AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901650 MtrunA17_Chr6g0488511 97.360 303 8 0 1 303 1 303 0.0 616
Msa0901650 MtrunA17_Chr2g0289341 49.175 303 141 5 3 296 4 302 3.12e-100 296
Msa0901650 MtrunA17_Chr3g0121141 48.505 301 146 4 3 297 4 301 1.18e-99 295
Msa0901650 MtrunA17_Chr5g0439011 48.052 308 145 5 1 297 3 306 2.07e-99 295
Msa0901650 MtrunA17_Chr3g0125201 46.688 317 138 6 1 297 1 306 6.83e-90 270
Msa0901650 MtrunA17_Chr4g0006371 38.079 302 162 10 3 285 62 357 6.67e-57 187
Msa0901650 MtrunA17_Chr7g0242551 39.711 277 151 7 3 267 54 326 3.92e-55 182
Msa0901650 MtrunA17_Chr5g0437181 36.918 279 159 7 3 269 49 322 1.61e-52 176
Msa0901650 MtrunA17_Chr3g0113641 37.276 279 158 8 3 269 50 323 2.55e-51 172
Msa0901650 MtrunA17_Chr4g0075471 54.861 144 54 3 148 282 18 159 1.00e-50 165
Msa0901650 MtrunA17_Chr8g0375671 33.803 284 163 8 1 269 50 323 8.00e-45 155
Msa0901650 MtrunA17_Chr8g0375601 32.979 282 167 7 3 271 48 320 9.62e-45 155
Msa0901650 MtrunA17_Chr3g0109041 33.223 301 171 10 2 279 41 334 1.28e-43 152
Msa0901650 MtrunA17_Chr8g0375571 33.692 279 162 9 3 267 45 314 1.14e-42 150
Msa0901650 MtrunA17_Chr3g0128001 35.294 272 159 8 3 266 38 300 3.21e-42 148
Msa0901650 MtrunA17_Chr8g0345831 34.098 305 171 9 2 290 41 331 7.44e-42 147
Msa0901650 MtrunA17_Chr5g0421011 30.795 302 188 7 3 290 47 341 1.96e-41 146
Msa0901650 MtrunA17_Chr7g0239121 32.313 294 179 5 3 288 51 332 2.90e-41 146
Msa0901650 MtrunA17_Chr5g0423251 31.159 276 173 7 3 269 47 314 3.11e-41 146
Msa0901650 MtrunA17_Chr5g0412681 33.898 295 166 10 2 279 32 314 3.64e-41 145
Msa0901650 MtrunA17_Chr8g0375701 33.808 281 164 7 2 271 54 323 6.37e-41 145
Msa0901650 MtrunA17_Chr8g0365241 30.182 275 178 5 3 269 57 325 2.04e-40 144
Msa0901650 MtrunA17_Chr7g0239101 33.007 306 174 10 3 289 55 348 3.96e-40 143
Msa0901650 MtrunA17_Chr5g0421041 31.636 275 173 6 1 267 43 310 1.07e-39 142
Msa0901650 MtrunA17_Chr5g0412651 32.903 310 179 11 2 292 37 336 1.19e-39 142
Msa0901650 MtrunA17_Chr2g0314381 32.258 279 168 8 1 267 75 344 1.39e-39 142
Msa0901650 MtrunA17_Chr7g0239821 33.882 304 172 8 3 285 64 359 1.49e-39 142
Msa0901650 MtrunA17_Chr5g0423191 30.182 275 177 6 3 269 47 314 2.68e-39 141
Msa0901650 MtrunA17_Chr5g0412671 33.119 311 177 11 2 292 37 336 2.94e-39 140
Msa0901650 MtrunA17_Chr5g0426891 33.220 295 172 10 3 280 39 325 3.82e-39 140
Msa0901650 MtrunA17_Chr1g0162191 32.852 277 169 6 3 269 47 316 4.81e-39 140
Msa0901650 MtrunA17_Chr7g0239111 32.542 295 176 8 3 288 55 335 6.09e-39 140
Msa0901650 MtrunA17_Chr2g0311921 32.061 262 157 7 3 253 54 305 8.73e-39 140
Msa0901650 MtrunA17_Chr4g0050031 31.908 304 179 10 3 284 62 359 2.11e-38 139
Msa0901650 MtrunA17_Chr5g0420981 30.182 275 178 5 3 269 53 321 2.24e-38 139
Msa0901650 MtrunA17_Chr5g0420951 27.597 308 191 6 3 290 53 348 4.95e-38 137
Msa0901650 MtrunA17_Chr2g0314391 32.857 280 165 9 1 267 68 337 4.99e-38 138
Msa0901650 MtrunA17_Chr3g0145171 29.348 276 181 5 1 267 50 320 1.18e-37 137
Msa0901650 MtrunA17_Chr3g0087031 32.281 285 166 8 1 271 58 329 8.73e-37 134
Msa0901650 MtrunA17_Chr3g0114861 33.333 282 159 9 23 286 56 326 1.04e-36 134
Msa0901650 MtrunA17_Chr2g0314401 30.714 280 171 8 1 267 49 318 1.06e-36 134
Msa0901650 MtrunA17_Chr8g0371931 33.091 275 159 10 3 262 39 303 1.34e-36 134
Msa0901650 MtrunA17_Chr5g0421101 30.403 273 175 6 3 267 47 312 3.71e-36 132
Msa0901650 MtrunA17_Chr5g0420941 29.276 304 190 8 3 290 45 339 4.44e-36 132
Msa0901650 MtrunA17_Chr5g0424201 33.684 285 163 8 1 271 42 314 5.44e-36 132
Msa0901650 MtrunA17_Chr5g0423221 29.304 273 179 6 3 267 71 337 5.63e-36 132
Msa0901650 MtrunA17_Chr8g0370711 28.826 281 172 6 3 267 52 320 6.79e-36 132
Msa0901650 MtrunA17_Chr2g0311681 27.957 279 181 8 1 269 61 329 1.09e-35 132
Msa0901650 MtrunA17_Chr8g0336751 30.108 279 171 10 1 269 92 356 1.28e-35 132
Msa0901650 MtrunA17_Chr5g0423201 29.562 274 177 6 3 267 47 313 1.53e-35 131
Msa0901650 MtrunA17_Chr5g0420901 30.605 281 172 7 3 271 46 315 1.56e-35 131
Msa0901650 MtrunA17_Chr2g0311741 31.724 290 161 10 1 271 25 296 1.72e-35 130
Msa0901650 MtrunA17_Chr2g0296371 29.260 311 184 8 3 289 50 348 4.72e-35 130
Msa0901650 MtrunA17_Chr3g0126741 32.459 305 180 10 2 289 58 353 4.74e-35 130
Msa0901650 MtrunA17_Chr1g0187831 30.268 261 160 10 3 252 70 319 5.30e-35 130
Msa0901650 MtrunA17_Chr2g0311761 29.924 264 158 6 3 252 68 318 7.43e-35 129
Msa0901650 MtrunA17_Chr4g0064781 29.210 291 183 7 1 276 48 330 1.45e-34 128
Msa0901650 MtrunA17_Chr2g0311701 26.736 288 184 9 1 271 67 344 1.57e-34 129
Msa0901650 MtrunA17_Chr2g0319491 30.450 289 175 11 3 279 33 307 1.66e-34 127
Msa0901650 MtrunA17_Chr8g0354261 29.316 307 182 10 1 283 66 361 1.95e-34 129
Msa0901650 MtrunA17_Chr2g0311691 27.500 280 181 9 1 269 61 329 2.02e-34 128
Msa0901650 MtrunA17_Chr7g0265221 29.874 318 199 8 1 297 65 379 2.75e-34 128
Msa0901650 MtrunA17_Chr8g0370721 28.904 301 190 7 3 285 52 346 3.35e-34 127
Msa0901650 MtrunA17_Chr8g0371921 32.727 275 160 10 3 262 39 303 4.23e-34 127
Msa0901650 MtrunA17_Chr5g0423211 30.392 306 186 8 3 290 47 343 4.78e-34 127
Msa0901650 MtrunA17_Chr5g0424211 31.183 279 172 8 1 267 40 310 1.04e-33 125
Msa0901650 MtrunA17_Chr8g0375681 32.400 250 141 7 37 271 17 253 1.16e-33 124
Msa0901650 MtrunA17_Chr7g0239091 32.313 294 182 7 3 289 160 443 1.19e-33 128
Msa0901650 MtrunA17_Chr5g0398291 29.787 282 174 9 3 267 47 321 2.97e-33 125
Msa0901650 MtrunA17_Chr7g0239071 31.922 307 177 12 8 302 6 292 4.02e-33 124
Msa0901650 MtrunA17_Chr5g0405411 32.155 283 151 10 3 262 39 303 4.25e-33 124
Msa0901650 MtrunA17_Chr2g0311711 28.626 262 167 8 1 252 65 316 4.48e-33 125
Msa0901650 MtrunA17_Chr8g0364471 29.057 265 162 8 1 252 65 316 6.42e-33 124
Msa0901650 MtrunA17_Chr8g0354241 28.571 287 179 9 1 271 66 342 7.34e-33 124
Msa0901650 MtrunA17_Chr7g0232161 33.333 243 145 6 3 236 60 294 8.11e-33 123
Msa0901650 MtrunA17_Chr8g0336851 30.189 265 160 9 2 253 59 311 1.22e-32 123
Msa0901650 MtrunA17_Chr7g0266651 32.394 284 163 11 2 269 58 328 1.32e-32 123
Msa0901650 MtrunA17_Chr2g0311831 28.671 286 173 8 3 271 68 339 1.48e-32 123
Msa0901650 MtrunA17_Chr1g0187811 27.273 286 183 10 1 271 186 461 1.74e-32 125
Msa0901650 MtrunA17_Chr1g0148771 30.435 276 160 10 2 263 62 319 2.23e-32 122
Msa0901650 MtrunA17_Chr1g0187821 28.070 285 180 11 1 271 65 338 3.55e-32 122
Msa0901650 MtrunA17_Chr7g0235951 28.223 287 180 11 1 271 65 341 4.36e-32 122
Msa0901650 MtrunA17_Chr5g0421091 28.929 280 175 8 3 269 45 313 5.19e-32 121
Msa0901650 MtrunA17_Chr2g0332191 28.975 283 172 9 3 270 52 320 5.74e-32 122
Msa0901650 MtrunA17_Chr4g0045411 29.066 289 172 9 2 266 29 308 1.70e-31 120
Msa0901650 MtrunA17_Chr8g0336781 29.008 262 166 8 2 252 94 346 2.28e-31 120
Msa0901650 MtrunA17_Chr1g0167911 30.690 290 165 11 3 280 54 319 2.31e-31 120
Msa0901650 MtrunA17_Chr3g0145181 27.815 302 191 8 1 283 47 340 2.62e-31 120
Msa0901650 MtrunA17_Chr5g0420721 33.684 190 118 3 82 269 33 216 3.00e-31 117
Msa0901650 MtrunA17_Chr3g0102041 30.576 278 162 9 3 262 39 303 8.78e-31 118
Msa0901650 MtrunA17_Chr8g0336861 27.532 316 200 10 2 297 59 365 1.27e-30 118
Msa0901650 MtrunA17_Chr1g0179801 29.492 295 182 8 1 277 64 350 1.38e-30 118
Msa0901650 MtrunA17_Chr7g0220001 29.355 310 187 11 2 295 40 333 3.88e-30 116
Msa0901650 MtrunA17_Chr7g0225881 30.104 289 169 13 3 280 67 333 7.81e-30 116
Msa0901650 MtrunA17_Chr8g0336631 28.929 280 173 10 2 269 59 324 8.33e-30 116
Msa0901650 MtrunA17_Chr4g0066121 27.170 265 167 9 2 252 59 311 8.73e-30 116
Msa0901650 MtrunA17_Chr3g0145201 27.815 302 191 8 1 283 682 975 1.12e-29 119
Msa0901650 MtrunA17_Chr4g0075431 37.288 177 96 4 3 167 4 177 1.81e-29 110
Msa0901650 MtrunA17_Chr2g0311861 30.952 252 150 8 3 252 64 293 2.51e-29 114
Msa0901650 MtrunA17_Chr1g0184241 29.502 261 164 8 3 254 69 318 2.51e-29 114
Msa0901650 MtrunA17_Chr6g0474391 29.693 293 165 11 1 267 62 339 5.43e-29 114
Msa0901650 MtrunA17_Chr6g0455481 26.688 311 197 9 2 296 41 336 1.00e-28 112
Msa0901650 MtrunA17_Chr8g0348081 28.244 262 167 8 2 252 59 310 1.07e-28 113
Msa0901650 MtrunA17_Chr8g0336761 29.181 281 170 10 2 269 59 323 1.12e-28 113
Msa0901650 MtrunA17_Chr7g0250511 29.530 298 180 11 2 280 48 334 1.67e-28 112
Msa0901650 MtrunA17_Chr1g0184101 29.455 275 173 8 3 266 38 302 3.14e-28 111
Msa0901650 MtrunA17_Chr4g0045451 26.846 298 172 8 2 266 25 309 3.31e-28 111
Msa0901650 MtrunA17_Chr4g0055591 27.027 259 168 8 2 252 60 305 5.85e-28 110
Msa0901650 MtrunA17_Chr1g0167951 28.571 287 177 9 2 280 52 318 6.62e-28 110
Msa0901650 MtrunA17_Chr7g0265351 27.987 318 188 13 2 296 38 337 1.34e-27 109
Msa0901650 MtrunA17_Chr1g0204181 29.693 293 165 11 1 267 57 334 1.56e-27 110
Msa0901650 MtrunA17_Chr7g0236011 29.167 264 163 9 1 252 65 316 1.75e-27 110
Msa0901650 MtrunA17_Chr2g0311631 29.231 325 181 13 3 296 55 361 2.01e-27 109
Msa0901650 MtrunA17_Chr8g0335411 30.682 264 159 9 1 252 65 316 2.25e-27 109
Msa0901650 MtrunA17_Chr7g0247991 29.924 264 161 9 1 252 65 316 2.79e-27 109
Msa0901650 MtrunA17_Chr8g0351101 25.472 318 195 10 1 289 52 356 5.31e-27 108
Msa0901650 MtrunA17_Chr1g0184111 27.000 300 197 8 2 286 36 328 6.64e-27 107
Msa0901650 MtrunA17_Chr1g0184151 28.254 315 176 12 2 288 37 329 8.73e-27 107
Msa0901650 MtrunA17_Chr4g0045441 25.484 310 181 9 4 278 33 327 1.01e-26 107
Msa0901650 MtrunA17_Chr1g0162321 25.705 319 195 8 3 286 69 380 1.37e-26 107
Msa0901650 MtrunA17_Chr1g0184161 27.306 271 180 6 2 263 37 299 2.05e-26 106
Msa0901650 MtrunA17_Chr1g0162351 26.606 327 182 10 3 286 69 380 2.65e-26 107
Msa0901650 MtrunA17_Chr7g0220011 26.214 309 198 10 2 295 38 331 5.35e-26 105
Msa0901650 MtrunA17_Chr3g0093741 27.476 313 196 12 2 296 55 354 7.00e-26 105
Msa0901650 MtrunA17_Chr7g0235981 30.769 234 139 8 35 258 56 276 1.00e-25 104
Msa0901650 MtrunA17_Chr6g0472861 27.757 263 164 12 3 252 70 319 2.05e-25 104
Msa0901650 MtrunA17_Chr1g0184121 27.063 303 196 9 2 288 36 329 2.28e-25 103
Msa0901650 MtrunA17_Chr3g0093761 28.000 275 177 9 2 267 55 317 3.33e-25 103
Msa0901650 MtrunA17_Chr4g0066991 27.451 255 159 7 1 252 65 296 4.99e-25 102
Msa0901650 MtrunA17_Chr3g0092531 29.431 299 186 9 3 285 6 295 5.32e-25 102
Msa0901650 MtrunA17_Chr3g0093751 27.536 276 178 8 2 267 55 318 2.04e-24 101
Msa0901650 MtrunA17_Chr3g0105281 28.676 272 162 9 3 260 34 287 2.72e-24 100
Msa0901650 MtrunA17_Chr1g0167961 29.119 261 167 9 2 253 68 319 3.32e-24 100
Msa0901650 MtrunA17_Chr4g0045471 25.000 316 186 9 2 278 25 328 3.39e-24 100
Msa0901650 MtrunA17_Chr5g0394071 32.026 153 97 3 108 260 1 146 5.10e-24 96.3
Msa0901650 MtrunA17_Chr5g0420881 37.313 134 77 2 162 289 4 136 5.73e-24 95.1
Msa0901650 MtrunA17_Chr4g0064771 33.898 177 103 4 110 277 27 198 6.09e-24 97.1
Msa0901650 MtrunA17_Chr1g0162361 26.552 290 182 9 3 271 27 306 1.66e-23 98.6
Msa0901650 MtrunA17_Chr1g0161041 27.046 281 170 10 3 266 96 358 3.34e-23 98.6
Msa0901650 MtrunA17_Chr8g0384481 26.518 313 194 13 1 288 57 358 3.56e-23 98.2
Msa0901650 MtrunA17_Chr3g0126761 37.368 190 108 6 105 288 39 223 3.58e-23 95.5
Msa0901650 MtrunA17_Chr4g0011311 26.180 233 154 7 1 224 65 288 4.14e-23 97.1
Msa0901650 MtrunA17_Chr3g0114871 31.707 246 146 10 1 234 40 275 4.20e-23 96.3
Msa0901650 MtrunA17_Chr4g0045431 26.214 309 188 11 3 278 26 327 1.09e-22 96.3
Msa0901650 MtrunA17_Chr2g0314371 27.372 274 150 10 1 238 50 310 3.06e-22 94.7
Msa0901650 MtrunA17_Chr3g0130391 26.829 287 175 12 4 267 67 341 6.07e-22 94.7
Msa0901650 MtrunA17_Chr2g0285931 25.352 284 181 9 2 267 27 297 1.32e-21 93.2
Msa0901650 MtrunA17_Chr8g0384461 24.658 292 179 11 1 267 45 320 1.47e-21 93.6
Msa0901650 MtrunA17_Chr1g0191201 24.113 282 189 9 4 267 54 328 2.23e-21 93.2
Msa0901650 MtrunA17_Chr3g0125421 26.774 310 184 13 1 280 34 330 8.08e-21 91.3
Msa0901650 MtrunA17_Chr7g0233661 40.870 115 63 3 158 272 20 129 1.36e-20 86.7
Msa0901650 MtrunA17_Chr1g0167931 28.235 255 138 8 2 253 53 265 5.54e-20 88.2
Msa0901650 MtrunA17_Chr4g0037611 33.125 160 99 4 119 277 1 153 7.03e-20 85.1
Msa0901650 MtrunA17_Chr1g0161111 27.483 302 189 12 3 289 132 418 8.58e-20 89.0
Msa0901650 MtrunA17_Chr4g0045461 26.351 296 185 7 2 271 25 313 1.22e-19 88.2
Msa0901650 MtrunA17_Chr8g0336801 42.391 92 51 2 162 253 14 103 1.65e-19 83.6
Msa0901650 MtrunA17_Chr1g0161081 31.273 275 166 12 3 266 73 335 1.82e-19 87.4
Msa0901650 MtrunA17_Chr2g0313111 23.906 297 207 8 2 289 27 313 1.96e-19 87.0
Msa0901650 MtrunA17_Chr8g0358941 27.660 282 176 11 3 267 27 297 2.02e-19 87.0
Msa0901650 MtrunA17_Chr5g0407781 26.688 311 162 11 2 280 4 280 1.06e-18 84.3
Msa0901650 MtrunA17_Chr1g0158011 33.508 191 108 9 108 287 69 251 1.43e-18 83.6
Msa0901650 MtrunA17_Chr8g0362741 25.820 244 143 9 1 234 65 280 5.87e-18 82.0
Msa0901650 MtrunA17_Chr4g0004071 27.645 293 159 10 3 267 9 276 6.18e-18 82.4
Msa0901650 MtrunA17_Chr4g0068891 25.000 308 194 12 3 288 20 312 1.01e-17 82.0
Msa0901650 MtrunA17_Chr4g0004061 26.168 321 181 11 3 292 9 304 6.14e-17 79.7
Msa0901650 MtrunA17_Chr1g0170631 32.639 144 91 2 110 253 4 141 7.87e-17 77.4
Msa0901650 MtrunA17_Chr4g0053251 25.862 290 179 10 2 262 7 289 1.03e-16 79.3
Msa0901650 MtrunA17_Chr4g0055911 25.448 279 180 9 1 260 7 276 1.12e-16 79.0
Msa0901650 MtrunA17_Chr4g0052251 25.517 290 171 11 2 267 28 296 5.07e-16 77.4
Msa0901650 MtrunA17_Chr6g0486831 25.862 290 177 10 5 264 20 301 8.65e-16 76.6
Msa0901650 MtrunA17_Chr8g0336871 34.559 136 72 5 120 253 1 121 3.24e-15 72.4
Msa0901650 MtrunA17_Chr3g0092581 30.857 175 105 6 119 285 1 167 3.69e-15 72.4
Msa0901650 MtrunA17_Chr8g0389941 27.875 287 168 13 6 264 37 312 4.12e-15 74.7
Msa0901650 MtrunA17_Chr8g0364171 33.333 111 67 3 114 224 23 126 2.03e-14 69.3
Msa0901650 MtrunA17_Chr1g0158021 26.415 212 140 7 3 206 49 252 2.67e-14 71.6
Msa0901650 MtrunA17_Chr4g0055871 24.549 277 176 11 3 260 9 271 2.25e-13 69.3
Msa0901650 MtrunA17_Chr4g0009561 24.601 313 193 15 3 285 7 306 1.74e-12 67.0
Msa0901650 MtrunA17_Chr2g0293931 26.961 204 127 10 110 298 8 204 2.13e-12 65.1
Msa0901650 MtrunA17_Chr8g0375581 43.077 65 36 1 156 220 22 85 3.12e-12 61.6
Msa0901650 MtrunA17_Chr2g0319521 28.333 120 76 4 108 224 12 124 1.14e-11 61.6
Msa0901650 MtrunA17_Chr7g0256741 26.131 199 135 4 102 294 119 311 2.66e-11 63.5
Msa0901650 MtrunA17_Chr1g0158031 32.143 168 94 9 121 279 3 159 4.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901650 AT2G19590.1 69.637 303 89 2 1 303 9 308 2.40e-156 439
Msa0901650 AT2G19590.2 70.480 271 77 2 33 303 26 293 1.40e-138 394
Msa0901650 AT1G62380.1 47.712 306 150 5 1 300 5 306 8.76e-101 298
Msa0901650 AT1G12010.1 47.039 304 151 5 1 298 5 304 1.68e-99 295
Msa0901650 AT1G05010.1 45.307 309 152 6 2 297 3 307 2.41e-92 277
Msa0901650 AT1G77330.1 45.541 314 147 8 1 298 1 306 2.30e-82 251
Msa0901650 AT2G38240.1 34.909 275 166 5 1 267 46 315 1.72e-49 168
Msa0901650 AT5G05600.1 36.299 281 162 7 3 271 62 337 2.06e-49 168
Msa0901650 AT3G55970.1 33.453 278 170 6 2 267 51 325 1.71e-47 163
Msa0901650 AT3G11180.1 33.441 311 175 9 3 295 95 391 1.87e-44 156
Msa0901650 AT3G11180.2 34.058 276 163 6 3 267 95 362 3.39e-44 155
Msa0901650 AT4G10490.1 33.887 301 176 10 2 286 41 334 4.09e-44 154
Msa0901650 AT4G16330.2 31.148 305 178 9 2 291 66 353 5.31e-42 149
Msa0901650 AT5G08640.2 33.898 295 165 10 2 277 42 325 4.44e-40 143
Msa0901650 AT5G08640.1 33.898 295 165 10 2 277 42 325 4.44e-40 143
Msa0901650 AT5G24530.1 32.353 272 167 8 3 266 38 300 5.98e-40 142
Msa0901650 AT4G10500.1 33.942 274 166 7 2 267 43 309 1.50e-39 142
Msa0901650 AT1G78550.1 30.070 286 173 6 3 273 53 326 1.52e-38 139
Msa0901650 AT5G20550.1 31.786 280 171 5 1 267 43 315 4.72e-38 138
Msa0901650 AT5G20400.1 30.897 301 181 9 1 283 43 334 1.73e-37 136
Msa0901650 AT1G49390.1 31.047 277 176 5 1 267 43 314 8.13e-37 134
Msa0901650 AT1G17010.1 31.673 281 164 8 3 267 54 322 6.71e-36 132
Msa0901650 AT5G05600.2 34.615 234 136 7 3 224 62 290 8.45e-36 130
Msa0901650 AT3G51240.1 32.727 275 160 10 3 262 38 302 1.10e-35 132
Msa0901650 AT1G15550.1 30.605 281 167 9 3 269 57 323 3.21e-35 130
Msa0901650 AT1G17020.1 30.742 283 169 8 1 267 51 322 1.45e-34 129
Msa0901650 AT4G16330.1 34.513 226 132 6 70 291 34 247 2.29e-34 126
Msa0901650 AT5G43450.1 27.586 261 171 7 1 253 59 309 1.87e-33 126
Msa0901650 AT4G25300.1 29.963 267 159 8 3 253 52 306 2.01e-33 125
Msa0901650 AT2G30840.1 29.682 283 161 11 1 266 55 316 4.16e-33 125
Msa0901650 AT5G63590.1 31.973 294 175 9 1 277 12 297 6.85e-33 123
Msa0901650 AT3G55970.2 30.213 235 149 6 2 224 51 282 8.53e-33 123
Msa0901650 AT5G54000.2 29.964 277 169 7 1 262 44 310 9.55e-33 124
Msa0901650 AT1G78550.2 29.070 258 156 6 31 273 3 248 1.60e-32 121
Msa0901650 AT5G59540.1 28.358 268 164 8 1 253 59 313 5.29e-32 122
Msa0901650 AT4G22880.1 29.078 282 176 9 3 267 47 321 6.74e-32 122
Msa0901650 AT4G22880.2 29.078 282 176 9 3 267 47 321 6.74e-32 122
Msa0901650 AT4G22880.3 29.078 282 176 9 3 267 47 321 6.74e-32 122
Msa0901650 AT2G30830.1 31.250 288 168 12 1 271 52 326 9.12e-32 121
Msa0901650 AT4G25310.1 31.667 240 140 7 26 253 76 303 1.04e-31 121
Msa0901650 AT5G59530.1 29.278 263 169 7 1 253 56 311 1.97e-31 120
Msa0901650 AT1G06620.1 29.740 269 157 10 1 253 60 312 5.66e-31 119
Msa0901650 AT1G80340.1 29.433 282 171 7 2 269 49 316 6.10e-31 119
Msa0901650 AT2G36690.2 26.962 293 187 9 1 277 59 340 7.36e-31 119
Msa0901650 AT2G36690.1 26.962 293 187 9 1 277 59 340 7.36e-31 119
Msa0901650 AT1G49390.2 30.126 239 154 4 37 267 2 235 2.01e-30 115
Msa0901650 AT3G21420.1 30.556 324 183 11 3 298 55 364 4.60e-30 117
Msa0901650 AT3G13610.1 28.479 309 168 13 2 281 61 345 7.39e-30 116
Msa0901650 AT2G30840.3 29.329 283 156 12 1 266 55 310 1.04e-29 115
Msa0901650 AT1G03410.2 28.723 282 173 12 1 269 55 321 1.16e-29 115
Msa0901650 AT4G21200.1 29.043 303 192 10 3 293 42 333 1.19e-29 115
Msa0901650 AT1G03410.1 28.723 282 173 12 1 269 92 358 1.74e-29 116
Msa0901650 AT5G07480.1 30.794 315 184 14 3 293 44 348 2.98e-29 114
Msa0901650 AT5G07200.1 27.532 316 183 10 1 283 56 358 3.33e-29 115
Msa0901650 AT1G06650.2 26.882 279 180 10 2 269 63 328 6.26e-29 114
Msa0901650 AT1G04350.1 28.090 267 163 11 1 253 56 307 7.49e-29 114
Msa0901650 AT3G12900.1 28.013 307 190 11 6 293 59 353 1.09e-28 113
Msa0901650 AT3G51240.2 38.043 184 103 6 83 262 42 218 1.77e-28 110
Msa0901650 AT2G44800.1 28.904 301 190 9 2 286 51 343 2.69e-28 112
Msa0901650 AT5G43440.1 24.828 290 187 9 1 280 60 328 5.43e-28 111
Msa0901650 AT1G04380.1 26.996 263 169 9 1 253 43 292 9.50e-28 110
Msa0901650 AT3G60290.1 29.874 318 191 13 3 301 52 356 1.06e-27 110
Msa0901650 AT5G63600.1 27.875 287 189 7 3 279 33 311 1.55e-27 109
Msa0901650 AT1G60980.1 26.462 325 182 13 1 288 55 359 2.04e-27 110
Msa0901650 AT1G55290.1 29.102 323 179 14 2 296 61 361 2.88e-27 109
Msa0901650 AT5G63600.2 28.125 288 188 8 3 279 33 312 1.01e-26 107
Msa0901650 AT5G51810.1 25.714 315 192 11 1 288 61 360 1.42e-26 107
Msa0901650 AT3G61400.1 28.058 278 160 10 2 255 59 320 1.63e-26 107
Msa0901650 AT5G54000.1 29.707 239 145 6 37 262 2 230 1.81e-26 105
Msa0901650 AT1G06645.1 25.641 273 164 10 23 283 100 345 2.20e-26 107
Msa0901650 AT3G19010.1 28.197 305 162 10 3 271 28 311 2.25e-26 107
Msa0901650 AT3G19010.4 28.197 305 162 10 3 271 28 311 2.25e-26 107
Msa0901650 AT1G50960.1 29.259 270 171 8 1 260 38 297 4.42e-26 105
Msa0901650 AT1G03400.1 27.817 284 175 11 1 271 54 320 1.09e-25 105
Msa0901650 AT5G63595.1 27.925 265 163 7 4 264 26 266 2.02e-25 102
Msa0901650 AT1G06640.1 24.643 280 185 10 2 269 63 328 2.52e-25 104
Msa0901650 AT1G80330.1 28.852 305 175 13 2 280 48 336 2.97e-25 103
Msa0901650 AT2G25450.1 28.082 292 177 11 1 280 53 323 3.73e-25 103
Msa0901650 AT4G25420.1 25.705 319 191 11 1 288 59 362 4.03e-25 103
Msa0901650 AT3G19000.1 28.763 299 182 9 3 277 32 323 6.93e-25 102
Msa0901650 AT2G30840.2 28.870 239 140 9 1 223 55 279 7.69e-25 102
Msa0901650 AT1G44090.1 26.761 284 184 10 1 267 61 337 1.26e-24 102
Msa0901650 AT5G43450.2 25.974 231 153 7 1 223 59 279 2.67e-24 100
Msa0901650 AT1G30040.1 26.537 309 190 14 2 288 30 323 1.14e-22 96.7
Msa0901650 AT1G06620.2 28.870 239 138 10 2 224 61 283 1.34e-22 95.5
Msa0901650 AT5G59540.2 27.197 239 146 8 1 224 59 284 1.53e-22 95.1
Msa0901650 AT4G21690.1 26.882 279 173 10 3 262 47 313 1.60e-22 96.3
Msa0901650 AT4G25300.2 32.639 144 92 2 110 253 74 212 5.36e-22 93.2
Msa0901650 AT1G06650.1 27.155 232 150 8 2 223 63 285 5.52e-22 94.4
Msa0901650 AT3G19010.3 27.333 300 177 10 3 286 28 302 1.61e-21 93.2
Msa0901650 AT5G07480.2 36.667 150 82 5 110 253 52 194 2.18e-21 91.3
Msa0901650 AT5G12270.1 28.659 328 176 13 3 297 56 358 3.55e-21 92.8
Msa0901650 AT1G03400.2 26.840 231 147 7 1 224 54 269 7.79e-21 92.0
Msa0901650 AT4G25310.2 27.984 243 117 8 26 253 76 275 1.09e-20 90.9
Msa0901650 AT5G43440.2 24.576 236 158 8 1 226 60 285 2.01e-20 89.4
Msa0901650 AT1G04380.2 25.641 234 155 8 1 226 43 265 1.80e-19 86.7
Msa0901650 AT3G61400.2 27.236 246 140 9 2 224 59 288 2.54e-19 86.7
Msa0901650 AT3G19000.2 26.939 245 149 8 3 224 32 269 7.50e-19 85.1
Msa0901650 AT5G43935.1 27.437 277 158 11 3 266 19 265 7.83e-19 85.1
Msa0901650 AT3G19010.2 27.799 259 130 10 3 225 28 265 1.05e-18 84.7
Msa0901650 AT2G34555.1 25.890 309 193 15 1 288 25 318 1.13e-18 85.5
Msa0901650 AT3G47190.1 28.276 290 137 12 3 254 32 288 1.96e-18 84.7
Msa0901650 AT1G06640.2 24.359 234 156 8 2 224 63 286 1.98e-18 84.3
Msa0901650 AT1G06640.3 24.783 230 152 8 2 220 63 282 2.77e-18 83.6
Msa0901650 AT1G78440.1 25.090 279 185 9 3 267 18 286 6.53e-17 80.1
Msa0901650 AT5G51810.2 25.498 251 153 9 1 231 61 297 1.00e-16 79.3
Msa0901650 AT5G63580.2 28.326 233 147 8 2 224 18 240 2.00e-16 77.4
Msa0901650 AT3G50210.4 26.190 294 179 9 2 262 7 295 5.00e-16 77.8
Msa0901650 AT3G50210.1 26.190 294 179 9 2 262 7 295 5.00e-16 77.8
Msa0901650 AT3G50210.3 26.190 294 179 9 2 262 7 295 5.00e-16 77.8
Msa0901650 AT5G63580.1 28.139 231 146 8 2 222 18 238 6.44e-16 76.3
Msa0901650 AT3G46490.1 29.433 282 164 12 11 264 22 296 8.67e-16 77.0
Msa0901650 AT3G46500.5 28.521 284 172 11 2 264 16 289 1.15e-15 76.6
Msa0901650 AT3G49620.1 28.070 285 178 9 3 262 34 316 1.26e-15 76.6
Msa0901650 AT4G25420.2 24.597 248 149 9 1 224 59 292 5.99e-15 74.3
Msa0901650 AT4G03070.1 26.433 314 173 13 3 281 14 304 1.08e-14 73.9
Msa0901650 AT5G51310.1 25.000 332 206 16 1 299 3 324 2.27e-14 72.8
Msa0901650 AT3G49630.1 27.055 292 172 11 3 262 9 291 3.66e-14 72.4
Msa0901650 AT3G49630.3 27.239 268 164 10 17 262 29 287 9.82e-14 70.9
Msa0901650 AT3G46490.2 28.521 284 168 12 11 267 22 297 1.17e-13 70.5
Msa0901650 AT1G47990.1 23.154 298 193 10 3 277 15 299 1.59e-13 70.5
Msa0901650 AT3G50210.2 30.120 166 106 4 102 262 53 213 5.80e-13 67.8
Msa0901650 AT1G14120.2 24.088 274 177 7 2 262 7 262 5.83e-13 68.6
Msa0901650 AT1G14120.1 24.088 274 177 7 2 262 7 262 5.83e-13 68.6
Msa0901650 AT1G14120.3 24.088 274 177 7 2 262 7 262 5.83e-13 68.6
Msa0901650 AT4G16765.3 31.579 152 91 7 110 254 61 206 7.63e-13 67.4
Msa0901650 AT4G16765.6 31.579 152 91 7 110 254 61 206 9.80e-13 67.0
Msa0901650 AT4G16765.1 31.579 152 91 7 110 254 61 206 9.80e-13 67.0
Msa0901650 AT4G16765.2 31.579 152 91 7 110 254 61 206 9.80e-13 67.0
Msa0901650 AT1G35190.1 26.871 294 176 13 1 264 7 291 2.78e-12 66.6
Msa0901650 AT3G49630.2 30.675 163 104 5 102 262 63 218 3.06e-12 65.9
Msa0901650 AT1G28030.1 27.835 291 164 13 1 265 11 281 7.75e-12 65.5
Msa0901650 AT4G22870.1 35.577 104 51 6 192 283 2 101 1.75e-11 60.8
Msa0901650 AT3G46500.4 31.875 160 95 7 112 264 1 153 2.79e-11 62.0
Msa0901650 AT1G30040.2 23.950 238 152 12 2 224 30 253 3.05e-11 63.2
Msa0901650 AT1G52820.1 26.769 325 183 17 1 295 10 309 6.21e-11 62.8

Find 70 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACTATTTGGAGCTTTA+TGG 0.097365 6_1:+98436206 Msa0901650:CDS
CCCATTGGCCTTATTCTTAA+TGG 0.120984 6_1:-98436267 None:intergenic
AATTCTTCAAAGATGGAAAA+TGG 0.189069 6_1:+98435804 Msa0901650:CDS
CTTAGTCCTCTAACCAATTC+TGG 0.204359 6_1:-98435719 None:intergenic
TTATTGCTATGGTGACTATT+TGG 0.248128 6_1:+98436196 Msa0901650:CDS
ATTTGAATCCATTAAGAATA+AGG 0.271542 6_1:+98436259 Msa0901650:CDS
TTCTTAATGGATTCAAATCT+AGG 0.286214 6_1:-98436254 None:intergenic
AAGTAGAAATTAAGAGTATT+AGG 0.300397 6_1:-98436332 None:intergenic
AGTCTACTTCCATTCTTATC+AGG 0.301445 6_1:-98436098 None:intergenic
CATTGCTCAACACTTCAATT+TGG 0.304728 6_1:-98436043 None:intergenic
CCTCTAACCAATTCTGGATA+TGG 0.311179 6_1:-98435713 None:intergenic
TTACTTGGATACAAGAGTTT+AGG 0.311403 6_1:-98436173 None:intergenic
GGGAAAGTTCATTCTTCATT+TGG 0.325106 6_1:+98435365 Msa0901650:CDS
GTTTGATGAATTGATATAAC+TGG 0.327640 6_1:-98434925 None:intergenic
GAAATAATAGCTTCACCAAT+TGG 0.345738 6_1:-98436143 None:intergenic
AATTCTGGATATGGACATTC+AGG 0.350390 6_1:-98435704 None:intergenic
GGTCTTGAATTCTTCAAAGA+TGG 0.377617 6_1:+98435797 Msa0901650:CDS
CTTTGTCATCTTGAAGCAAT+AGG 0.381986 6_1:-98435769 None:intergenic
CAAACCTCTCTGAGGAGCTT+TGG 0.383939 6_1:+98435419 Msa0901650:CDS
ACAAATACTTATCATAGATA+TGG 0.398601 6_1:+98434976 Msa0901650:exon
GCAAGTTTCTATAATCCAAT+TGG 0.413990 6_1:+98436128 Msa0901650:CDS
CCATATCCAGAATTGGTTAG+AGG 0.423481 6_1:+98435713 Msa0901650:CDS
AAAACTAAGTTTGGTGATAA+GGG 0.425129 6_1:+98436230 Msa0901650:CDS
TAATAATAATGGACCAGCTA+TGG 0.433603 6_1:+98435661 Msa0901650:CDS
TGAATGTCCATATCCAGAAT+TGG 0.449791 6_1:+98435706 Msa0901650:CDS
CAAAGCTCCTCAGAGAGGTT+TGG 0.450378 6_1:-98435418 None:intergenic
GATGAGTGAAAATCTTGGTT+TGG 0.451151 6_1:+98435604 Msa0901650:CDS
ATCGTCCGACGTCTAACATT+AGG 0.472104 6_1:+98435389 Msa0901650:CDS
ATACAAAAGTGTTGTGCATA+GGG 0.481503 6_1:+98436070 Msa0901650:CDS
AGAAAGGAAAATGTAACATC+AGG 0.487333 6_1:+98436372 Msa0901650:three_prime_UTR
TATCCAAGTAATTATTGCTA+TGG 0.487433 6_1:+98436185 Msa0901650:CDS
TGACAAAAGAGGTGAAACTA+TGG 0.492889 6_1:+98435033 Msa0901650:CDS
GCTGATGGAGAAGGTGAAGA+AGG 0.495499 6_1:+98435243 Msa0901650:CDS
ATTGAGAACCATGACATTGA+GGG 0.497057 6_1:+98435217 Msa0901650:CDS
TATACAAAAGTGTTGTGCAT+AGG 0.502505 6_1:+98436069 Msa0901650:CDS
CCATTAAGAATAAGGCCAAT+GGG 0.508737 6_1:+98436267 Msa0901650:CDS
ACCTCTTGGCTATCTCAGAT+TGG 0.513980 6_1:-98435309 None:intergenic
CAGATGATGAGTGAAAATCT+TGG 0.514187 6_1:+98435599 Msa0901650:CDS
GATTGAGAACCATGACATTG+AGG 0.522032 6_1:+98435216 Msa0901650:intron
TCCATTAAGAATAAGGCCAA+TGG 0.527861 6_1:+98436266 Msa0901650:CDS
AGAACACCTGTGATGTTGAC+TGG 0.531587 6_1:+98435344 Msa0901650:CDS
CTAAGAGAACATACAGATGC+TGG 0.535915 6_1:+98435737 Msa0901650:CDS
TCACCATAGCAATAATTACT+TGG 0.538943 6_1:-98436188 None:intergenic
CTTCAAGATGACAAAGTACC+TGG 0.540243 6_1:+98435776 Msa0901650:CDS
AATAATAATGGACCAGCTAT+GGG 0.543717 6_1:+98435662 Msa0901650:CDS
TCAGCTTCCCCTCAATGTCA+TGG 0.554265 6_1:-98435225 None:intergenic
TGACATTGAGGGGAAGCTGA+TGG 0.556135 6_1:+98435228 Msa0901650:CDS
ATCTGAGATAGCCAAGAGGT+TGG 0.561844 6_1:+98435312 Msa0901650:CDS
CAAATTGAAGTGTTGAGCAA+TGG 0.562361 6_1:+98436044 Msa0901650:CDS
ATGTTACAAATAGCCAAGAA+AGG 0.562986 6_1:+98436356 Msa0901650:three_prime_UTR
TGAGGGGAAGCTGATGGAGA+AGG 0.573717 6_1:+98435234 Msa0901650:CDS
ACCAGCTATGGGAACAAAAG+TGG 0.582336 6_1:+98435673 Msa0901650:CDS
TGAATTGATATAACTGGATG+AGG 0.586183 6_1:-98434919 None:intergenic
TTACTATGAAGAAAATCTGA+AGG 0.594001 6_1:+98435276 Msa0901650:CDS
ACTCTCAATGGTGACAAAAG+AGG 0.595016 6_1:+98435022 Msa0901650:CDS
AGGGTGATTCCTGATAAGAA+TGG 0.598709 6_1:+98436089 Msa0901650:CDS
GTGTAAATGCAGCGAAACAA+TGG 0.601045 6_1:+98435532 Msa0901650:intron
GGATACAAGAGTTTAGGAGC+TGG 0.601118 6_1:-98436167 None:intergenic
GTAGTAGTACTAGTTCCCAT+TGG 0.601509 6_1:-98436282 None:intergenic
ATTCTGGATATGGACATTCA+GGG 0.602948 6_1:-98435703 None:intergenic
AGAGTGCTAAAATCTATCAC+AGG 0.607878 6_1:-98435004 None:intergenic
TTGAGAACCATGACATTGAG+GGG 0.639790 6_1:+98435218 Msa0901650:CDS
ACTTTCCCAGTCAACATCAC+AGG 0.639833 6_1:-98435350 None:intergenic
AATGCAATCTTTGTCAACAC+AGG 0.645759 6_1:+98435851 Msa0901650:CDS
AGAGAACATACAGATGCTGG+TGG 0.658975 6_1:+98435740 Msa0901650:CDS
GAACACCTGTGATGTTGACT+GGG 0.666248 6_1:+98435345 Msa0901650:CDS
TCTTTGAAGAATTCAAGACC+AGG 0.676121 6_1:-98435794 None:intergenic
GAAAATTCCAAACCTCTCTG+AGG 0.679494 6_1:+98435411 Msa0901650:CDS
ACCAATCTGAGATAGCCAAG+AGG 0.699692 6_1:+98435308 Msa0901650:CDS
CTAACCAAAGCTCCTCAGAG+AGG 0.716992 6_1:-98435423 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATGTTACATTTTTCTTT+TGG + chr6_1:98435127-98435146 Msa0901650:intron 15.0%
!!! TGTAACATATAGTATTTTTT+TGG + chr6_1:98435159-98435178 Msa0901650:intron 15.0%
!!! ATTTTCTAAATAATCTTAAC+AGG + chr6_1:98436017-98436036 Msa0901650:intron 15.0%
!!! TTAATGTTACATTTTTCTTT+TGG + chr6_1:98435127-98435146 Msa0901650:intron 15.0%
!!! TGTAACATATAGTATTTTTT+TGG + chr6_1:98435159-98435178 Msa0901650:intron 15.0%
!!! ATTTTCTAAATAATCTTAAC+AGG + chr6_1:98436017-98436036 Msa0901650:intron 15.0%
!! ACAAATACTTATCATAGATA+TGG + chr6_1:98434976-98434995 Msa0901650:exon 20.0%
!! AAGTGAATAAACATTTATGT+TGG + chr6_1:98435100-98435119 Msa0901650:intron 20.0%
!!! TTTTCAGGAAGTAATAATAA+TGG + chr6_1:98435650-98435669 Msa0901650:CDS 20.0%
!! ATTTGAATCCATTAAGAATA+AGG + chr6_1:98436259-98436278 Msa0901650:CDS 20.0%
!!! AAGTAGAAATTAAGAGTATT+AGG - chr6_1:98436335-98436354 None:intergenic 20.0%
!! ACAAATACTTATCATAGATA+TGG + chr6_1:98434976-98434995 Msa0901650:exon 20.0%
!! AAGTGAATAAACATTTATGT+TGG + chr6_1:98435100-98435119 Msa0901650:intron 20.0%
!!! TTTTCAGGAAGTAATAATAA+TGG + chr6_1:98435650-98435669 Msa0901650:CDS 20.0%
!! ATTTGAATCCATTAAGAATA+AGG + chr6_1:98436259-98436278 Msa0901650:CDS 20.0%
!!! AAGTAGAAATTAAGAGTATT+AGG - chr6_1:98436335-98436354 None:intergenic 20.0%
! GTTTGATGAATTGATATAAC+TGG - chr6_1:98434928-98434947 None:intergenic 25.0%
! TTACTATGAAGAAAATCTGA+AGG + chr6_1:98435276-98435295 Msa0901650:CDS 25.0%
!!! TGTGTTTCTCTATTTTAAAC+CGG + chr6_1:98435487-98435506 Msa0901650:intron 25.0%
! CATTGAAAAATTAGTTCAAG+TGG + chr6_1:98435562-98435581 Msa0901650:CDS 25.0%
! AATTCTTCAAAGATGGAAAA+TGG + chr6_1:98435804-98435823 Msa0901650:CDS 25.0%
!!! AAGATTGCATTGTTTTTTGA+AGG - chr6_1:98435842-98435861 None:intergenic 25.0%
! TATCCAAGTAATTATTGCTA+TGG + chr6_1:98436185-98436204 Msa0901650:CDS 25.0%
! CTTTATGGAAAAACTAAGTT+TGG + chr6_1:98436221-98436240 Msa0901650:CDS 25.0%
!! AAAAACTAAGTTTGGTGATA+AGG + chr6_1:98436229-98436248 Msa0901650:CDS 25.0%
!! AAAACTAAGTTTGGTGATAA+GGG + chr6_1:98436230-98436249 Msa0901650:CDS 25.0%
!!! TTCTTAATGGATTCAAATCT+AGG - chr6_1:98436257-98436276 None:intergenic 25.0%
! GCTACAAAAAAGAGATAAAA+AGG - chr6_1:98434889-98434908 None:intergenic 25.0%
! GTTTGATGAATTGATATAAC+TGG - chr6_1:98434928-98434947 None:intergenic 25.0%
! TTACTATGAAGAAAATCTGA+AGG + chr6_1:98435276-98435295 Msa0901650:CDS 25.0%
!!! TGTGTTTCTCTATTTTAAAC+CGG + chr6_1:98435487-98435506 Msa0901650:intron 25.0%
! CATTGAAAAATTAGTTCAAG+TGG + chr6_1:98435562-98435581 Msa0901650:CDS 25.0%
! AATTCTTCAAAGATGGAAAA+TGG + chr6_1:98435804-98435823 Msa0901650:CDS 25.0%
!!! AAGATTGCATTGTTTTTTGA+AGG - chr6_1:98435842-98435861 None:intergenic 25.0%
! TATCCAAGTAATTATTGCTA+TGG + chr6_1:98436185-98436204 Msa0901650:CDS 25.0%
! CTTTATGGAAAAACTAAGTT+TGG + chr6_1:98436221-98436240 Msa0901650:CDS 25.0%
!! AAAAACTAAGTTTGGTGATA+AGG + chr6_1:98436229-98436248 Msa0901650:CDS 25.0%
!! AAAACTAAGTTTGGTGATAA+GGG + chr6_1:98436230-98436249 Msa0901650:CDS 25.0%
!!! TTCTTAATGGATTCAAATCT+AGG - chr6_1:98436257-98436276 None:intergenic 25.0%
TGAATTGATATAACTGGATG+AGG - chr6_1:98434922-98434941 None:intergenic 30.0%
!! ATAGATTTTAGCACTCTCAA+TGG + chr6_1:98435010-98435029 Msa0901650:CDS 30.0%
! ATTTTCCTAATGTTAGACGT+CGG - chr6_1:98435397-98435416 None:intergenic 30.0%
! TACATAAAGACAGCATTTTC+AGG + chr6_1:98435635-98435654 Msa0901650:CDS 30.0%
!! TAATAATAATGGACCAGCTA+TGG + chr6_1:98435661-98435680 Msa0901650:CDS 30.0%
!! AATAATAATGGACCAGCTAT+GGG + chr6_1:98435662-98435681 Msa0901650:CDS 30.0%
!!! ATTGCATTGTTTTTTGAAGG+TGG - chr6_1:98435839-98435858 None:intergenic 30.0%
ATTAAACTTTGACACTGACA+CGG - chr6_1:98435996-98436015 None:intergenic 30.0%
!! TATACAAAAGTGTTGTGCAT+AGG + chr6_1:98436069-98436088 Msa0901650:CDS 30.0%
!! ATACAAAAGTGTTGTGCATA+GGG + chr6_1:98436070-98436089 Msa0901650:CDS 30.0%
GCAAGTTTCTATAATCCAAT+TGG + chr6_1:98436128-98436147 Msa0901650:CDS 30.0%
GAAATAATAGCTTCACCAAT+TGG - chr6_1:98436146-98436165 None:intergenic 30.0%
TTACTTGGATACAAGAGTTT+AGG - chr6_1:98436176-98436195 None:intergenic 30.0%
TCACCATAGCAATAATTACT+TGG - chr6_1:98436191-98436210 None:intergenic 30.0%
TTATTGCTATGGTGACTATT+TGG + chr6_1:98436196-98436215 Msa0901650:CDS 30.0%
ATGTTACAAATAGCCAAGAA+AGG + chr6_1:98436356-98436375 Msa0901650:three_prime_UTR 30.0%
! GATGTTACATTTTCCTTTCT+TGG - chr6_1:98436372-98436391 None:intergenic 30.0%
AGAAAGGAAAATGTAACATC+AGG + chr6_1:98436372-98436391 Msa0901650:three_prime_UTR 30.0%
TGAATTGATATAACTGGATG+AGG - chr6_1:98434922-98434941 None:intergenic 30.0%
!! ATAGATTTTAGCACTCTCAA+TGG + chr6_1:98435010-98435029 Msa0901650:CDS 30.0%
! ATTTTCCTAATGTTAGACGT+CGG - chr6_1:98435397-98435416 None:intergenic 30.0%
! TACATAAAGACAGCATTTTC+AGG + chr6_1:98435635-98435654 Msa0901650:CDS 30.0%
!! TAATAATAATGGACCAGCTA+TGG + chr6_1:98435661-98435680 Msa0901650:CDS 30.0%
!! AATAATAATGGACCAGCTAT+GGG + chr6_1:98435662-98435681 Msa0901650:CDS 30.0%
!!! ATTGCATTGTTTTTTGAAGG+TGG - chr6_1:98435839-98435858 None:intergenic 30.0%
ATTAAACTTTGACACTGACA+CGG - chr6_1:98435996-98436015 None:intergenic 30.0%
!! TATACAAAAGTGTTGTGCAT+AGG + chr6_1:98436069-98436088 Msa0901650:CDS 30.0%
!! ATACAAAAGTGTTGTGCATA+GGG + chr6_1:98436070-98436089 Msa0901650:CDS 30.0%
GCAAGTTTCTATAATCCAAT+TGG + chr6_1:98436128-98436147 Msa0901650:CDS 30.0%
GAAATAATAGCTTCACCAAT+TGG - chr6_1:98436146-98436165 None:intergenic 30.0%
TTACTTGGATACAAGAGTTT+AGG - chr6_1:98436176-98436195 None:intergenic 30.0%
TCACCATAGCAATAATTACT+TGG - chr6_1:98436191-98436210 None:intergenic 30.0%
TTATTGCTATGGTGACTATT+TGG + chr6_1:98436196-98436215 Msa0901650:CDS 30.0%
ATGTTACAAATAGCCAAGAA+AGG + chr6_1:98436356-98436375 Msa0901650:three_prime_UTR 30.0%
! GATGTTACATTTTCCTTTCT+TGG - chr6_1:98436372-98436391 None:intergenic 30.0%
AGAAAGGAAAATGTAACATC+AGG + chr6_1:98436372-98436391 Msa0901650:three_prime_UTR 30.0%
! AGAGTGCTAAAATCTATCAC+AGG - chr6_1:98435007-98435026 None:intergenic 35.0%
TGACAAAAGAGGTGAAACTA+TGG + chr6_1:98435033-98435052 Msa0901650:CDS 35.0%
TGCATGAAGCTTGTCAAAAA+TGG + chr6_1:98435062-98435081 Msa0901650:CDS 35.0%
GCATGAAGCTTGTCAAAAAT+GGG + chr6_1:98435063-98435082 Msa0901650:CDS 35.0%
CATGAAGCTTGTCAAAAATG+GGG + chr6_1:98435064-98435083 Msa0901650:CDS 35.0%
ATTGAGAACCATGACATTGA+GGG + chr6_1:98435217-98435236 Msa0901650:CDS 35.0%
GGGAAAGTTCATTCTTCATT+TGG + chr6_1:98435365-98435384 Msa0901650:CDS 35.0%
ATAGAGAAACACACGATGTT+TGG - chr6_1:98435480-98435499 None:intergenic 35.0%
TATTGTTAGAACAACAGCTC+CGG - chr6_1:98435509-98435528 None:intergenic 35.0%
CAGATGATGAGTGAAAATCT+TGG + chr6_1:98435599-98435618 Msa0901650:CDS 35.0%
GATGAGTGAAAATCTTGGTT+TGG + chr6_1:98435604-98435623 Msa0901650:CDS 35.0%
ATTCTGGATATGGACATTCA+GGG - chr6_1:98435706-98435725 None:intergenic 35.0%
AATTCTGGATATGGACATTC+AGG - chr6_1:98435707-98435726 None:intergenic 35.0%
TGAATGTCCATATCCAGAAT+TGG + chr6_1:98435706-98435725 Msa0901650:CDS 35.0%
CTTTGTCATCTTGAAGCAAT+AGG - chr6_1:98435772-98435791 None:intergenic 35.0%
! TCTTTGAAGAATTCAAGACC+AGG - chr6_1:98435797-98435816 None:intergenic 35.0%
GGTCTTGAATTCTTCAAAGA+TGG + chr6_1:98435797-98435816 Msa0901650:CDS 35.0%
AATGCAATCTTTGTCAACAC+AGG + chr6_1:98435851-98435870 Msa0901650:CDS 35.0%
CATTGCTCAACACTTCAATT+TGG - chr6_1:98436046-98436065 None:intergenic 35.0%
!! CAAATTGAAGTGTTGAGCAA+TGG + chr6_1:98436044-98436063 Msa0901650:CDS 35.0%
AGTCTACTTCCATTCTTATC+AGG - chr6_1:98436101-98436120 None:intergenic 35.0%
TCCATTAAGAATAAGGCCAA+TGG + chr6_1:98436266-98436285 Msa0901650:CDS 35.0%
CCATTAAGAATAAGGCCAAT+GGG + chr6_1:98436267-98436286 Msa0901650:CDS 35.0%
! AGAGTGCTAAAATCTATCAC+AGG - chr6_1:98435007-98435026 None:intergenic 35.0%
TGACAAAAGAGGTGAAACTA+TGG + chr6_1:98435033-98435052 Msa0901650:CDS 35.0%
TGCATGAAGCTTGTCAAAAA+TGG + chr6_1:98435062-98435081 Msa0901650:CDS 35.0%
GCATGAAGCTTGTCAAAAAT+GGG + chr6_1:98435063-98435082 Msa0901650:CDS 35.0%
CATGAAGCTTGTCAAAAATG+GGG + chr6_1:98435064-98435083 Msa0901650:CDS 35.0%
ATTGAGAACCATGACATTGA+GGG + chr6_1:98435217-98435236 Msa0901650:CDS 35.0%
GGGAAAGTTCATTCTTCATT+TGG + chr6_1:98435365-98435384 Msa0901650:CDS 35.0%
ATAGAGAAACACACGATGTT+TGG - chr6_1:98435480-98435499 None:intergenic 35.0%
TATTGTTAGAACAACAGCTC+CGG - chr6_1:98435509-98435528 None:intergenic 35.0%
CAGATGATGAGTGAAAATCT+TGG + chr6_1:98435599-98435618 Msa0901650:CDS 35.0%
GATGAGTGAAAATCTTGGTT+TGG + chr6_1:98435604-98435623 Msa0901650:CDS 35.0%
ATTCTGGATATGGACATTCA+GGG - chr6_1:98435706-98435725 None:intergenic 35.0%
AATTCTGGATATGGACATTC+AGG - chr6_1:98435707-98435726 None:intergenic 35.0%
TGAATGTCCATATCCAGAAT+TGG + chr6_1:98435706-98435725 Msa0901650:CDS 35.0%
CTTTGTCATCTTGAAGCAAT+AGG - chr6_1:98435772-98435791 None:intergenic 35.0%
! TCTTTGAAGAATTCAAGACC+AGG - chr6_1:98435797-98435816 None:intergenic 35.0%
GGTCTTGAATTCTTCAAAGA+TGG + chr6_1:98435797-98435816 Msa0901650:CDS 35.0%
AATGCAATCTTTGTCAACAC+AGG + chr6_1:98435851-98435870 Msa0901650:CDS 35.0%
CATTGCTCAACACTTCAATT+TGG - chr6_1:98436046-98436065 None:intergenic 35.0%
!! CAAATTGAAGTGTTGAGCAA+TGG + chr6_1:98436044-98436063 Msa0901650:CDS 35.0%
AGTCTACTTCCATTCTTATC+AGG - chr6_1:98436101-98436120 None:intergenic 35.0%
TCCATTAAGAATAAGGCCAA+TGG + chr6_1:98436266-98436285 Msa0901650:CDS 35.0%
CCATTAAGAATAAGGCCAAT+GGG + chr6_1:98436267-98436286 Msa0901650:CDS 35.0%
ACTCTCAATGGTGACAAAAG+AGG + chr6_1:98435022-98435041 Msa0901650:CDS 40.0%
! TCAAAAATGGGGTTGCTTTC+TGG + chr6_1:98435075-98435094 Msa0901650:CDS 40.0%
GATTGAGAACCATGACATTG+AGG + chr6_1:98435216-98435235 Msa0901650:intron 40.0%
TTGAGAACCATGACATTGAG+GGG + chr6_1:98435218-98435237 Msa0901650:CDS 40.0%
GAAAATTCCAAACCTCTCTG+AGG + chr6_1:98435411-98435430 Msa0901650:CDS 40.0%
GTGTAAATGCAGCGAAACAA+TGG + chr6_1:98435532-98435551 Msa0901650:intron 40.0%
CCTCTAACCAATTCTGGATA+TGG - chr6_1:98435716-98435735 None:intergenic 40.0%
CCATATCCAGAATTGGTTAG+AGG + chr6_1:98435713-98435732 Msa0901650:CDS 40.0%
CTTAGTCCTCTAACCAATTC+TGG - chr6_1:98435722-98435741 None:intergenic 40.0%
CTAAGAGAACATACAGATGC+TGG + chr6_1:98435737-98435756 Msa0901650:CDS 40.0%
! CTTCAAGATGACAAAGTACC+TGG + chr6_1:98435776-98435795 Msa0901650:CDS 40.0%
AGGGTGATTCCTGATAAGAA+TGG + chr6_1:98436089-98436108 Msa0901650:CDS 40.0%
! GGTGACTATTTGGAGCTTTA+TGG + chr6_1:98436206-98436225 Msa0901650:CDS 40.0%
!! CCCATTGGCCTTATTCTTAA+TGG - chr6_1:98436270-98436289 None:intergenic 40.0%
GTAGTAGTACTAGTTCCCAT+TGG - chr6_1:98436285-98436304 None:intergenic 40.0%
ACTCTCAATGGTGACAAAAG+AGG + chr6_1:98435022-98435041 Msa0901650:CDS 40.0%
! TCAAAAATGGGGTTGCTTTC+TGG + chr6_1:98435075-98435094 Msa0901650:CDS 40.0%
GATTGAGAACCATGACATTG+AGG + chr6_1:98435216-98435235 Msa0901650:intron 40.0%
TTGAGAACCATGACATTGAG+GGG + chr6_1:98435218-98435237 Msa0901650:CDS 40.0%
GAAAATTCCAAACCTCTCTG+AGG + chr6_1:98435411-98435430 Msa0901650:CDS 40.0%
GTGTAAATGCAGCGAAACAA+TGG + chr6_1:98435532-98435551 Msa0901650:intron 40.0%
CCTCTAACCAATTCTGGATA+TGG - chr6_1:98435716-98435735 None:intergenic 40.0%
CCATATCCAGAATTGGTTAG+AGG + chr6_1:98435713-98435732 Msa0901650:CDS 40.0%
CTTAGTCCTCTAACCAATTC+TGG - chr6_1:98435722-98435741 None:intergenic 40.0%
CTAAGAGAACATACAGATGC+TGG + chr6_1:98435737-98435756 Msa0901650:CDS 40.0%
! CTTCAAGATGACAAAGTACC+TGG + chr6_1:98435776-98435795 Msa0901650:CDS 40.0%
AGGGTGATTCCTGATAAGAA+TGG + chr6_1:98436089-98436108 Msa0901650:CDS 40.0%
! GGTGACTATTTGGAGCTTTA+TGG + chr6_1:98436206-98436225 Msa0901650:CDS 40.0%
!! CCCATTGGCCTTATTCTTAA+TGG - chr6_1:98436270-98436289 None:intergenic 40.0%
GTAGTAGTACTAGTTCCCAT+TGG - chr6_1:98436285-98436304 None:intergenic 40.0%
! ACCAATCTGAGATAGCCAAG+AGG + chr6_1:98435308-98435327 Msa0901650:CDS 45.0%
ACCTCTTGGCTATCTCAGAT+TGG - chr6_1:98435312-98435331 None:intergenic 45.0%
! ATCTGAGATAGCCAAGAGGT+TGG + chr6_1:98435312-98435331 Msa0901650:CDS 45.0%
!!! CTGCTTTTTCTCCAACCTCT+TGG - chr6_1:98435326-98435345 None:intergenic 45.0%
AGAACACCTGTGATGTTGAC+TGG + chr6_1:98435344-98435363 Msa0901650:CDS 45.0%
! GAACACCTGTGATGTTGACT+GGG + chr6_1:98435345-98435364 Msa0901650:CDS 45.0%
ACTTTCCCAGTCAACATCAC+AGG - chr6_1:98435353-98435372 None:intergenic 45.0%
ATCGTCCGACGTCTAACATT+AGG + chr6_1:98435389-98435408 Msa0901650:CDS 45.0%
ACCAGCTATGGGAACAAAAG+TGG + chr6_1:98435673-98435692 Msa0901650:CDS 45.0%
AGAGAACATACAGATGCTGG+TGG + chr6_1:98435740-98435759 Msa0901650:CDS 45.0%
GGATACAAGAGTTTAGGAGC+TGG - chr6_1:98436170-98436189 None:intergenic 45.0%
! ACCAATCTGAGATAGCCAAG+AGG + chr6_1:98435308-98435327 Msa0901650:CDS 45.0%
ACCTCTTGGCTATCTCAGAT+TGG - chr6_1:98435312-98435331 None:intergenic 45.0%
! ATCTGAGATAGCCAAGAGGT+TGG + chr6_1:98435312-98435331 Msa0901650:CDS 45.0%
!!! CTGCTTTTTCTCCAACCTCT+TGG - chr6_1:98435326-98435345 None:intergenic 45.0%
AGAACACCTGTGATGTTGAC+TGG + chr6_1:98435344-98435363 Msa0901650:CDS 45.0%
! GAACACCTGTGATGTTGACT+GGG + chr6_1:98435345-98435364 Msa0901650:CDS 45.0%
ACTTTCCCAGTCAACATCAC+AGG - chr6_1:98435353-98435372 None:intergenic 45.0%
ATCGTCCGACGTCTAACATT+AGG + chr6_1:98435389-98435408 Msa0901650:CDS 45.0%
ACCAGCTATGGGAACAAAAG+TGG + chr6_1:98435673-98435692 Msa0901650:CDS 45.0%
AGAGAACATACAGATGCTGG+TGG + chr6_1:98435740-98435759 Msa0901650:CDS 45.0%
GGATACAAGAGTTTAGGAGC+TGG - chr6_1:98436170-98436189 None:intergenic 45.0%
TCAGCTTCCCCTCAATGTCA+TGG - chr6_1:98435228-98435247 None:intergenic 50.0%
TGACATTGAGGGGAAGCTGA+TGG + chr6_1:98435228-98435247 Msa0901650:CDS 50.0%
GCTGATGGAGAAGGTGAAGA+AGG + chr6_1:98435243-98435262 Msa0901650:CDS 50.0%
CAAAGCTCCTCAGAGAGGTT+TGG - chr6_1:98435421-98435440 None:intergenic 50.0%
! CAAACCTCTCTGAGGAGCTT+TGG + chr6_1:98435419-98435438 Msa0901650:CDS 50.0%
CTAACCAAAGCTCCTCAGAG+AGG - chr6_1:98435426-98435445 None:intergenic 50.0%
!!! GCCACTTTTGTTCCCATAGC+TGG - chr6_1:98435677-98435696 None:intergenic 50.0%
CTTCTGATCGAACGTGTGTC+TGG + chr6_1:98435916-98435935 Msa0901650:intron 50.0%
TCAGCTTCCCCTCAATGTCA+TGG - chr6_1:98435228-98435247 None:intergenic 50.0%
TGACATTGAGGGGAAGCTGA+TGG + chr6_1:98435228-98435247 Msa0901650:CDS 50.0%
GCTGATGGAGAAGGTGAAGA+AGG + chr6_1:98435243-98435262 Msa0901650:CDS 50.0%
CAAAGCTCCTCAGAGAGGTT+TGG - chr6_1:98435421-98435440 None:intergenic 50.0%
! CAAACCTCTCTGAGGAGCTT+TGG + chr6_1:98435419-98435438 Msa0901650:CDS 50.0%
CTAACCAAAGCTCCTCAGAG+AGG - chr6_1:98435426-98435445 None:intergenic 50.0%
!!! GCCACTTTTGTTCCCATAGC+TGG - chr6_1:98435677-98435696 None:intergenic 50.0%
CTTCTGATCGAACGTGTGTC+TGG + chr6_1:98435916-98435935 Msa0901650:intron 50.0%
TGAGGGGAAGCTGATGGAGA+AGG + chr6_1:98435234-98435253 Msa0901650:CDS 55.0%
TGAGGGGAAGCTGATGGAGA+AGG + chr6_1:98435234-98435253 Msa0901650:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 98434888 98436399 98434888 ID=Msa0901650;Name=Msa0901650
chr6_1 mRNA 98434888 98436399 98434888 ID=Msa0901650-mRNA-1;Parent=Msa0901650;Name=Msa0901650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=107|1|1|1|1|1|4|104|303
chr6_1 exon 98434888 98435096 98434888 ID=Msa0901650-mRNA-1:exon:17349;Parent=Msa0901650-mRNA-1
chr6_1 exon 98435217 98435440 98435217 ID=Msa0901650-mRNA-1:exon:17350;Parent=Msa0901650-mRNA-1
chr6_1 exon 98435544 98435872 98435544 ID=Msa0901650-mRNA-1:exon:17351;Parent=Msa0901650-mRNA-1
chr6_1 exon 98436039 98436399 98436039 ID=Msa0901650-mRNA-1:exon:17352;Parent=Msa0901650-mRNA-1
chr6_1 five_prime_UTR 98434888 98434994 98434888 ID=Msa0901650-mRNA-1:five_prime_utr;Parent=Msa0901650-mRNA-1
chr6_1 CDS 98434995 98435096 98434995 ID=Msa0901650-mRNA-1:cds;Parent=Msa0901650-mRNA-1
chr6_1 CDS 98435217 98435440 98435217 ID=Msa0901650-mRNA-1:cds;Parent=Msa0901650-mRNA-1
chr6_1 CDS 98435544 98435872 98435544 ID=Msa0901650-mRNA-1:cds;Parent=Msa0901650-mRNA-1
chr6_1 CDS 98436039 98436295 98436039 ID=Msa0901650-mRNA-1:cds;Parent=Msa0901650-mRNA-1
chr6_1 three_prime_UTR 98436296 98436399 98436296 ID=Msa0901650-mRNA-1:three_prime_utr;Parent=Msa0901650-mRNA-1
Gene Sequence

>Msa0901650

ATGGCAATTCCTGTGATAGATTTTAGCACTCTCAATGGTGACAAAAGAGGTGAAACTATGGCTCTTTTGCATGAAGCTTGTCAAAAATGGGGTTGCTTTCTGATTGAGAACCATGACATTGAGGGGAAGCTGATGGAGAAGGTGAAGAAGGTAATTAATAGTTACTATGAAGAAAATCTGAAGGAAAGTTTTTACCAATCTGAGATAGCCAAGAGGTTGGAGAAAAAGCAGAACACCTGTGATGTTGACTGGGAAAGTTCATTCTTCATTTGGCATCGTCCGACGTCTAACATTAGGAAAATTCCAAACCTCTCTGAGGAGCTTTGCGAAACAATGGACGAGTACATTGAAAAATTAGTTCAAGTGGCAGAGACATTATCTCAGATGATGAGTGAAAATCTTGGTTTGGAGAAAGATTACATAAAGACAGCATTTTCAGGAAGTAATAATAATGGACCAGCTATGGGAACAAAAGTGGCAAAGTACCCTGAATGTCCATATCCAGAATTGGTTAGAGGACTAAGAGAACATACAGATGCTGGTGGAATCATCCTATTGCTTCAAGATGACAAAGTACCTGGTCTTGAATTCTTCAAAGATGGAAAATGGATTGAGATACCACCTTCAAAAAACAATGCAATCTTTGTCAACACAGGTGACCAAATTGAAGTGTTGAGCAATGGTTTATACAAAAGTGTTGTGCATAGGGTGATTCCTGATAAGAATGGAAGTAGACTATCTATTGCAAGTTTCTATAATCCAATTGGTGAAGCTATTATTTCTCCAGCTCCTAAACTCTTGTATCCAAGTAATTATTGCTATGGTGACTATTTGGAGCTTTATGGAAAAACTAAGTTTGGTGATAAGGGTCCTAGATTTGAATCCATTAAGAATAAGGCCAATGGGAACTAG
Protein sequence

>Msa0901650

MAIPVIDFSTLNGDKRGETMALLHEACQKWGCFLIENHDIEGKLMEKVKKVINSYYEENLKESFYQSEIAKRLEKKQNTCDVDWESSFFIWHRPTSNIRKIPNLSEELCETMDEYIEKLVQVAETLSQMMSENLGLEKDYIKTAFSGSNNNGPAMGTKVAKYPECPYPELVRGLREHTDAGGIILLLQDDKVPGLEFFKDGKWIEIPPSKNNAIFVNTGDQIEVLSNGLYKSVVHRVIPDKNGSRLSIASFYNPIGEAIISPAPKLLYPSNYCYGDYLELYGKTKFGDKGPRFESIKNKANGN*