Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901250 | XP_039682730.1 | 71.348 | 178 | 12 | 2 | 73 | 250 | 16 | 154 | 6.73e-77 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901250 | sp|Q9CA59|NRP1_ARATH | 40.758 | 211 | 105 | 5 | 55 | 261 | 29 | 223 | 2.80e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901250 | A0A072UC75 | 71.348 | 178 | 12 | 2 | 73 | 250 | 16 | 154 | 3.21e-77 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0901250 | Msa1001790 | 0.931001 | 7.188640e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901250 | MtrunA17_Chr6g0487501 | 71.348 | 178 | 12 | 2 | 73 | 250 | 16 | 154 | 6.19e-81 | 241 |
| Msa0901250 | MtrunA17_Chr6g0487501 | 100.000 | 31 | 0 | 0 | 1 | 31 | 1 | 31 | 5.21e-12 | 62.8 |
| Msa0901250 | MtrunA17_Chr3g0092521 | 40.385 | 208 | 108 | 4 | 55 | 261 | 27 | 219 | 1.10e-44 | 152 |
| Msa0901250 | MtrunA17_Chr4g0060621 | 40.191 | 209 | 109 | 4 | 54 | 261 | 23 | 216 | 5.69e-43 | 147 |
| Msa0901250 | MtrunA17_Chr6g0487861 | 67.470 | 83 | 27 | 0 | 91 | 173 | 3 | 85 | 4.98e-35 | 121 |
| Msa0901250 | MtrunA17_Chr6g0487691 | 67.470 | 83 | 27 | 0 | 91 | 173 | 3 | 85 | 4.98e-35 | 121 |
| Msa0901250 | MtrunA17_Chr4g0064221 | 27.985 | 268 | 151 | 12 | 32 | 277 | 89 | 336 | 1.70e-20 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901250 | AT1G74560.1 | 40.758 | 211 | 105 | 5 | 55 | 261 | 29 | 223 | 2.84e-42 | 145 |
| Msa0901250 | AT1G74560.3 | 40.278 | 216 | 108 | 6 | 55 | 266 | 29 | 227 | 8.36e-41 | 142 |
| Msa0901250 | AT1G18800.1 | 39.623 | 212 | 106 | 6 | 55 | 261 | 25 | 219 | 4.69e-40 | 140 |
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATTCTCTTCAAATTCT+TGG | 0.214611 | 6_1:-97687041 | None:intergenic |
| AAAAGCACGGGACCAGAATT+TGG | 0.218919 | 6_1:-97687675 | None:intergenic |
| CTCACATCGCAGCTAAATTT+AGG | 0.226111 | 6_1:-97687365 | None:intergenic |
| GGATGAGAGGACTAGATTTC+TGG | 0.234760 | 6_1:+97687502 | Msa0901250:CDS |
| AGGCTTGGATTATCAAAATA+TGG | 0.245878 | 6_1:-97687836 | None:intergenic |
| TCAAATCTATTCCCAAATTC+TGG | 0.268767 | 6_1:+97687663 | Msa0901250:CDS |
| ATCAAGTTGTGTAAAGTAAA+AGG | 0.285420 | 6_1:+97688179 | Msa0901250:exon |
| GGACGAGAGGACTGAAGTTC+TGG | 0.288671 | 6_1:+97687298 | Msa0901250:CDS |
| TCAAATTCTTGGCCATTGTT+TGG | 0.304186 | 6_1:-97687030 | None:intergenic |
| GATAACAGTGTTTATGTTGC+TGG | 0.343726 | 6_1:+97688509 | Msa0901250:three_prime_UTR |
| CGATGTGAGGACTGAAGTTC+CGG | 0.345020 | 6_1:+97687541 | Msa0901250:CDS |
| GGTGATTGAATAGCCTGATT+TGG | 0.366158 | 6_1:-97687795 | None:intergenic |
| GGAAATGAGGTTTCCTGATC+AGG | 0.366272 | 6_1:+97688069 | Msa0901250:CDS |
| TCCTTATACTGCTCTATTCC+CGG | 0.370204 | 6_1:-97687560 | None:intergenic |
| AAGATAAGAAGTAGAAAGAT+TGG | 0.378870 | 6_1:+97688386 | Msa0901250:three_prime_UTR |
| CTGCTTGGAGTTTCTTTAAG+TGG | 0.390052 | 6_1:+97688023 | Msa0901250:CDS |
| AGCAACATAAACACTGTTAT+CGG | 0.390196 | 6_1:-97688507 | None:intergenic |
| GATGACAGGACTGAAGTTCT+AGG | 0.390710 | 6_1:+97687581 | Msa0901250:CDS |
| GACAATCAAGATGCCAAATC+AGG | 0.392487 | 6_1:+97687782 | Msa0901250:CDS |
| ATCTTATTAAGAACAAACTT+TGG | 0.397752 | 6_1:+97688098 | Msa0901250:CDS |
| CACGAGCTCATCATCCTTCT+CGG | 0.403172 | 6_1:-97687984 | None:intergenic |
| GTAAGAGACTTTGCAAGGCT+TGG | 0.406140 | 6_1:-97687851 | None:intergenic |
| TCACATCGCAGCTAAATTTA+GGG | 0.408737 | 6_1:-97687364 | None:intergenic |
| TTGGTACAGAGCAAGGGATC+TGG | 0.408750 | 6_1:+97688340 | Msa0901250:intron |
| GATGAGAGGACTAGATTTCT+GGG | 0.409586 | 6_1:+97687503 | Msa0901250:CDS |
| ATCGCTCTCAGGAACTTCAT+TGG | 0.412085 | 6_1:-97687942 | None:intergenic |
| AAAGCACGGGACCAGAATTT+GGG | 0.415546 | 6_1:-97687674 | None:intergenic |
| ATAAGATCAGCAACCTGATC+AGG | 0.416790 | 6_1:-97688082 | None:intergenic |
| TTCAATTGCCTAGCAAGGAT+TGG | 0.439915 | 6_1:-97687707 | None:intergenic |
| TCCGGGAATAGAGCAGTATA+AGG | 0.440676 | 6_1:+97687559 | Msa0901250:CDS |
| TACAACTATACAATGGAAAG+AGG | 0.440970 | 6_1:+97687907 | Msa0901250:CDS |
| GAGACTTACTTACAATGAAA+AGG | 0.451057 | 6_1:-97685152 | None:intergenic |
| TCCGTTCAAGTATTTACCTA+TGG | 0.460242 | 6_1:+97688126 | Msa0901250:CDS |
| TCGCTCTCAGGAACTTCATT+GGG | 0.466852 | 6_1:-97687941 | None:intergenic |
| GACGAGAGGACTGAAGTTCT+GGG | 0.483732 | 6_1:+97687299 | Msa0901250:CDS |
| TCATTGTCATCATCGCTCTC+AGG | 0.496020 | 6_1:-97687953 | None:intergenic |
| CTTCAACCTCAATAGAATTG+AGG | 0.501712 | 6_1:-97687760 | None:intergenic |
| TCACAGCCGTAAGGAGCAAA+AGG | 0.503154 | 6_1:+97688048 | Msa0901250:CDS |
| GGATGATGAGCTCGTGTATG+AGG | 0.507173 | 6_1:+97687991 | Msa0901250:CDS |
| GTATTTACCTATGGAACTTG+TGG | 0.508326 | 6_1:+97688135 | Msa0901250:CDS |
| TCGCAGCTAAATTTAGGGAT+AGG | 0.508667 | 6_1:-97687359 | None:intergenic |
| ATTGCCTAGCAAGGATTGGA+TGG | 0.511618 | 6_1:-97687703 | None:intergenic |
| TGGTACAGAGCAAGGGATCT+GGG | 0.516759 | 6_1:+97688341 | Msa0901250:intron |
| ATGAGGTGAAATTGACTGCT+TGG | 0.527582 | 6_1:+97688008 | Msa0901250:CDS |
| TAGAGCAGTATAAGGATGAC+AGG | 0.533449 | 6_1:+97687567 | Msa0901250:CDS |
| CCATGAAGGAAAACTAAAAG+AGG | 0.535511 | 6_1:+97687877 | Msa0901250:CDS |
| TGGCCCATCCAATCCTTGCT+AGG | 0.536542 | 6_1:+97687699 | Msa0901250:CDS |
| TCTTGTTCAATTGCCTAGCA+AGG | 0.536886 | 6_1:-97687712 | None:intergenic |
| AAGAGCTAATTGATAAGCGT+GGG | 0.545100 | 6_1:+97687633 | Msa0901250:CDS |
| AATCCAAGAGGAAATCGAAA+AGG | 0.547284 | 6_1:+97687057 | Msa0901250:CDS |
| AAGAGCTGTATGATAAGCAC+GGG | 0.548648 | 6_1:+97687324 | Msa0901250:CDS |
| GATGTGAGGACTGAAGTTCC+GGG | 0.551409 | 6_1:+97687542 | Msa0901250:CDS |
| TGAGTACCTCAATTCTATTG+AGG | 0.552670 | 6_1:+97687754 | Msa0901250:CDS |
| AGGAAAACTAAAAGAGGCTA+AGG | 0.553453 | 6_1:+97687883 | Msa0901250:CDS |
| GTAGAAGACGGATCGGAACA+AGG | 0.554185 | 6_1:-97685127 | None:intergenic |
| TCAGTTTCCACAAGTTCCAT+AGG | 0.555746 | 6_1:-97688142 | None:intergenic |
| ACGAGCTCATCATCCTTCTC+GGG | 0.555922 | 6_1:-97687983 | None:intergenic |
| CAATGAAGTTTGTCCCGAGA+AGG | 0.561166 | 6_1:+97687970 | Msa0901250:CDS |
| TGCTAGGCAATTGAACAAGA+AGG | 0.571727 | 6_1:+97687715 | Msa0901250:CDS |
| TTTAGATGTATAAGGATGAG+AGG | 0.573044 | 6_1:+97687489 | Msa0901250:intron |
| CAGGACTGAAGTTCTAGGAA+TGG | 0.582592 | 6_1:+97687586 | Msa0901250:CDS |
| TAAGTGGTTTCACAGCCGTA+AGG | 0.587536 | 6_1:+97688039 | Msa0901250:CDS |
| GGAACTTGTGGAAACTGATG+TGG | 0.588216 | 6_1:+97688147 | Msa0901250:CDS |
| AAAGAGCTAATTGATAAGCG+TGG | 0.591093 | 6_1:+97687632 | Msa0901250:CDS |
| AAGTCTCTTACCTTCCATGA+AGG | 0.591877 | 6_1:+97687863 | Msa0901250:CDS |
| TCCATAGGTAAATACTTGAA+CGG | 0.602061 | 6_1:-97688127 | None:intergenic |
| AAAGAGCTGTATGATAAGCA+CGG | 0.607491 | 6_1:+97687323 | Msa0901250:CDS |
| CTAAGGCTACAACTATACAA+TGG | 0.610324 | 6_1:+97687900 | Msa0901250:CDS |
| AAAGGAAGTAGAAGACGGAT+CGG | 0.612397 | 6_1:-97685134 | None:intergenic |
| GTAAGGAGCAAAAGGAAATG+AGG | 0.614553 | 6_1:+97688056 | Msa0901250:CDS |
| TTGCCTAGCAAGGATTGGAT+GGG | 0.614584 | 6_1:-97687702 | None:intergenic |
| AGTAGAAAGATTGGTAGCCG+AGG | 0.620924 | 6_1:+97688395 | Msa0901250:three_prime_UTR |
| TTGGATGGGCCATAAAAGCA+CGG | 0.620974 | 6_1:-97687688 | None:intergenic |
| TGGATGGGCCATAAAAGCAC+GGG | 0.623296 | 6_1:-97687687 | None:intergenic |
| GGAAGGTAAGAGACTTTGCA+AGG | 0.625436 | 6_1:-97687856 | None:intergenic |
| CTTCAACTAATAAAAGACCT+CGG | 0.626591 | 6_1:-97688412 | None:intergenic |
| AATGAAAAGGAAGTAGAAGA+CGG | 0.632339 | 6_1:-97685139 | None:intergenic |
| ACAACTATACAATGGAAAGA+GGG | 0.633519 | 6_1:+97687908 | Msa0901250:CDS |
| CTAGGAATGGAGCAGACACA+TGG | 0.633573 | 6_1:+97687599 | Msa0901250:CDS |
| CTTAGATGTACAAGGACGAG+AGG | 0.649578 | 6_1:+97687285 | Msa0901250:intron |
| GGTACTCATCAAATATCTCA+CGG | 0.650801 | 6_1:-97687739 | None:intergenic |
| ACTCGCGTGCATCCAAACAA+TGG | 0.663758 | 6_1:+97687018 | Msa0901250:exon |
| TAGAGCAGTATATCGATGTG+AGG | 0.674809 | 6_1:+97687528 | Msa0901250:CDS |
| GAATTTGAAGAGAATCCAAG+AGG | 0.678270 | 6_1:+97687045 | Msa0901250:CDS |
| CTTGTGGAAACTGATGTGGA+TGG | 0.685370 | 6_1:+97688151 | Msa0901250:CDS |
| ACTATGATCTTAGATGTACA+AGG | 0.687750 | 6_1:+97687277 | Msa0901250:intron |
| AGAGCTAATTGATAAGCGTG+GGG | 0.696262 | 6_1:+97687634 | Msa0901250:CDS |
| AGAGCTGTATGATAAGCACG+GGG | 0.790780 | 6_1:+97687325 | Msa0901250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTTTACTTTAAATATT+TGG | - | chr6_1:97686622-97686641 | None:intergenic | 10.0% |
| !! | AAAAGAATATTATTAAGAAT+TGG | + | chr6_1:97686921-97686940 | Msa0901250:intron | 10.0% |
| !!! | ATTATAATTTTAGATGTATA+AGG | + | chr6_1:97687481-97687500 | Msa0901250:intron | 10.0% |
| !!! | AAAGTTTAATTTGATTTTAT+TGG | + | chr6_1:97688321-97688340 | Msa0901250:intron | 10.0% |
| !!! | TTTTATTAGTTGAAGATAAA+AGG | + | chr6_1:97688420-97688439 | Msa0901250:three_prime_UTR | 15.0% |
| !!! | TAAGTTTTGAGAGAATATTT+GGG | - | chr6_1:97685459-97685478 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGAGAGAATATT+TGG | - | chr6_1:97685460-97685479 | None:intergenic | 20.0% |
| !!! | TATTTCTAGTGTGTAATTTA+TGG | + | chr6_1:97685568-97685587 | Msa0901250:intron | 20.0% |
| !! | GTGTAATTTATGTTTATGTT+TGG | + | chr6_1:97685783-97685802 | Msa0901250:intron | 20.0% |
| !! | TAACAAAGAAATTGATCTAA+AGG | - | chr6_1:97685933-97685952 | None:intergenic | 20.0% |
| !!! | ATCAATTTCTTTGTTATTTG+AGG | + | chr6_1:97685937-97685956 | Msa0901250:intron | 20.0% |
| !! | TAAAACTCAAAATCACAAAT+TGG | - | chr6_1:97686076-97686095 | None:intergenic | 20.0% |
| !!! | ATTTGTGATTTTGAGTTTTA+TGG | + | chr6_1:97686076-97686095 | Msa0901250:intron | 20.0% |
| !!! | TGATTTTTGTGTACATATTT+CGG | - | chr6_1:97686196-97686215 | None:intergenic | 20.0% |
| !! | AAATATGTACACAAAAATCA+AGG | + | chr6_1:97686196-97686215 | Msa0901250:intron | 20.0% |
| !!! | GTAACTTTTCATAAGAATTT+TGG | + | chr6_1:97686218-97686237 | Msa0901250:intron | 20.0% |
| !! | TATAATACATTGTTAGACAA+AGG | + | chr6_1:97686556-97686575 | Msa0901250:intron | 20.0% |
| !! | CTAATTAAGCAAAAAACTAT+TGG | - | chr6_1:97686826-97686845 | None:intergenic | 20.0% |
| !! | TATTGAACTAAATATGTGAT+AGG | + | chr6_1:97686895-97686914 | Msa0901250:intron | 20.0% |
| !! | TTACCATAAAGGAAAAATTA+GGG | - | chr6_1:97686986-97687005 | None:intergenic | 20.0% |
| !! | AAAAATAAAATGCGTGAAAT+TGG | - | chr6_1:97687086-97687105 | None:intergenic | 20.0% |
| !! | ATCTTATTAAGAACAAACTT+TGG | + | chr6_1:97688098-97688117 | Msa0901250:CDS | 20.0% |
| !!! | AATTTGTAGTAAAGTATTGA+AGG | + | chr6_1:97688262-97688281 | Msa0901250:intron | 20.0% |
| ! | AAATTACACACTAGTTAGTA+AGG | - | chr6_1:97685373-97685392 | None:intergenic | 25.0% |
| ! | ATGACTAACATGTTGAAAAA+AGG | + | chr6_1:97685397-97685416 | Msa0901250:intron | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | + | chr6_1:97685488-97685507 | Msa0901250:intron | 25.0% |
| ! | TAACAACAATTGAAGTCTTA+GGG | - | chr6_1:97685514-97685533 | None:intergenic | 25.0% |
| !! | TGATTTTGTCAAGTTATTAC+CGG | + | chr6_1:97685671-97685690 | Msa0901250:intron | 25.0% |
| !!! | TTCTTTGTTATTTGAGGATT+AGG | + | chr6_1:97685943-97685962 | Msa0901250:intron | 25.0% |
| !!! | TCTTTGTTATTTGAGGATTA+GGG | + | chr6_1:97685944-97685963 | Msa0901250:intron | 25.0% |
| ! | CATTAAAATAGACAATTCAG+AGG | - | chr6_1:97685977-97685996 | None:intergenic | 25.0% |
| ! | AACAAGAAAAACACAATTTG+CGG | - | chr6_1:97686138-97686157 | None:intergenic | 25.0% |
| ! | TGCGATTATTTATATGGTTT+AGG | + | chr6_1:97686410-97686429 | Msa0901250:intron | 25.0% |
| ! | TTATTTATATGGTTTAGGTG+TGG | + | chr6_1:97686415-97686434 | Msa0901250:intron | 25.0% |
| !!! | TTAAAAGCAGATTAGTCTTA+AGG | + | chr6_1:97686581-97686600 | Msa0901250:intron | 25.0% |
| ! | GAAAATTGGAAACTTTCAAT+TGG | - | chr6_1:97686680-97686699 | None:intergenic | 25.0% |
| !! | TGGAGAAAGTATATAAATCT+AGG | - | chr6_1:97686767-97686786 | None:intergenic | 25.0% |
| ! | AGGTAAAACACGTTTATATA+TGG | - | chr6_1:97686947-97686966 | None:intergenic | 25.0% |
| ! | GTTACCATAAAGGAAAAATT+AGG | - | chr6_1:97686987-97687006 | None:intergenic | 25.0% |
| ! | GTTAATTATTTAGTTGTGTC+GGG | - | chr6_1:97687167-97687186 | None:intergenic | 25.0% |
| ! | GGTTAATTATTTAGTTGTGT+CGG | - | chr6_1:97687168-97687187 | None:intergenic | 25.0% |
| !! | TGGATTTTCATCAAAGTTAA+AGG | - | chr6_1:97687819-97687838 | None:intergenic | 25.0% |
| !! | ATCAAGTTGTGTAAAGTAAA+AGG | + | chr6_1:97688179-97688198 | Msa0901250:exon | 25.0% |
| ! | AAGATAAGAAGTAGAAAGAT+TGG | + | chr6_1:97688386-97688405 | Msa0901250:three_prime_UTR | 25.0% |
| !!! | CTTTTTAAGTGTTGAATCTT+CGG | + | chr6_1:97688477-97688496 | Msa0901250:three_prime_UTR | 25.0% |
| ! | ACTGTGAGAGAAAAAGTTTT+CGG | - | chr6_1:97685101-97685120 | None:intergenic | 30.0% |
| AATGAAAAGGAAGTAGAAGA+CGG | - | chr6_1:97685142-97685161 | None:intergenic | 30.0% | |
| GAGACTTACTTACAATGAAA+AGG | - | chr6_1:97685155-97685174 | None:intergenic | 30.0% | |
| ! | ATAGTCTGGAGTTGAATTTA+GGG | - | chr6_1:97685183-97685202 | None:intergenic | 30.0% |
| AATGCAAGTCAATTCATCTT+TGG | - | chr6_1:97685335-97685354 | None:intergenic | 30.0% | |
| !! | ATGAATTGACTTGCATTGTA+TGG | + | chr6_1:97685338-97685357 | Msa0901250:intron | 30.0% |
| CTAACAACAATTGAAGTCTT+AGG | - | chr6_1:97685515-97685534 | None:intergenic | 30.0% | |
| GAGTATATAGTTGTTACTAG+AGG | - | chr6_1:97685542-97685561 | None:intergenic | 30.0% | |
| !!! | ACAATTAAACGCGTTTTTTG+CGG | - | chr6_1:97685820-97685839 | None:intergenic | 30.0% |
| AACGCGTTTAATTGTATTTG+TGG | + | chr6_1:97685825-97685844 | Msa0901250:intron | 30.0% | |
| ACGCGTTTAATTGTATTTGT+GGG | + | chr6_1:97685826-97685845 | Msa0901250:intron | 30.0% | |
| TTTACAAAATCCACGCAAAT+TGG | + | chr6_1:97685866-97685885 | Msa0901250:intron | 30.0% | |
| TTACAAAATCCACGCAAATT+GGG | + | chr6_1:97685867-97685886 | Msa0901250:intron | 30.0% | |
| !! | TAGCTGTTACTTTGACAAAT+TGG | - | chr6_1:97685908-97685927 | None:intergenic | 30.0% |
| TCACAACTTAGTGTGATTAA+GGG | - | chr6_1:97686008-97686027 | None:intergenic | 30.0% | |
| ATCACAACTTAGTGTGATTA+AGG | - | chr6_1:97686009-97686028 | None:intergenic | 30.0% | |
| ! | ATCACACTAAGTTGTGATTT+TGG | + | chr6_1:97686011-97686030 | Msa0901250:intron | 30.0% |
| ! | TCACACTAAGTTGTGATTTT+GGG | + | chr6_1:97686012-97686031 | Msa0901250:intron | 30.0% |
| !! | AAGTTGTGATTTTGGGTATT+AGG | + | chr6_1:97686019-97686038 | Msa0901250:intron | 30.0% |
| !! | AGTTGTGATTTTGGGTATTA+GGG | + | chr6_1:97686020-97686039 | Msa0901250:intron | 30.0% |
| TATTAGGGTTTCTAATTTGG+AGG | + | chr6_1:97686035-97686054 | Msa0901250:intron | 30.0% | |
| TGCAAATTAACCACTTCAAA+AGG | - | chr6_1:97686252-97686271 | None:intergenic | 30.0% | |
| GAAGCATGCGATTATTTATA+TGG | + | chr6_1:97686404-97686423 | Msa0901250:intron | 30.0% | |
| AAGTTACAAAAGCTCAAGTT+TGG | + | chr6_1:97686639-97686658 | Msa0901250:intron | 30.0% | |
| ! | GTTTCCAATTTTCATCTTTG+TGG | + | chr6_1:97686687-97686706 | Msa0901250:intron | 30.0% |
| ACAAGTGCACATAAAATACA+AGG | - | chr6_1:97686732-97686751 | None:intergenic | 30.0% | |
| ! | ACACCCTAATTTTTCCTTTA+TGG | + | chr6_1:97686980-97686999 | Msa0901250:intron | 30.0% |
| TTGGATTCTCTTCAAATTCT+TGG | - | chr6_1:97687044-97687063 | None:intergenic | 30.0% | |
| ! | AAAAACGAGAGGTAGATTTT+TGG | - | chr6_1:97687189-97687208 | None:intergenic | 30.0% |
| ACTATGATCTTAGATGTACA+AGG | + | chr6_1:97687277-97687296 | Msa0901250:intron | 30.0% | |
| TCACTTAACACATAAACAAG+AGG | - | chr6_1:97687404-97687423 | None:intergenic | 30.0% | |
| TTTAGATGTATAAGGATGAG+AGG | + | chr6_1:97687489-97687508 | Msa0901250:intron | 30.0% | |
| TCAAATCTATTCCCAAATTC+TGG | + | chr6_1:97687663-97687682 | Msa0901250:CDS | 30.0% | |
| AGGCTTGGATTATCAAAATA+TGG | - | chr6_1:97687839-97687858 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTTTCCTTCATGGA+AGG | - | chr6_1:97687876-97687895 | None:intergenic | 30.0% |
| TACAACTATACAATGGAAAG+AGG | + | chr6_1:97687907-97687926 | Msa0901250:CDS | 30.0% | |
| ACAACTATACAATGGAAAGA+GGG | + | chr6_1:97687908-97687927 | Msa0901250:CDS | 30.0% | |
| TCCATAGGTAAATACTTGAA+CGG | - | chr6_1:97688130-97688149 | None:intergenic | 30.0% | |
| !! | AGTATTGAAGGCTAACTTTT+TGG | + | chr6_1:97688274-97688293 | Msa0901250:intron | 30.0% |
| ! | ATTTTATTGGTACAGAGCAA+GGG | + | chr6_1:97688334-97688353 | Msa0901250:intron | 30.0% |
| CTTCAACTAATAAAAGACCT+CGG | - | chr6_1:97688415-97688434 | None:intergenic | 30.0% | |
| AGCAACATAAACACTGTTAT+CGG | - | chr6_1:97688510-97688529 | None:intergenic | 30.0% | |
| ! | CATAGTCTGGAGTTGAATTT+AGG | - | chr6_1:97685184-97685203 | None:intergenic | 35.0% |
| !! | CTCTCATAAGCCATTTTCAT+TGG | + | chr6_1:97685429-97685448 | Msa0901250:intron | 35.0% |
| TTTGGGAGAACCAATGAAAA+TGG | - | chr6_1:97685442-97685461 | None:intergenic | 35.0% | |
| CGCGTTTAATTGTATTTGTG+GGG | + | chr6_1:97685827-97685846 | Msa0901250:intron | 35.0% | |
| GCGTTTAATTGTATTTGTGG+GGG | + | chr6_1:97685828-97685847 | Msa0901250:intron | 35.0% | |
| ! | TGTATTTGTGGGGGTTATTT+TGG | + | chr6_1:97685837-97685856 | Msa0901250:intron | 35.0% |
| !! | GTATTTGTGGGGGTTATTTT+GGG | + | chr6_1:97685838-97685857 | Msa0901250:intron | 35.0% |
| !! | TATTTGTGGGGGTTATTTTG+GGG | + | chr6_1:97685839-97685858 | Msa0901250:intron | 35.0% |
| ! | ACTTTTTAACCCAATTTGCG+TGG | - | chr6_1:97685879-97685898 | None:intergenic | 35.0% |
| GGGTATTAGGGTTTCTAATT+TGG | + | chr6_1:97686032-97686051 | Msa0901250:intron | 35.0% | |
| ! | CAAACATTGATTAGTGCAGA+AGG | - | chr6_1:97686344-97686363 | None:intergenic | 35.0% |
| CAAGATTGTACACACTAGTA+GGG | - | chr6_1:97686469-97686488 | None:intergenic | 35.0% | |
| ACAAGATTGTACACACTAGT+AGG | - | chr6_1:97686470-97686489 | None:intergenic | 35.0% | |
| GTCTTAAGGTTTGACATGTA+TGG | + | chr6_1:97686595-97686614 | Msa0901250:intron | 35.0% | |
| AGCTCCACAAAGATGAAAAT+TGG | - | chr6_1:97686694-97686713 | None:intergenic | 35.0% | |
| GCTTAATTAGTTAGCGTTGT+TGG | + | chr6_1:97686836-97686855 | Msa0901250:intron | 35.0% | |
| TCAAATTCTTGGCCATTGTT+TGG | - | chr6_1:97687033-97687052 | None:intergenic | 35.0% | |
| GAATTTGAAGAGAATCCAAG+AGG | + | chr6_1:97687045-97687064 | Msa0901250:CDS | 35.0% | |
| AATCCAAGAGGAAATCGAAA+AGG | + | chr6_1:97687057-97687076 | Msa0901250:CDS | 35.0% | |
| ! | ATACCTTTTCGATTTCCTCT+TGG | - | chr6_1:97687063-97687082 | None:intergenic | 35.0% |
| TCAGATAACACAAAAACGAG+AGG | - | chr6_1:97687200-97687219 | None:intergenic | 35.0% | |
| AAAGAGCTGTATGATAAGCA+CGG | + | chr6_1:97687323-97687342 | Msa0901250:CDS | 35.0% | |
| TCACATCGCAGCTAAATTTA+GGG | - | chr6_1:97687367-97687386 | None:intergenic | 35.0% | |
| AAAGAGCTAATTGATAAGCG+TGG | + | chr6_1:97687632-97687651 | Msa0901250:CDS | 35.0% | |
| AAGAGCTAATTGATAAGCGT+GGG | + | chr6_1:97687633-97687652 | Msa0901250:CDS | 35.0% | |
| GGTACTCATCAAATATCTCA+CGG | - | chr6_1:97687742-97687761 | None:intergenic | 35.0% | |
| TGAGTACCTCAATTCTATTG+AGG | + | chr6_1:97687754-97687773 | Msa0901250:CDS | 35.0% | |
| CTTCAACCTCAATAGAATTG+AGG | - | chr6_1:97687763-97687782 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTAGTTTTCCTTCA+TGG | - | chr6_1:97687880-97687899 | None:intergenic | 35.0% |
| CCATGAAGGAAAACTAAAAG+AGG | + | chr6_1:97687877-97687896 | Msa0901250:CDS | 35.0% | |
| AGGAAAACTAAAAGAGGCTA+AGG | + | chr6_1:97687883-97687902 | Msa0901250:CDS | 35.0% | |
| CTAAGGCTACAACTATACAA+TGG | + | chr6_1:97687900-97687919 | Msa0901250:CDS | 35.0% | |
| ! | TCATTTCCTTTTGCTCCTTA+CGG | - | chr6_1:97688057-97688076 | None:intergenic | 35.0% |
| TCCGTTCAAGTATTTACCTA+TGG | + | chr6_1:97688126-97688145 | Msa0901250:CDS | 35.0% | |
| GTATTTACCTATGGAACTTG+TGG | + | chr6_1:97688135-97688154 | Msa0901250:CDS | 35.0% | |
| !!! | TGAAGGCTAACTTTTTGGTT+TGG | + | chr6_1:97688279-97688298 | Msa0901250:intron | 35.0% |
| ! | GATTTTATTGGTACAGAGCA+AGG | + | chr6_1:97688333-97688352 | Msa0901250:intron | 35.0% |
| GATAACAGTGTTTATGTTGC+TGG | + | chr6_1:97688509-97688528 | Msa0901250:three_prime_UTR | 35.0% | |
| ! | GAAAAAGTTTTCGGAGAGAG+CGG | - | chr6_1:97685092-97685111 | None:intergenic | 40.0% |
| AAAGGAAGTAGAAGACGGAT+CGG | - | chr6_1:97685137-97685156 | None:intergenic | 40.0% | |
| GAAGGCAACAAATCATAGTC+TGG | - | chr6_1:97685197-97685216 | None:intergenic | 40.0% | |
| ! | TGCCTTCATTTGTTAGTGCT+TGG | + | chr6_1:97685210-97685229 | Msa0901250:intron | 40.0% |
| ! | GCCTTCATTTGTTAGTGCTT+GGG | + | chr6_1:97685211-97685230 | Msa0901250:intron | 40.0% |
| ACCCAAGCACTAACAAATGA+AGG | - | chr6_1:97685215-97685234 | None:intergenic | 40.0% | |
| !!! | ATTACCGGTTTTGACGTGTT+TGG | + | chr6_1:97685686-97685705 | Msa0901250:intron | 40.0% |
| ! | AATTACACGCTAGTTTGCGA+GGG | - | chr6_1:97685771-97685790 | None:intergenic | 40.0% |
| ! | AAATTACACGCTAGTTTGCG+AGG | - | chr6_1:97685772-97685791 | None:intergenic | 40.0% |
| TTCTTATGTCTCATGGCAAC+GGG | - | chr6_1:97686387-97686406 | None:intergenic | 40.0% | |
| CTTCTTATGTCTCATGGCAA+CGG | - | chr6_1:97686388-97686407 | None:intergenic | 40.0% | |
| GTTCAGTTATGTAGCACACA+TGG | - | chr6_1:97686787-97686806 | None:intergenic | 40.0% | |
| TGTCTGTAGGGTTACCATAA+AGG | - | chr6_1:97686997-97687016 | None:intergenic | 40.0% | |
| ATTTAGTTGTGTCGGGTCTT+AGG | - | chr6_1:97687160-97687179 | None:intergenic | 40.0% | |
| AAGAGCTGTATGATAAGCAC+GGG | + | chr6_1:97687324-97687343 | Msa0901250:CDS | 40.0% | |
| TCGCAGCTAAATTTAGGGAT+AGG | - | chr6_1:97687362-97687381 | None:intergenic | 40.0% | |
| CTCACATCGCAGCTAAATTT+AGG | - | chr6_1:97687368-97687387 | None:intergenic | 40.0% | |
| GATGAGAGGACTAGATTTCT+GGG | + | chr6_1:97687503-97687522 | Msa0901250:CDS | 40.0% | |
| TAGAGCAGTATATCGATGTG+AGG | + | chr6_1:97687528-97687547 | Msa0901250:CDS | 40.0% | |
| TCCTTATACTGCTCTATTCC+CGG | - | chr6_1:97687563-97687582 | None:intergenic | 40.0% | |
| TAGAGCAGTATAAGGATGAC+AGG | + | chr6_1:97687567-97687586 | Msa0901250:CDS | 40.0% | |
| AGAGCTAATTGATAAGCGTG+GGG | + | chr6_1:97687634-97687653 | Msa0901250:CDS | 40.0% | |
| TTCAATTGCCTAGCAAGGAT+TGG | - | chr6_1:97687710-97687729 | None:intergenic | 40.0% | |
| TCTTGTTCAATTGCCTAGCA+AGG | - | chr6_1:97687715-97687734 | None:intergenic | 40.0% | |
| TGCTAGGCAATTGAACAAGA+AGG | + | chr6_1:97687715-97687734 | Msa0901250:CDS | 40.0% | |
| GACAATCAAGATGCCAAATC+AGG | + | chr6_1:97687782-97687801 | Msa0901250:CDS | 40.0% | |
| GGTGATTGAATAGCCTGATT+TGG | - | chr6_1:97687798-97687817 | None:intergenic | 40.0% | |
| AAGTCTCTTACCTTCCATGA+AGG | + | chr6_1:97687863-97687882 | Msa0901250:CDS | 40.0% | |
| ATGAGGTGAAATTGACTGCT+TGG | + | chr6_1:97688008-97688027 | Msa0901250:CDS | 40.0% | |
| CTGCTTGGAGTTTCTTTAAG+TGG | + | chr6_1:97688023-97688042 | Msa0901250:CDS | 40.0% | |
| GTAAGGAGCAAAAGGAAATG+AGG | + | chr6_1:97688056-97688075 | Msa0901250:CDS | 40.0% | |
| ATAAGATCAGCAACCTGATC+AGG | - | chr6_1:97688085-97688104 | None:intergenic | 40.0% | |
| TCAGTTTCCACAAGTTCCAT+AGG | - | chr6_1:97688145-97688164 | None:intergenic | 40.0% | |
| TGTCGTGTATGTGCTACAGA+GGG | - | chr6_1:97685624-97685643 | None:intergenic | 45.0% | |
| GACACCAAACACGTCAAAAC+CGG | - | chr6_1:97685693-97685712 | None:intergenic | 45.0% | |
| CGCATGCTTCTTATGTCTCA+TGG | - | chr6_1:97686394-97686413 | None:intergenic | 45.0% | |
| !! | AGGGTGTTTCGATTTTGTCG+AGG | - | chr6_1:97686967-97686986 | None:intergenic | 45.0% |
| CTTAGATGTACAAGGACGAG+AGG | + | chr6_1:97687285-97687304 | Msa0901250:intron | 45.0% | |
| AGAGCTGTATGATAAGCACG+GGG | + | chr6_1:97687325-97687344 | Msa0901250:CDS | 45.0% | |
| GGATGAGAGGACTAGATTTC+TGG | + | chr6_1:97687502-97687521 | Msa0901250:CDS | 45.0% | |
| TCCGGGAATAGAGCAGTATA+AGG | + | chr6_1:97687559-97687578 | Msa0901250:CDS | 45.0% | |
| GATGACAGGACTGAAGTTCT+AGG | + | chr6_1:97687581-97687600 | Msa0901250:CDS | 45.0% | |
| !! | CAGGACTGAAGTTCTAGGAA+TGG | + | chr6_1:97687586-97687605 | Msa0901250:CDS | 45.0% |
| AAAGCACGGGACCAGAATTT+GGG | - | chr6_1:97687677-97687696 | None:intergenic | 45.0% | |
| ! | AAAAGCACGGGACCAGAATT+TGG | - | chr6_1:97687678-97687697 | None:intergenic | 45.0% |
| ! | ATTCTGGTCCCGTGCTTTTA+TGG | + | chr6_1:97687679-97687698 | Msa0901250:CDS | 45.0% |
| TTGGATGGGCCATAAAAGCA+CGG | - | chr6_1:97687691-97687710 | None:intergenic | 45.0% | |
| TTGCCTAGCAAGGATTGGAT+GGG | - | chr6_1:97687705-97687724 | None:intergenic | 45.0% | |
| ATTGCCTAGCAAGGATTGGA+TGG | - | chr6_1:97687706-97687725 | None:intergenic | 45.0% | |
| GTAAGAGACTTTGCAAGGCT+TGG | - | chr6_1:97687854-97687873 | None:intergenic | 45.0% | |
| GGAAGGTAAGAGACTTTGCA+AGG | - | chr6_1:97687859-97687878 | None:intergenic | 45.0% | |
| TCGCTCTCAGGAACTTCATT+GGG | - | chr6_1:97687944-97687963 | None:intergenic | 45.0% | |
| ATCGCTCTCAGGAACTTCAT+TGG | - | chr6_1:97687945-97687964 | None:intergenic | 45.0% | |
| TCATTGTCATCATCGCTCTC+AGG | - | chr6_1:97687956-97687975 | None:intergenic | 45.0% | |
| CAATGAAGTTTGTCCCGAGA+AGG | + | chr6_1:97687970-97687989 | Msa0901250:CDS | 45.0% | |
| TAAGTGGTTTCACAGCCGTA+AGG | + | chr6_1:97688039-97688058 | Msa0901250:CDS | 45.0% | |
| GGAAATGAGGTTTCCTGATC+AGG | + | chr6_1:97688069-97688088 | Msa0901250:CDS | 45.0% | |
| GGAACTTGTGGAAACTGATG+TGG | + | chr6_1:97688147-97688166 | Msa0901250:CDS | 45.0% | |
| CTTGTGGAAACTGATGTGGA+TGG | + | chr6_1:97688151-97688170 | Msa0901250:CDS | 45.0% | |
| ! | AGTAGAAAGATTGGTAGCCG+AGG | + | chr6_1:97688395-97688414 | Msa0901250:three_prime_UTR | 45.0% |
| GTAGAAGACGGATCGGAACA+AGG | - | chr6_1:97685130-97685149 | None:intergenic | 50.0% | |
| GTGTCGTGTATGTGCTACAG+AGG | - | chr6_1:97685625-97685644 | None:intergenic | 50.0% | |
| !!! | TTGTGGGGGTTATTTTGGGG+AGG | + | chr6_1:97685842-97685861 | Msa0901250:intron | 50.0% |
| !! | GGCTGTTGAGCCTTTTGAAG+TGG | + | chr6_1:97686239-97686258 | Msa0901250:intron | 50.0% |
| ACTCGCGTGCATCCAAACAA+TGG | + | chr6_1:97687018-97687037 | Msa0901250:exon | 50.0% | |
| GACGAGAGGACTGAAGTTCT+GGG | + | chr6_1:97687299-97687318 | Msa0901250:CDS | 50.0% | |
| CGATGTGAGGACTGAAGTTC+CGG | + | chr6_1:97687541-97687560 | Msa0901250:CDS | 50.0% | |
| GATGTGAGGACTGAAGTTCC+GGG | + | chr6_1:97687542-97687561 | Msa0901250:CDS | 50.0% | |
| CTAGGAATGGAGCAGACACA+TGG | + | chr6_1:97687599-97687618 | Msa0901250:CDS | 50.0% | |
| ! | TGGATGGGCCATAAAAGCAC+GGG | - | chr6_1:97687690-97687709 | None:intergenic | 50.0% |
| ACGAGCTCATCATCCTTCTC+GGG | - | chr6_1:97687986-97688005 | None:intergenic | 50.0% | |
| CACGAGCTCATCATCCTTCT+CGG | - | chr6_1:97687987-97688006 | None:intergenic | 50.0% | |
| GGATGATGAGCTCGTGTATG+AGG | + | chr6_1:97687991-97688010 | Msa0901250:CDS | 50.0% | |
| TCACAGCCGTAAGGAGCAAA+AGG | + | chr6_1:97688048-97688067 | Msa0901250:CDS | 50.0% | |
| TTGGTACAGAGCAAGGGATC+TGG | + | chr6_1:97688340-97688359 | Msa0901250:intron | 50.0% | |
| TGGTACAGAGCAAGGGATCT+GGG | + | chr6_1:97688341-97688360 | Msa0901250:intron | 50.0% | |
| TGCACGCGAGTCTGTCTGTA+GGG | - | chr6_1:97687009-97687028 | None:intergenic | 55.0% | |
| ATGCACGCGAGTCTGTCTGT+AGG | - | chr6_1:97687010-97687029 | None:intergenic | 55.0% | |
| GGACGAGAGGACTGAAGTTC+TGG | + | chr6_1:97687298-97687317 | Msa0901250:CDS | 55.0% | |
| TGGCCCATCCAATCCTTGCT+AGG | + | chr6_1:97687699-97687718 | Msa0901250:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 97685089 | 97688533 | 97685089 | ID=Msa0901250;Name=Msa0901250 |
| chr6_1 | mRNA | 97685089 | 97688533 | 97685089 | ID=Msa0901250-mRNA-1;Parent=Msa0901250;Name=Msa0901250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=100|1|1|1|0.5|0.2|5|193|277 |
| chr6_1 | exon | 97685089 | 97685165 | 97685089 | ID=Msa0901250-mRNA-1:exon:17148;Parent=Msa0901250-mRNA-1 |
| chr6_1 | exon | 97687014 | 97687078 | 97687014 | ID=Msa0901250-mRNA-1:exon:17149;Parent=Msa0901250-mRNA-1 |
| chr6_1 | exon | 97687290 | 97687382 | 97687290 | ID=Msa0901250-mRNA-1:exon:17150;Parent=Msa0901250-mRNA-1 |
| chr6_1 | exon | 97687494 | 97688200 | 97687494 | ID=Msa0901250-mRNA-1:exon:17151;Parent=Msa0901250-mRNA-1 |
| chr6_1 | exon | 97688349 | 97688533 | 97688349 | ID=Msa0901250-mRNA-1:exon:17152;Parent=Msa0901250-mRNA-1 |
| chr6_1 | five_prime_UTR | 97685089 | 97685165 | 97685089 | ID=Msa0901250-mRNA-1:five_prime_utr;Parent=Msa0901250-mRNA-1 |
| chr6_1 | five_prime_UTR | 97687014 | 97687036 | 97687014 | ID=Msa0901250-mRNA-1:five_prime_utr;Parent=Msa0901250-mRNA-1 |
| chr6_1 | CDS | 97687037 | 97687078 | 97687037 | ID=Msa0901250-mRNA-1:cds;Parent=Msa0901250-mRNA-1 |
| chr6_1 | CDS | 97687290 | 97687382 | 97687290 | ID=Msa0901250-mRNA-1:cds;Parent=Msa0901250-mRNA-1 |
| chr6_1 | CDS | 97687494 | 97688192 | 97687494 | ID=Msa0901250-mRNA-1:cds;Parent=Msa0901250-mRNA-1 |
| chr6_1 | three_prime_UTR | 97688193 | 97688200 | 97688193 | ID=Msa0901250-mRNA-1:three_prime_utr;Parent=Msa0901250-mRNA-1 |
| chr6_1 | three_prime_UTR | 97688349 | 97688533 | 97688349 | ID=Msa0901250-mRNA-1:three_prime_utr;Parent=Msa0901250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
