AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0900440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900440 MtrunA17_Chr6g0486531 82.710 214 20 3 51 250 844 1054 5.03e-110 340
Msa0900440 MtrunA17_Chr6g0486531 56.574 251 47 3 10 246 607 809 2.87e-79 257
Msa0900440 MtrunA17_Chr2g0299581 67.647 170 24 5 96 250 37 190 7.57e-62 192
Msa0900440 MtrunA17_Chr6g0484381 65.269 167 14 3 90 242 36 172 1.66e-59 186
Msa0900440 MtrunA17_Chr6g0486321 66.875 160 34 3 65 223 46 187 1.19e-57 182
Msa0900440 MtrunA17_Chr6g0486241 58.192 177 32 4 57 233 42 176 7.51e-50 162
Msa0900440 MtrunA17_Chr6g0486461 81.720 93 17 0 146 238 11 103 2.82e-46 149
Msa0900440 MtrunA17_Chr6g0486491 65.138 109 9 4 76 170 1 94 8.04e-33 115
Msa0900440 MtrunA17_Chr6g0460441 42.500 200 51 6 1 195 1 141 1.50e-29 108
Msa0900440 MtrunA17_Chr6g0486281 89.362 47 5 0 141 187 1 47 7.98e-22 85.5
Msa0900440 MtrunA17_Chr6g0486211 70.000 70 20 1 57 126 17 85 9.95e-22 86.3
Msa0900440 MtrunA17_Chr2g0299591 61.017 59 21 1 42 100 6 62 3.77e-15 68.2
Msa0900440 MtrunA17_Chr2g0299591 58.696 46 19 0 11 56 20 65 2.37e-12 60.8
Msa0900440 MtrunA17_Chr6g0477831 45.679 81 39 1 93 168 10 90 2.45e-14 67.0
Msa0900440 MtrunA17_Chr6g0486301 47.826 69 26 1 119 187 1046 1104 5.02e-13 68.6
Msa0900440 MtrunA17_Chr6g0448841 29.670 182 78 5 64 232 32 176 1.02e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900440 AT4G29060.1 76.440 191 30 2 64 240 762 951 2.45e-88 281
Msa0900440 AT4G29060.1 66.169 201 53 2 60 246 520 719 1.71e-79 257
Msa0900440 AT4G29060.2 70.256 195 37 3 60 240 520 707 3.09e-81 258

Find 45 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTTCATCCTTAATAAA+AGG 0.204824 6_1:-95939193 None:intergenic
TTCTTTCGTCACAGTAGTTT+CGG 0.227928 6_1:-95939056 None:intergenic
TCCTTCAGCTGCTAGTCTTC+CGG 0.358058 6_1:-95938865 None:intergenic
CGCACAAACTTCAGCAAAAC+CGG 0.399462 6_1:+95937491 Msa0900440:CDS
TCTTTCGTCACAGTAGTTTC+GGG 0.408181 6_1:-95939055 None:intergenic
AAGCAACTTCGGGACGAAAC+AGG 0.415386 6_1:+95937361 Msa0900440:CDS
TGTTCTCGGGTTTCGAATCA+AGG 0.417895 6_1:-95939105 None:intergenic
AGGCAAAGTATAGCTACTAT+TGG 0.441103 6_1:+95939235 Msa0900440:CDS
GAAAACCTTGTAAGCTATGC+TGG 0.445394 6_1:-95939328 None:intergenic
GGAAGAATCTCAAAGAGGTT+AGG 0.459157 6_1:+95939148 Msa0900440:CDS
CTTCGGGACGAAACAGGATC+TGG 0.465180 6_1:+95937367 Msa0900440:CDS
CGAAGTTGCTTCACAAGTGC+TGG 0.465644 6_1:-95937349 None:intergenic
AACTGAGAAATTCAAGGAGT+TGG 0.466646 6_1:+95938967 Msa0900440:CDS
CAGCACTTGTGAAGCAACTT+CGG 0.472018 6_1:+95937350 Msa0900440:CDS
AGAAACCGGTGCAGGGATGA+TGG 0.478121 6_1:+95938746 Msa0900440:CDS
AACTGAAGGCGATCTTGAAA+AGG 0.489152 6_1:+95938791 Msa0900440:CDS
TCAAAGCACACAAGCTCCTA+AGG 0.501433 6_1:+95937437 Msa0900440:CDS
CTCAGTTCTGCCAACAAAGT+CGG 0.502415 6_1:-95938951 None:intergenic
CGAAACAGGATCTGGAATGA+TGG 0.511701 6_1:+95937375 Msa0900440:CDS
TTAAGGGAAGAAACCGGTGC+AGG 0.512063 6_1:+95938738 Msa0900440:intron
TGGCAGAACTGAGAAATTCA+AGG 0.527151 6_1:+95938961 Msa0900440:CDS
GATATAGTTGCTGCAATCCA+AGG 0.530496 6_1:-95937325 None:intergenic
AGCACTTGTGAAGCAACTTC+GGG 0.530877 6_1:+95937351 Msa0900440:CDS
GCAAGTTGCTACTTGTCCAC+AGG 0.541849 6_1:+95939006 Msa0900440:CDS
AACTGTGAAACCGACTTTGT+TGG 0.542867 6_1:+95938941 Msa0900440:CDS
CTAGCAGCTGAAGGAAGAAT+CGG 0.544679 6_1:+95938873 Msa0900440:CDS
AAACAATTAAGGGAAGAAAC+CGG 0.566124 6_1:+95938732 Msa0900440:intron
ACAGTCCATCATCCCTGCAC+CGG 0.573161 6_1:-95938751 None:intergenic
ATATAGTTGCTGCAATCCAA+GGG 0.588284 6_1:-95937324 None:intergenic
AAAGCTCTTGCTGAAACTGA+AGG 0.588472 6_1:+95938777 Msa0900440:CDS
TCCGCTGATAAGAAATCCGC+CGG 0.590589 6_1:+95938846 Msa0900440:CDS
TTGTAGTAAAAGACTTGGTG+AGG 0.601944 6_1:+95939215 Msa0900440:CDS
TTCAGCTGCTAGTCTTCCGG+CGG 0.610901 6_1:-95938862 None:intergenic
ATAGATACAAACTGAACCTG+TGG 0.617602 6_1:-95939022 None:intergenic
GCCGGAAGACTAGCAGCTGA+AGG 0.620385 6_1:+95938864 Msa0900440:CDS
CATTAGAGAGAAAATTGTCG+AGG 0.623126 6_1:+95939126 Msa0900440:CDS
TCCGGCGGATTTCTTATCAG+CGG 0.628514 6_1:-95938847 None:intergenic
ATTAGAGAGAAAATTGTCGA+GGG 0.630225 6_1:+95939127 Msa0900440:CDS
TAAGGGAAGAAACCGGTGCA+GGG 0.636260 6_1:+95938739 Msa0900440:intron
AATGCTCTATCAGAGAGTGA+AGG 0.661874 6_1:+95937406 Msa0900440:CDS
AAGTGTTGTAGTAAAAGACT+TGG 0.680171 6_1:+95939210 Msa0900440:CDS
TCGAGGGAAGAATCTCAAAG+AGG 0.687349 6_1:+95939143 Msa0900440:CDS
TTGGAGAGAATATTAAAGTG+CGG 0.692697 6_1:+95939254 Msa0900440:CDS
TATAGTTGCTGCAATCCAAG+GGG 0.716089 6_1:-95937323 None:intergenic
ATAGTTGCTGCAATCCAAGG+GGG 0.764311 6_1:-95937322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTAATTTAAATTTTCAAA+CGG - chr6_1:95938092-95938111 None:intergenic 10.0%
!! GAAAATTTAAATTAAGTTAA+TGG + chr6_1:95938095-95938114 Msa0900440:intron 10.0%
!!! CATTAATTTTATTTACTAAT+TGG + chr6_1:95938188-95938207 Msa0900440:intron 10.0%
!!! ACTTAATTTAAATTTTCAAA+CGG - chr6_1:95938092-95938111 None:intergenic 10.0%
!! GAAAATTTAAATTAAGTTAA+TGG + chr6_1:95938095-95938114 Msa0900440:intron 10.0%
!!! CATTAATTTTATTTACTAAT+TGG + chr6_1:95938188-95938207 Msa0900440:intron 10.0%
!!! ATGTAATGTATCTTTTAAAA+TGG - chr6_1:95937805-95937824 None:intergenic 15.0%
!!! AAATATGGAAATTTTAGAAT+GGG - chr6_1:95938139-95938158 None:intergenic 15.0%
!!! TAAATATGGAAATTTTAGAA+TGG - chr6_1:95938140-95938159 None:intergenic 15.0%
!! TATTATCTATGAATTATTCT+TGG + chr6_1:95938422-95938441 Msa0900440:intron 15.0%
!!! ATGTAATGTATCTTTTAAAA+TGG - chr6_1:95937805-95937824 None:intergenic 15.0%
!!! AAATATGGAAATTTTAGAAT+GGG - chr6_1:95938139-95938158 None:intergenic 15.0%
!!! TAAATATGGAAATTTTAGAA+TGG - chr6_1:95938140-95938159 None:intergenic 15.0%
!! TATTATCTATGAATTATTCT+TGG + chr6_1:95938422-95938441 Msa0900440:intron 15.0%
!! TAAATAACTCAATAACAAGT+AGG - chr6_1:95937594-95937613 None:intergenic 20.0%
!! GCAACTTTAAATTAAGTTAA+AGG - chr6_1:95937663-95937682 None:intergenic 20.0%
!! AGTATATCATGAATGAATAT+AGG + chr6_1:95937984-95938003 Msa0900440:intron 20.0%
!!! TCCTTTACTATCTTTTATTT+CGG - chr6_1:95938068-95938087 None:intergenic 20.0%
!! TTAAGTGAAAGAAAAATAGT+AGG - chr6_1:95938250-95938269 None:intergenic 20.0%
!! AACATGTTTACAAATATGAA+GGG - chr6_1:95938399-95938418 None:intergenic 20.0%
!! TAACATGTTTACAAATATGA+AGG - chr6_1:95938400-95938419 None:intergenic 20.0%
!! TAAATAACTCAATAACAAGT+AGG - chr6_1:95937594-95937613 None:intergenic 20.0%
!! GCAACTTTAAATTAAGTTAA+AGG - chr6_1:95937663-95937682 None:intergenic 20.0%
!! AGTATATCATGAATGAATAT+AGG + chr6_1:95937984-95938003 Msa0900440:intron 20.0%
!!! TCCTTTACTATCTTTTATTT+CGG - chr6_1:95938068-95938087 None:intergenic 20.0%
!! TTAAGTGAAAGAAAAATAGT+AGG - chr6_1:95938250-95938269 None:intergenic 20.0%
!! AACATGTTTACAAATATGAA+GGG - chr6_1:95938399-95938418 None:intergenic 20.0%
!! TAACATGTTTACAAATATGA+AGG - chr6_1:95938400-95938419 None:intergenic 20.0%
! ATTCATAGAACTACTTACTT+TGG - chr6_1:95937570-95937589 None:intergenic 25.0%
!! CTTAATTTAAAGTTGCAAAC+AGG + chr6_1:95937667-95937686 Msa0900440:intron 25.0%
!! AACTATCGTGTTAATTTTGA+TGG - chr6_1:95937886-95937905 None:intergenic 25.0%
!! AATATAGGCTAATTTGAAGT+TGG + chr6_1:95937999-95938018 Msa0900440:intron 25.0%
!!! CCTTTACTATCTTTTATTTC+GGG - chr6_1:95938067-95938086 None:intergenic 25.0%
! GTCATAAACAGACAAAAATT+AGG - chr6_1:95938464-95938483 None:intergenic 25.0%
!! GCATTTTATGAAATTATCAC+CGG - chr6_1:95938562-95938581 None:intergenic 25.0%
! TTGTGCACAAAAAGAAAATT+GGG + chr6_1:95938617-95938636 Msa0900440:intron 25.0%
!!! AATTGTTTTAATGTTCTGTC+AGG + chr6_1:95938674-95938693 Msa0900440:intron 25.0%
!! CTCATTGGTTAAACAATTAA+GGG + chr6_1:95938722-95938741 Msa0900440:intron 25.0%
!! AATTTTCTCTCTAATGTTCT+CGG - chr6_1:95939122-95939141 None:intergenic 25.0%
! ACACTTTCATCCTTAATAAA+AGG - chr6_1:95939196-95939215 None:intergenic 25.0%
! ATTCATAGAACTACTTACTT+TGG - chr6_1:95937570-95937589 None:intergenic 25.0%
!! CTTAATTTAAAGTTGCAAAC+AGG + chr6_1:95937667-95937686 Msa0900440:intron 25.0%
!! AACTATCGTGTTAATTTTGA+TGG - chr6_1:95937886-95937905 None:intergenic 25.0%
!! AATATAGGCTAATTTGAAGT+TGG + chr6_1:95937999-95938018 Msa0900440:intron 25.0%
!!! CCTTTACTATCTTTTATTTC+GGG - chr6_1:95938067-95938086 None:intergenic 25.0%
! GTCATAAACAGACAAAAATT+AGG - chr6_1:95938464-95938483 None:intergenic 25.0%
!! GCATTTTATGAAATTATCAC+CGG - chr6_1:95938562-95938581 None:intergenic 25.0%
! TTGTGCACAAAAAGAAAATT+GGG + chr6_1:95938617-95938636 Msa0900440:intron 25.0%
!!! AATTGTTTTAATGTTCTGTC+AGG + chr6_1:95938674-95938693 Msa0900440:intron 25.0%
!! CTCATTGGTTAAACAATTAA+GGG + chr6_1:95938722-95938741 Msa0900440:intron 25.0%
!! AATTTTCTCTCTAATGTTCT+CGG - chr6_1:95939122-95939141 None:intergenic 25.0%
! ACACTTTCATCCTTAATAAA+AGG - chr6_1:95939196-95939215 None:intergenic 25.0%
TTAACACGAAAACAACATCA+AGG - chr6_1:95937694-95937713 None:intergenic 30.0%
TTTAGTCATTTCTTCATGTC+AGG + chr6_1:95937714-95937733 Msa0900440:intron 30.0%
! GTTTAAAACGTCAACAATGT+AGG + chr6_1:95937748-95937767 Msa0900440:intron 30.0%
ATTACATCTTCAGTTCATCA+AGG + chr6_1:95937818-95937837 Msa0900440:intron 30.0%
CCCGAAATAAAAGATAGTAA+AGG + chr6_1:95938064-95938083 Msa0900440:intron 30.0%
TGTCTACTTTGGCATAAATA+TGG - chr6_1:95938154-95938173 None:intergenic 30.0%
!!! ATGCCAAAGTAGACATTTTT+TGG + chr6_1:95938159-95938178 Msa0900440:intron 30.0%
TCACCAAAAAATGTCTACTT+TGG - chr6_1:95938165-95938184 None:intergenic 30.0%
TGTTTACAAATATGAAGGGA+AGG - chr6_1:95938395-95938414 None:intergenic 30.0%
GTTGTGCACAAAAAGAAAAT+TGG + chr6_1:95938616-95938635 Msa0900440:intron 30.0%
CCTTAATTGTTTAACCAATG+AGG - chr6_1:95938724-95938743 None:intergenic 30.0%
! CCTCATTGGTTAAACAATTA+AGG + chr6_1:95938721-95938740 Msa0900440:intron 30.0%
AAACAATTAAGGGAAGAAAC+CGG + chr6_1:95938732-95938751 Msa0900440:intron 30.0%
! ATTTTCTCTCTAATGTTCTC+GGG - chr6_1:95939121-95939140 None:intergenic 30.0%
ATTAGAGAGAAAATTGTCGA+GGG + chr6_1:95939127-95939146 Msa0900440:CDS 30.0%
! AAGTGTTGTAGTAAAAGACT+TGG + chr6_1:95939210-95939229 Msa0900440:CDS 30.0%
TTGGAGAGAATATTAAAGTG+CGG + chr6_1:95939254-95939273 Msa0900440:CDS 30.0%
TTAACACGAAAACAACATCA+AGG - chr6_1:95937694-95937713 None:intergenic 30.0%
TTTAGTCATTTCTTCATGTC+AGG + chr6_1:95937714-95937733 Msa0900440:intron 30.0%
! GTTTAAAACGTCAACAATGT+AGG + chr6_1:95937748-95937767 Msa0900440:intron 30.0%
ATTACATCTTCAGTTCATCA+AGG + chr6_1:95937818-95937837 Msa0900440:intron 30.0%
CCCGAAATAAAAGATAGTAA+AGG + chr6_1:95938064-95938083 Msa0900440:intron 30.0%
TGTCTACTTTGGCATAAATA+TGG - chr6_1:95938154-95938173 None:intergenic 30.0%
!!! ATGCCAAAGTAGACATTTTT+TGG + chr6_1:95938159-95938178 Msa0900440:intron 30.0%
TCACCAAAAAATGTCTACTT+TGG - chr6_1:95938165-95938184 None:intergenic 30.0%
TGTTTACAAATATGAAGGGA+AGG - chr6_1:95938395-95938414 None:intergenic 30.0%
GTTGTGCACAAAAAGAAAAT+TGG + chr6_1:95938616-95938635 Msa0900440:intron 30.0%
CCTTAATTGTTTAACCAATG+AGG - chr6_1:95938724-95938743 None:intergenic 30.0%
! CCTCATTGGTTAAACAATTA+AGG + chr6_1:95938721-95938740 Msa0900440:intron 30.0%
AAACAATTAAGGGAAGAAAC+CGG + chr6_1:95938732-95938751 Msa0900440:intron 30.0%
! ATTTTCTCTCTAATGTTCTC+GGG - chr6_1:95939121-95939140 None:intergenic 30.0%
ATTAGAGAGAAAATTGTCGA+GGG + chr6_1:95939127-95939146 Msa0900440:CDS 30.0%
! AAGTGTTGTAGTAAAAGACT+TGG + chr6_1:95939210-95939229 Msa0900440:CDS 30.0%
TTGGAGAGAATATTAAAGTG+CGG + chr6_1:95939254-95939273 Msa0900440:CDS 30.0%
ATATAGTTGCTGCAATCCAA+GGG - chr6_1:95937327-95937346 None:intergenic 35.0%
!!! AAATCCTGGCTTTTTTCCTT+AGG - chr6_1:95937456-95937475 None:intergenic 35.0%
! TTACTTTGGTTCAGTTTCCT+TGG - chr6_1:95937556-95937575 None:intergenic 35.0%
! AAATTAAGTTAATGGACCCC+TGG + chr6_1:95938103-95938122 Msa0900440:intron 35.0%
ACAAATATGAAGGGAAGGTT+AGG - chr6_1:95938390-95938409 None:intergenic 35.0%
TCAAATGTCTGTGTTTGTGT+CGG - chr6_1:95938512-95938531 None:intergenic 35.0%
ACAACTAACACCTACATATG+TGG - chr6_1:95938601-95938620 None:intergenic 35.0%
AACTGAGAAATTCAAGGAGT+TGG + chr6_1:95938967-95938986 Msa0900440:CDS 35.0%
ATAGATACAAACTGAACCTG+TGG - chr6_1:95939025-95939044 None:intergenic 35.0%
TTCTTTCGTCACAGTAGTTT+CGG - chr6_1:95939059-95939078 None:intergenic 35.0%
CATTAGAGAGAAAATTGTCG+AGG + chr6_1:95939126-95939145 Msa0900440:CDS 35.0%
!! TCTAGAGCAGCCTTTTATTA+AGG + chr6_1:95939183-95939202 Msa0900440:CDS 35.0%
!! TTGTAGTAAAAGACTTGGTG+AGG + chr6_1:95939215-95939234 Msa0900440:CDS 35.0%
AGGCAAAGTATAGCTACTAT+TGG + chr6_1:95939235-95939254 Msa0900440:CDS 35.0%
ATATAGTTGCTGCAATCCAA+GGG - chr6_1:95937327-95937346 None:intergenic 35.0%
!!! AAATCCTGGCTTTTTTCCTT+AGG - chr6_1:95937456-95937475 None:intergenic 35.0%
! TTACTTTGGTTCAGTTTCCT+TGG - chr6_1:95937556-95937575 None:intergenic 35.0%
! AAATTAAGTTAATGGACCCC+TGG + chr6_1:95938103-95938122 Msa0900440:intron 35.0%
ACAAATATGAAGGGAAGGTT+AGG - chr6_1:95938390-95938409 None:intergenic 35.0%
TCAAATGTCTGTGTTTGTGT+CGG - chr6_1:95938512-95938531 None:intergenic 35.0%
ACAACTAACACCTACATATG+TGG - chr6_1:95938601-95938620 None:intergenic 35.0%
AACTGAGAAATTCAAGGAGT+TGG + chr6_1:95938967-95938986 Msa0900440:CDS 35.0%
ATAGATACAAACTGAACCTG+TGG - chr6_1:95939025-95939044 None:intergenic 35.0%
TTCTTTCGTCACAGTAGTTT+CGG - chr6_1:95939059-95939078 None:intergenic 35.0%
CATTAGAGAGAAAATTGTCG+AGG + chr6_1:95939126-95939145 Msa0900440:CDS 35.0%
!! TCTAGAGCAGCCTTTTATTA+AGG + chr6_1:95939183-95939202 Msa0900440:CDS 35.0%
!! TTGTAGTAAAAGACTTGGTG+AGG + chr6_1:95939215-95939234 Msa0900440:CDS 35.0%
AGGCAAAGTATAGCTACTAT+TGG + chr6_1:95939235-95939254 Msa0900440:CDS 35.0%
TATAGTTGCTGCAATCCAAG+GGG - chr6_1:95937326-95937345 None:intergenic 40.0%
GATATAGTTGCTGCAATCCA+AGG - chr6_1:95937328-95937347 None:intergenic 40.0%
AATGCTCTATCAGAGAGTGA+AGG + chr6_1:95937406-95937425 Msa0900440:CDS 40.0%
TGACTTCAGCAGAAAAATCC+TGG - chr6_1:95937470-95937489 None:intergenic 40.0%
TCTTTCACTGGAGTAGTTAC+CGG - chr6_1:95937513-95937532 None:intergenic 40.0%
GTCATTTCTTCATGTCAGGT+TGG + chr6_1:95937718-95937737 Msa0900440:intron 40.0%
TTGGACTTCTGTTAACAACG+AGG - chr6_1:95937933-95937952 None:intergenic 40.0%
TGTTAACAGAAGTCCAACTG+TGG + chr6_1:95937936-95937955 Msa0900440:intron 40.0%
AATATGAAGGGAAGGTTAGG+AGG - chr6_1:95938387-95938406 None:intergenic 40.0%
TAACACTAACATGTCGACAC+CGG + chr6_1:95938540-95938559 Msa0900440:intron 40.0%
CTGAATGCAACCACATATGT+AGG + chr6_1:95938588-95938607 Msa0900440:intron 40.0%
TCAGGAAATCAACACAGTAG+TGG + chr6_1:95938692-95938711 Msa0900440:intron 40.0%
!!! AGTAGTGGTTTTGACCTCAT+TGG + chr6_1:95938707-95938726 Msa0900440:intron 40.0%
AAAGCTCTTGCTGAAACTGA+AGG + chr6_1:95938777-95938796 Msa0900440:CDS 40.0%
AACTGAAGGCGATCTTGAAA+AGG + chr6_1:95938791-95938810 Msa0900440:CDS 40.0%
CAAGCATGCCTCAGAAAAAA+GGG + chr6_1:95938816-95938835 Msa0900440:CDS 40.0%
!!! ATGAGAGACCCTTTTTTCTG+AGG - chr6_1:95938827-95938846 None:intergenic 40.0%
! AACTGTGAAACCGACTTTGT+TGG + chr6_1:95938941-95938960 Msa0900440:CDS 40.0%
TGGCAGAACTGAGAAATTCA+AGG + chr6_1:95938961-95938980 Msa0900440:CDS 40.0%
TCTTTCGTCACAGTAGTTTC+GGG - chr6_1:95939058-95939077 None:intergenic 40.0%
GGAAGAATCTCAAAGAGGTT+AGG + chr6_1:95939148-95939167 Msa0900440:CDS 40.0%
!! TTAAAGTGCGGCGTTTTGTT+CGG + chr6_1:95939266-95939285 Msa0900440:CDS 40.0%
TATAGTTGCTGCAATCCAAG+GGG - chr6_1:95937326-95937345 None:intergenic 40.0%
GATATAGTTGCTGCAATCCA+AGG - chr6_1:95937328-95937347 None:intergenic 40.0%
AATGCTCTATCAGAGAGTGA+AGG + chr6_1:95937406-95937425 Msa0900440:CDS 40.0%
TGACTTCAGCAGAAAAATCC+TGG - chr6_1:95937470-95937489 None:intergenic 40.0%
TCTTTCACTGGAGTAGTTAC+CGG - chr6_1:95937513-95937532 None:intergenic 40.0%
GTCATTTCTTCATGTCAGGT+TGG + chr6_1:95937718-95937737 Msa0900440:intron 40.0%
TTGGACTTCTGTTAACAACG+AGG - chr6_1:95937933-95937952 None:intergenic 40.0%
TGTTAACAGAAGTCCAACTG+TGG + chr6_1:95937936-95937955 Msa0900440:intron 40.0%
AATATGAAGGGAAGGTTAGG+AGG - chr6_1:95938387-95938406 None:intergenic 40.0%
TAACACTAACATGTCGACAC+CGG + chr6_1:95938540-95938559 Msa0900440:intron 40.0%
CTGAATGCAACCACATATGT+AGG + chr6_1:95938588-95938607 Msa0900440:intron 40.0%
TCAGGAAATCAACACAGTAG+TGG + chr6_1:95938692-95938711 Msa0900440:intron 40.0%
!!! AGTAGTGGTTTTGACCTCAT+TGG + chr6_1:95938707-95938726 Msa0900440:intron 40.0%
AAAGCTCTTGCTGAAACTGA+AGG + chr6_1:95938777-95938796 Msa0900440:CDS 40.0%
AACTGAAGGCGATCTTGAAA+AGG + chr6_1:95938791-95938810 Msa0900440:CDS 40.0%
CAAGCATGCCTCAGAAAAAA+GGG + chr6_1:95938816-95938835 Msa0900440:CDS 40.0%
!!! ATGAGAGACCCTTTTTTCTG+AGG - chr6_1:95938827-95938846 None:intergenic 40.0%
! AACTGTGAAACCGACTTTGT+TGG + chr6_1:95938941-95938960 Msa0900440:CDS 40.0%
TGGCAGAACTGAGAAATTCA+AGG + chr6_1:95938961-95938980 Msa0900440:CDS 40.0%
TCTTTCGTCACAGTAGTTTC+GGG - chr6_1:95939058-95939077 None:intergenic 40.0%
GGAAGAATCTCAAAGAGGTT+AGG + chr6_1:95939148-95939167 Msa0900440:CDS 40.0%
!! TTAAAGTGCGGCGTTTTGTT+CGG + chr6_1:95939266-95939285 Msa0900440:CDS 40.0%
ATAGTTGCTGCAATCCAAGG+GGG - chr6_1:95937325-95937344 None:intergenic 45.0%
CAGCACTTGTGAAGCAACTT+CGG + chr6_1:95937350-95937369 Msa0900440:CDS 45.0%
AGCACTTGTGAAGCAACTTC+GGG + chr6_1:95937351-95937370 Msa0900440:CDS 45.0%
! CGAAACAGGATCTGGAATGA+TGG + chr6_1:95937375-95937394 Msa0900440:CDS 45.0%
TCAAAGCACACAAGCTCCTA+AGG + chr6_1:95937437-95937456 Msa0900440:CDS 45.0%
AGCTCCTAAGGAAAAAAGCC+AGG + chr6_1:95937449-95937468 Msa0900440:CDS 45.0%
! CGGTTTTGCTGAAGTTTGTG+CGG - chr6_1:95937493-95937512 None:intergenic 45.0%
CGCACAAACTTCAGCAAAAC+CGG + chr6_1:95937491-95937510 Msa0900440:CDS 45.0%
GGTAACTACTCCAGTGAAAG+AGG + chr6_1:95937512-95937531 Msa0900440:intron 45.0%
TCATCGATCAGTACCACAGT+TGG - chr6_1:95937952-95937971 None:intergenic 45.0%
AATGGGCAAAACTATGCCAG+GGG - chr6_1:95938122-95938141 None:intergenic 45.0%
GAATGGGCAAAACTATGCCA+GGG - chr6_1:95938123-95938142 None:intergenic 45.0%
AGAATGGGCAAAACTATGCC+AGG - chr6_1:95938124-95938143 None:intergenic 45.0%
GCAAGCATGCCTCAGAAAAA+AGG + chr6_1:95938815-95938834 Msa0900440:CDS 45.0%
CTAGCAGCTGAAGGAAGAAT+CGG + chr6_1:95938873-95938892 Msa0900440:CDS 45.0%
CATTCACGATGCACACACAT+CGG + chr6_1:95938902-95938921 Msa0900440:intron 45.0%
CTCAGTTCTGCCAACAAAGT+CGG - chr6_1:95938954-95938973 None:intergenic 45.0%
TGTTCTCGGGTTTCGAATCA+AGG - chr6_1:95939108-95939127 None:intergenic 45.0%
TCGAGGGAAGAATCTCAAAG+AGG + chr6_1:95939143-95939162 Msa0900440:CDS 45.0%
!! CGTTTTGTTCGGTTCACTCT+TGG + chr6_1:95939277-95939296 Msa0900440:CDS 45.0%
ATAGTTGCTGCAATCCAAGG+GGG - chr6_1:95937325-95937344 None:intergenic 45.0%
CAGCACTTGTGAAGCAACTT+CGG + chr6_1:95937350-95937369 Msa0900440:CDS 45.0%
AGCACTTGTGAAGCAACTTC+GGG + chr6_1:95937351-95937370 Msa0900440:CDS 45.0%
! CGAAACAGGATCTGGAATGA+TGG + chr6_1:95937375-95937394 Msa0900440:CDS 45.0%
TCAAAGCACACAAGCTCCTA+AGG + chr6_1:95937437-95937456 Msa0900440:CDS 45.0%
AGCTCCTAAGGAAAAAAGCC+AGG + chr6_1:95937449-95937468 Msa0900440:CDS 45.0%
! CGGTTTTGCTGAAGTTTGTG+CGG - chr6_1:95937493-95937512 None:intergenic 45.0%
CGCACAAACTTCAGCAAAAC+CGG + chr6_1:95937491-95937510 Msa0900440:CDS 45.0%
GGTAACTACTCCAGTGAAAG+AGG + chr6_1:95937512-95937531 Msa0900440:intron 45.0%
TCATCGATCAGTACCACAGT+TGG - chr6_1:95937952-95937971 None:intergenic 45.0%
AATGGGCAAAACTATGCCAG+GGG - chr6_1:95938122-95938141 None:intergenic 45.0%
GAATGGGCAAAACTATGCCA+GGG - chr6_1:95938123-95938142 None:intergenic 45.0%
AGAATGGGCAAAACTATGCC+AGG - chr6_1:95938124-95938143 None:intergenic 45.0%
GCAAGCATGCCTCAGAAAAA+AGG + chr6_1:95938815-95938834 Msa0900440:CDS 45.0%
CTAGCAGCTGAAGGAAGAAT+CGG + chr6_1:95938873-95938892 Msa0900440:CDS 45.0%
CATTCACGATGCACACACAT+CGG + chr6_1:95938902-95938921 Msa0900440:intron 45.0%
CTCAGTTCTGCCAACAAAGT+CGG - chr6_1:95938954-95938973 None:intergenic 45.0%
TGTTCTCGGGTTTCGAATCA+AGG - chr6_1:95939108-95939127 None:intergenic 45.0%
TCGAGGGAAGAATCTCAAAG+AGG + chr6_1:95939143-95939162 Msa0900440:CDS 45.0%
!! CGTTTTGTTCGGTTCACTCT+TGG + chr6_1:95939277-95939296 Msa0900440:CDS 45.0%
CGAAGTTGCTTCACAAGTGC+TGG - chr6_1:95937352-95937371 None:intergenic 50.0%
AAGCAACTTCGGGACGAAAC+AGG + chr6_1:95937361-95937380 Msa0900440:CDS 50.0%
GTAGCAGGTTCCTCTTTCAC+TGG - chr6_1:95937525-95937544 None:intergenic 50.0%
ACCTGCTACTACAGAAGCCA+AGG + chr6_1:95937536-95937555 Msa0900440:intron 50.0%
TCCTTGGCTTCTGTAGTAGC+AGG - chr6_1:95937540-95937559 None:intergenic 50.0%
! GACGCATGCTGTAGTTTTCG+AGG - chr6_1:95937641-95937660 None:intergenic 50.0%
TTGGCTTAGCTGTCACGCAA+TGG + chr6_1:95938207-95938226 Msa0900440:intron 50.0%
TTAAGGGAAGAAACCGGTGC+AGG + chr6_1:95938738-95938757 Msa0900440:intron 50.0%
TAAGGGAAGAAACCGGTGCA+GGG + chr6_1:95938739-95938758 Msa0900440:intron 50.0%
TCCGCTGATAAGAAATCCGC+CGG + chr6_1:95938846-95938865 Msa0900440:CDS 50.0%
! TCCGGCGGATTTCTTATCAG+CGG - chr6_1:95938850-95938869 None:intergenic 50.0%
!! TCCTTCAGCTGCTAGTCTTC+CGG - chr6_1:95938868-95938887 None:intergenic 50.0%
! GCAAGTTGCTACTTGTCCAC+AGG + chr6_1:95939006-95939025 Msa0900440:CDS 50.0%
CGAAGTTGCTTCACAAGTGC+TGG - chr6_1:95937352-95937371 None:intergenic 50.0%
AAGCAACTTCGGGACGAAAC+AGG + chr6_1:95937361-95937380 Msa0900440:CDS 50.0%
GTAGCAGGTTCCTCTTTCAC+TGG - chr6_1:95937525-95937544 None:intergenic 50.0%
ACCTGCTACTACAGAAGCCA+AGG + chr6_1:95937536-95937555 Msa0900440:intron 50.0%
TCCTTGGCTTCTGTAGTAGC+AGG - chr6_1:95937540-95937559 None:intergenic 50.0%
! GACGCATGCTGTAGTTTTCG+AGG - chr6_1:95937641-95937660 None:intergenic 50.0%
TTGGCTTAGCTGTCACGCAA+TGG + chr6_1:95938207-95938226 Msa0900440:intron 50.0%
TTAAGGGAAGAAACCGGTGC+AGG + chr6_1:95938738-95938757 Msa0900440:intron 50.0%
TAAGGGAAGAAACCGGTGCA+GGG + chr6_1:95938739-95938758 Msa0900440:intron 50.0%
TCCGCTGATAAGAAATCCGC+CGG + chr6_1:95938846-95938865 Msa0900440:CDS 50.0%
! TCCGGCGGATTTCTTATCAG+CGG - chr6_1:95938850-95938869 None:intergenic 50.0%
!! TCCTTCAGCTGCTAGTCTTC+CGG - chr6_1:95938868-95938887 None:intergenic 50.0%
! GCAAGTTGCTACTTGTCCAC+AGG + chr6_1:95939006-95939025 Msa0900440:CDS 50.0%
CTTCGGGACGAAACAGGATC+TGG + chr6_1:95937367-95937386 Msa0900440:CDS 55.0%
AGAAACCGGTGCAGGGATGA+TGG + chr6_1:95938746-95938765 Msa0900440:CDS 55.0%
ACAGTCCATCATCCCTGCAC+CGG - chr6_1:95938754-95938773 None:intergenic 55.0%
!! TTCAGCTGCTAGTCTTCCGG+CGG - chr6_1:95938865-95938884 None:intergenic 55.0%
CTTCGGGACGAAACAGGATC+TGG + chr6_1:95937367-95937386 Msa0900440:CDS 55.0%
AGAAACCGGTGCAGGGATGA+TGG + chr6_1:95938746-95938765 Msa0900440:CDS 55.0%
ACAGTCCATCATCCCTGCAC+CGG - chr6_1:95938754-95938773 None:intergenic 55.0%
!! TTCAGCTGCTAGTCTTCCGG+CGG - chr6_1:95938865-95938884 None:intergenic 55.0%
GTTGCTGCAATCCAAGGGGG+CGG - chr6_1:95937322-95937341 None:intergenic 60.0%
GCCGGAAGACTAGCAGCTGA+AGG + chr6_1:95938864-95938883 Msa0900440:CDS 60.0%
GTTGCTGCAATCCAAGGGGG+CGG - chr6_1:95937322-95937341 None:intergenic 60.0%
GCCGGAAGACTAGCAGCTGA+AGG + chr6_1:95938864-95938883 Msa0900440:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95937310 95939336 95937310 ID=Msa0900440;Name=Msa0900440
chr6_1 mRNA 95937310 95939336 95937310 ID=Msa0900440-mRNA-1;Parent=Msa0900440;Name=Msa0900440-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|250
chr6_1 exon 95937310 95937512 95937310 ID=Msa0900440-mRNA-1:exon:16681;Parent=Msa0900440-mRNA-1
chr6_1 exon 95938743 95938894 95938743 ID=Msa0900440-mRNA-1:exon:16682;Parent=Msa0900440-mRNA-1
chr6_1 exon 95938939 95939336 95938939 ID=Msa0900440-mRNA-1:exon:16683;Parent=Msa0900440-mRNA-1
chr6_1 CDS 95937310 95937512 95937310 ID=Msa0900440-mRNA-1:cds;Parent=Msa0900440-mRNA-1
chr6_1 CDS 95938743 95938894 95938743 ID=Msa0900440-mRNA-1:cds;Parent=Msa0900440-mRNA-1
chr6_1 CDS 95938939 95939336 95938939 ID=Msa0900440-mRNA-1:cds;Parent=Msa0900440-mRNA-1
Gene Sequence

>Msa0900440

ATGTCTGTTCCGCCCCCTTGGATTGCAGCAACTATATCACCAGCACTTGTGAAGCAACTTCGGGACGAAACAGGATCTGGAATGATGGACTGCAAAAATGCTCTATCAGAGAGTGAAGGTGACATTATCAAAGCACACAAGCTCCTAAGGAAAAAAGCCAGGATTTTTCTGCTGAAGTCACCGCACAAACTTCAGCAAAACCGGGAAGAAACCGGTGCAGGGATGATGGACTGTAAGAAAGCTCTTGCTGAAACTGAAGGCGATCTTGAAAAGGCGCAAGCATGCCTCAGAAAAAAGGGTCTCTCATCCGCTGATAAGAAATCCGCCGGAAGACTAGCAGCTGAAGGAAGAATCGTGAACTGTGAAACCGACTTTGTTGGCAGAACTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTACTTGTCCACAGGTTCAGTTTGTATCTATTGAAGATATTCCCGAAACTACTGTGACGAAAGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGATTCGAAACCCGAGAACATTAGAGAGAAAATTGTCGAGGGAAGAATCTCAAAGAGGTTAGGAGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAAGGATGAAAGTGTTGTAGTAAAAGACTTGGTGAGGCAAAGTATAGCTACTATTGGAGAGAATATTAAAGTGCGGCGTTTTGTTCGGTTCACTCTTGGAGAAACAATTCAAAAAGAAACAGCTGTACCAGCATAG

Protein sequence

>Msa0900440

MSVPPPWIAATISPALVKQLRDETGSGMMDCKNALSESEGDIIKAHKLLRKKARIFLLKSPHKLQQNREETGAGMMDCKKALAETEGDLEKAQACLRKKGLSSADKKSAGRLAAEGRIVNCETDFVGRTEKFKELVDDLAMQVATCPQVQFVSIEDIPETTVTKEKELEMQREDLDSKPENIREKIVEGRISKRLGELALLEQPFIKDESVVVKDLVRQSIATIGENIKVRRFVRFTLGETIQKETAVPA*