intron 45.0%
GTGGTATCCCAAGCATAAGA+TGG + chr6_4:83442117-83442136 Msa1000530:CDS 45.0%
ATCCCAAGCATAAGATGGAG+TGG + chr6_4:83442122-83442141 Msa1000530:CDS 45.0%
CACCACTCCATCTTATGCTT+GGG - chr6_4:83442127-83442146 None:intergenic 45.0%
ACACCACTCCATCTTATGCT+TGG - chr6_4:83442128-83442147 None:intergenic 45.0%
TAAGATGGAGTGGTGTAGAC+GGG + chr6_4:83442132-83442151 Msa1000530:CDS 45.0%
!!! ATCCCCATCCCTTTTAGTTC+TGG + chr6_4:83442269-83442288 Msa1000530:intron 45.0%
AGCCAGAACTAAAAGGGATG+GGG - chr6_4:83442274-83442293 None:intergenic 45.0%
ATAAATGCACACTTCCCGCT+TGG - chr6_4:83442376-83442395 None:intergenic 45.0%
!! CCGGTTTTATATCCCTATGG+AGG - chr6_4:83442473-83442492 None:intergenic 45.0%
! ACTTTCTCATGGGACTTGGT+CGG + chr6_4:83442496-83442515 Msa1000530:CDS 45.0%
GATTCTGTCATTCCTTGAGC+TGG + chr6_4:83442580-83442599 Msa1000530:intron 45.0%
TCGATGAAACAACCAGCTCA+AGG - chr6_4:83442595-83442614 None:intergenic 45.0%
GTGCTTGTGTTGTACATGTC+AGG + chr6_4:83442633-83442652 Msa1000530:intron 45.0%
TGGGCTTGCAAAACGATATC+GGG + chr6_4:83442672-83442691 Msa1000530:CDS 45.0%
GATGAGAAGAGCAGAGGTAA+AGG - chr6_4:83442850-83442869 None:intergenic 45.0%
GCAAGCTGCAATACTCATCT+TGG + chr6_4:83442950-83442969 Msa1000530:CDS 45.0%
ATTTGTAGAACAAAGCCGCC+GGG + chr6_4:83443055-83443074 Msa1000530:intron 45.0%
CAAGAGACTCCAAATCATCC+CGG - chr6_4:83443076-83443095 None:intergenic 45.0%
! GTGCTTTTGTACTTCCTCAG+AGG + chr6_4:83443101-83443120 Msa1000530:CDS 45.0%
TACTTCCTCAGAGGAAGGTA+TGG + chr6_4:83443110-83443129 Msa1000530:intron 45.0%
CGAAGCAAACTCTACAGGAT+GGG - chr6_4:83443423-83443442 None:intergenic 45.0%
ACGAAGCAAACTCTACAGGA+TGG - chr6_4:83443424-83443443 None:intergenic 45.0%
CGCCTCAAGAATCCATAATC+AGG - chr6_4:83443485-83443504 None:intergenic 45.0%
! GATTCTTGAGGCGCCTATTT+CGG + chr6_4:83443492-83443511 Msa1000530:CDS 45.0%
! ATTCTTGAGGCGCCTATTTC+GGG + chr6_4:83443493-83443512 Msa1000530:CDS 45.0%
! CATTCGTTGGCTGGTGATTT+AGG - chr6_4:83443620-83443639 None:intergenic 45.0%
AATCACCAGCCAACGAATGT+TGG + chr6_4:83443621-83443640 Msa1000530:intron 45.0%
CCAACTGAACCAACATTCGT+TGG - chr6_4:83443633-83443652 None:intergenic 45.0%
!! CCAACGAATGTTGGTTCAGT+TGG + chr6_4:83443630-83443649 Msa1000530:intron 45.0%
GAACCCACATCTTTGTGGAA+TGG - chr6_4:83443675-83443694 None:intergenic 45.0%
CATTCGAACCCACATCTTTG+TGG - chr6_4:83443680-83443699 None:intergenic 45.0%
GGCTCAATAAGCGCTTATAG+AGG - chr6_4:83443747-83443766 None:intergenic 45.0%
TAAGCGCTTATTGAGCCTTG+AGG + chr6_4:83443750-83443769 Msa1000530:intron 45.0%
CGCAGGCTCAATATGTGTTA+TGG - chr6_4:83443780-83443799 None:intergenic 45.0%
GTAACATCCCCACTCATTTC+TGG + chr6_4:83443982-83444001 Msa1000530:intron 45.0%
! CTCTACTCTTTTGTGACTGC+TGG - chr6_4:83444061-83444080 None:intergenic 45.0%
ACTTACGGATATGTGAGGCT+GGG - chr6_4:83444084-83444103 None:intergenic 45.0%
TACTTACGGATATGTGAGGC+TGG - chr6_4:83444085-83444104 None:intergenic 45.0%
TTCCTGTAGCGAGCAACAAT+CGG + chr6_4:83444188-83444207 Msa1000530:CDS 45.0%
TTATACAGGGGATGTCTCAG+CGG + chr6_4:83444321-83444340 Msa1000530:intron 45.0%
GAACTTAACACCGGAAGAAG+CGG - chr6_4:83444368-83444387 None:intergenic 45.0%
AAGCTGCAAACCATAGGCAT+GGG + chr6_4:83444689-83444708 Msa1000530:CDS 45.0%
GCAGTGGTCAATGATATGAG+TGG - chr6_4:83444855-83444874 None:intergenic 45.0%
ACATAGCACAGTATACGCAG+TGG - chr6_4:83444871-83444890 None:intergenic 45.0%
TCCCTGCATGCATACAAACA+TGG + chr6_4:83444919-83444938 Msa1000530:three_prime_UTR 45.0%
CTCCATGTTTGTATGCATGC+AGG - chr6_4:83444924-83444943 None:intergenic 45.0%
AGCACATTAGTAGTCTCCAC+GGG - chr6_4:83444982-83445001 None:intergenic 45.0%
TCATTTGCAGTCACCTTAGG+GGG - chr6_4:83445062-83445081 None:intergenic 45.0%
AAATACAGACTGCACAGGCT+TGG + chr6_4:83445094-83445113 Msa1000530:intron 45.0%
CAAATCACAAGTGGCAAGAG+GGG - chr6_4:83445214-83445233 None:intergenic 45.0%
CACAAATCACAAGTGGCAAG+AGG - chr6_4:83445216-83445235 None:intergenic 45.0%
ATATCTCTTCATACGGGCGA+TGG + chr6_4:83446175-83446194 Msa1000530:three_prime_UTR 45.0%
CATATGATCCTCAACCCTTG+AGG + chr6_4:83446350-83446369 Msa1000530:three_prime_UTR 45.0%
CCGTCAATGCGGATAATACT+AGG + chr6_4:83446461-83446480 Msa1000530:three_prime_UTR 45.0%
TGCGGATAATACTAGGTCAC+CGG + chr6_4:83446468-83446487 Msa1000530:three_prime_UTR 45.0%
ACAAGAACTAGCACAAGACC+CGG - chr6_4:83446490-83446509 None:intergenic 45.0%
!! AAATTATTTATTTATGTTAT+TGG + chr6_4:83441151-83441170 Msa1000530:intron 5.0%
TGGGATGCTCTCAAGATTGC+TGG + chr6_4:83439769-83439788 Msa1000530:CDS 50.0%
GCTCTTACCCTATGTTCGAG+TGG + chr6_4:83439833-83439852 Msa1000530:intron 50.0%
! GGAGGGAGGGAGTATAAGTA+AGG + chr6_4:83440397-83440416 Msa1000530:intron 50.0%
! GGGAGGGAGTATAAGTAAGG+GGG + chr6_4:83440400-83440419 Msa1000530:intron 50.0%
TTAGGACGCAAGATCGGAAG+TGG + chr6_4:83440627-83440646 Msa1000530:CDS 50.0%
CTGACACCAAACATGCACTG+CGG - chr6_4:83441355-83441374 None:intergenic 50.0%
AAGATGGAGTGGTGTAGACG+GGG + chr6_4:83442133-83442152 Msa1000530:CDS 50.0%
!! TTTGTTGGGGCCTAGTCTTG+AGG + chr6_4:83442178-83442197 Msa1000530:CDS 50.0%
CTAAGGGATGAGAAGAGCAG+AGG - chr6_4:83442856-83442875 None:intergenic 50.0%
! CGGGATGATTTGGAGTCTCT+TGG + chr6_4:83443074-83443093 Msa1000530:CDS 50.0%
GAATGCCATACCTTCCTCTG+AGG - chr6_4:83443118-83443137 None:intergenic 50.0%
!! CCTTTAGGTTTTGCCAGGGA+AGG - chr6_4:83443243-83443262 None:intergenic 50.0%
CCTTCCCTGGCAAAACCTAA+AGG + chr6_4:83443240-83443259 Msa1000530:CDS 50.0%
!! GCAGCCTTTAGGTTTTGCCA+GGG - chr6_4:83443247-83443266 None:intergenic 50.0%
GCTTCTTTGTCGCAGCCTTT+AGG - chr6_4:83443258-83443277 None:intergenic 50.0%
GGGCAGATGCTTACCTCAAT+AGG - chr6_4:83443319-83443338 None:intergenic 50.0%
CGGGAGTTATTTGCTCGAGA+AGG + chr6_4:83443512-83443531 Msa1000530:CDS 50.0%
CTGAACCAACATTCGTTGGC+TGG - chr6_4:83443629-83443648 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGGAT+TGG + chr6_4:83444112-83444131 Msa1000530:intron 50.0%
TTGTTGCTCGCTACAGGAAC+CGG - chr6_4:83444187-83444206 None:intergenic 50.0%
TCCTGTAGCGAGCAACAATC+GGG + chr6_4:83444189-83444208 Msa1000530:CDS 50.0%
GGTTCAAGCACCAACCTTGT+TGG - chr6_4:83444237-83444256 None:intergenic 50.0%
! TCAGACAATGCCGCTTCTTC+CGG + chr6_4:83444355-83444374 Msa1000530:CDS 50.0%
GTTCCGCAGATTCAGTAGCA+AGG - chr6_4:83444483-83444502 None:intergenic 50.0%
! CCTATGGTTTGCAGCTTCAG+TGG - chr6_4:83444686-83444705 None:intergenic 50.0%
CCACTGAAGCTGCAAACCAT+AGG + chr6_4:83444683-83444702 Msa1000530:CDS 50.0%
GAAGCTGCAAACCATAGGCA+TGG + chr6_4:83444688-83444707 Msa1000530:CDS 50.0%
CAAACCATAGGCATGGGCAA+GGG + chr6_4:83444695-83444714 Msa1000530:CDS 50.0%
GGGCAAGGGAGCAGTAAAAT+TGG + chr6_4:83444709-83444728 Msa1000530:CDS 50.0%
TACTCAATGCAGCACACGTG+CGG - chr6_4:83444814-83444833 None:intergenic 50.0%
TGTTGCTCATTTCCCCCCTA+AGG + chr6_4:83445046-83445065 Msa1000530:intron 50.0%
CATTTGCAGTCACCTTAGGG+GGG - chr6_4:83445061-83445080 None:intergenic 50.0%
ATTGCAGCTTGTCCACACCT+TGG - chr6_4:83445908-83445927 None:intergenic 50.0%
ATGGATCCTCTCGTGTCATG+AGG + chr6_4:83446194-83446213 Msa1000530:three_prime_UTR 50.0%
TGGATCCTCTCGTGTCATGA+GGG + chr6_4:83446195-83446214 Msa1000530:three_prime_UTR 50.0%
ATAGACCCTCATGACACGAG+AGG - chr6_4:83446203-83446222 None:intergenic 50.0%
ATTTCGGTCCTCAAGGGTTG+AGG - chr6_4:83446361-83446380 None:intergenic 50.0%
GCGGATAATACTAGGTCACC+GGG + chr6_4:83446469-83446488 Msa1000530:three_prime_UTR 50.0%
ACATAAATCGGACCGGAGGG+AGG + chr6_4:83440383-83440402 Msa1000530:intron 55.0%
CATAAATCGGACCGGAGGGA+GGG + chr6_4:83440384-83440403 Msa1000530:intron 55.0%
GAATTCAACACGCGGACGGA+TGG - chr6_4:83440474-83440493 None:intergenic 55.0%
GAAGAGAGTAGCCACCGCAA+TGG - chr6_4:83440514-83440533 None:intergenic 55.0%
CTTGACAGCCACGATCTCGA+AGG - chr6_4:83440792-83440811 None:intergenic 55.0%
TCGGTTGTGTTGCAGGAGAC+TGG + chr6_4:83441497-83441516 Msa1000530:intron 55.0%
! TCTCATGGGACTTGGTCGGA+AGG + chr6_4:83442500-83442519 Msa1000530:CDS 55.0%
ACTTGGTCGGAAGGCAAACC+TGG + chr6_4:83442509-83442528 Msa1000530:CDS 55.0%
! TGGGATGTGGCGATTGGTTG+TGG - chr6_4:83442701-83442720 None:intergenic 55.0%
CCTGTATGGGATGTGGCGAT+TGG - chr6_4:83442707-83442726 None:intergenic 55.0%
CCAATCGCCACATCCCATAC+AGG + chr6_4:83442704-83442723 Msa1000530:CDS 55.0%
ACAAAGCCGCCGGGATGATT+TGG + chr6_4:83443064-83443083 Msa1000530:CDS 55.0%
GAGACTCCAAATCATCCCGG+CGG - chr6_4:83443073-83443092 None:intergenic 55.0%
!! CGCAGCCTTTAGGTTTTGCC+AGG - chr6_4:83443248-83443267 None:intergenic 55.0%
!! TTAGGTGGATTGAGTCCCGC+AGG - chr6_4:83443797-83443816 None:intergenic 55.0%
CAACAATCGGGCAATGCCCA+TGG + chr6_4:83444201-83444220 Msa1000530:CDS 55.0%
GTTTGCAGCTTCAGTGGACG+CGG - chr6_4:83444680-83444699 None:intergenic 55.0%
GCAAACCATAGGCATGGGCA+AGG + chr6_4:83444694-83444713 Msa1000530:CDS 55.0%
CAAGTGGCAAGAGGGGCAAA+TGG - chr6_4:83445207-83445226 None:intergenic 55.0%
TCAACACGCGGACGGATGGA+CGG - chr6_4:83440470-83440489 None:intergenic 60.0%
GCTTGCATAACGCGCAGTCC+CGG - chr6_4:83442936-83442955 None:intergenic 60.0%
GCCCGATTGTTGCTCGCTAC+AGG - chr6_4:83444193-83444212 None:intergenic 60.0%
AGTGGACGCGGAAGGCTTCA+AGG - chr6_4:83444668-83444687 None:intergenic 60.0%
TGCTCCCTTGCCCATGCCTA+TGG - chr6_4:83444702-83444721 None:intergenic 60.0%
GCTTGCAAGTGATCTGCCCG+TGG + chr6_4:83444963-83444982 Msa1000530:three_prime_UTR 60.0%
GCAGCTTCAGTGGACGCGGA+AGG - chr6_4:83444676-83444695 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 83439706 83446529 83439706 ID=Msa1000530;Name=Msa1000530
chr6_4 mRNA 83439706 83446529 83439706 ID=Msa1000530-mRNA-1;Parent=Msa1000530;Name=Msa1000530-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.88|0.83|0.94|0.58|0.61|18|818|433
chr6_4 exon 83439706 83439794 83439706 ID=Msa1000530-mRNA-1:exon:16160;Parent=Msa1000530-mRNA-1
chr6_4 exon 83440593 83440672 83440593 ID=Msa1000530-mRNA-1:exon:16161;Parent=Msa1000530-mRNA-1
chr6_4 exon 83440774 83440818 83440774 ID=Msa1000530-mRNA-1:exon:16162;Parent=Msa1000530-mRNA-1
chr6_4 exon 83442117 83442265 83442117 ID=Msa1000530-mRNA-1:exon:16163;Parent=Msa1000530-mRNA-1
chr6_4 exon 83442435 83442530 83442435 ID=Msa1000530-mRNA-1:exon:16164;Parent=Msa1000530-mRNA-1
chr6_4 exon 83442655 83442725 83442655 ID=Msa1000530-mRNA-1:exon:16165;Parent=Msa1000530-mRNA-1
chr6_4 exon 83442916 83442977 83442916 ID=Msa1000530-mRNA-1:exon:16166;Parent=Msa1000530-mRNA-1
chr6_4 exon 83443063 83443126 83443063 ID=Msa1000530-mRNA-1:exon:16167;Parent=Msa1000530-mRNA-1
chr6_4 exon 83443240 83443324 83443240 ID=Msa1000530-mRNA-1:exon:16168;Parent=Msa1000530-mRNA-1
chr6_4 exon 83443407 83443533 83443407 ID=Msa1000530-mRNA-1:exon:16169;Parent=Msa1000530-mRNA-1
chr6_4 exon 83444015 83444097 83444015 ID=Msa1000530-mRNA-1:exon:16170;Parent=Msa1000530-mRNA-1
chr6_4 exon 83444184 83444241 83444184 ID=Msa1000530-mRNA-1:exon:16171;Parent=Msa1000530-mRNA-1
chr6_4 exon 83444329 83444444 83444329 ID=Msa1000530-mRNA-1:exon:16172;Parent=Msa1000530-mRNA-1
chr6_4 exon 83444604 83444792 83444604 ID=Msa1000530-mRNA-1:exon:16173;Parent=Msa1000530-mRNA-1
chr6_4 exon 83444897 83445006 83444897 ID=Msa1000530-mRNA-1:exon:16174;Parent=Msa1000530-mRNA-1
chr6_4 exon 83445488 83445568 83445488 ID=Msa1000530-mRNA-1:exon:16175;Parent=Msa1000530-mRNA-1
chr6_4 exon 83445822 83445909 83445822 ID=Msa1000530-mRNA-1:exon:16176;Parent=Msa1000530-mRNA-1
chr6_4 exon 83446003 83446529 83446003 ID=Msa1000530-mRNA-1:exon:16177;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83439706 83439794 83439706 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83440593 83440672 83440593 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83440774 83440818 83440774 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83442117 83442265 83442117 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83442435 83442530 83442435 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83442655 83442725 83442655 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83442916 83442977 83442916 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83443063 83443126 83443063 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83443240 83443324 83443240 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83443407 83443533 83443407 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83444015 83444097 83444015 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83444184 83444241 83444184 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83444329 83444444 83444329 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 CDS 83444604 83444780 83444604 ID=Msa1000530-mRNA-1:cds;Parent=Msa1000530-mRNA-1
chr6_4 three_prime_UTR 83444781 83444792 83444781 ID=Msa1000530-mRNA-1:three_prime_utr;Parent=Msa1000530-mRNA-1
chr6_4 three_prime_UTR 83444897 83445006 83444897 ID=Msa1000530-mRNA-1:three_prime_utr;Parent=Msa1000530-mRNA-1
chr6_4 three_prime_UTR 83445488 83445568 83445488 ID=Msa1000530-mRNA-1:three_prime_utr;Parent=Msa1000530-mRNA-1
chr6_4 three_prime_UTR 83445822 83445909 83445822 ID=Msa1000530-mRNA-1:three_prime_utr;Parent=Msa1000530-mRNA-1
chr6_4 three_prime_UTR 83446003 83446529 83446003 ID=Msa1000530-mRNA-1:three_prime_utr;Parent=Msa1000530-mRNA-1
Gene Sequence

>Msa1000530

ATGGAAGGGAAACTATCTCAAGACACTATTCGCCTACAACCTCTTACAGAAGTGCAAATCATGTGGGATGCTCTCAAGATTGCTGGTATATTCATGGATCGAATCATCGGTGATAAATTCAAGTTAGGACGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACTCATATTGATACCTTCGAGATCGTGGCTGTCAAGATCGTATGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAATTCTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGGTTCCTCCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTATATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCATACAGGGAGAACAAAAACTTAACCGGGACTGCGCGTTATGCAAGCTGCAATACTCATCTTGGGATTGAACAAAGCCGCCGGGATGATTTGGAGTCTCTTGGATACGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCCTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCCCATCCTGTAGAGTTTGCTTCGTACTTCCATTACTGCCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGGGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCCCAGCCTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGGGATGTCTCAGCGGAGCAGATTAGATCAGACAATGCCGCTTCTTCCGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCATCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTCGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCGCGTCCACTGAAGCTGCAAACCATAGGCATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTGCACATAAGTTCTGCTAAATAA
Protein sequence

>Msa1000530

MEGKLSQDTIRLQPLTEVQIMWDALKIAGIFMDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIVCGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPVPVASNNRAMPMDIDNQQGDVSAEQIRSDNAASSGVKFQFKSSGGKNLASENHLGKNIFGEATIPSTSHSFEASRRNSLKPSASTEAANHRHGQGSSKIGPSSSRMNVLHISSAK*