Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900440 | XP_039682652.1 | 56.574 | 251 | 47 | 3 | 10 | 246 | 586 | 788 | 2.44e-75 | 258 |
| Msa0900440 | XP_039682652.1 | 82.710 | 214 | 20 | 3 | 51 | 250 | 823 | 1033 | 3.81e-106 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900440 | sp|Q9SZD6|PETS_ARATH | 76.440 | 191 | 30 | 2 | 64 | 240 | 762 | 951 | 2.41e-87 | 281 |
| Msa0900440 | sp|Q9SZD6|PETS_ARATH | 66.169 | 201 | 53 | 2 | 60 | 246 | 520 | 719 | 1.68e-78 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900440 | G7KPU0 | 56.574 | 251 | 47 | 3 | 10 | 246 | 607 | 809 | 1.49e-75 | 257 |
| Msa0900440 | G7KPU0 | 82.710 | 214 | 20 | 3 | 51 | 250 | 844 | 1054 | 2.61e-106 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0900440 | Msa0965600 | 0.806337 | 8.638145e-50 | -8.615850e-47 |
| Msa0900440 | Msa1153110 | 0.800468 | 1.420901e-48 | -8.615850e-47 |
| Msa0900440 | Msa1457040 | 0.838565 | 2.667227e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900440 | MtrunA17_Chr6g0486531 | 82.710 | 214 | 20 | 3 | 51 | 250 | 844 | 1054 | 5.03e-110 | 340 |
| Msa0900440 | MtrunA17_Chr6g0486531 | 56.574 | 251 | 47 | 3 | 10 | 246 | 607 | 809 | 2.87e-79 | 257 |
| Msa0900440 | MtrunA17_Chr2g0299581 | 67.647 | 170 | 24 | 5 | 96 | 250 | 37 | 190 | 7.57e-62 | 192 |
| Msa0900440 | MtrunA17_Chr6g0484381 | 65.269 | 167 | 14 | 3 | 90 | 242 | 36 | 172 | 1.66e-59 | 186 |
| Msa0900440 | MtrunA17_Chr6g0486321 | 66.875 | 160 | 34 | 3 | 65 | 223 | 46 | 187 | 1.19e-57 | 182 |
| Msa0900440 | MtrunA17_Chr6g0486241 | 58.192 | 177 | 32 | 4 | 57 | 233 | 42 | 176 | 7.51e-50 | 162 |
| Msa0900440 | MtrunA17_Chr6g0486461 | 81.720 | 93 | 17 | 0 | 146 | 238 | 11 | 103 | 2.82e-46 | 149 |
| Msa0900440 | MtrunA17_Chr6g0486491 | 65.138 | 109 | 9 | 4 | 76 | 170 | 1 | 94 | 8.04e-33 | 115 |
| Msa0900440 | MtrunA17_Chr6g0460441 | 42.500 | 200 | 51 | 6 | 1 | 195 | 1 | 141 | 1.50e-29 | 108 |
| Msa0900440 | MtrunA17_Chr6g0486281 | 89.362 | 47 | 5 | 0 | 141 | 187 | 1 | 47 | 7.98e-22 | 85.5 |
| Msa0900440 | MtrunA17_Chr6g0486211 | 70.000 | 70 | 20 | 1 | 57 | 126 | 17 | 85 | 9.95e-22 | 86.3 |
| Msa0900440 | MtrunA17_Chr2g0299591 | 61.017 | 59 | 21 | 1 | 42 | 100 | 6 | 62 | 3.77e-15 | 68.2 |
| Msa0900440 | MtrunA17_Chr2g0299591 | 58.696 | 46 | 19 | 0 | 11 | 56 | 20 | 65 | 2.37e-12 | 60.8 |
| Msa0900440 | MtrunA17_Chr6g0477831 | 45.679 | 81 | 39 | 1 | 93 | 168 | 10 | 90 | 2.45e-14 | 67.0 |
| Msa0900440 | MtrunA17_Chr6g0486301 | 47.826 | 69 | 26 | 1 | 119 | 187 | 1046 | 1104 | 5.02e-13 | 68.6 |
| Msa0900440 | MtrunA17_Chr6g0448841 | 29.670 | 182 | 78 | 5 | 64 | 232 | 32 | 176 | 1.02e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900440 | AT4G29060.1 | 76.440 | 191 | 30 | 2 | 64 | 240 | 762 | 951 | 2.45e-88 | 281 |
| Msa0900440 | AT4G29060.1 | 66.169 | 201 | 53 | 2 | 60 | 246 | 520 | 719 | 1.71e-79 | 257 |
| Msa0900440 | AT4G29060.2 | 70.256 | 195 | 37 | 3 | 60 | 240 | 520 | 707 | 3.09e-81 | 258 |
Find 45 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTTTCATCCTTAATAAA+AGG | 0.204824 | 6_1:-95939193 | None:intergenic |
| TTCTTTCGTCACAGTAGTTT+CGG | 0.227928 | 6_1:-95939056 | None:intergenic |
| TCCTTCAGCTGCTAGTCTTC+CGG | 0.358058 | 6_1:-95938865 | None:intergenic |
| CGCACAAACTTCAGCAAAAC+CGG | 0.399462 | 6_1:+95937491 | Msa0900440:CDS |
| TCTTTCGTCACAGTAGTTTC+GGG | 0.408181 | 6_1:-95939055 | None:intergenic |
| AAGCAACTTCGGGACGAAAC+AGG | 0.415386 | 6_1:+95937361 | Msa0900440:CDS |
| TGTTCTCGGGTTTCGAATCA+AGG | 0.417895 | 6_1:-95939105 | None:intergenic |
| AGGCAAAGTATAGCTACTAT+TGG | 0.441103 | 6_1:+95939235 | Msa0900440:CDS |
| GAAAACCTTGTAAGCTATGC+TGG | 0.445394 | 6_1:-95939328 | None:intergenic |
| GGAAGAATCTCAAAGAGGTT+AGG | 0.459157 | 6_1:+95939148 | Msa0900440:CDS |
| CTTCGGGACGAAACAGGATC+TGG | 0.465180 | 6_1:+95937367 | Msa0900440:CDS |
| CGAAGTTGCTTCACAAGTGC+TGG | 0.465644 | 6_1:-95937349 | None:intergenic |
| AACTGAGAAATTCAAGGAGT+TGG | 0.466646 | 6_1:+95938967 | Msa0900440:CDS |
| CAGCACTTGTGAAGCAACTT+CGG | 0.472018 | 6_1:+95937350 | Msa0900440:CDS |
| AGAAACCGGTGCAGGGATGA+TGG | 0.478121 | 6_1:+95938746 | Msa0900440:CDS |
| AACTGAAGGCGATCTTGAAA+AGG | 0.489152 | 6_1:+95938791 | Msa0900440:CDS |
| TCAAAGCACACAAGCTCCTA+AGG | 0.501433 | 6_1:+95937437 | Msa0900440:CDS |
| CTCAGTTCTGCCAACAAAGT+CGG | 0.502415 | 6_1:-95938951 | None:intergenic |
| CGAAACAGGATCTGGAATGA+TGG | 0.511701 | 6_1:+95937375 | Msa0900440:CDS |
| TTAAGGGAAGAAACCGGTGC+AGG | 0.512063 | 6_1:+95938738 | Msa0900440:intron |
| TGGCAGAACTGAGAAATTCA+AGG | 0.527151 | 6_1:+95938961 | Msa0900440:CDS |
| GATATAGTTGCTGCAATCCA+AGG | 0.530496 | 6_1:-95937325 | None:intergenic |
| AGCACTTGTGAAGCAACTTC+GGG | 0.530877 | 6_1:+95937351 | Msa0900440:CDS |
| GCAAGTTGCTACTTGTCCAC+AGG | 0.541849 | 6_1:+95939006 | Msa0900440:CDS |
| AACTGTGAAACCGACTTTGT+TGG | 0.542867 | 6_1:+95938941 | Msa0900440:CDS |
| CTAGCAGCTGAAGGAAGAAT+CGG | 0.544679 | 6_1:+95938873 | Msa0900440:CDS |
| AAACAATTAAGGGAAGAAAC+CGG | 0.566124 | 6_1:+95938732 | Msa0900440:intron |
| ACAGTCCATCATCCCTGCAC+CGG | 0.573161 | 6_1:-95938751 | None:intergenic |
| ATATAGTTGCTGCAATCCAA+GGG | 0.588284 | 6_1:-95937324 | None:intergenic |
| AAAGCTCTTGCTGAAACTGA+AGG | 0.588472 | 6_1:+95938777 | Msa0900440:CDS |
| TCCGCTGATAAGAAATCCGC+CGG | 0.590589 | 6_1:+95938846 | Msa0900440:CDS |
| TTGTAGTAAAAGACTTGGTG+AGG | 0.601944 | 6_1:+95939215 | Msa0900440:CDS |
| TTCAGCTGCTAGTCTTCCGG+CGG | 0.610901 | 6_1:-95938862 | None:intergenic |
| ATAGATACAAACTGAACCTG+TGG | 0.617602 | 6_1:-95939022 | None:intergenic |
| GCCGGAAGACTAGCAGCTGA+AGG | 0.620385 | 6_1:+95938864 | Msa0900440:CDS |
| CATTAGAGAGAAAATTGTCG+AGG | 0.623126 | 6_1:+95939126 | Msa0900440:CDS |
| TCCGGCGGATTTCTTATCAG+CGG | 0.628514 | 6_1:-95938847 | None:intergenic |
| ATTAGAGAGAAAATTGTCGA+GGG | 0.630225 | 6_1:+95939127 | Msa0900440:CDS |
| TAAGGGAAGAAACCGGTGCA+GGG | 0.636260 | 6_1:+95938739 | Msa0900440:intron |
| AATGCTCTATCAGAGAGTGA+AGG | 0.661874 | 6_1:+95937406 | Msa0900440:CDS |
| AAGTGTTGTAGTAAAAGACT+TGG | 0.680171 | 6_1:+95939210 | Msa0900440:CDS |
| TCGAGGGAAGAATCTCAAAG+AGG | 0.687349 | 6_1:+95939143 | Msa0900440:CDS |
| TTGGAGAGAATATTAAAGTG+CGG | 0.692697 | 6_1:+95939254 | Msa0900440:CDS |
| TATAGTTGCTGCAATCCAAG+GGG | 0.716089 | 6_1:-95937323 | None:intergenic |
| ATAGTTGCTGCAATCCAAGG+GGG | 0.764311 | 6_1:-95937322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTAATTTAAATTTTCAAA+CGG | - | chr6_1:95938092-95938111 | None:intergenic | 10.0% |
| !! | GAAAATTTAAATTAAGTTAA+TGG | + | chr6_1:95938095-95938114 | Msa0900440:intron | 10.0% |
| !!! | CATTAATTTTATTTACTAAT+TGG | + | chr6_1:95938188-95938207 | Msa0900440:intron | 10.0% |
| !!! | ACTTAATTTAAATTTTCAAA+CGG | - | chr6_1:95938092-95938111 | None:intergenic | 10.0% |
| !! | GAAAATTTAAATTAAGTTAA+TGG | + | chr6_1:95938095-95938114 | Msa0900440:intron | 10.0% |
| !!! | CATTAATTTTATTTACTAAT+TGG | + | chr6_1:95938188-95938207 | Msa0900440:intron | 10.0% |
| !!! | ATGTAATGTATCTTTTAAAA+TGG | - | chr6_1:95937805-95937824 | None:intergenic | 15.0% |
| !!! | AAATATGGAAATTTTAGAAT+GGG | - | chr6_1:95938139-95938158 | None:intergenic | 15.0% |
| !!! | TAAATATGGAAATTTTAGAA+TGG | - | chr6_1:95938140-95938159 | None:intergenic | 15.0% |
| !! | TATTATCTATGAATTATTCT+TGG | + | chr6_1:95938422-95938441 | Msa0900440:intron | 15.0% |
| !!! | ATGTAATGTATCTTTTAAAA+TGG | - | chr6_1:95937805-95937824 | None:intergenic | 15.0% |
| !!! | AAATATGGAAATTTTAGAAT+GGG | - | chr6_1:95938139-95938158 | None:intergenic | 15.0% |
| !!! | TAAATATGGAAATTTTAGAA+TGG | - | chr6_1:95938140-95938159 | None:intergenic | 15.0% |
| !! | TATTATCTATGAATTATTCT+TGG | + | chr6_1:95938422-95938441 | Msa0900440:intron | 15.0% |
| !! | TAAATAACTCAATAACAAGT+AGG | - | chr6_1:95937594-95937613 | None:intergenic | 20.0% |
| !! | GCAACTTTAAATTAAGTTAA+AGG | - | chr6_1:95937663-95937682 | None:intergenic | 20.0% |
| !! | AGTATATCATGAATGAATAT+AGG | + | chr6_1:95937984-95938003 | Msa0900440:intron | 20.0% |
| !!! | TCCTTTACTATCTTTTATTT+CGG | - | chr6_1:95938068-95938087 | None:intergenic | 20.0% |
| !! | TTAAGTGAAAGAAAAATAGT+AGG | - | chr6_1:95938250-95938269 | None:intergenic | 20.0% |
| !! | AACATGTTTACAAATATGAA+GGG | - | chr6_1:95938399-95938418 | None:intergenic | 20.0% |
| !! | TAACATGTTTACAAATATGA+AGG | - | chr6_1:95938400-95938419 | None:intergenic | 20.0% |
| !! | TAAATAACTCAATAACAAGT+AGG | - | chr6_1:95937594-95937613 | None:intergenic | 20.0% |
| !! | GCAACTTTAAATTAAGTTAA+AGG | - | chr6_1:95937663-95937682 | None:intergenic | 20.0% |
| !! | AGTATATCATGAATGAATAT+AGG | + | chr6_1:95937984-95938003 | Msa0900440:intron | 20.0% |
| !!! | TCCTTTACTATCTTTTATTT+CGG | - | chr6_1:95938068-95938087 | None:intergenic | 20.0% |
| !! | TTAAGTGAAAGAAAAATAGT+AGG | - | chr6_1:95938250-95938269 | None:intergenic | 20.0% |
| !! | AACATGTTTACAAATATGAA+GGG | - | chr6_1:95938399-95938418 | None:intergenic | 20.0% |
| !! | TAACATGTTTACAAATATGA+AGG | - | chr6_1:95938400-95938419 | None:intergenic | 20.0% |
| ! | ATTCATAGAACTACTTACTT+TGG | - | chr6_1:95937570-95937589 | None:intergenic | 25.0% |
| !! | CTTAATTTAAAGTTGCAAAC+AGG | + | chr6_1:95937667-95937686 | Msa0900440:intron | 25.0% |
| !! | AACTATCGTGTTAATTTTGA+TGG | - | chr6_1:95937886-95937905 | None:intergenic | 25.0% |
| !! | AATATAGGCTAATTTGAAGT+TGG | + | chr6_1:95937999-95938018 | Msa0900440:intron | 25.0% |
| !!! | CCTTTACTATCTTTTATTTC+GGG | - | chr6_1:95938067-95938086 | None:intergenic | 25.0% |
| ! | GTCATAAACAGACAAAAATT+AGG | - | chr6_1:95938464-95938483 | None:intergenic | 25.0% |
| !! | GCATTTTATGAAATTATCAC+CGG | - | chr6_1:95938562-95938581 | None:intergenic | 25.0% |
| ! | TTGTGCACAAAAAGAAAATT+GGG | + | chr6_1:95938617-95938636 | Msa0900440:intron | 25.0% |
| !!! | AATTGTTTTAATGTTCTGTC+AGG | + | chr6_1:95938674-95938693 | Msa0900440:intron | 25.0% |
| !! | CTCATTGGTTAAACAATTAA+GGG | + | chr6_1:95938722-95938741 | Msa0900440:intron | 25.0% |
| !! | AATTTTCTCTCTAATGTTCT+CGG | - | chr6_1:95939122-95939141 | None:intergenic | 25.0% |
| ! | ACACTTTCATCCTTAATAAA+AGG | - | chr6_1:95939196-95939215 | None:intergenic | 25.0% |
| ! | ATTCATAGAACTACTTACTT+TGG | - | chr6_1:95937570-95937589 | None:intergenic | 25.0% |
| !! | CTTAATTTAAAGTTGCAAAC+AGG | + | chr6_1:95937667-95937686 | Msa0900440:intron | 25.0% |
| !! | AACTATCGTGTTAATTTTGA+TGG | - | chr6_1:95937886-95937905 | None:intergenic | 25.0% |
| !! | AATATAGGCTAATTTGAAGT+TGG | + | chr6_1:95937999-95938018 | Msa0900440:intron | 25.0% |
| !!! | CCTTTACTATCTTTTATTTC+GGG | - | chr6_1:95938067-95938086 | None:intergenic | 25.0% |
| ! | GTCATAAACAGACAAAAATT+AGG | - | chr6_1:95938464-95938483 | None:intergenic | 25.0% |
| !! | GCATTTTATGAAATTATCAC+CGG | - | chr6_1:95938562-95938581 | None:intergenic | 25.0% |
| ! | TTGTGCACAAAAAGAAAATT+GGG | + | chr6_1:95938617-95938636 | Msa0900440:intron | 25.0% |
| !!! | AATTGTTTTAATGTTCTGTC+AGG | + | chr6_1:95938674-95938693 | Msa0900440:intron | 25.0% |
| !! | CTCATTGGTTAAACAATTAA+GGG | + | chr6_1:95938722-95938741 | Msa0900440:intron | 25.0% |
| !! | AATTTTCTCTCTAATGTTCT+CGG | - | chr6_1:95939122-95939141 | None:intergenic | 25.0% |
| ! | ACACTTTCATCCTTAATAAA+AGG | - | chr6_1:95939196-95939215 | None:intergenic | 25.0% |
| TTAACACGAAAACAACATCA+AGG | - | chr6_1:95937694-95937713 | None:intergenic | 30.0% | |
| TTTAGTCATTTCTTCATGTC+AGG | + | chr6_1:95937714-95937733 | Msa0900440:intron | 30.0% | |
| ! | GTTTAAAACGTCAACAATGT+AGG | + | chr6_1:95937748-95937767 | Msa0900440:intron | 30.0% |
| ATTACATCTTCAGTTCATCA+AGG | + | chr6_1:95937818-95937837 | Msa0900440:intron | 30.0% | |
| CCCGAAATAAAAGATAGTAA+AGG | + | chr6_1:95938064-95938083 | Msa0900440:intron | 30.0% | |
| TGTCTACTTTGGCATAAATA+TGG | - | chr6_1:95938154-95938173 | None:intergenic | 30.0% | |
| !!! | ATGCCAAAGTAGACATTTTT+TGG | + | chr6_1:95938159-95938178 | Msa0900440:intron | 30.0% |
| TCACCAAAAAATGTCTACTT+TGG | - | chr6_1:95938165-95938184 | None:intergenic | 30.0% | |
| TGTTTACAAATATGAAGGGA+AGG | - | chr6_1:95938395-95938414 | None:intergenic | 30.0% | |
| GTTGTGCACAAAAAGAAAAT+TGG | + | chr6_1:95938616-95938635 | Msa0900440:intron | 30.0% | |
| CCTTAATTGTTTAACCAATG+AGG | - | chr6_1:95938724-95938743 | None:intergenic | 30.0% | |
| ! | CCTCATTGGTTAAACAATTA+AGG | + | chr6_1:95938721-95938740 | Msa0900440:intron | 30.0% |
| AAACAATTAAGGGAAGAAAC+CGG | + | chr6_1:95938732-95938751 | Msa0900440:intron | 30.0% | |
| ! | ATTTTCTCTCTAATGTTCTC+GGG | - | chr6_1:95939121-95939140 | None:intergenic | 30.0% |
| ATTAGAGAGAAAATTGTCGA+GGG | + | chr6_1:95939127-95939146 | Msa0900440:CDS | 30.0% | |
| ! | AAGTGTTGTAGTAAAAGACT+TGG | + | chr6_1:95939210-95939229 | Msa0900440:CDS | 30.0% |
| TTGGAGAGAATATTAAAGTG+CGG | + | chr6_1:95939254-95939273 | Msa0900440:CDS | 30.0% | |
| TTAACACGAAAACAACATCA+AGG | - | chr6_1:95937694-95937713 | None:intergenic | 30.0% | |
| TTTAGTCATTTCTTCATGTC+AGG | + | chr6_1:95937714-95937733 | Msa0900440:intron | 30.0% | |
| ! | GTTTAAAACGTCAACAATGT+AGG | + | chr6_1:95937748-95937767 | Msa0900440:intron | 30.0% |
| ATTACATCTTCAGTTCATCA+AGG | + | chr6_1:95937818-95937837 | Msa0900440:intron | 30.0% | |
| CCCGAAATAAAAGATAGTAA+AGG | + | chr6_1:95938064-95938083 | Msa0900440:intron | 30.0% | |
| TGTCTACTTTGGCATAAATA+TGG | - | chr6_1:95938154-95938173 | None:intergenic | 30.0% | |
| !!! | ATGCCAAAGTAGACATTTTT+TGG | + | chr6_1:95938159-95938178 | Msa0900440:intron | 30.0% |
| TCACCAAAAAATGTCTACTT+TGG | - | chr6_1:95938165-95938184 | None:intergenic | 30.0% | |
| TGTTTACAAATATGAAGGGA+AGG | - | chr6_1:95938395-95938414 | None:intergenic | 30.0% | |
| GTTGTGCACAAAAAGAAAAT+TGG | + | chr6_1:95938616-95938635 | Msa0900440:intron | 30.0% | |
| CCTTAATTGTTTAACCAATG+AGG | - | chr6_1:95938724-95938743 | None:intergenic | 30.0% | |
| ! | CCTCATTGGTTAAACAATTA+AGG | + | chr6_1:95938721-95938740 | Msa0900440:intron | 30.0% |
| AAACAATTAAGGGAAGAAAC+CGG | + | chr6_1:95938732-95938751 | Msa0900440:intron | 30.0% | |
| ! | ATTTTCTCTCTAATGTTCTC+GGG | - | chr6_1:95939121-95939140 | None:intergenic | 30.0% |
| ATTAGAGAGAAAATTGTCGA+GGG | + | chr6_1:95939127-95939146 | Msa0900440:CDS | 30.0% | |
| ! | AAGTGTTGTAGTAAAAGACT+TGG | + | chr6_1:95939210-95939229 | Msa0900440:CDS | 30.0% |
| TTGGAGAGAATATTAAAGTG+CGG | + | chr6_1:95939254-95939273 | Msa0900440:CDS | 30.0% | |
| ATATAGTTGCTGCAATCCAA+GGG | - | chr6_1:95937327-95937346 | None:intergenic | 35.0% | |
| !!! | AAATCCTGGCTTTTTTCCTT+AGG | - | chr6_1:95937456-95937475 | None:intergenic | 35.0% |
| ! | TTACTTTGGTTCAGTTTCCT+TGG | - | chr6_1:95937556-95937575 | None:intergenic | 35.0% |
| ! | AAATTAAGTTAATGGACCCC+TGG | + | chr6_1:95938103-95938122 | Msa0900440:intron | 35.0% |
| ACAAATATGAAGGGAAGGTT+AGG | - | chr6_1:95938390-95938409 | None:intergenic | 35.0% | |
| TCAAATGTCTGTGTTTGTGT+CGG | - | chr6_1:95938512-95938531 | None:intergenic | 35.0% | |
| ACAACTAACACCTACATATG+TGG | - | chr6_1:95938601-95938620 | None:intergenic | 35.0% | |
| AACTGAGAAATTCAAGGAGT+TGG | + | chr6_1:95938967-95938986 | Msa0900440:CDS | 35.0% | |
| ATAGATACAAACTGAACCTG+TGG | - | chr6_1:95939025-95939044 | None:intergenic | 35.0% | |
| TTCTTTCGTCACAGTAGTTT+CGG | - | chr6_1:95939059-95939078 | None:intergenic | 35.0% | |
| CATTAGAGAGAAAATTGTCG+AGG | + | chr6_1:95939126-95939145 | Msa0900440:CDS | 35.0% | |
| !! | TCTAGAGCAGCCTTTTATTA+AGG | + | chr6_1:95939183-95939202 | Msa0900440:CDS | 35.0% |
| !! | TTGTAGTAAAAGACTTGGTG+AGG | + | chr6_1:95939215-95939234 | Msa0900440:CDS | 35.0% |
| AGGCAAAGTATAGCTACTAT+TGG | + | chr6_1:95939235-95939254 | Msa0900440:CDS | 35.0% | |
| ATATAGTTGCTGCAATCCAA+GGG | - | chr6_1:95937327-95937346 | None:intergenic | 35.0% | |
| !!! | AAATCCTGGCTTTTTTCCTT+AGG | - | chr6_1:95937456-95937475 | None:intergenic | 35.0% |
| ! | TTACTTTGGTTCAGTTTCCT+TGG | - | chr6_1:95937556-95937575 | None:intergenic | 35.0% |
| ! | AAATTAAGTTAATGGACCCC+TGG | + | chr6_1:95938103-95938122 | Msa0900440:intron | 35.0% |
| ACAAATATGAAGGGAAGGTT+AGG | - | chr6_1:95938390-95938409 | None:intergenic | 35.0% | |
| TCAAATGTCTGTGTTTGTGT+CGG | - | chr6_1:95938512-95938531 | None:intergenic | 35.0% | |
| ACAACTAACACCTACATATG+TGG | - | chr6_1:95938601-95938620 | None:intergenic | 35.0% | |
| AACTGAGAAATTCAAGGAGT+TGG | + | chr6_1:95938967-95938986 | Msa0900440:CDS | 35.0% | |
| ATAGATACAAACTGAACCTG+TGG | - | chr6_1:95939025-95939044 | None:intergenic | 35.0% | |
| TTCTTTCGTCACAGTAGTTT+CGG | - | chr6_1:95939059-95939078 | None:intergenic | 35.0% | |
| CATTAGAGAGAAAATTGTCG+AGG | + | chr6_1:95939126-95939145 | Msa0900440:CDS | 35.0% | |
| !! | TCTAGAGCAGCCTTTTATTA+AGG | + | chr6_1:95939183-95939202 | Msa0900440:CDS | 35.0% |
| !! | TTGTAGTAAAAGACTTGGTG+AGG | + | chr6_1:95939215-95939234 | Msa0900440:CDS | 35.0% |
| AGGCAAAGTATAGCTACTAT+TGG | + | chr6_1:95939235-95939254 | Msa0900440:CDS | 35.0% | |
| TATAGTTGCTGCAATCCAAG+GGG | - | chr6_1:95937326-95937345 | None:intergenic | 40.0% | |
| GATATAGTTGCTGCAATCCA+AGG | - | chr6_1:95937328-95937347 | None:intergenic | 40.0% | |
| AATGCTCTATCAGAGAGTGA+AGG | + | chr6_1:95937406-95937425 | Msa0900440:CDS | 40.0% | |
| TGACTTCAGCAGAAAAATCC+TGG | - | chr6_1:95937470-95937489 | None:intergenic | 40.0% | |
| TCTTTCACTGGAGTAGTTAC+CGG | - | chr6_1:95937513-95937532 | None:intergenic | 40.0% | |
| GTCATTTCTTCATGTCAGGT+TGG | + | chr6_1:95937718-95937737 | Msa0900440:intron | 40.0% | |
| TTGGACTTCTGTTAACAACG+AGG | - | chr6_1:95937933-95937952 | None:intergenic | 40.0% | |
| TGTTAACAGAAGTCCAACTG+TGG | + | chr6_1:95937936-95937955 | Msa0900440:intron | 40.0% | |
| AATATGAAGGGAAGGTTAGG+AGG | - | chr6_1:95938387-95938406 | None:intergenic | 40.0% | |
| TAACACTAACATGTCGACAC+CGG | + | chr6_1:95938540-95938559 | Msa0900440:intron | 40.0% | |
| CTGAATGCAACCACATATGT+AGG | + | chr6_1:95938588-95938607 | Msa0900440:intron | 40.0% | |
| TCAGGAAATCAACACAGTAG+TGG | + | chr6_1:95938692-95938711 | Msa0900440:intron | 40.0% | |
| !!! | AGTAGTGGTTTTGACCTCAT+TGG | + | chr6_1:95938707-95938726 | Msa0900440:intron | 40.0% |
| AAAGCTCTTGCTGAAACTGA+AGG | + | chr6_1:95938777-95938796 | Msa0900440:CDS | 40.0% | |
| AACTGAAGGCGATCTTGAAA+AGG | + | chr6_1:95938791-95938810 | Msa0900440:CDS | 40.0% | |
| CAAGCATGCCTCAGAAAAAA+GGG | + | chr6_1:95938816-95938835 | Msa0900440:CDS | 40.0% | |
| !!! | ATGAGAGACCCTTTTTTCTG+AGG | - | chr6_1:95938827-95938846 | None:intergenic | 40.0% |
| ! | AACTGTGAAACCGACTTTGT+TGG | + | chr6_1:95938941-95938960 | Msa0900440:CDS | 40.0% |
| TGGCAGAACTGAGAAATTCA+AGG | + | chr6_1:95938961-95938980 | Msa0900440:CDS | 40.0% | |
| TCTTTCGTCACAGTAGTTTC+GGG | - | chr6_1:95939058-95939077 | None:intergenic | 40.0% | |
| GGAAGAATCTCAAAGAGGTT+AGG | + | chr6_1:95939148-95939167 | Msa0900440:CDS | 40.0% | |
| !! | TTAAAGTGCGGCGTTTTGTT+CGG | + | chr6_1:95939266-95939285 | Msa0900440:CDS | 40.0% |
| TATAGTTGCTGCAATCCAAG+GGG | - | chr6_1:95937326-95937345 | None:intergenic | 40.0% | |
| GATATAGTTGCTGCAATCCA+AGG | - | chr6_1:95937328-95937347 | None:intergenic | 40.0% | |
| AATGCTCTATCAGAGAGTGA+AGG | + | chr6_1:95937406-95937425 | Msa0900440:CDS | 40.0% | |
| TGACTTCAGCAGAAAAATCC+TGG | - | chr6_1:95937470-95937489 | None:intergenic | 40.0% | |
| TCTTTCACTGGAGTAGTTAC+CGG | - | chr6_1:95937513-95937532 | None:intergenic | 40.0% | |
| GTCATTTCTTCATGTCAGGT+TGG | + | chr6_1:95937718-95937737 | Msa0900440:intron | 40.0% | |
| TTGGACTTCTGTTAACAACG+AGG | - | chr6_1:95937933-95937952 | None:intergenic | 40.0% | |
| TGTTAACAGAAGTCCAACTG+TGG | + | chr6_1:95937936-95937955 | Msa0900440:intron | 40.0% | |
| AATATGAAGGGAAGGTTAGG+AGG | - | chr6_1:95938387-95938406 | None:intergenic | 40.0% | |
| TAACACTAACATGTCGACAC+CGG | + | chr6_1:95938540-95938559 | Msa0900440:intron | 40.0% | |
| CTGAATGCAACCACATATGT+AGG | + | chr6_1:95938588-95938607 | Msa0900440:intron | 40.0% | |
| TCAGGAAATCAACACAGTAG+TGG | + | chr6_1:95938692-95938711 | Msa0900440:intron | 40.0% | |
| !!! | AGTAGTGGTTTTGACCTCAT+TGG | + | chr6_1:95938707-95938726 | Msa0900440:intron | 40.0% |
| AAAGCTCTTGCTGAAACTGA+AGG | + | chr6_1:95938777-95938796 | Msa0900440:CDS | 40.0% | |
| AACTGAAGGCGATCTTGAAA+AGG | + | chr6_1:95938791-95938810 | Msa0900440:CDS | 40.0% | |
| CAAGCATGCCTCAGAAAAAA+GGG | + | chr6_1:95938816-95938835 | Msa0900440:CDS | 40.0% | |
| !!! | ATGAGAGACCCTTTTTTCTG+AGG | - | chr6_1:95938827-95938846 | None:intergenic | 40.0% |
| ! | AACTGTGAAACCGACTTTGT+TGG | + | chr6_1:95938941-95938960 | Msa0900440:CDS | 40.0% |
| TGGCAGAACTGAGAAATTCA+AGG | + | chr6_1:95938961-95938980 | Msa0900440:CDS | 40.0% | |
| TCTTTCGTCACAGTAGTTTC+GGG | - | chr6_1:95939058-95939077 | None:intergenic | 40.0% | |
| GGAAGAATCTCAAAGAGGTT+AGG | + | chr6_1:95939148-95939167 | Msa0900440:CDS | 40.0% | |
| !! | TTAAAGTGCGGCGTTTTGTT+CGG | + | chr6_1:95939266-95939285 | Msa0900440:CDS | 40.0% |
| ATAGTTGCTGCAATCCAAGG+GGG | - | chr6_1:95937325-95937344 | None:intergenic | 45.0% | |
| CAGCACTTGTGAAGCAACTT+CGG | + | chr6_1:95937350-95937369 | Msa0900440:CDS | 45.0% | |
| AGCACTTGTGAAGCAACTTC+GGG | + | chr6_1:95937351-95937370 | Msa0900440:CDS | 45.0% | |
| ! | CGAAACAGGATCTGGAATGA+TGG | + | chr6_1:95937375-95937394 | Msa0900440:CDS | 45.0% |
| TCAAAGCACACAAGCTCCTA+AGG | + | chr6_1:95937437-95937456 | Msa0900440:CDS | 45.0% | |
| AGCTCCTAAGGAAAAAAGCC+AGG | + | chr6_1:95937449-95937468 | Msa0900440:CDS | 45.0% | |
| ! | CGGTTTTGCTGAAGTTTGTG+CGG | - | chr6_1:95937493-95937512 | None:intergenic | 45.0% |
| CGCACAAACTTCAGCAAAAC+CGG | + | chr6_1:95937491-95937510 | Msa0900440:CDS | 45.0% | |
| GGTAACTACTCCAGTGAAAG+AGG | + | chr6_1:95937512-95937531 | Msa0900440:intron | 45.0% | |
| TCATCGATCAGTACCACAGT+TGG | - | chr6_1:95937952-95937971 | None:intergenic | 45.0% | |
| AATGGGCAAAACTATGCCAG+GGG | - | chr6_1:95938122-95938141 | None:intergenic | 45.0% | |
| GAATGGGCAAAACTATGCCA+GGG | - | chr6_1:95938123-95938142 | None:intergenic | 45.0% | |
| AGAATGGGCAAAACTATGCC+AGG | - | chr6_1:95938124-95938143 | None:intergenic | 45.0% | |
| GCAAGCATGCCTCAGAAAAA+AGG | + | chr6_1:95938815-95938834 | Msa0900440:CDS | 45.0% | |
| CTAGCAGCTGAAGGAAGAAT+CGG | + | chr6_1:95938873-95938892 | Msa0900440:CDS | 45.0% | |
| CATTCACGATGCACACACAT+CGG | + | chr6_1:95938902-95938921 | Msa0900440:intron | 45.0% | |
| CTCAGTTCTGCCAACAAAGT+CGG | - | chr6_1:95938954-95938973 | None:intergenic | 45.0% | |
| TGTTCTCGGGTTTCGAATCA+AGG | - | chr6_1:95939108-95939127 | None:intergenic | 45.0% | |
| TCGAGGGAAGAATCTCAAAG+AGG | + | chr6_1:95939143-95939162 | Msa0900440:CDS | 45.0% | |
| !! | CGTTTTGTTCGGTTCACTCT+TGG | + | chr6_1:95939277-95939296 | Msa0900440:CDS | 45.0% |
| ATAGTTGCTGCAATCCAAGG+GGG | - | chr6_1:95937325-95937344 | None:intergenic | 45.0% | |
| CAGCACTTGTGAAGCAACTT+CGG | + | chr6_1:95937350-95937369 | Msa0900440:CDS | 45.0% | |
| AGCACTTGTGAAGCAACTTC+GGG | + | chr6_1:95937351-95937370 | Msa0900440:CDS | 45.0% | |
| ! | CGAAACAGGATCTGGAATGA+TGG | + | chr6_1:95937375-95937394 | Msa0900440:CDS | 45.0% |
| TCAAAGCACACAAGCTCCTA+AGG | + | chr6_1:95937437-95937456 | Msa0900440:CDS | 45.0% | |
| AGCTCCTAAGGAAAAAAGCC+AGG | + | chr6_1:95937449-95937468 | Msa0900440:CDS | 45.0% | |
| ! | CGGTTTTGCTGAAGTTTGTG+CGG | - | chr6_1:95937493-95937512 | None:intergenic | 45.0% |
| CGCACAAACTTCAGCAAAAC+CGG | + | chr6_1:95937491-95937510 | Msa0900440:CDS | 45.0% | |
| GGTAACTACTCCAGTGAAAG+AGG | + | chr6_1:95937512-95937531 | Msa0900440:intron | 45.0% | |
| TCATCGATCAGTACCACAGT+TGG | - | chr6_1:95937952-95937971 | None:intergenic | 45.0% | |
| AATGGGCAAAACTATGCCAG+GGG | - | chr6_1:95938122-95938141 | None:intergenic | 45.0% | |
| GAATGGGCAAAACTATGCCA+GGG | - | chr6_1:95938123-95938142 | None:intergenic | 45.0% | |
| AGAATGGGCAAAACTATGCC+AGG | - | chr6_1:95938124-95938143 | None:intergenic | 45.0% | |
| GCAAGCATGCCTCAGAAAAA+AGG | + | chr6_1:95938815-95938834 | Msa0900440:CDS | 45.0% | |
| CTAGCAGCTGAAGGAAGAAT+CGG | + | chr6_1:95938873-95938892 | Msa0900440:CDS | 45.0% | |
| CATTCACGATGCACACACAT+CGG | + | chr6_1:95938902-95938921 | Msa0900440:intron | 45.0% | |
| CTCAGTTCTGCCAACAAAGT+CGG | - | chr6_1:95938954-95938973 | None:intergenic | 45.0% | |
| TGTTCTCGGGTTTCGAATCA+AGG | - | chr6_1:95939108-95939127 | None:intergenic | 45.0% | |
| TCGAGGGAAGAATCTCAAAG+AGG | + | chr6_1:95939143-95939162 | Msa0900440:CDS | 45.0% | |
| !! | CGTTTTGTTCGGTTCACTCT+TGG | + | chr6_1:95939277-95939296 | Msa0900440:CDS | 45.0% |
| CGAAGTTGCTTCACAAGTGC+TGG | - | chr6_1:95937352-95937371 | None:intergenic | 50.0% | |
| AAGCAACTTCGGGACGAAAC+AGG | + | chr6_1:95937361-95937380 | Msa0900440:CDS | 50.0% | |
| GTAGCAGGTTCCTCTTTCAC+TGG | - | chr6_1:95937525-95937544 | None:intergenic | 50.0% | |
| ACCTGCTACTACAGAAGCCA+AGG | + | chr6_1:95937536-95937555 | Msa0900440:intron | 50.0% | |
| TCCTTGGCTTCTGTAGTAGC+AGG | - | chr6_1:95937540-95937559 | None:intergenic | 50.0% | |
| ! | GACGCATGCTGTAGTTTTCG+AGG | - | chr6_1:95937641-95937660 | None:intergenic | 50.0% |
| TTGGCTTAGCTGTCACGCAA+TGG | + | chr6_1:95938207-95938226 | Msa0900440:intron | 50.0% | |
| TTAAGGGAAGAAACCGGTGC+AGG | + | chr6_1:95938738-95938757 | Msa0900440:intron | 50.0% | |
| TAAGGGAAGAAACCGGTGCA+GGG | + | chr6_1:95938739-95938758 | Msa0900440:intron | 50.0% | |
| TCCGCTGATAAGAAATCCGC+CGG | + | chr6_1:95938846-95938865 | Msa0900440:CDS | 50.0% | |
| ! | TCCGGCGGATTTCTTATCAG+CGG | - | chr6_1:95938850-95938869 | None:intergenic | 50.0% |
| !! | TCCTTCAGCTGCTAGTCTTC+CGG | - | chr6_1:95938868-95938887 | None:intergenic | 50.0% |
| ! | GCAAGTTGCTACTTGTCCAC+AGG | + | chr6_1:95939006-95939025 | Msa0900440:CDS | 50.0% |
| CGAAGTTGCTTCACAAGTGC+TGG | - | chr6_1:95937352-95937371 | None:intergenic | 50.0% | |
| AAGCAACTTCGGGACGAAAC+AGG | + | chr6_1:95937361-95937380 | Msa0900440:CDS | 50.0% | |
| GTAGCAGGTTCCTCTTTCAC+TGG | - | chr6_1:95937525-95937544 | None:intergenic | 50.0% | |
| ACCTGCTACTACAGAAGCCA+AGG | + | chr6_1:95937536-95937555 | Msa0900440:intron | 50.0% | |
| TCCTTGGCTTCTGTAGTAGC+AGG | - | chr6_1:95937540-95937559 | None:intergenic | 50.0% | |
| ! | GACGCATGCTGTAGTTTTCG+AGG | - | chr6_1:95937641-95937660 | None:intergenic | 50.0% |
| TTGGCTTAGCTGTCACGCAA+TGG | + | chr6_1:95938207-95938226 | Msa0900440:intron | 50.0% | |
| TTAAGGGAAGAAACCGGTGC+AGG | + | chr6_1:95938738-95938757 | Msa0900440:intron | 50.0% | |
| TAAGGGAAGAAACCGGTGCA+GGG | + | chr6_1:95938739-95938758 | Msa0900440:intron | 50.0% | |
| TCCGCTGATAAGAAATCCGC+CGG | + | chr6_1:95938846-95938865 | Msa0900440:CDS | 50.0% | |
| ! | TCCGGCGGATTTCTTATCAG+CGG | - | chr6_1:95938850-95938869 | None:intergenic | 50.0% |
| !! | TCCTTCAGCTGCTAGTCTTC+CGG | - | chr6_1:95938868-95938887 | None:intergenic | 50.0% |
| ! | GCAAGTTGCTACTTGTCCAC+AGG | + | chr6_1:95939006-95939025 | Msa0900440:CDS | 50.0% |
| CTTCGGGACGAAACAGGATC+TGG | + | chr6_1:95937367-95937386 | Msa0900440:CDS | 55.0% | |
| AGAAACCGGTGCAGGGATGA+TGG | + | chr6_1:95938746-95938765 | Msa0900440:CDS | 55.0% | |
| ACAGTCCATCATCCCTGCAC+CGG | - | chr6_1:95938754-95938773 | None:intergenic | 55.0% | |
| !! | TTCAGCTGCTAGTCTTCCGG+CGG | - | chr6_1:95938865-95938884 | None:intergenic | 55.0% |
| CTTCGGGACGAAACAGGATC+TGG | + | chr6_1:95937367-95937386 | Msa0900440:CDS | 55.0% | |
| AGAAACCGGTGCAGGGATGA+TGG | + | chr6_1:95938746-95938765 | Msa0900440:CDS | 55.0% | |
| ACAGTCCATCATCCCTGCAC+CGG | - | chr6_1:95938754-95938773 | None:intergenic | 55.0% | |
| !! | TTCAGCTGCTAGTCTTCCGG+CGG | - | chr6_1:95938865-95938884 | None:intergenic | 55.0% |
| GTTGCTGCAATCCAAGGGGG+CGG | - | chr6_1:95937322-95937341 | None:intergenic | 60.0% | |
| GCCGGAAGACTAGCAGCTGA+AGG | + | chr6_1:95938864-95938883 | Msa0900440:CDS | 60.0% | |
| GTTGCTGCAATCCAAGGGGG+CGG | - | chr6_1:95937322-95937341 | None:intergenic | 60.0% | |
| GCCGGAAGACTAGCAGCTGA+AGG | + | chr6_1:95938864-95938883 | Msa0900440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95937310 | 95939336 | 95937310 | ID=Msa0900440;Name=Msa0900440 |
| chr6_1 | mRNA | 95937310 | 95939336 | 95937310 | ID=Msa0900440-mRNA-1;Parent=Msa0900440;Name=Msa0900440-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|250 |
| chr6_1 | exon | 95937310 | 95937512 | 95937310 | ID=Msa0900440-mRNA-1:exon:16681;Parent=Msa0900440-mRNA-1 |
| chr6_1 | exon | 95938743 | 95938894 | 95938743 | ID=Msa0900440-mRNA-1:exon:16682;Parent=Msa0900440-mRNA-1 |
| chr6_1 | exon | 95938939 | 95939336 | 95938939 | ID=Msa0900440-mRNA-1:exon:16683;Parent=Msa0900440-mRNA-1 |
| chr6_1 | CDS | 95937310 | 95937512 | 95937310 | ID=Msa0900440-mRNA-1:cds;Parent=Msa0900440-mRNA-1 |
| chr6_1 | CDS | 95938743 | 95938894 | 95938743 | ID=Msa0900440-mRNA-1:cds;Parent=Msa0900440-mRNA-1 |
| chr6_1 | CDS | 95938939 | 95939336 | 95938939 | ID=Msa0900440-mRNA-1:cds;Parent=Msa0900440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
