Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001790 | XP_039682730.1 | 71.348 | 178 | 12 | 2 | 73 | 250 | 16 | 154 | 5.23e-77 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001790 | sp|Q9CA59|NRP1_ARATH | 41.038 | 212 | 105 | 5 | 54 | 261 | 28 | 223 | 7.26e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001790 | A0A072UC75 | 71.348 | 178 | 12 | 2 | 73 | 250 | 16 | 154 | 2.50e-77 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0296250 | Msa1001790 | 0.802349 | 5.852699e-49 | -8.615850e-47 |
| Msa0901250 | Msa1001790 | 0.931001 | 7.188640e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001790 | MtrunA17_Chr6g0487501 | 71.348 | 178 | 12 | 2 | 73 | 250 | 16 | 154 | 4.81e-81 | 241 |
| Msa1001790 | MtrunA17_Chr6g0487501 | 100.000 | 31 | 0 | 0 | 1 | 31 | 1 | 31 | 5.16e-12 | 62.8 |
| Msa1001790 | MtrunA17_Chr3g0092521 | 40.670 | 209 | 108 | 4 | 54 | 261 | 26 | 219 | 1.93e-45 | 154 |
| Msa1001790 | MtrunA17_Chr4g0060621 | 40.191 | 209 | 109 | 4 | 54 | 261 | 23 | 216 | 2.10e-43 | 148 |
| Msa1001790 | MtrunA17_Chr6g0487861 | 67.470 | 83 | 27 | 0 | 91 | 173 | 3 | 85 | 4.57e-35 | 121 |
| Msa1001790 | MtrunA17_Chr6g0487691 | 67.470 | 83 | 27 | 0 | 91 | 173 | 3 | 85 | 4.57e-35 | 121 |
| Msa1001790 | MtrunA17_Chr4g0064221 | 28.358 | 268 | 150 | 12 | 32 | 277 | 89 | 336 | 3.39e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001790 | AT1G74560.1 | 41.038 | 212 | 105 | 5 | 54 | 261 | 28 | 223 | 7.38e-43 | 147 |
| Msa1001790 | AT1G74560.3 | 40.553 | 217 | 108 | 6 | 54 | 266 | 28 | 227 | 1.63e-41 | 144 |
| Msa1001790 | AT1G18800.1 | 39.906 | 213 | 106 | 6 | 54 | 261 | 24 | 219 | 7.56e-41 | 142 |
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATTCTCTTCAAATTCT+TGG | 0.214611 | 6_4:-85682370 | None:intergenic |
| AAAAGCACGGGACCAGAATT+TGG | 0.218919 | 6_4:-85683004 | None:intergenic |
| CTCACATCGCAGCTAAATTT+AGG | 0.226111 | 6_4:-85682694 | None:intergenic |
| AGGCTTGGATTATCAAAATA+TGG | 0.245878 | 6_4:-85683165 | None:intergenic |
| TCAAATCTATTCCCAAATTC+TGG | 0.268767 | 6_4:+85682992 | Msa1001790:CDS |
| ATCAAGTTGTGTAAAGTAAA+AGG | 0.285420 | 6_4:+85683508 | Msa1001790:exon |
| GGACGAGAGGACTGAAGTTC+TGG | 0.288671 | 6_4:+85682627 | Msa1001790:CDS |
| TCAAATTCTTGGCCATTGTT+TGG | 0.304186 | 6_4:-85682359 | None:intergenic |
| GGATGAGAGGACTAGAGTTC+TGG | 0.330041 | 6_4:+85682831 | Msa1001790:CDS |
| GATAACAGTGTTTATGTTGC+TGG | 0.343726 | 6_4:+85683838 | Msa1001790:three_prime_UTR |
| CGATGTGAGGACTGAAGTTC+CGG | 0.345020 | 6_4:+85682870 | Msa1001790:CDS |
| GGTGATTGAATAGCCTGATT+TGG | 0.366158 | 6_4:-85683124 | None:intergenic |
| GGAAATGAGGTTTCCTGATC+AGG | 0.366272 | 6_4:+85683398 | Msa1001790:CDS |
| TCCTTATACTGCTCTATTCC+CGG | 0.370204 | 6_4:-85682889 | None:intergenic |
| AAGATAAGAAGTAGAAAGAT+TGG | 0.378870 | 6_4:+85683715 | Msa1001790:three_prime_UTR |
| CTGCTTGGAGTTTCTTTAAG+TGG | 0.390052 | 6_4:+85683352 | Msa1001790:CDS |
| AGCAACATAAACACTGTTAT+CGG | 0.390196 | 6_4:-85683836 | None:intergenic |
| GATGACAGGACTGAAGTTCT+AGG | 0.390710 | 6_4:+85682910 | Msa1001790:CDS |
| GACAATCAAGATGCCAAATC+AGG | 0.392487 | 6_4:+85683111 | Msa1001790:CDS |
| ATCTTATTAAGAACAAACTT+TGG | 0.397752 | 6_4:+85683427 | Msa1001790:CDS |
| CACGAGCTCATCATCCTTCT+CGG | 0.403172 | 6_4:-85683313 | None:intergenic |
| GTAAGAGACTTTGCAAGGCT+TGG | 0.406140 | 6_4:-85683180 | None:intergenic |
| TCACATCGCAGCTAAATTTA+GGG | 0.408737 | 6_4:-85682693 | None:intergenic |
| TTGGTACAGAGCAAGGGATC+TGG | 0.408750 | 6_4:+85683669 | Msa1001790:intron |
| ATCGCTCTCAGGAACTTCAT+TGG | 0.412085 | 6_4:-85683271 | None:intergenic |
| AAAGCACGGGACCAGAATTT+GGG | 0.415546 | 6_4:-85683003 | None:intergenic |
| ATAAGATCAGCAACCTGATC+AGG | 0.416790 | 6_4:-85683411 | None:intergenic |
| GATGAGAGGACTAGAGTTCT+GGG | 0.438597 | 6_4:+85682832 | Msa1001790:CDS |
| TTCAATTGCCTAGCAAGGAT+TGG | 0.439915 | 6_4:-85683036 | None:intergenic |
| TCCGGGAATAGAGCAGTATA+AGG | 0.440676 | 6_4:+85682888 | Msa1001790:CDS |
| TACAACTATACAATGGAAAG+AGG | 0.440970 | 6_4:+85683236 | Msa1001790:CDS |
| GAGACTTACTTACAATGAAA+AGG | 0.451057 | 6_4:-85680482 | None:intergenic |
| TCCGTTCAAGTATTTACCTA+TGG | 0.460242 | 6_4:+85683455 | Msa1001790:CDS |
| TCGCTCTCAGGAACTTCATT+GGG | 0.466852 | 6_4:-85683270 | None:intergenic |
| GACGAGAGGACTGAAGTTCT+GGG | 0.483732 | 6_4:+85682628 | Msa1001790:CDS |
| TCATTGTCATCATCGCTCTC+AGG | 0.496020 | 6_4:-85683282 | None:intergenic |
| CTTCAACCTCAATAGAATTG+AGG | 0.501712 | 6_4:-85683089 | None:intergenic |
| TCACAGCCGTAAGGAGCAAA+AGG | 0.503154 | 6_4:+85683377 | Msa1001790:CDS |
| GGATGATGAGCTCGTGTATG+AGG | 0.507173 | 6_4:+85683320 | Msa1001790:CDS |
| GTATTTACCTATGGAACTTG+TGG | 0.508326 | 6_4:+85683464 | Msa1001790:CDS |
| TCGCAGCTAAATTTAGGGAT+AGG | 0.508667 | 6_4:-85682688 | None:intergenic |
| ATTGCCTAGCAAGGATTGGA+TGG | 0.511618 | 6_4:-85683032 | None:intergenic |
| TGGTACAGAGCAAGGGATCT+GGG | 0.516759 | 6_4:+85683670 | Msa1001790:intron |
| ATGAGGTGAAATTGACTGCT+TGG | 0.527582 | 6_4:+85683337 | Msa1001790:CDS |
| TAGAGCAGTATAAGGATGAC+AGG | 0.533449 | 6_4:+85682896 | Msa1001790:CDS |
| CCATGAAGGAAAACTAAAAG+AGG | 0.535511 | 6_4:+85683206 | Msa1001790:CDS |
| TGGCCCATCCAATCCTTGCT+AGG | 0.536542 | 6_4:+85683028 | Msa1001790:CDS |
| TCTTGTTCAATTGCCTAGCA+AGG | 0.536886 | 6_4:-85683041 | None:intergenic |
| AAGAGCTAATTGATAAGCGT+GGG | 0.545100 | 6_4:+85682962 | Msa1001790:CDS |
| AATCCAAGAGGAAATCGAAA+AGG | 0.547284 | 6_4:+85682386 | Msa1001790:CDS |
| AAGAGCTGTATGATAAGCAC+GGG | 0.548648 | 6_4:+85682653 | Msa1001790:CDS |
| GATGTGAGGACTGAAGTTCC+GGG | 0.551409 | 6_4:+85682871 | Msa1001790:CDS |
| TGAGTACCTCAATTCTATTG+AGG | 0.552670 | 6_4:+85683083 | Msa1001790:CDS |
| AGGAAAACTAAAAGAGGCTA+AGG | 0.553453 | 6_4:+85683212 | Msa1001790:CDS |
| GTAGAAGACGGATCGGAACA+AGG | 0.554185 | 6_4:-85680457 | None:intergenic |
| TCAGTTTCCACAAGTTCCAT+AGG | 0.555746 | 6_4:-85683471 | None:intergenic |
| ACGAGCTCATCATCCTTCTC+GGG | 0.555922 | 6_4:-85683312 | None:intergenic |
| CAATGAAGTTTGTCCCGAGA+AGG | 0.561166 | 6_4:+85683299 | Msa1001790:CDS |
| TGCTAGGCAATTGAACAAGA+AGG | 0.571727 | 6_4:+85683044 | Msa1001790:CDS |
| TTTAGATGTATAAGGATGAG+AGG | 0.573044 | 6_4:+85682818 | Msa1001790:intron |
| CAGGACTGAAGTTCTAGGAA+TGG | 0.582592 | 6_4:+85682915 | Msa1001790:CDS |
| TAAGTGGTTTCACAGCCGTA+AGG | 0.587536 | 6_4:+85683368 | Msa1001790:CDS |
| GGAACTTGTGGAAACTGATG+TGG | 0.588216 | 6_4:+85683476 | Msa1001790:CDS |
| AAAGAGCTAATTGATAAGCG+TGG | 0.591093 | 6_4:+85682961 | Msa1001790:CDS |
| AAGTCTCTTACCTTCCATGA+AGG | 0.591877 | 6_4:+85683192 | Msa1001790:CDS |
| TCCATAGGTAAATACTTGAA+CGG | 0.602061 | 6_4:-85683456 | None:intergenic |
| AAAGAGCTGTATGATAAGCA+CGG | 0.607491 | 6_4:+85682652 | Msa1001790:CDS |
| CTAAGGCTACAACTATACAA+TGG | 0.610324 | 6_4:+85683229 | Msa1001790:CDS |
| AAAGGAAGTAGAAGACGGAT+CGG | 0.612397 | 6_4:-85680464 | None:intergenic |
| GTAAGGAGCAAAAGGAAATG+AGG | 0.614553 | 6_4:+85683385 | Msa1001790:CDS |
| TTGCCTAGCAAGGATTGGAT+GGG | 0.614584 | 6_4:-85683031 | None:intergenic |
| AGTAGAAAGATTGGTAGCCG+AGG | 0.620924 | 6_4:+85683724 | Msa1001790:three_prime_UTR |
| TTGGATGGGCCATAAAAGCA+CGG | 0.620974 | 6_4:-85683017 | None:intergenic |
| TGGATGGGCCATAAAAGCAC+GGG | 0.623296 | 6_4:-85683016 | None:intergenic |
| GGAAGGTAAGAGACTTTGCA+AGG | 0.625436 | 6_4:-85683185 | None:intergenic |
| CTTCAACTAATAAAAGACCT+CGG | 0.626591 | 6_4:-85683741 | None:intergenic |
| AATGAAAAGGAAGTAGAAGA+CGG | 0.632339 | 6_4:-85680469 | None:intergenic |
| ACAACTATACAATGGAAAGA+GGG | 0.633519 | 6_4:+85683237 | Msa1001790:CDS |
| CTAGGAATGGAGCAGACACA+TGG | 0.633573 | 6_4:+85682928 | Msa1001790:CDS |
| CTTAGATGTACAAGGACGAG+AGG | 0.649578 | 6_4:+85682614 | Msa1001790:intron |
| GGTACTCATCAAATATCTCA+CGG | 0.650801 | 6_4:-85683068 | None:intergenic |
| ACTCGCGTGCATCCAAACAA+TGG | 0.663758 | 6_4:+85682347 | Msa1001790:exon |
| TAGAGCAGTATATCGATGTG+AGG | 0.674809 | 6_4:+85682857 | Msa1001790:CDS |
| GAATTTGAAGAGAATCCAAG+AGG | 0.678270 | 6_4:+85682374 | Msa1001790:CDS |
| CTTGTGGAAACTGATGTGGA+TGG | 0.685370 | 6_4:+85683480 | Msa1001790:CDS |
| ACTATGATCTTAGATGTACA+AGG | 0.687750 | 6_4:+85682606 | Msa1001790:intron |
| AGAGCTAATTGATAAGCGTG+GGG | 0.696262 | 6_4:+85682963 | Msa1001790:CDS |
| AGAGCTGTATGATAAGCACG+GGG | 0.790780 | 6_4:+85682654 | Msa1001790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTTTACTTTAAATATT+TGG | - | chr6_4:85681951-85681970 | None:intergenic | 10.0% |
| !! | AAAAGAATATTATTAAGAAT+TGG | + | chr6_4:85682250-85682269 | Msa1001790:intron | 10.0% |
| !!! | ATTATAATTTTAGATGTATA+AGG | + | chr6_4:85682810-85682829 | Msa1001790:intron | 10.0% |
| !!! | AAAGTTTAATTTGATTTTAT+TGG | + | chr6_4:85683650-85683669 | Msa1001790:intron | 10.0% |
| !!! | TTTTATTAGTTGAAGATAAA+AGG | + | chr6_4:85683749-85683768 | Msa1001790:three_prime_UTR | 15.0% |
| !!! | TAAGTTTTGAGAGAATATTT+GGG | - | chr6_4:85680789-85680808 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGAGAGAATATT+TGG | - | chr6_4:85680790-85680809 | None:intergenic | 20.0% |
| !!! | TATTTCTAGTGTGTAATTTA+TGG | + | chr6_4:85680898-85680917 | Msa1001790:intron | 20.0% |
| !! | GTGTAATTTATGTTTATGTT+TGG | + | chr6_4:85681112-85681131 | Msa1001790:intron | 20.0% |
| !! | TAACAAAGAAATTGATCTAA+AGG | - | chr6_4:85681262-85681281 | None:intergenic | 20.0% |
| !!! | ATCAATTTCTTTGTTATTTG+AGG | + | chr6_4:85681266-85681285 | Msa1001790:intron | 20.0% |
| !! | TAAAACTCAAAATCACAAAT+TGG | - | chr6_4:85681405-85681424 | None:intergenic | 20.0% |
| !!! | ATTTGTGATTTTGAGTTTTA+TGG | + | chr6_4:85681405-85681424 | Msa1001790:intron | 20.0% |
| !!! | TGATTTTTGTGTACATATTT+CGG | - | chr6_4:85681525-85681544 | None:intergenic | 20.0% |
| !! | AAATATGTACACAAAAATCA+AGG | + | chr6_4:85681525-85681544 | Msa1001790:intron | 20.0% |
| !!! | GTAACTTTTCATAAGAATTT+TGG | + | chr6_4:85681547-85681566 | Msa1001790:intron | 20.0% |
| !! | TATAATACATTGTTAGACAA+AGG | + | chr6_4:85681885-85681904 | Msa1001790:intron | 20.0% |
| !! | CTAATTAAGCAAAAAACTAT+TGG | - | chr6_4:85682155-85682174 | None:intergenic | 20.0% |
| !! | TATTGAACTAAATATGTGAT+AGG | + | chr6_4:85682224-85682243 | Msa1001790:intron | 20.0% |
| !! | TTACCATAAAGGAAAAATTA+GGG | - | chr6_4:85682315-85682334 | None:intergenic | 20.0% |
| !! | AAAAATAAAATGCGTGAAAT+TGG | - | chr6_4:85682415-85682434 | None:intergenic | 20.0% |
| !! | ATCTTATTAAGAACAAACTT+TGG | + | chr6_4:85683427-85683446 | Msa1001790:CDS | 20.0% |
| !!! | AATTTGTAGTAAAGTATTGA+AGG | + | chr6_4:85683591-85683610 | Msa1001790:intron | 20.0% |
| ! | AAATTACACACTAGTTAGTA+AGG | - | chr6_4:85680703-85680722 | None:intergenic | 25.0% |
| ! | ATGACTAACATGTTGAAAAA+AGG | + | chr6_4:85680727-85680746 | Msa1001790:intron | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | + | chr6_4:85680818-85680837 | Msa1001790:intron | 25.0% |
| ! | TAACAACAATTGAAGTCTTA+GGG | - | chr6_4:85680844-85680863 | None:intergenic | 25.0% |
| !! | TGATTTTGTCAAGTTATTAC+CGG | + | chr6_4:85681001-85681020 | Msa1001790:intron | 25.0% |
| !!! | TTCTTTGTTATTTGAGGATT+AGG | + | chr6_4:85681272-85681291 | Msa1001790:intron | 25.0% |
| !!! | TCTTTGTTATTTGAGGATTA+GGG | + | chr6_4:85681273-85681292 | Msa1001790:intron | 25.0% |
| ! | CATTAAAATAGACAATTCAG+AGG | - | chr6_4:85681306-85681325 | None:intergenic | 25.0% |
| ! | AACAAGAAAAACACAATTTG+CGG | - | chr6_4:85681467-85681486 | None:intergenic | 25.0% |
| ! | TGCGATTATTTATATGGTTT+AGG | + | chr6_4:85681739-85681758 | Msa1001790:intron | 25.0% |
| ! | TTATTTATATGGTTTAGGTG+TGG | + | chr6_4:85681744-85681763 | Msa1001790:intron | 25.0% |
| !!! | TTAAAAGCAGATTAGTCTTA+AGG | + | chr6_4:85681910-85681929 | Msa1001790:intron | 25.0% |
| ! | GAAAATTGGAAACTTTCAAT+TGG | - | chr6_4:85682009-85682028 | None:intergenic | 25.0% |
| !! | TGGAGAAAGTATATAAATCT+AGG | - | chr6_4:85682096-85682115 | None:intergenic | 25.0% |
| ! | AGGTAAAACACGTTTATATA+TGG | - | chr6_4:85682276-85682295 | None:intergenic | 25.0% |
| ! | GTTACCATAAAGGAAAAATT+AGG | - | chr6_4:85682316-85682335 | None:intergenic | 25.0% |
| ! | GTTAATTATTTAGTTGTGTC+GGG | - | chr6_4:85682496-85682515 | None:intergenic | 25.0% |
| ! | GGTTAATTATTTAGTTGTGT+CGG | - | chr6_4:85682497-85682516 | None:intergenic | 25.0% |
| !! | TGGATTTTCATCAAAGTTAA+AGG | - | chr6_4:85683148-85683167 | None:intergenic | 25.0% |
| !! | ATCAAGTTGTGTAAAGTAAA+AGG | + | chr6_4:85683508-85683527 | Msa1001790:exon | 25.0% |
| ! | AAGATAAGAAGTAGAAAGAT+TGG | + | chr6_4:85683715-85683734 | Msa1001790:three_prime_UTR | 25.0% |
| !!! | CTTTTTAAGTGTTGAATCTT+CGG | + | chr6_4:85683806-85683825 | Msa1001790:three_prime_UTR | 25.0% |
| ! | ACTGTGAGAGAAAAAGTTTT+CGG | - | chr6_4:85680431-85680450 | None:intergenic | 30.0% |
| AATGAAAAGGAAGTAGAAGA+CGG | - | chr6_4:85680472-85680491 | None:intergenic | 30.0% | |
| GAGACTTACTTACAATGAAA+AGG | - | chr6_4:85680485-85680504 | None:intergenic | 30.0% | |
| ! | ATAGTCTGGAGTTGAATTTA+GGG | - | chr6_4:85680513-85680532 | None:intergenic | 30.0% |
| AATGCAAGTCAATTCATCTT+TGG | - | chr6_4:85680665-85680684 | None:intergenic | 30.0% | |
| !! | ATGAATTGACTTGCATTGTA+TGG | + | chr6_4:85680668-85680687 | Msa1001790:intron | 30.0% |
| CTAACAACAATTGAAGTCTT+AGG | - | chr6_4:85680845-85680864 | None:intergenic | 30.0% | |
| GAGTATATAGTTGTTACTAG+AGG | - | chr6_4:85680872-85680891 | None:intergenic | 30.0% | |
| !!! | ACAATTAAACGCGTTTTTTG+CGG | - | chr6_4:85681149-85681168 | None:intergenic | 30.0% |
| AACGCGTTTAATTGTATTTG+TGG | + | chr6_4:85681154-85681173 | Msa1001790:intron | 30.0% | |
| ACGCGTTTAATTGTATTTGT+GGG | + | chr6_4:85681155-85681174 | Msa1001790:intron | 30.0% | |
| TTTACAAAATCCACGCAAAT+TGG | + | chr6_4:85681195-85681214 | Msa1001790:intron | 30.0% | |
| TTACAAAATCCACGCAAATT+GGG | + | chr6_4:85681196-85681215 | Msa1001790:intron | 30.0% | |
| !! | TAGCTGTTACTTTGACAAAT+TGG | - | chr6_4:85681237-85681256 | None:intergenic | 30.0% |
| TCACAACTTAGTGTGATTAA+GGG | - | chr6_4:85681337-85681356 | None:intergenic | 30.0% | |
| ATCACAACTTAGTGTGATTA+AGG | - | chr6_4:85681338-85681357 | None:intergenic | 30.0% | |
| ! | ATCACACTAAGTTGTGATTT+TGG | + | chr6_4:85681340-85681359 | Msa1001790:intron | 30.0% |
| ! | TCACACTAAGTTGTGATTTT+GGG | + | chr6_4:85681341-85681360 | Msa1001790:intron | 30.0% |
| !! | AAGTTGTGATTTTGGGTATT+AGG | + | chr6_4:85681348-85681367 | Msa1001790:intron | 30.0% |
| !! | AGTTGTGATTTTGGGTATTA+GGG | + | chr6_4:85681349-85681368 | Msa1001790:intron | 30.0% |
| TATTAGGGTTTCTAATTTGG+AGG | + | chr6_4:85681364-85681383 | Msa1001790:intron | 30.0% | |
| TGCAAATTAACCACTTCAAA+AGG | - | chr6_4:85681581-85681600 | None:intergenic | 30.0% | |
| GAAGCATGCGATTATTTATA+TGG | + | chr6_4:85681733-85681752 | Msa1001790:intron | 30.0% | |
| AAGTTACAAAAGCTCAAGTT+TGG | + | chr6_4:85681968-85681987 | Msa1001790:intron | 30.0% | |
| ! | GTTTCCAATTTTCATCTTTG+TGG | + | chr6_4:85682016-85682035 | Msa1001790:intron | 30.0% |
| ACAAGTGCACATAAAATACA+AGG | - | chr6_4:85682061-85682080 | None:intergenic | 30.0% | |
| ! | ACACCCTAATTTTTCCTTTA+TGG | + | chr6_4:85682309-85682328 | Msa1001790:intron | 30.0% |
| TTGGATTCTCTTCAAATTCT+TGG | - | chr6_4:85682373-85682392 | None:intergenic | 30.0% | |
| ! | AAAAACGAGAGGTAGATTTT+TGG | - | chr6_4:85682518-85682537 | None:intergenic | 30.0% |
| ACTATGATCTTAGATGTACA+AGG | + | chr6_4:85682606-85682625 | Msa1001790:intron | 30.0% | |
| TCACTTAACACATAAACAAG+AGG | - | chr6_4:85682733-85682752 | None:intergenic | 30.0% | |
| TTTAGATGTATAAGGATGAG+AGG | + | chr6_4:85682818-85682837 | Msa1001790:intron | 30.0% | |
| TCAAATCTATTCCCAAATTC+TGG | + | chr6_4:85682992-85683011 | Msa1001790:CDS | 30.0% | |
| AGGCTTGGATTATCAAAATA+TGG | - | chr6_4:85683168-85683187 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTTTCCTTCATGGA+AGG | - | chr6_4:85683205-85683224 | None:intergenic | 30.0% |
| TACAACTATACAATGGAAAG+AGG | + | chr6_4:85683236-85683255 | Msa1001790:CDS | 30.0% | |
| ACAACTATACAATGGAAAGA+GGG | + | chr6_4:85683237-85683256 | Msa1001790:CDS | 30.0% | |
| TCCATAGGTAAATACTTGAA+CGG | - | chr6_4:85683459-85683478 | None:intergenic | 30.0% | |
| !! | AGTATTGAAGGCTAACTTTT+TGG | + | chr6_4:85683603-85683622 | Msa1001790:intron | 30.0% |
| ! | ATTTTATTGGTACAGAGCAA+GGG | + | chr6_4:85683663-85683682 | Msa1001790:intron | 30.0% |
| CTTCAACTAATAAAAGACCT+CGG | - | chr6_4:85683744-85683763 | None:intergenic | 30.0% | |
| AGCAACATAAACACTGTTAT+CGG | - | chr6_4:85683839-85683858 | None:intergenic | 30.0% | |
| ! | CATAGTCTGGAGTTGAATTT+AGG | - | chr6_4:85680514-85680533 | None:intergenic | 35.0% |
| !! | CTCTCATAAGCCATTTTCAT+TGG | + | chr6_4:85680759-85680778 | Msa1001790:intron | 35.0% |
| TTTGGGAGAACCAATGAAAA+TGG | - | chr6_4:85680772-85680791 | None:intergenic | 35.0% | |
| CGCGTTTAATTGTATTTGTG+GGG | + | chr6_4:85681156-85681175 | Msa1001790:intron | 35.0% | |
| GCGTTTAATTGTATTTGTGG+GGG | + | chr6_4:85681157-85681176 | Msa1001790:intron | 35.0% | |
| ! | TGTATTTGTGGGGGTTATTT+TGG | + | chr6_4:85681166-85681185 | Msa1001790:intron | 35.0% |
| !! | GTATTTGTGGGGGTTATTTT+GGG | + | chr6_4:85681167-85681186 | Msa1001790:intron | 35.0% |
| !! | TATTTGTGGGGGTTATTTTG+GGG | + | chr6_4:85681168-85681187 | Msa1001790:intron | 35.0% |
| ! | ACTTTTTAACCCAATTTGCG+TGG | - | chr6_4:85681208-85681227 | None:intergenic | 35.0% |
| GGGTATTAGGGTTTCTAATT+TGG | + | chr6_4:85681361-85681380 | Msa1001790:intron | 35.0% | |
| ! | CAAACATTGATTAGTGCAGA+AGG | - | chr6_4:85681673-85681692 | None:intergenic | 35.0% |
| CAAGATTGTACACACTAGTA+GGG | - | chr6_4:85681798-85681817 | None:intergenic | 35.0% | |
| ACAAGATTGTACACACTAGT+AGG | - | chr6_4:85681799-85681818 | None:intergenic | 35.0% | |
| GTCTTAAGGTTTGACATGTA+TGG | + | chr6_4:85681924-85681943 | Msa1001790:intron | 35.0% | |
| AGCTCCACAAAGATGAAAAT+TGG | - | chr6_4:85682023-85682042 | None:intergenic | 35.0% | |
| GCTTAATTAGTTAGCGTTGT+TGG | + | chr6_4:85682165-85682184 | Msa1001790:intron | 35.0% | |
| TCAAATTCTTGGCCATTGTT+TGG | - | chr6_4:85682362-85682381 | None:intergenic | 35.0% | |
| GAATTTGAAGAGAATCCAAG+AGG | + | chr6_4:85682374-85682393 | Msa1001790:CDS | 35.0% | |
| AATCCAAGAGGAAATCGAAA+AGG | + | chr6_4:85682386-85682405 | Msa1001790:CDS | 35.0% | |
| ! | ATACCTTTTCGATTTCCTCT+TGG | - | chr6_4:85682392-85682411 | None:intergenic | 35.0% |
| TCAGATAACACAAAAACGAG+AGG | - | chr6_4:85682529-85682548 | None:intergenic | 35.0% | |
| AAAGAGCTGTATGATAAGCA+CGG | + | chr6_4:85682652-85682671 | Msa1001790:CDS | 35.0% | |
| TCACATCGCAGCTAAATTTA+GGG | - | chr6_4:85682696-85682715 | None:intergenic | 35.0% | |
| AAAGAGCTAATTGATAAGCG+TGG | + | chr6_4:85682961-85682980 | Msa1001790:CDS | 35.0% | |
| AAGAGCTAATTGATAAGCGT+GGG | + | chr6_4:85682962-85682981 | Msa1001790:CDS | 35.0% | |
| GGTACTCATCAAATATCTCA+CGG | - | chr6_4:85683071-85683090 | None:intergenic | 35.0% | |
| TGAGTACCTCAATTCTATTG+AGG | + | chr6_4:85683083-85683102 | Msa1001790:CDS | 35.0% | |
| CTTCAACCTCAATAGAATTG+AGG | - | chr6_4:85683092-85683111 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTAGTTTTCCTTCA+TGG | - | chr6_4:85683209-85683228 | None:intergenic | 35.0% |
| CCATGAAGGAAAACTAAAAG+AGG | + | chr6_4:85683206-85683225 | Msa1001790:CDS | 35.0% | |
| AGGAAAACTAAAAGAGGCTA+AGG | + | chr6_4:85683212-85683231 | Msa1001790:CDS | 35.0% | |
| CTAAGGCTACAACTATACAA+TGG | + | chr6_4:85683229-85683248 | Msa1001790:CDS | 35.0% | |
| ! | TCATTTCCTTTTGCTCCTTA+CGG | - | chr6_4:85683386-85683405 | None:intergenic | 35.0% |
| TCCGTTCAAGTATTTACCTA+TGG | + | chr6_4:85683455-85683474 | Msa1001790:CDS | 35.0% | |
| GTATTTACCTATGGAACTTG+TGG | + | chr6_4:85683464-85683483 | Msa1001790:CDS | 35.0% | |
| !!! | TGAAGGCTAACTTTTTGGTT+TGG | + | chr6_4:85683608-85683627 | Msa1001790:intron | 35.0% |
| ! | GATTTTATTGGTACAGAGCA+AGG | + | chr6_4:85683662-85683681 | Msa1001790:intron | 35.0% |
| GATAACAGTGTTTATGTTGC+TGG | + | chr6_4:85683838-85683857 | Msa1001790:three_prime_UTR | 35.0% | |
| ! | GAAAAAGTTTTCGGAGAGAG+CGG | - | chr6_4:85680422-85680441 | None:intergenic | 40.0% |
| AAAGGAAGTAGAAGACGGAT+CGG | - | chr6_4:85680467-85680486 | None:intergenic | 40.0% | |
| GAAGGCAACAAATCATAGTC+TGG | - | chr6_4:85680527-85680546 | None:intergenic | 40.0% | |
| ! | TGCCTTCATTTGTTAGTGCT+TGG | + | chr6_4:85680540-85680559 | Msa1001790:intron | 40.0% |
| ! | GCCTTCATTTGTTAGTGCTT+GGG | + | chr6_4:85680541-85680560 | Msa1001790:intron | 40.0% |
| ACCCAAGCACTAACAAATGA+AGG | - | chr6_4:85680545-85680564 | None:intergenic | 40.0% | |
| !!! | ATTACCGGTTTTGACGTGTT+TGG | + | chr6_4:85681016-85681035 | Msa1001790:intron | 40.0% |
| ! | AATTACACGCTAGTTTGCGA+GGG | - | chr6_4:85681100-85681119 | None:intergenic | 40.0% |
| ! | AAATTACACGCTAGTTTGCG+AGG | - | chr6_4:85681101-85681120 | None:intergenic | 40.0% |
| TTCTTATGTCTCATGGCAAC+GGG | - | chr6_4:85681716-85681735 | None:intergenic | 40.0% | |
| CTTCTTATGTCTCATGGCAA+CGG | - | chr6_4:85681717-85681736 | None:intergenic | 40.0% | |
| GTTCAGTTATGTAGCACACA+TGG | - | chr6_4:85682116-85682135 | None:intergenic | 40.0% | |
| TGTCTGTAGGGTTACCATAA+AGG | - | chr6_4:85682326-85682345 | None:intergenic | 40.0% | |
| ATTTAGTTGTGTCGGGTCTT+AGG | - | chr6_4:85682489-85682508 | None:intergenic | 40.0% | |
| AAGAGCTGTATGATAAGCAC+GGG | + | chr6_4:85682653-85682672 | Msa1001790:CDS | 40.0% | |
| TCGCAGCTAAATTTAGGGAT+AGG | - | chr6_4:85682691-85682710 | None:intergenic | 40.0% | |
| CTCACATCGCAGCTAAATTT+AGG | - | chr6_4:85682697-85682716 | None:intergenic | 40.0% | |
| TAGAGCAGTATATCGATGTG+AGG | + | chr6_4:85682857-85682876 | Msa1001790:CDS | 40.0% | |
| TCCTTATACTGCTCTATTCC+CGG | - | chr6_4:85682892-85682911 | None:intergenic | 40.0% | |
| TAGAGCAGTATAAGGATGAC+AGG | + | chr6_4:85682896-85682915 | Msa1001790:CDS | 40.0% | |
| AGAGCTAATTGATAAGCGTG+GGG | + | chr6_4:85682963-85682982 | Msa1001790:CDS | 40.0% | |
| TTCAATTGCCTAGCAAGGAT+TGG | - | chr6_4:85683039-85683058 | None:intergenic | 40.0% | |
| TCTTGTTCAATTGCCTAGCA+AGG | - | chr6_4:85683044-85683063 | None:intergenic | 40.0% | |
| TGCTAGGCAATTGAACAAGA+AGG | + | chr6_4:85683044-85683063 | Msa1001790:CDS | 40.0% | |
| GACAATCAAGATGCCAAATC+AGG | + | chr6_4:85683111-85683130 | Msa1001790:CDS | 40.0% | |
| GGTGATTGAATAGCCTGATT+TGG | - | chr6_4:85683127-85683146 | None:intergenic | 40.0% | |
| AAGTCTCTTACCTTCCATGA+AGG | + | chr6_4:85683192-85683211 | Msa1001790:CDS | 40.0% | |
| ATGAGGTGAAATTGACTGCT+TGG | + | chr6_4:85683337-85683356 | Msa1001790:CDS | 40.0% | |
| CTGCTTGGAGTTTCTTTAAG+TGG | + | chr6_4:85683352-85683371 | Msa1001790:CDS | 40.0% | |
| GTAAGGAGCAAAAGGAAATG+AGG | + | chr6_4:85683385-85683404 | Msa1001790:CDS | 40.0% | |
| ATAAGATCAGCAACCTGATC+AGG | - | chr6_4:85683414-85683433 | None:intergenic | 40.0% | |
| TCAGTTTCCACAAGTTCCAT+AGG | - | chr6_4:85683474-85683493 | None:intergenic | 40.0% | |
| TGTCGTGTATGTGCTACAGA+GGG | - | chr6_4:85680954-85680973 | None:intergenic | 45.0% | |
| GACACCAAACACGTCAAAAC+CGG | - | chr6_4:85681023-85681042 | None:intergenic | 45.0% | |
| CGCATGCTTCTTATGTCTCA+TGG | - | chr6_4:85681723-85681742 | None:intergenic | 45.0% | |
| !! | AGGGTGTTTCGATTTTGTCG+AGG | - | chr6_4:85682296-85682315 | None:intergenic | 45.0% |
| CTTAGATGTACAAGGACGAG+AGG | + | chr6_4:85682614-85682633 | Msa1001790:intron | 45.0% | |
| AGAGCTGTATGATAAGCACG+GGG | + | chr6_4:85682654-85682673 | Msa1001790:CDS | 45.0% | |
| GATGAGAGGACTAGAGTTCT+GGG | + | chr6_4:85682832-85682851 | Msa1001790:CDS | 45.0% | |
| TCCGGGAATAGAGCAGTATA+AGG | + | chr6_4:85682888-85682907 | Msa1001790:CDS | 45.0% | |
| GATGACAGGACTGAAGTTCT+AGG | + | chr6_4:85682910-85682929 | Msa1001790:CDS | 45.0% | |
| !! | CAGGACTGAAGTTCTAGGAA+TGG | + | chr6_4:85682915-85682934 | Msa1001790:CDS | 45.0% |
| AAAGCACGGGACCAGAATTT+GGG | - | chr6_4:85683006-85683025 | None:intergenic | 45.0% | |
| ! | AAAAGCACGGGACCAGAATT+TGG | - | chr6_4:85683007-85683026 | None:intergenic | 45.0% |
| ! | ATTCTGGTCCCGTGCTTTTA+TGG | + | chr6_4:85683008-85683027 | Msa1001790:CDS | 45.0% |
| TTGGATGGGCCATAAAAGCA+CGG | - | chr6_4:85683020-85683039 | None:intergenic | 45.0% | |
| TTGCCTAGCAAGGATTGGAT+GGG | - | chr6_4:85683034-85683053 | None:intergenic | 45.0% | |
| ATTGCCTAGCAAGGATTGGA+TGG | - | chr6_4:85683035-85683054 | None:intergenic | 45.0% | |
| GTAAGAGACTTTGCAAGGCT+TGG | - | chr6_4:85683183-85683202 | None:intergenic | 45.0% | |
| GGAAGGTAAGAGACTTTGCA+AGG | - | chr6_4:85683188-85683207 | None:intergenic | 45.0% | |
| TCGCTCTCAGGAACTTCATT+GGG | - | chr6_4:85683273-85683292 | None:intergenic | 45.0% | |
| ATCGCTCTCAGGAACTTCAT+TGG | - | chr6_4:85683274-85683293 | None:intergenic | 45.0% | |
| TCATTGTCATCATCGCTCTC+AGG | - | chr6_4:85683285-85683304 | None:intergenic | 45.0% | |
| CAATGAAGTTTGTCCCGAGA+AGG | + | chr6_4:85683299-85683318 | Msa1001790:CDS | 45.0% | |
| TAAGTGGTTTCACAGCCGTA+AGG | + | chr6_4:85683368-85683387 | Msa1001790:CDS | 45.0% | |
| GGAAATGAGGTTTCCTGATC+AGG | + | chr6_4:85683398-85683417 | Msa1001790:CDS | 45.0% | |
| GGAACTTGTGGAAACTGATG+TGG | + | chr6_4:85683476-85683495 | Msa1001790:CDS | 45.0% | |
| CTTGTGGAAACTGATGTGGA+TGG | + | chr6_4:85683480-85683499 | Msa1001790:CDS | 45.0% | |
| ! | AGTAGAAAGATTGGTAGCCG+AGG | + | chr6_4:85683724-85683743 | Msa1001790:three_prime_UTR | 45.0% |
| GTAGAAGACGGATCGGAACA+AGG | - | chr6_4:85680460-85680479 | None:intergenic | 50.0% | |
| GTGTCGTGTATGTGCTACAG+AGG | - | chr6_4:85680955-85680974 | None:intergenic | 50.0% | |
| !!! | TTGTGGGGGTTATTTTGGGG+AGG | + | chr6_4:85681171-85681190 | Msa1001790:intron | 50.0% |
| !! | GGCTGTTGAGCCTTTTGAAG+TGG | + | chr6_4:85681568-85681587 | Msa1001790:intron | 50.0% |
| ACTCGCGTGCATCCAAACAA+TGG | + | chr6_4:85682347-85682366 | Msa1001790:exon | 50.0% | |
| GACGAGAGGACTGAAGTTCT+GGG | + | chr6_4:85682628-85682647 | Msa1001790:CDS | 50.0% | |
| GGATGAGAGGACTAGAGTTC+TGG | + | chr6_4:85682831-85682850 | Msa1001790:CDS | 50.0% | |
| CGATGTGAGGACTGAAGTTC+CGG | + | chr6_4:85682870-85682889 | Msa1001790:CDS | 50.0% | |
| GATGTGAGGACTGAAGTTCC+GGG | + | chr6_4:85682871-85682890 | Msa1001790:CDS | 50.0% | |
| CTAGGAATGGAGCAGACACA+TGG | + | chr6_4:85682928-85682947 | Msa1001790:CDS | 50.0% | |
| ! | TGGATGGGCCATAAAAGCAC+GGG | - | chr6_4:85683019-85683038 | None:intergenic | 50.0% |
| ACGAGCTCATCATCCTTCTC+GGG | - | chr6_4:85683315-85683334 | None:intergenic | 50.0% | |
| CACGAGCTCATCATCCTTCT+CGG | - | chr6_4:85683316-85683335 | None:intergenic | 50.0% | |
| GGATGATGAGCTCGTGTATG+AGG | + | chr6_4:85683320-85683339 | Msa1001790:CDS | 50.0% | |
| TCACAGCCGTAAGGAGCAAA+AGG | + | chr6_4:85683377-85683396 | Msa1001790:CDS | 50.0% | |
| TTGGTACAGAGCAAGGGATC+TGG | + | chr6_4:85683669-85683688 | Msa1001790:intron | 50.0% | |
| TGGTACAGAGCAAGGGATCT+GGG | + | chr6_4:85683670-85683689 | Msa1001790:intron | 50.0% | |
| TGCACGCGAGTCTGTCTGTA+GGG | - | chr6_4:85682338-85682357 | None:intergenic | 55.0% | |
| ATGCACGCGAGTCTGTCTGT+AGG | - | chr6_4:85682339-85682358 | None:intergenic | 55.0% | |
| GGACGAGAGGACTGAAGTTC+TGG | + | chr6_4:85682627-85682646 | Msa1001790:CDS | 55.0% | |
| TGGCCCATCCAATCCTTGCT+AGG | + | chr6_4:85683028-85683047 | Msa1001790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85680419 | 85683862 | 85680419 | ID=Msa1001790;Name=Msa1001790 |
| chr6_4 | mRNA | 85680419 | 85683862 | 85680419 | ID=Msa1001790-mRNA-1;Parent=Msa1001790;Name=Msa1001790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=100|1|1|1|0.5|0.2|5|193|277 |
| chr6_4 | exon | 85680419 | 85680495 | 85680419 | ID=Msa1001790-mRNA-1:exon:16842;Parent=Msa1001790-mRNA-1 |
| chr6_4 | exon | 85682343 | 85682407 | 85682343 | ID=Msa1001790-mRNA-1:exon:16843;Parent=Msa1001790-mRNA-1 |
| chr6_4 | exon | 85682619 | 85682711 | 85682619 | ID=Msa1001790-mRNA-1:exon:16844;Parent=Msa1001790-mRNA-1 |
| chr6_4 | exon | 85682823 | 85683529 | 85682823 | ID=Msa1001790-mRNA-1:exon:16845;Parent=Msa1001790-mRNA-1 |
| chr6_4 | exon | 85683678 | 85683862 | 85683678 | ID=Msa1001790-mRNA-1:exon:16846;Parent=Msa1001790-mRNA-1 |
| chr6_4 | five_prime_UTR | 85680419 | 85680495 | 85680419 | ID=Msa1001790-mRNA-1:five_prime_utr;Parent=Msa1001790-mRNA-1 |
| chr6_4 | five_prime_UTR | 85682343 | 85682365 | 85682343 | ID=Msa1001790-mRNA-1:five_prime_utr;Parent=Msa1001790-mRNA-1 |
| chr6_4 | CDS | 85682366 | 85682407 | 85682366 | ID=Msa1001790-mRNA-1:cds;Parent=Msa1001790-mRNA-1 |
| chr6_4 | CDS | 85682619 | 85682711 | 85682619 | ID=Msa1001790-mRNA-1:cds;Parent=Msa1001790-mRNA-1 |
| chr6_4 | CDS | 85682823 | 85683521 | 85682823 | ID=Msa1001790-mRNA-1:cds;Parent=Msa1001790-mRNA-1 |
| chr6_4 | three_prime_UTR | 85683522 | 85683529 | 85683522 | ID=Msa1001790-mRNA-1:three_prime_utr;Parent=Msa1001790-mRNA-1 |
| chr6_4 | three_prime_UTR | 85683678 | 85683862 | 85683678 | ID=Msa1001790-mRNA-1:three_prime_utr;Parent=Msa1001790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
