AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001530 MtrunA17_Chr6g0488511 97.030 303 9 0 1 303 1 303 0.0 614
Msa1001530 MtrunA17_Chr2g0289341 48.845 303 142 5 3 296 4 302 2.10e-99 295
Msa1001530 MtrunA17_Chr3g0121141 48.505 301 146 4 3 297 4 301 3.99e-99 293
Msa1001530 MtrunA17_Chr5g0439011 47.727 308 146 5 1 297 3 306 1.46e-98 292
Msa1001530 MtrunA17_Chr3g0125201 46.688 317 138 6 1 297 1 306 2.43e-90 271
Msa1001530 MtrunA17_Chr4g0006371 37.624 303 162 9 3 285 62 357 1.67e-56 186
Msa1001530 MtrunA17_Chr7g0242551 39.855 276 150 7 3 266 54 325 5.51e-55 182
Msa1001530 MtrunA17_Chr5g0437181 36.918 279 159 7 3 269 49 322 3.15e-52 175
Msa1001530 MtrunA17_Chr3g0113641 37.276 279 158 8 3 269 50 323 1.05e-50 171
Msa1001530 MtrunA17_Chr4g0075471 54.861 144 54 3 148 282 18 159 2.05e-50 164
Msa1001530 MtrunA17_Chr8g0375671 33.803 284 163 8 1 269 50 323 1.82e-44 155
Msa1001530 MtrunA17_Chr8g0375601 32.979 282 167 7 3 271 48 320 1.95e-44 155
Msa1001530 MtrunA17_Chr3g0109041 33.555 301 170 10 2 279 41 334 5.34e-44 153
Msa1001530 MtrunA17_Chr8g0375571 33.813 278 161 9 3 266 45 313 1.34e-42 150
Msa1001530 MtrunA17_Chr3g0128001 35.165 273 160 8 3 267 38 301 1.85e-42 149
Msa1001530 MtrunA17_Chr8g0345831 34.098 305 171 9 2 290 41 331 2.75e-41 146
Msa1001530 MtrunA17_Chr5g0421011 30.795 302 188 7 3 290 47 341 3.64e-41 146
Msa1001530 MtrunA17_Chr7g0239121 32.313 294 179 5 3 288 51 332 4.41e-41 145
Msa1001530 MtrunA17_Chr5g0423251 31.159 276 173 7 3 269 47 314 5.98e-41 145
Msa1001530 MtrunA17_Chr5g0412681 33.898 295 166 10 2 279 32 314 7.00e-41 145
Msa1001530 MtrunA17_Chr8g0375701 34.058 276 160 7 2 266 54 318 2.11e-40 144
Msa1001530 MtrunA17_Chr8g0365241 30.182 275 178 5 3 269 57 325 5.90e-40 143
Msa1001530 MtrunA17_Chr7g0239101 33.007 306 174 10 3 289 55 348 1.22e-39 142
Msa1001530 MtrunA17_Chr5g0421041 31.752 274 172 6 1 266 43 309 1.47e-39 142
Msa1001530 MtrunA17_Chr2g0314381 32.374 278 167 8 1 266 75 343 2.05e-39 142
Msa1001530 MtrunA17_Chr5g0412651 32.903 310 179 11 2 292 37 336 2.62e-39 141
Msa1001530 MtrunA17_Chr7g0239821 34.211 304 171 9 3 285 64 359 3.90e-39 141
Msa1001530 MtrunA17_Chr5g0412671 33.119 311 177 11 2 292 37 336 6.00e-39 140
Msa1001530 MtrunA17_Chr5g0423191 30.182 275 177 6 3 269 47 314 6.45e-39 140
Msa1001530 MtrunA17_Chr2g0311921 32.061 262 157 7 3 253 54 305 7.23e-39 140
Msa1001530 MtrunA17_Chr1g0162191 32.852 277 169 6 3 269 47 316 1.18e-38 139
Msa1001530 MtrunA17_Chr7g0239111 32.542 295 176 8 3 288 55 335 2.03e-38 139
Msa1001530 MtrunA17_Chr4g0050031 31.908 304 179 10 3 284 62 359 2.11e-38 139
Msa1001530 MtrunA17_Chr5g0426891 32.881 295 173 10 3 280 39 325 2.30e-38 138
Msa1001530 MtrunA17_Chr5g0420981 30.182 275 178 5 3 269 53 321 6.11e-38 137
Msa1001530 MtrunA17_Chr2g0314391 32.975 279 164 9 1 266 68 336 7.65e-38 137
Msa1001530 MtrunA17_Chr5g0420951 28.146 302 197 6 3 290 53 348 9.37e-38 137
Msa1001530 MtrunA17_Chr3g0145171 29.455 275 180 5 1 266 50 319 1.43e-37 136
Msa1001530 MtrunA17_Chr8g0371931 33.091 275 159 10 3 262 39 303 1.52e-36 134
Msa1001530 MtrunA17_Chr3g0114861 33.333 282 159 9 23 286 56 326 1.71e-36 133
Msa1001530 MtrunA17_Chr2g0314401 30.824 279 170 8 1 266 49 317 1.79e-36 133
Msa1001530 MtrunA17_Chr3g0087031 32.500 280 162 8 1 266 58 324 2.61e-36 133
Msa1001530 MtrunA17_Chr5g0421101 30.515 272 174 6 3 266 47 311 5.51e-36 132
Msa1001530 MtrunA17_Chr5g0423221 29.412 272 178 6 3 266 71 336 8.09e-36 132
Msa1001530 MtrunA17_Chr5g0424201 33.929 280 159 8 1 266 42 309 8.79e-36 131
Msa1001530 MtrunA17_Chr5g0420941 29.276 304 190 8 3 290 45 339 9.31e-36 131
Msa1001530 MtrunA17_Chr8g0370711 28.929 280 171 6 3 266 52 319 9.88e-36 131
Msa1001530 MtrunA17_Chr8g0336751 30.418 263 163 9 1 253 92 344 1.19e-35 132
Msa1001530 MtrunA17_Chr5g0423201 29.670 273 176 6 3 266 47 312 2.57e-35 130
Msa1001530 MtrunA17_Chr5g0420901 30.605 281 172 7 3 271 46 315 3.31e-35 130
Msa1001530 MtrunA17_Chr2g0311741 31.655 278 154 9 1 260 25 284 3.62e-35 129
Msa1001530 MtrunA17_Chr2g0311681 27.957 279 181 8 1 269 61 329 4.23e-35 130
Msa1001530 MtrunA17_Chr1g0187831 30.268 261 160 10 3 252 70 319 5.41e-35 130
Msa1001530 MtrunA17_Chr2g0311761 29.924 264 158 6 3 252 68 318 6.23e-35 130
Msa1001530 MtrunA17_Chr2g0296371 29.582 311 183 9 3 289 50 348 7.93e-35 129
Msa1001530 MtrunA17_Chr2g0319491 29.167 288 180 9 3 279 33 307 1.68e-34 127
Msa1001530 MtrunA17_Chr2g0311701 27.099 262 171 8 1 252 67 318 2.66e-34 128
Msa1001530 MtrunA17_Chr4g0064781 29.771 262 168 5 1 254 48 301 2.77e-34 127
Msa1001530 MtrunA17_Chr2g0311691 28.137 263 167 9 1 252 61 312 3.87e-34 127
Msa1001530 MtrunA17_Chr8g0371921 32.727 275 160 10 3 262 39 303 3.89e-34 127
Msa1001530 MtrunA17_Chr3g0126741 32.131 305 181 10 2 289 58 353 4.78e-34 127
Msa1001530 MtrunA17_Chr8g0354261 29.316 307 182 10 1 283 66 361 4.88e-34 127
Msa1001530 MtrunA17_Chr8g0370721 29.236 301 189 8 3 285 52 346 6.58e-34 127
Msa1001530 MtrunA17_Chr7g0265221 29.874 318 199 8 1 297 65 379 6.61e-34 127
Msa1001530 MtrunA17_Chr5g0423211 30.392 306 186 8 3 290 47 343 9.28e-34 126
Msa1001530 MtrunA17_Chr5g0424211 31.295 278 171 8 1 266 40 309 1.79e-33 125
Msa1001530 MtrunA17_Chr8g0375681 32.400 250 141 7 37 271 17 253 2.48e-33 124
Msa1001530 MtrunA17_Chr7g0239091 32.653 294 181 8 3 289 160 443 2.61e-33 127
Msa1001530 MtrunA17_Chr5g0398291 29.893 281 173 9 3 266 47 320 3.81e-33 125
Msa1001530 MtrunA17_Chr2g0311711 28.626 262 167 8 1 252 65 316 4.34e-33 125
Msa1001530 MtrunA17_Chr5g0405411 32.155 283 151 10 3 262 39 303 4.67e-33 124
Msa1001530 MtrunA17_Chr8g0364471 29.057 265 162 8 1 252 65 316 6.56e-33 124
Msa1001530 MtrunA17_Chr7g0232161 33.333 243 145 6 3 236 60 294 7.78e-33 123
Msa1001530 MtrunA17_Chr8g0336851 30.189 265 160 9 2 253 59 311 1.01e-32 124
Msa1001530 MtrunA17_Chr7g0239071 31.922 307 177 12 8 302 6 292 1.88e-32 122
Msa1001530 MtrunA17_Chr2g0311831 29.167 264 159 7 3 252 68 317 1.93e-32 123
Msa1001530 MtrunA17_Chr1g0187811 27.574 272 176 9 1 261 186 447 2.00e-32 125
Msa1001530 MtrunA17_Chr1g0148771 30.435 276 160 10 2 263 62 319 2.03e-32 123
Msa1001530 MtrunA17_Chr7g0235951 28.626 262 167 9 1 252 65 316 5.69e-32 122
Msa1001530 MtrunA17_Chr8g0354241 28.223 287 180 9 1 271 66 342 6.21e-32 122
Msa1001530 MtrunA17_Chr1g0187821 28.897 263 165 10 1 252 65 316 7.92e-32 121
Msa1001530 MtrunA17_Chr4g0045411 28.912 294 176 9 2 271 29 313 8.41e-32 121
Msa1001530 MtrunA17_Chr3g0145181 28.477 302 189 9 1 283 47 340 1.05e-31 120
Msa1001530 MtrunA17_Chr1g0167911 30.690 290 165 11 3 280 54 319 1.05e-31 120
Msa1001530 MtrunA17_Chr7g0266651 32.042 284 164 11 2 269 58 328 1.15e-31 121
Msa1001530 MtrunA17_Chr5g0421091 28.929 280 175 8 3 269 45 313 1.20e-31 120
Msa1001530 MtrunA17_Chr2g0332191 28.975 283 172 9 3 270 52 320 1.39e-31 120
Msa1001530 MtrunA17_Chr8g0336781 29.008 262 166 8 2 252 94 346 2.17e-31 120
Msa1001530 MtrunA17_Chr5g0420721 33.684 190 118 3 82 269 33 216 6.93e-31 116
Msa1001530 MtrunA17_Chr3g0102041 30.576 278 162 9 3 262 39 303 7.45e-31 118
Msa1001530 MtrunA17_Chr1g0179801 29.492 295 182 8 1 277 64 350 1.53e-30 118
Msa1001530 MtrunA17_Chr7g0225881 30.104 289 169 13 3 280 67 333 2.78e-30 117
Msa1001530 MtrunA17_Chr8g0336861 28.517 263 168 8 2 253 59 312 3.04e-30 117
Msa1001530 MtrunA17_Chr7g0220001 29.355 310 187 11 2 295 40 333 4.17e-30 116
Msa1001530 MtrunA17_Chr3g0145201 28.477 302 189 9 1 283 682 975 6.61e-30 119
Msa1001530 MtrunA17_Chr4g0066121 27.170 265 167 9 2 252 59 311 7.04e-30 116
Msa1001530 MtrunA17_Chr8g0336631 28.929 280 173 10 2 269 59 324 1.14e-29 115
Msa1001530 MtrunA17_Chr4g0075431 37.288 177 96 4 3 167 4 177 1.70e-29 110
Msa1001530 MtrunA17_Chr2g0311861 30.952 252 150 8 3 252 64 293 2.41e-29 114
Msa1001530 MtrunA17_Chr1g0184241 29.502 261 164 8 3 254 69 318 2.62e-29 114
Msa1001530 MtrunA17_Chr6g0474391 29.795 292 164 11 1 266 62 338 7.22e-29 114
Msa1001530 MtrunA17_Chr8g0348081 28.244 262 167 8 2 252 59 310 1.04e-28 113
Msa1001530 MtrunA17_Chr8g0336761 29.181 281 170 10 2 269 59 323 1.24e-28 112
Msa1001530 MtrunA17_Chr4g0045451 26.733 303 176 8 2 271 25 314 1.40e-28 112
Msa1001530 MtrunA17_Chr6g0455481 27.273 308 199 9 2 296 41 336 1.85e-28 112
Msa1001530 MtrunA17_Chr7g0250511 29.530 298 180 11 2 280 48 334 2.22e-28 112
Msa1001530 MtrunA17_Chr1g0184101 28.428 299 187 9 3 284 38 326 2.99e-28 111
Msa1001530 MtrunA17_Chr4g0055591 27.027 259 168 8 2 252 60 305 5.29e-28 111
Msa1001530 MtrunA17_Chr7g0236011 29.167 264 163 9 1 252 65 316 1.61e-27 110
Msa1001530 MtrunA17_Chr7g0247991 29.924 264 161 9 1 252 65 316 2.40e-27 109
Msa1001530 MtrunA17_Chr8g0335411 30.682 264 159 9 1 252 65 316 2.47e-27 109
Msa1001530 MtrunA17_Chr1g0204181 29.795 292 164 11 1 266 57 333 2.63e-27 109
Msa1001530 MtrunA17_Chr1g0167951 28.846 260 168 8 2 253 52 302 4.17e-27 108
Msa1001530 MtrunA17_Chr4g0045441 25.484 310 181 9 4 278 33 327 4.39e-27 108
Msa1001530 MtrunA17_Chr2g0311631 29.231 325 181 13 3 296 55 361 4.51e-27 108
Msa1001530 MtrunA17_Chr1g0162321 25.705 319 195 8 3 286 69 380 6.13e-27 108
Msa1001530 MtrunA17_Chr7g0265351 27.673 318 189 13 2 296 38 337 1.01e-26 107
Msa1001530 MtrunA17_Chr1g0162351 26.606 327 182 10 3 286 69 380 1.09e-26 108
Msa1001530 MtrunA17_Chr1g0184161 26.909 275 184 6 2 267 37 303 1.51e-26 107
Msa1001530 MtrunA17_Chr1g0184151 28.391 317 173 13 2 288 37 329 1.64e-26 106
Msa1001530 MtrunA17_Chr8g0351101 25.472 318 195 10 1 289 52 356 1.85e-26 107
Msa1001530 MtrunA17_Chr1g0184111 27.000 300 197 8 2 286 36 328 2.32e-26 106
Msa1001530 MtrunA17_Chr7g0220011 26.214 309 198 10 2 295 38 331 2.35e-26 106
Msa1001530 MtrunA17_Chr7g0235981 30.769 234 139 8 35 258 56 276 8.97e-26 104
Msa1001530 MtrunA17_Chr6g0472861 27.757 263 164 12 3 252 70 319 1.91e-25 104
Msa1001530 MtrunA17_Chr3g0092531 29.431 299 186 9 3 285 6 295 2.31e-25 103
Msa1001530 MtrunA17_Chr3g0093741 27.157 313 197 12 2 296 55 354 3.81e-25 103
Msa1001530 MtrunA17_Chr1g0184121 26.909 275 183 7 2 266 36 302 4.82e-25 102
Msa1001530 MtrunA17_Chr4g0066991 27.451 255 159 7 1 252 65 296 4.94e-25 102
Msa1001530 MtrunA17_Chr3g0093761 27.737 274 177 9 2 266 55 316 1.48e-24 101
Msa1001530 MtrunA17_Chr5g0394071 30.000 170 112 3 108 277 1 163 1.76e-24 97.8
Msa1001530 MtrunA17_Chr3g0105281 28.676 272 162 9 3 260 34 287 2.56e-24 100
Msa1001530 MtrunA17_Chr1g0167961 29.119 261 167 9 2 253 68 319 3.28e-24 100
Msa1001530 MtrunA17_Chr4g0064771 33.898 177 103 4 110 277 27 198 5.11e-24 97.1
Msa1001530 MtrunA17_Chr3g0093751 27.273 275 178 8 2 266 55 317 8.57e-24 99.4
Msa1001530 MtrunA17_Chr4g0045471 25.000 316 186 9 2 278 25 328 1.27e-23 99.0
Msa1001530 MtrunA17_Chr5g0420881 37.313 134 77 2 162 289 4 136 1.33e-23 94.4
Msa1001530 MtrunA17_Chr1g0161041 26.950 282 171 10 3 267 96 359 2.04e-23 99.0
Msa1001530 MtrunA17_Chr1g0162361 26.667 285 178 9 3 266 27 301 2.94e-23 97.8
Msa1001530 MtrunA17_Chr4g0011311 26.180 233 154 7 1 224 65 288 3.49e-23 97.1
Msa1001530 MtrunA17_Chr3g0114871 31.707 246 146 10 1 234 40 275 3.72e-23 96.3
Msa1001530 MtrunA17_Chr4g0045431 27.372 274 165 10 3 249 26 292 1.90e-22 95.9
Msa1001530 MtrunA17_Chr8g0384481 26.198 313 195 13 1 288 57 358 1.92e-22 95.9
Msa1001530 MtrunA17_Chr3g0126761 36.842 190 109 6 105 288 39 223 2.11e-22 93.6
Msa1001530 MtrunA17_Chr2g0314371 27.372 274 150 10 1 238 50 310 2.68e-22 95.1
Msa1001530 MtrunA17_Chr7g0233661 38.333 120 72 2 158 277 20 137 2.14e-21 88.6
Msa1001530 MtrunA17_Chr8g0384461 24.912 285 173 11 1 260 45 313 2.18e-21 92.8
Msa1001530 MtrunA17_Chr3g0130391 26.573 286 175 12 4 266 67 340 2.33e-21 93.2
Msa1001530 MtrunA17_Chr1g0191201 24.460 278 185 9 4 263 54 324 2.90e-21 92.8
Msa1001530 MtrunA17_Chr2g0285931 25.442 283 180 9 2 266 27 296 3.04e-21 92.0
Msa1001530 MtrunA17_Chr4g0037611 33.750 160 98 4 119 277 1 153 8.31e-21 87.8
Msa1001530 MtrunA17_Chr3g0125421 26.774 310 184 13 1 280 34 330 1.26e-20 90.9
Msa1001530 MtrunA17_Chr1g0161111 27.333 300 192 11 3 289 132 418 3.69e-20 90.1
Msa1001530 MtrunA17_Chr1g0167931 28.235 255 138 8 2 253 53 265 4.24e-20 88.6
Msa1001530 MtrunA17_Chr1g0161081 31.159 276 167 12 3 267 73 336 1.09e-19 88.2
Msa1001530 MtrunA17_Chr8g0336801 42.391 92 51 2 162 253 14 103 1.63e-19 83.6
Msa1001530 MtrunA17_Chr4g0045461 26.460 291 181 7 2 266 25 308 2.12e-19 87.4
Msa1001530 MtrunA17_Chr8g0358941 27.758 281 175 11 3 266 27 296 3.72e-19 86.3
Msa1001530 MtrunA17_Chr2g0313111 23.906 297 207 8 2 289 27 313 6.46e-19 85.5
Msa1001530 MtrunA17_Chr5g0407781 26.688 311 162 11 2 280 4 280 1.38e-18 84.3
Msa1001530 MtrunA17_Chr1g0158011 33.508 191 108 9 108 287 69 251 2.63e-18 82.8
Msa1001530 MtrunA17_Chr8g0362741 25.820 244 143 9 1 234 65 280 5.06e-18 82.4
Msa1001530 MtrunA17_Chr4g0004071 27.740 292 158 10 3 266 9 275 8.37e-18 82.0
Msa1001530 MtrunA17_Chr4g0068891 25.000 308 194 12 3 288 20 312 2.52e-17 80.9
Msa1001530 MtrunA17_Chr1g0170631 32.639 144 91 2 110 253 4 141 7.71e-17 77.4
Msa1001530 MtrunA17_Chr4g0053251 25.862 290 179 10 2 262 7 289 9.90e-17 79.3
Msa1001530 MtrunA17_Chr4g0055911 25.448 279 180 9 1 260 7 276 1.04e-16 79.3
Msa1001530 MtrunA17_Chr4g0004061 26.168 321 181 11 3 292 9 304 1.12e-16 79.0
Msa1001530 MtrunA17_Chr6g0486831 26.045 311 184 12 5 278 20 321 6.37e-16 77.0
Msa1001530 MtrunA17_Chr3g0092581 30.857 175 105 6 119 285 1 167 1.54e-15 73.6
Msa1001530 MtrunA17_Chr4g0052251 25.260 289 171 11 2 266 28 295 1.65e-15 75.9
Msa1001530 MtrunA17_Chr8g0336871 34.559 136 72 5 120 253 1 121 3.21e-15 72.4
Msa1001530 MtrunA17_Chr8g0389941 27.875 287 168 13 6 264 37 312 3.44e-15 75.1
Msa1001530 MtrunA17_Chr8g0364171 33.333 111 67 3 114 224 23 126 2.14e-14 69.3
Msa1001530 MtrunA17_Chr1g0158021 26.415 212 140 7 3 206 49 252 2.57e-14 71.6
Msa1001530 MtrunA17_Chr4g0055871 24.549 277 176 11 3 260 9 271 2.70e-13 69.3
Msa1001530 MtrunA17_Chr4g0009561 24.601 313 193 15 3 285 7 306 2.11e-12 66.6
Msa1001530 MtrunA17_Chr8g0375581 43.077 65 36 1 156 220 22 85 3.15e-12 61.6
Msa1001530 MtrunA17_Chr2g0319521 28.333 120 76 4 108 224 12 124 1.12e-11 61.6
Msa1001530 MtrunA17_Chr2g0293931 26.471 204 128 10 110 298 8 204 1.66e-11 62.8
Msa1001530 MtrunA17_Chr7g0256741 26.131 199 135 4 102 294 119 311 1.76e-11 63.9
Msa1001530 MtrunA17_Chr1g0158031 32.143 168 94 9 121 279 3 159 7.64e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001530 AT2G19590.1 69.307 303 90 2 1 303 9 308 2.36e-155 436
Msa1001530 AT2G19590.2 70.111 271 78 2 33 303 26 293 1.47e-137 391
Msa1001530 AT1G62380.1 47.712 306 150 5 1 300 5 306 1.51e-100 298
Msa1001530 AT1G12010.1 47.039 304 151 5 1 298 5 304 2.28e-99 295
Msa1001530 AT1G05010.1 45.307 309 152 6 2 297 3 307 3.16e-92 277
Msa1001530 AT1G77330.1 45.541 314 147 8 1 298 1 306 1.01e-82 252
Msa1001530 AT2G38240.1 35.036 274 165 5 1 266 46 314 3.08e-49 167
Msa1001530 AT5G05600.1 36.594 276 158 7 3 266 62 332 3.59e-49 167
Msa1001530 AT3G55970.1 33.574 277 169 6 2 266 51 324 2.70e-47 162
Msa1001530 AT3G11180.2 34.182 275 162 6 3 266 95 361 4.32e-44 155
Msa1001530 AT3G11180.1 33.333 309 178 9 3 295 95 391 4.70e-44 155
Msa1001530 AT4G10490.1 33.555 301 177 9 2 286 41 334 9.32e-44 153
Msa1001530 AT4G16330.2 31.475 305 177 9 2 291 66 353 6.14e-43 151
Msa1001530 AT5G08640.2 33.898 295 165 10 2 277 42 325 1.70e-40 144
Msa1001530 AT5G08640.1 33.898 295 165 10 2 277 42 325 1.70e-40 144
Msa1001530 AT5G24530.1 32.353 272 167 8 3 266 38 300 6.37e-40 142
Msa1001530 AT4G10500.1 34.066 273 165 7 2 266 43 308 1.85e-39 142
Msa1001530 AT1G78550.1 30.070 286 173 6 3 273 53 326 3.66e-38 138
Msa1001530 AT5G20550.1 31.884 276 168 5 1 263 43 311 6.60e-38 137
Msa1001530 AT5G20400.1 30.897 301 181 9 1 283 43 334 1.51e-37 136
Msa1001530 AT1G49390.1 31.159 276 175 5 1 266 43 313 1.01e-36 134
Msa1001530 AT5G05600.2 34.615 234 136 7 3 224 62 290 8.36e-36 130
Msa1001530 AT1G17010.1 31.786 280 163 8 3 266 54 321 9.46e-36 132
Msa1001530 AT3G51240.1 32.727 275 160 10 3 262 38 302 1.01e-35 132
Msa1001530 AT4G16330.1 34.956 226 131 6 70 291 34 247 2.64e-35 128
Msa1001530 AT1G15550.1 30.605 281 167 9 3 269 57 323 6.65e-35 130
Msa1001530 AT1G17020.1 31.227 269 158 8 1 253 51 308 1.76e-34 129
Msa1001530 AT5G43450.1 27.586 261 171 7 1 253 59 309 1.84e-33 126
Msa1001530 AT4G25300.1 29.963 267 159 8 3 253 52 306 2.05e-33 125
Msa1001530 AT2G30840.1 29.682 283 161 11 1 266 55 316 4.85e-33 125
Msa1001530 AT3G55970.2 30.213 235 149 6 2 224 51 282 7.77e-33 123
Msa1001530 AT5G54000.2 29.964 277 169 7 1 262 44 310 8.34e-33 124
Msa1001530 AT5G63590.1 32.313 294 174 10 1 277 12 297 2.39e-32 122
Msa1001530 AT1G78550.2 29.070 258 156 6 31 273 3 248 4.16e-32 120
Msa1001530 AT5G59540.1 28.358 268 164 8 1 253 59 313 5.03e-32 122
Msa1001530 AT4G22880.1 29.181 281 175 9 3 266 47 320 9.66e-32 121
Msa1001530 AT4G22880.2 29.181 281 175 9 3 266 47 320 9.66e-32 121
Msa1001530 AT4G22880.3 29.181 281 175 9 3 266 47 320 9.66e-32 121
Msa1001530 AT4G25310.1 31.667 240 140 7 26 253 76 303 1.03e-31 121
Msa1001530 AT2G30830.1 31.835 267 154 11 1 252 52 305 1.12e-31 121
Msa1001530 AT5G59530.1 29.278 263 169 7 1 253 56 311 1.59e-31 121
Msa1001530 AT1G06620.1 29.740 269 157 10 1 253 60 312 4.95e-31 119
Msa1001530 AT1G80340.1 29.433 282 171 7 2 269 49 316 1.45e-30 118
Msa1001530 AT2G36690.2 26.962 293 187 9 1 277 59 340 1.51e-30 118
Msa1001530 AT2G36690.1 26.962 293 187 9 1 277 59 340 1.51e-30 118
Msa1001530 AT1G49390.2 30.252 238 153 4 37 266 2 234 2.93e-30 115
Msa1001530 AT3G21420.1 30.341 323 185 11 3 298 55 364 6.19e-30 116
Msa1001530 AT4G21200.1 29.043 303 192 10 3 293 42 333 7.90e-30 115
Msa1001530 AT2G30840.3 29.329 283 156 12 1 266 55 310 8.99e-30 116
Msa1001530 AT1G03410.2 28.723 282 173 12 1 269 55 321 1.22e-29 115
Msa1001530 AT3G13610.1 29.514 288 156 12 2 266 61 324 1.84e-29 115
Msa1001530 AT1G03410.1 28.723 282 173 12 1 269 92 358 2.04e-29 115
Msa1001530 AT5G07480.1 32.090 268 157 10 3 253 44 303 3.04e-29 114
Msa1001530 AT5G07200.1 28.276 290 172 8 1 266 56 333 4.25e-29 114
Msa1001530 AT1G04350.1 28.090 267 163 11 1 253 56 307 6.42e-29 114
Msa1001530 AT1G06650.2 26.882 279 180 10 2 269 63 328 7.68e-29 114
Msa1001530 AT3G12900.1 28.013 307 190 11 6 293 59 353 1.47e-28 112
Msa1001530 AT3G51240.2 38.043 184 103 6 83 262 42 218 1.92e-28 110
Msa1001530 AT5G63600.1 27.875 287 189 7 3 279 33 311 5.79e-28 110
Msa1001530 AT5G43440.1 25.670 261 174 8 1 251 60 310 5.89e-28 111
Msa1001530 AT2G44800.1 28.904 301 190 9 2 286 51 343 7.01e-28 111
Msa1001530 AT1G60980.1 26.462 325 182 13 1 288 55 359 7.47e-28 111
Msa1001530 AT1G04380.1 26.996 263 169 9 1 253 43 292 9.31e-28 110
Msa1001530 AT3G60290.1 29.874 318 191 13 3 301 52 356 1.52e-27 110
Msa1001530 AT5G63600.2 28.125 288 188 8 3 279 33 312 3.96e-27 108
Msa1001530 AT1G55290.1 30.496 282 153 12 2 262 61 320 7.02e-27 108
Msa1001530 AT3G61400.1 28.058 278 160 10 2 255 59 320 1.70e-26 107
Msa1001530 AT5G54000.1 29.707 239 145 6 37 262 2 230 1.83e-26 105
Msa1001530 AT1G50960.1 29.078 282 177 9 1 272 38 306 2.00e-26 106
Msa1001530 AT1G06645.1 25.641 273 164 10 23 283 100 345 2.18e-26 107
Msa1001530 AT3G19010.1 28.197 305 162 10 3 271 28 311 5.01e-26 105
Msa1001530 AT3G19010.4 28.197 305 162 10 3 271 28 311 5.01e-26 105
Msa1001530 AT5G51810.1 25.397 315 193 11 1 288 61 360 7.57e-26 105
Msa1001530 AT1G03400.1 27.985 268 166 10 1 258 54 304 1.03e-25 105
Msa1001530 AT2G25450.1 28.082 292 177 11 1 280 53 323 1.33e-25 105
Msa1001530 AT1G80330.1 28.852 305 175 13 2 280 48 336 1.76e-25 104
Msa1001530 AT5G63595.1 27.925 265 163 7 4 264 26 266 2.10e-25 102
Msa1001530 AT1G06640.1 24.643 280 185 10 2 269 63 328 3.17e-25 103
Msa1001530 AT2G30840.2 28.870 239 140 9 1 223 55 279 8.60e-25 101
Msa1001530 AT1G44090.1 26.855 283 183 10 1 266 61 336 1.92e-24 102
Msa1001530 AT4G25420.1 25.392 319 192 11 1 288 59 362 2.08e-24 102
Msa1001530 AT5G43450.2 25.974 231 153 7 1 223 59 279 2.64e-24 100
Msa1001530 AT3G19000.1 28.763 299 182 9 3 277 32 323 3.07e-24 101
Msa1001530 AT1G06620.2 28.870 239 138 10 2 224 61 283 1.21e-22 95.5
Msa1001530 AT4G21690.1 26.882 279 173 10 3 262 47 313 1.37e-22 96.7
Msa1001530 AT5G59540.2 27.197 239 146 8 1 224 59 284 1.44e-22 95.5
Msa1001530 AT1G30040.1 25.974 308 193 13 2 288 30 323 2.89e-22 95.5
Msa1001530 AT1G06650.1 27.155 232 150 8 2 223 63 285 5.04e-22 94.4
Msa1001530 AT4G25300.2 32.639 144 92 2 110 253 74 212 5.87e-22 93.2
Msa1001530 AT5G07480.2 36.667 150 82 5 110 253 52 194 2.03e-21 91.3
Msa1001530 AT3G19010.3 27.333 300 177 10 3 286 28 302 4.04e-21 92.0
Msa1001530 AT1G03400.2 26.840 231 147 7 1 224 54 269 6.86e-21 92.0
Msa1001530 AT4G25310.2 27.984 243 117 8 26 253 76 275 1.07e-20 90.9
Msa1001530 AT5G43440.2 24.576 236 158 8 1 226 60 285 2.22e-20 89.4
Msa1001530 AT5G12270.1 28.750 320 186 15 3 297 56 358 3.77e-20 89.7
Msa1001530 AT1G04380.2 25.641 234 155 8 1 226 43 265 1.75e-19 86.7
Msa1001530 AT3G61400.2 28.112 249 134 10 2 224 59 288 2.37e-19 86.7
Msa1001530 AT5G43935.1 27.338 278 159 11 3 267 19 266 4.96e-19 85.9
Msa1001530 AT3G19000.2 27.016 248 145 9 3 224 32 269 7.28e-19 85.1
Msa1001530 AT3G19010.2 27.799 259 130 10 3 225 28 265 1.01e-18 84.7
Msa1001530 AT3G47190.1 28.276 290 137 12 3 254 32 288 1.85e-18 84.7
Msa1001530 AT1G06640.2 24.359 234 156 8 2 224 63 286 1.85e-18 84.7
Msa1001530 AT2G34555.1 25.890 309 193 15 1 288 25 318 2.14e-18 84.3
Msa1001530 AT1G06640.3 24.783 230 152 8 2 220 63 282 2.53e-18 83.6
Msa1001530 AT1G78440.1 25.182 274 181 9 3 262 18 281 8.32e-17 80.1
Msa1001530 AT5G51810.2 25.498 251 153 9 1 231 61 297 9.61e-17 79.3
Msa1001530 AT5G63580.2 28.326 233 147 8 2 224 18 240 1.83e-16 77.8
Msa1001530 AT3G50210.4 26.316 304 184 10 2 270 7 305 4.95e-16 77.8
Msa1001530 AT3G50210.1 26.316 304 184 10 2 270 7 305 4.95e-16 77.8
Msa1001530 AT3G50210.3 26.316 304 184 10 2 270 7 305 4.95e-16 77.8
Msa1001530 AT5G63580.1 28.139 231 146 8 2 222 18 238 6.19e-16 76.3
Msa1001530 AT3G46490.1 29.066 289 170 12 11 271 22 303 8.43e-16 77.0
Msa1001530 AT3G46500.5 28.179 291 178 11 2 271 16 296 9.70e-16 76.6
Msa1001530 AT3G49620.1 28.070 285 178 9 3 262 34 316 1.24e-15 76.6
Msa1001530 AT1G02400.1 27.036 307 171 13 3 277 24 309 1.77e-15 76.3
Msa1001530 AT4G25420.2 24.597 248 149 9 1 224 59 292 5.49e-15 74.3
Msa1001530 AT4G03070.1 26.433 314 173 13 3 281 14 304 2.58e-14 72.8
Msa1001530 AT5G51310.1 25.000 332 206 16 1 299 3 324 3.26e-14 72.4
Msa1001530 AT3G49630.1 27.055 292 172 11 3 262 9 291 3.33e-14 72.4
Msa1001530 AT3G49630.3 27.239 268 164 10 17 262 29 287 7.18e-14 71.2
Msa1001530 AT3G46490.2 28.627 255 150 10 11 238 22 271 1.13e-13 70.9
Msa1001530 AT1G14120.2 23.549 293 186 8 2 281 7 274 3.88e-13 69.3
Msa1001530 AT1G14120.1 23.549 293 186 8 2 281 7 274 3.88e-13 69.3
Msa1001530 AT1G14120.3 23.549 293 186 8 2 281 7 274 3.88e-13 69.3
Msa1001530 AT1G47990.1 23.154 298 193 10 3 277 15 299 4.63e-13 68.9
Msa1001530 AT3G50210.2 30.120 166 106 4 102 262 53 213 5.64e-13 67.8
Msa1001530 AT4G16765.3 31.579 152 91 7 110 254 61 206 6.92e-13 67.4
Msa1001530 AT4G16765.6 31.579 152 91 7 110 254 61 206 8.56e-13 67.4
Msa1001530 AT4G16765.1 31.579 152 91 7 110 254 61 206 8.56e-13 67.4
Msa1001530 AT4G16765.2 31.579 152 91 7 110 254 61 206 8.56e-13 67.4
Msa1001530 AT1G35190.1 26.871 294 176 13 1 264 7 291 2.78e-12 66.6
Msa1001530 AT3G49630.2 30.675 163 104 5 102 262 63 218 2.83e-12 65.9
Msa1001530 AT1G28030.1 27.835 291 164 13 1 265 11 281 7.68e-12 65.5
Msa1001530 AT3G46500.4 31.138 167 101 7 112 271 1 160 2.51e-11 62.0
Msa1001530 AT4G22870.1 35.577 104 51 6 192 283 2 101 2.84e-11 60.1
Msa1001530 AT1G30040.2 23.950 238 152 12 2 224 30 253 3.45e-11 63.2
Msa1001530 AT3G46500.3 28.796 191 117 7 78 255 22 206 9.91e-11 61.2

Find 70 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACTATTTGGAGCTTTA+TGG 0.097365 6_4:+85345331 Msa1001530:CDS
CCCATTGGCCTTATTCTTAA+TGG 0.120984 6_4:-85345392 None:intergenic
AATTCTTCAAAGATGGAAAA+TGG 0.189069 6_4:+85344929 Msa1001530:CDS
CTTAGTCCTCTAACCAATTC+TGG 0.204359 6_4:-85344844 None:intergenic
TTATTGCTATGGTGACTATT+TGG 0.248128 6_4:+85345321 Msa1001530:CDS
ATTTGAATCCATTAAGAATA+AGG 0.271542 6_4:+85345384 Msa1001530:CDS
TTCTTAATGGATTCAAATCT+AGG 0.286214 6_4:-85345379 None:intergenic
AAGTAGAAATTAAGAGTATT+AGG 0.300397 6_4:-85345457 None:intergenic
AGTCTACTTCCATTCTTATC+AGG 0.301445 6_4:-85345223 None:intergenic
CATTGCTCAACACTTCAATT+TGG 0.304728 6_4:-85345168 None:intergenic
CCTCTAACCAATTCTGGATA+TGG 0.311179 6_4:-85344838 None:intergenic
GGGAAAGTTCATTCTTCATT+TGG 0.325106 6_4:+85344490 Msa1001530:CDS
GTTTGATGAATTGATATAAC+TGG 0.327640 6_4:-85344050 None:intergenic
GAAATAATAGCTTCACCAAT+TGG 0.345738 6_4:-85345268 None:intergenic
AATTCTGGATATGGACATTC+AGG 0.350390 6_4:-85344829 None:intergenic
TTACTTGGATACGAGAGTTT+AGG 0.355612 6_4:-85345298 None:intergenic
GGTCTTGAATTCTTCAAAGA+TGG 0.377617 6_4:+85344922 Msa1001530:CDS
CTTTGTCATCTTGAAGCAAT+AGG 0.381986 6_4:-85344894 None:intergenic
CAAACCTCTCTGAGGAGCTT+TGG 0.383939 6_4:+85344544 Msa1001530:CDS
ACAAATACTTATCATAGATA+TGG 0.398601 6_4:+85344101 Msa1001530:exon
GCAAGTTTCTATAATCCAAT+TGG 0.413990 6_4:+85345253 Msa1001530:CDS
CCATATCCAGAATTGGTTAG+AGG 0.423481 6_4:+85344838 Msa1001530:CDS
AAAACTAAGTTTGGTGATAA+GGG 0.425129 6_4:+85345355 Msa1001530:CDS
TAATAATAATGGACCAGCTA+TGG 0.433603 6_4:+85344786 Msa1001530:CDS
TGAATGTCCATATCCAGAAT+TGG 0.449791 6_4:+85344831 Msa1001530:CDS
CAAAGCTCCTCAGAGAGGTT+TGG 0.450378 6_4:-85344543 None:intergenic
GATGAGTGAAAATCTTGGTT+TGG 0.451151 6_4:+85344729 Msa1001530:CDS
ATCGTCCGACGTCTAACATT+AGG 0.472104 6_4:+85344514 Msa1001530:CDS
ATACAAAAGTGTTGTGCATA+GGG 0.481503 6_4:+85345195 Msa1001530:CDS
AGAAAGGAAAATGTAACATC+AGG 0.487333 6_4:+85345497 Msa1001530:three_prime_UTR
TGACAAAAGAGGTGAAACTA+TGG 0.492889 6_4:+85344158 Msa1001530:CDS
GCTGATGGAGAAGGTGAAGA+AGG 0.495499 6_4:+85344368 Msa1001530:CDS
ATTGAGAACCATGACATTGA+GGG 0.497057 6_4:+85344342 Msa1001530:CDS
TATACAAAAGTGTTGTGCAT+AGG 0.502505 6_4:+85345194 Msa1001530:CDS
CCATTAAGAATAAGGCCAAT+GGG 0.508737 6_4:+85345392 Msa1001530:CDS
ACCTCTTGGCTATCTCAGAT+TGG 0.513980 6_4:-85344434 None:intergenic
CAGATGATGAGTGAAAATCT+TGG 0.514187 6_4:+85344724 Msa1001530:CDS
TATCCAAGTAATTATTGCTA+TGG 0.517995 6_4:+85345310 Msa1001530:CDS
GATTGAGAACCATGACATTG+AGG 0.522032 6_4:+85344341 Msa1001530:intron
TCCATTAAGAATAAGGCCAA+TGG 0.527861 6_4:+85345391 Msa1001530:CDS
AGAACACCTGTGATGTTGAC+TGG 0.531587 6_4:+85344469 Msa1001530:CDS
CTAAGAGAACATACAGATGC+TGG 0.535915 6_4:+85344862 Msa1001530:CDS
TCACCATAGCAATAATTACT+TGG 0.538943 6_4:-85345313 None:intergenic
CTTCAAGATGACAAAGTACC+TGG 0.540243 6_4:+85344901 Msa1001530:CDS
AATAATAATGGACCAGCTAT+GGG 0.543717 6_4:+85344787 Msa1001530:CDS
TCAGCTTCCCCTCAATGTCA+TGG 0.554265 6_4:-85344350 None:intergenic
TGACATTGAGGGGAAGCTGA+TGG 0.556135 6_4:+85344353 Msa1001530:CDS
ATCTGAGATAGCCAAGAGGT+TGG 0.561844 6_4:+85344437 Msa1001530:CDS
CAAATTGAAGTGTTGAGCAA+TGG 0.562361 6_4:+85345169 Msa1001530:CDS
ATGTTACAAATAGCCAAGAA+AGG 0.562986 6_4:+85345481 Msa1001530:three_prime_UTR
TGAGGGGAAGCTGATGGAGA+AGG 0.573717 6_4:+85344359 Msa1001530:CDS
ACCAGCTATGGGAACAAAAG+TGG 0.582336 6_4:+85344798 Msa1001530:CDS
GGATACGAGAGTTTAGGAGC+TGG 0.585193 6_4:-85345292 None:intergenic
TGAATTGATATAACTGGATG+AGG 0.586183 6_4:-85344044 None:intergenic
TTACTATGAAGAAAATCTGA+AGG 0.594001 6_4:+85344401 Msa1001530:CDS
ACTCTCAATGGTGACAAAAG+AGG 0.595016 6_4:+85344147 Msa1001530:CDS
AGGGTGATTCCTGATAAGAA+TGG 0.598709 6_4:+85345214 Msa1001530:CDS
GTGTAAATGCAGCGAAACAA+TGG 0.601045 6_4:+85344657 Msa1001530:intron
GTAGTAGTACTAGTTCCCAT+TGG 0.601509 6_4:-85345407 None:intergenic
ATTCTGGATATGGACATTCA+GGG 0.602948 6_4:-85344828 None:intergenic
AGAGTGCTAAAATCTATCAC+AGG 0.607878 6_4:-85344129 None:intergenic
TTGAGAACCATGACATTGAG+GGG 0.639790 6_4:+85344343 Msa1001530:CDS
ACTTTCCCAGTCAACATCAC+AGG 0.639833 6_4:-85344475 None:intergenic
AATGCAATCTTTGTCAACAC+AGG 0.645759 6_4:+85344976 Msa1001530:CDS
AGAGAACATACAGATGCTGG+TGG 0.658975 6_4:+85344865 Msa1001530:CDS
GAACACCTGTGATGTTGACT+GGG 0.666248 6_4:+85344470 Msa1001530:CDS
TCTTTGAAGAATTCAAGACC+AGG 0.676121 6_4:-85344919 None:intergenic
GAAAATTCCAAACCTCTCTG+AGG 0.679494 6_4:+85344536 Msa1001530:CDS
ACCAATCTGAGATAGCCAAG+AGG 0.699692 6_4:+85344433 Msa1001530:CDS
CTAACCAAAGCTCCTCAGAG+AGG 0.716992 6_4:-85344548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATGTTACATTTTTCTTT+TGG + chr6_4:85344252-85344271 Msa1001530:intron 15.0%
!!! TGTAACATATAGTATTTTTT+TGG + chr6_4:85344284-85344303 Msa1001530:intron 15.0%
!!! ATTTTCTAAATAATCTTAAC+AGG + chr6_4:85345142-85345161 Msa1001530:intron 15.0%
!!! TTAATGTTACATTTTTCTTT+TGG + chr6_4:85344252-85344271 Msa1001530:intron 15.0%
!!! TGTAACATATAGTATTTTTT+TGG + chr6_4:85344284-85344303 Msa1001530:intron 15.0%
!!! ATTTTCTAAATAATCTTAAC+AGG + chr6_4:85345142-85345161 Msa1001530:intron 15.0%
!! ACAAATACTTATCATAGATA+TGG + chr6_4:85344101-85344120 Msa1001530:exon 20.0%
!! AAGTGAATAAACATTTATGT+TGG + chr6_4:85344225-85344244 Msa1001530:intron 20.0%
!!! TTTTCAGGAAGTAATAATAA+TGG + chr6_4:85344775-85344794 Msa1001530:CDS 20.0%
!! ATTTGAATCCATTAAGAATA+AGG + chr6_4:85345384-85345403 Msa1001530:CDS 20.0%
!!! AAGTAGAAATTAAGAGTATT+AGG - chr6_4:85345460-85345479 None:intergenic 20.0%
!! ACAAATACTTATCATAGATA+TGG + chr6_4:85344101-85344120 Msa1001530:exon 20.0%
!! AAGTGAATAAACATTTATGT+TGG + chr6_4:85344225-85344244 Msa1001530:intron 20.0%
!!! TTTTCAGGAAGTAATAATAA+TGG + chr6_4:85344775-85344794 Msa1001530:CDS 20.0%
!! ATTTGAATCCATTAAGAATA+AGG + chr6_4:85345384-85345403 Msa1001530:CDS 20.0%
!!! AAGTAGAAATTAAGAGTATT+AGG - chr6_4:85345460-85345479 None:intergenic 20.0%
! GTTTGATGAATTGATATAAC+TGG - chr6_4:85344053-85344072 None:intergenic 25.0%
! TTACTATGAAGAAAATCTGA+AGG + chr6_4:85344401-85344420 Msa1001530:CDS 25.0%
!!! TGTGTTTCTCTATTTTAAAC+CGG + chr6_4:85344612-85344631 Msa1001530:intron 25.0%
! CATTGAAAAATTAGTTCAAG+TGG + chr6_4:85344687-85344706 Msa1001530:CDS 25.0%
! AATTCTTCAAAGATGGAAAA+TGG + chr6_4:85344929-85344948 Msa1001530:CDS 25.0%
!!! AAGATTGCATTGTTTTTTGA+AGG - chr6_4:85344967-85344986 None:intergenic 25.0%
! TATCCAAGTAATTATTGCTA+TGG + chr6_4:85345310-85345329 Msa1001530:CDS 25.0%
! CTTTATGGAAAAACTAAGTT+TGG + chr6_4:85345346-85345365 Msa1001530:CDS 25.0%
!! AAAAACTAAGTTTGGTGATA+AGG + chr6_4:85345354-85345373 Msa1001530:CDS 25.0%
!! AAAACTAAGTTTGGTGATAA+GGG + chr6_4:85345355-85345374 Msa1001530:CDS 25.0%
!!! TTCTTAATGGATTCAAATCT+AGG - chr6_4:85345382-85345401 None:intergenic 25.0%
! GTTTGATGAATTGATATAAC+TGG - chr6_4:85344053-85344072 None:intergenic 25.0%
! TTACTATGAAGAAAATCTGA+AGG + chr6_4:85344401-85344420 Msa1001530:CDS 25.0%
!!! TGTGTTTCTCTATTTTAAAC+CGG + chr6_4:85344612-85344631 Msa1001530:intron 25.0%
! CATTGAAAAATTAGTTCAAG+TGG + chr6_4:85344687-85344706 Msa1001530:CDS 25.0%
! AATTCTTCAAAGATGGAAAA+TGG + chr6_4:85344929-85344948 Msa1001530:CDS 25.0%
!!! AAGATTGCATTGTTTTTTGA+AGG - chr6_4:85344967-85344986 None:intergenic 25.0%
! TATCCAAGTAATTATTGCTA+TGG + chr6_4:85345310-85345329 Msa1001530:CDS 25.0%
! CTTTATGGAAAAACTAAGTT+TGG + chr6_4:85345346-85345365 Msa1001530:CDS 25.0%
!! AAAAACTAAGTTTGGTGATA+AGG + chr6_4:85345354-85345373 Msa1001530:CDS 25.0%
!! AAAACTAAGTTTGGTGATAA+GGG + chr6_4:85345355-85345374 Msa1001530:CDS 25.0%
!!! TTCTTAATGGATTCAAATCT+AGG - chr6_4:85345382-85345401 None:intergenic 25.0%
TGAATTGATATAACTGGATG+AGG - chr6_4:85344047-85344066 None:intergenic 30.0%
!! ATAGATTTTAGCACTCTCAA+TGG + chr6_4:85344135-85344154 Msa1001530:CDS 30.0%
! ATTTTCCTAATGTTAGACGT+CGG - chr6_4:85344522-85344541 None:intergenic 30.0%
! TACATAAAGACAGCATTTTC+AGG + chr6_4:85344760-85344779 Msa1001530:CDS 30.0%
!! TAATAATAATGGACCAGCTA+TGG + chr6_4:85344786-85344805 Msa1001530:CDS 30.0%
!! AATAATAATGGACCAGCTAT+GGG + chr6_4:85344787-85344806 Msa1001530:CDS 30.0%
!!! ATTGCATTGTTTTTTGAAGG+TGG - chr6_4:85344964-85344983 None:intergenic 30.0%
ATTAAACTTTGACACTGACA+CGG - chr6_4:85345121-85345140 None:intergenic 30.0%
!! TATACAAAAGTGTTGTGCAT+AGG + chr6_4:85345194-85345213 Msa1001530:CDS 30.0%
!! ATACAAAAGTGTTGTGCATA+GGG + chr6_4:85345195-85345214 Msa1001530:CDS 30.0%
GCAAGTTTCTATAATCCAAT+TGG + chr6_4:85345253-85345272 Msa1001530:CDS 30.0%
GAAATAATAGCTTCACCAAT+TGG - chr6_4:85345271-85345290 None:intergenic 30.0%
TCACCATAGCAATAATTACT+TGG - chr6_4:85345316-85345335 None:intergenic 30.0%
TTATTGCTATGGTGACTATT+TGG + chr6_4:85345321-85345340 Msa1001530:CDS 30.0%
ATGTTACAAATAGCCAAGAA+AGG + chr6_4:85345481-85345500 Msa1001530:three_prime_UTR 30.0%
! GATGTTACATTTTCCTTTCT+TGG - chr6_4:85345497-85345516 None:intergenic 30.0%
AGAAAGGAAAATGTAACATC+AGG + chr6_4:85345497-85345516 Msa1001530:three_prime_UTR 30.0%
GCTACAGAAAAGAGATAAAA+AGG - chr6_4:85344014-85344033 None:intergenic 30.0%
TGAATTGATATAACTGGATG+AGG - chr6_4:85344047-85344066 None:intergenic 30.0%
!! ATAGATTTTAGCACTCTCAA+TGG + chr6_4:85344135-85344154 Msa1001530:CDS 30.0%
! ATTTTCCTAATGTTAGACGT+CGG - chr6_4:85344522-85344541 None:intergenic 30.0%
! TACATAAAGACAGCATTTTC+AGG + chr6_4:85344760-85344779 Msa1001530:CDS 30.0%
!! TAATAATAATGGACCAGCTA+TGG + chr6_4:85344786-85344805 Msa1001530:CDS 30.0%
!! AATAATAATGGACCAGCTAT+GGG + chr6_4:85344787-85344806 Msa1001530:CDS 30.0%
!!! ATTGCATTGTTTTTTGAAGG+TGG - chr6_4:85344964-85344983 None:intergenic 30.0%
ATTAAACTTTGACACTGACA+CGG - chr6_4:85345121-85345140 None:intergenic 30.0%
!! TATACAAAAGTGTTGTGCAT+AGG + chr6_4:85345194-85345213 Msa1001530:CDS 30.0%
!! ATACAAAAGTGTTGTGCATA+GGG + chr6_4:85345195-85345214 Msa1001530:CDS 30.0%
GCAAGTTTCTATAATCCAAT+TGG + chr6_4:85345253-85345272 Msa1001530:CDS 30.0%
GAAATAATAGCTTCACCAAT+TGG - chr6_4:85345271-85345290 None:intergenic 30.0%
TCACCATAGCAATAATTACT+TGG - chr6_4:85345316-85345335 None:intergenic 30.0%
TTATTGCTATGGTGACTATT+TGG + chr6_4:85345321-85345340 Msa1001530:CDS 30.0%
ATGTTACAAATAGCCAAGAA+AGG + chr6_4:85345481-85345500 Msa1001530:three_prime_UTR 30.0%
! GATGTTACATTTTCCTTTCT+TGG - chr6_4:85345497-85345516 None:intergenic 30.0%
AGAAAGGAAAATGTAACATC+AGG + chr6_4:85345497-85345516 Msa1001530:three_prime_UTR 30.0%
! AGAGTGCTAAAATCTATCAC+AGG - chr6_4:85344132-85344151 None:intergenic 35.0%
TGACAAAAGAGGTGAAACTA+TGG + chr6_4:85344158-85344177 Msa1001530:CDS 35.0%
TGCATGAAGCTTGTCAAAAA+TGG + chr6_4:85344187-85344206 Msa1001530:CDS 35.0%
GCATGAAGCTTGTCAAAAAT+GGG + chr6_4:85344188-85344207 Msa1001530:CDS 35.0%
CATGAAGCTTGTCAAAAATG+GGG + chr6_4:85344189-85344208 Msa1001530:CDS 35.0%
ATTGAGAACCATGACATTGA+GGG + chr6_4:85344342-85344361 Msa1001530:CDS 35.0%
GGGAAAGTTCATTCTTCATT+TGG + chr6_4:85344490-85344509 Msa1001530:CDS 35.0%
ATAGAGAAACACACGATGTT+TGG - chr6_4:85344605-85344624 None:intergenic 35.0%
TATTGTTAGAACAACAGCTC+CGG - chr6_4:85344634-85344653 None:intergenic 35.0%
CAGATGATGAGTGAAAATCT+TGG + chr6_4:85344724-85344743 Msa1001530:CDS 35.0%
GATGAGTGAAAATCTTGGTT+TGG + chr6_4:85344729-85344748 Msa1001530:CDS 35.0%
ATTCTGGATATGGACATTCA+GGG - chr6_4:85344831-85344850 None:intergenic 35.0%
AATTCTGGATATGGACATTC+AGG - chr6_4:85344832-85344851 None:intergenic 35.0%
TGAATGTCCATATCCAGAAT+TGG + chr6_4:85344831-85344850 Msa1001530:CDS 35.0%
CTTTGTCATCTTGAAGCAAT+AGG - chr6_4:85344897-85344916 None:intergenic 35.0%
! TCTTTGAAGAATTCAAGACC+AGG - chr6_4:85344922-85344941 None:intergenic 35.0%
GGTCTTGAATTCTTCAAAGA+TGG + chr6_4:85344922-85344941 Msa1001530:CDS 35.0%
AATGCAATCTTTGTCAACAC+AGG + chr6_4:85344976-85344995 Msa1001530:CDS 35.0%
CATTGCTCAACACTTCAATT+TGG - chr6_4:85345171-85345190 None:intergenic 35.0%
!! CAAATTGAAGTGTTGAGCAA+TGG + chr6_4:85345169-85345188 Msa1001530:CDS 35.0%
AGTCTACTTCCATTCTTATC+AGG - chr6_4:85345226-85345245 None:intergenic 35.0%
TTACTTGGATACGAGAGTTT+AGG - chr6_4:85345301-85345320 None:intergenic 35.0%
TCCATTAAGAATAAGGCCAA+TGG + chr6_4:85345391-85345410 Msa1001530:CDS 35.0%
CCATTAAGAATAAGGCCAAT+GGG + chr6_4:85345392-85345411 Msa1001530:CDS 35.0%
! AGAGTGCTAAAATCTATCAC+AGG - chr6_4:85344132-85344151 None:intergenic 35.0%
TGACAAAAGAGGTGAAACTA+TGG + chr6_4:85344158-85344177 Msa1001530:CDS 35.0%
TGCATGAAGCTTGTCAAAAA+TGG + chr6_4:85344187-85344206 Msa1001530:CDS 35.0%
GCATGAAGCTTGTCAAAAAT+GGG + chr6_4:85344188-85344207 Msa1001530:CDS 35.0%
CATGAAGCTTGTCAAAAATG+GGG + chr6_4:85344189-85344208 Msa1001530:CDS 35.0%
ATTGAGAACCATGACATTGA+GGG + chr6_4:85344342-85344361 Msa1001530:CDS 35.0%
GGGAAAGTTCATTCTTCATT+TGG + chr6_4:85344490-85344509 Msa1001530:CDS 35.0%
ATAGAGAAACACACGATGTT+TGG - chr6_4:85344605-85344624 None:intergenic 35.0%
TATTGTTAGAACAACAGCTC+CGG - chr6_4:85344634-85344653 None:intergenic 35.0%
CAGATGATGAGTGAAAATCT+TGG + chr6_4:85344724-85344743 Msa1001530:CDS 35.0%
GATGAGTGAAAATCTTGGTT+TGG + chr6_4:85344729-85344748 Msa1001530:CDS 35.0%
ATTCTGGATATGGACATTCA+GGG - chr6_4:85344831-85344850 None:intergenic 35.0%
AATTCTGGATATGGACATTC+AGG - chr6_4:85344832-85344851 None:intergenic 35.0%
TGAATGTCCATATCCAGAAT+TGG + chr6_4:85344831-85344850 Msa1001530:CDS 35.0%
CTTTGTCATCTTGAAGCAAT+AGG - chr6_4:85344897-85344916 None:intergenic 35.0%
! TCTTTGAAGAATTCAAGACC+AGG - chr6_4:85344922-85344941 None:intergenic 35.0%
GGTCTTGAATTCTTCAAAGA+TGG + chr6_4:85344922-85344941 Msa1001530:CDS 35.0%
AATGCAATCTTTGTCAACAC+AGG + chr6_4:85344976-85344995 Msa1001530:CDS 35.0%
CATTGCTCAACACTTCAATT+TGG - chr6_4:85345171-85345190 None:intergenic 35.0%
!! CAAATTGAAGTGTTGAGCAA+TGG + chr6_4:85345169-85345188 Msa1001530:CDS 35.0%
AGTCTACTTCCATTCTTATC+AGG - chr6_4:85345226-85345245 None:intergenic 35.0%
TTACTTGGATACGAGAGTTT+AGG - chr6_4:85345301-85345320 None:intergenic 35.0%
TCCATTAAGAATAAGGCCAA+TGG + chr6_4:85345391-85345410 Msa1001530:CDS 35.0%
CCATTAAGAATAAGGCCAAT+GGG + chr6_4:85345392-85345411 Msa1001530:CDS 35.0%
ACTCTCAATGGTGACAAAAG+AGG + chr6_4:85344147-85344166 Msa1001530:CDS 40.0%
! TCAAAAATGGGGTTGCTTTC+TGG + chr6_4:85344200-85344219 Msa1001530:CDS 40.0%
GATTGAGAACCATGACATTG+AGG + chr6_4:85344341-85344360 Msa1001530:intron 40.0%
TTGAGAACCATGACATTGAG+GGG + chr6_4:85344343-85344362 Msa1001530:CDS 40.0%
GAAAATTCCAAACCTCTCTG+AGG + chr6_4:85344536-85344555 Msa1001530:CDS 40.0%
GTGTAAATGCAGCGAAACAA+TGG + chr6_4:85344657-85344676 Msa1001530:intron 40.0%
CCTCTAACCAATTCTGGATA+TGG - chr6_4:85344841-85344860 None:intergenic 40.0%
CCATATCCAGAATTGGTTAG+AGG + chr6_4:85344838-85344857 Msa1001530:CDS 40.0%
CTTAGTCCTCTAACCAATTC+TGG - chr6_4:85344847-85344866 None:intergenic 40.0%
CTAAGAGAACATACAGATGC+TGG + chr6_4:85344862-85344881 Msa1001530:CDS 40.0%
! CTTCAAGATGACAAAGTACC+TGG + chr6_4:85344901-85344920 Msa1001530:CDS 40.0%
AGGGTGATTCCTGATAAGAA+TGG + chr6_4:85345214-85345233 Msa1001530:CDS 40.0%
! GGTGACTATTTGGAGCTTTA+TGG + chr6_4:85345331-85345350 Msa1001530:CDS 40.0%
!! CCCATTGGCCTTATTCTTAA+TGG - chr6_4:85345395-85345414 None:intergenic 40.0%
GTAGTAGTACTAGTTCCCAT+TGG - chr6_4:85345410-85345429 None:intergenic 40.0%
ACTCTCAATGGTGACAAAAG+AGG + chr6_4:85344147-85344166 Msa1001530:CDS 40.0%
! TCAAAAATGGGGTTGCTTTC+TGG + chr6_4:85344200-85344219 Msa1001530:CDS 40.0%
GATTGAGAACCATGACATTG+AGG + chr6_4:85344341-85344360 Msa1001530:intron 40.0%
TTGAGAACCATGACATTGAG+GGG + chr6_4:85344343-85344362 Msa1001530:CDS 40.0%
GAAAATTCCAAACCTCTCTG+AGG + chr6_4:85344536-85344555 Msa1001530:CDS 40.0%
GTGTAAATGCAGCGAAACAA+TGG + chr6_4:85344657-85344676 Msa1001530:intron 40.0%
CCTCTAACCAATTCTGGATA+TGG - chr6_4:85344841-85344860 None:intergenic 40.0%
CCATATCCAGAATTGGTTAG+AGG + chr6_4:85344838-85344857 Msa1001530:CDS 40.0%
CTTAGTCCTCTAACCAATTC+TGG - chr6_4:85344847-85344866 None:intergenic 40.0%
CTAAGAGAACATACAGATGC+TGG + chr6_4:85344862-85344881 Msa1001530:CDS 40.0%
! CTTCAAGATGACAAAGTACC+TGG + chr6_4:85344901-85344920 Msa1001530:CDS 40.0%
AGGGTGATTCCTGATAAGAA+TGG + chr6_4:85345214-85345233 Msa1001530:CDS 40.0%
! GGTGACTATTTGGAGCTTTA+TGG + chr6_4:85345331-85345350 Msa1001530:CDS 40.0%
!! CCCATTGGCCTTATTCTTAA+TGG - chr6_4:85345395-85345414 None:intergenic 40.0%
GTAGTAGTACTAGTTCCCAT+TGG - chr6_4:85345410-85345429 None:intergenic 40.0%
! ACCAATCTGAGATAGCCAAG+AGG + chr6_4:85344433-85344452 Msa1001530:CDS 45.0%
ACCTCTTGGCTATCTCAGAT+TGG - chr6_4:85344437-85344456 None:intergenic 45.0%
! ATCTGAGATAGCCAAGAGGT+TGG + chr6_4:85344437-85344456 Msa1001530:CDS 45.0%
!!! CTGCTTTTTCTCCAACCTCT+TGG - chr6_4:85344451-85344470 None:intergenic 45.0%
AGAACACCTGTGATGTTGAC+TGG + chr6_4:85344469-85344488 Msa1001530:CDS 45.0%
! GAACACCTGTGATGTTGACT+GGG + chr6_4:85344470-85344489 Msa1001530:CDS 45.0%
ACTTTCCCAGTCAACATCAC+AGG - chr6_4:85344478-85344497 None:intergenic 45.0%
ATCGTCCGACGTCTAACATT+AGG + chr6_4:85344514-85344533 Msa1001530:CDS 45.0%
ACCAGCTATGGGAACAAAAG+TGG + chr6_4:85344798-85344817 Msa1001530:CDS 45.0%
AGAGAACATACAGATGCTGG+TGG + chr6_4:85344865-85344884 Msa1001530:CDS 45.0%
! ACCAATCTGAGATAGCCAAG+AGG + chr6_4:85344433-85344452 Msa1001530:CDS 45.0%
ACCTCTTGGCTATCTCAGAT+TGG - chr6_4:85344437-85344456 None:intergenic 45.0%
! ATCTGAGATAGCCAAGAGGT+TGG + chr6_4:85344437-85344456 Msa1001530:CDS 45.0%
!!! CTGCTTTTTCTCCAACCTCT+TGG - chr6_4:85344451-85344470 None:intergenic 45.0%
AGAACACCTGTGATGTTGAC+TGG + chr6_4:85344469-85344488 Msa1001530:CDS 45.0%
! GAACACCTGTGATGTTGACT+GGG + chr6_4:85344470-85344489 Msa1001530:CDS 45.0%
ACTTTCCCAGTCAACATCAC+AGG - chr6_4:85344478-85344497 None:intergenic 45.0%
ATCGTCCGACGTCTAACATT+AGG + chr6_4:85344514-85344533 Msa1001530:CDS 45.0%
ACCAGCTATGGGAACAAAAG+TGG + chr6_4:85344798-85344817 Msa1001530:CDS 45.0%
AGAGAACATACAGATGCTGG+TGG + chr6_4:85344865-85344884 Msa1001530:CDS 45.0%
TCAGCTTCCCCTCAATGTCA+TGG - chr6_4:85344353-85344372 None:intergenic 50.0%
TGACATTGAGGGGAAGCTGA+TGG + chr6_4:85344353-85344372 Msa1001530:CDS 50.0%
GCTGATGGAGAAGGTGAAGA+AGG + chr6_4:85344368-85344387 Msa1001530:CDS 50.0%
CAAAGCTCCTCAGAGAGGTT+TGG - chr6_4:85344546-85344565 None:intergenic 50.0%
! CAAACCTCTCTGAGGAGCTT+TGG + chr6_4:85344544-85344563 Msa1001530:CDS 50.0%
CTAACCAAAGCTCCTCAGAG+AGG - chr6_4:85344551-85344570 None:intergenic 50.0%
!!! GCCACTTTTGTTCCCATAGC+TGG - chr6_4:85344802-85344821 None:intergenic 50.0%
CTTCTGATCGAACGTGTGTC+TGG + chr6_4:85345041-85345060 Msa1001530:intron 50.0%
GGATACGAGAGTTTAGGAGC+TGG - chr6_4:85345295-85345314 None:intergenic 50.0%
TCAGCTTCCCCTCAATGTCA+TGG - chr6_4:85344353-85344372 None:intergenic 50.0%
TGACATTGAGGGGAAGCTGA+TGG + chr6_4:85344353-85344372 Msa1001530:CDS 50.0%
GCTGATGGAGAAGGTGAAGA+AGG + chr6_4:85344368-85344387 Msa1001530:CDS 50.0%
CAAAGCTCCTCAGAGAGGTT+TGG - chr6_4:85344546-85344565 None:intergenic 50.0%
! CAAACCTCTCTGAGGAGCTT+TGG + chr6_4:85344544-85344563 Msa1001530:CDS 50.0%
CTAACCAAAGCTCCTCAGAG+AGG - chr6_4:85344551-85344570 None:intergenic 50.0%
!!! GCCACTTTTGTTCCCATAGC+TGG - chr6_4:85344802-85344821 None:intergenic 50.0%
CTTCTGATCGAACGTGTGTC+TGG + chr6_4:85345041-85345060 Msa1001530:intron 50.0%
GGATACGAGAGTTTAGGAGC+TGG - chr6_4:85345295-85345314 None:intergenic 50.0%
TGAGGGGAAGCTGATGGAGA+AGG + chr6_4:85344359-85344378 Msa1001530:CDS 55.0%
TGAGGGGAAGCTGATGGAGA+AGG + chr6_4:85344359-85344378 Msa1001530:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 85344013 85345524 85344013 ID=Msa1001530;Name=Msa1001530
chr6_4 mRNA 85344013 85345524 85344013 ID=Msa1001530-mRNA-1;Parent=Msa1001530;Name=Msa1001530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=107|1|1|1|1|1|4|104|303
chr6_4 exon 85344013 85344221 85344013 ID=Msa1001530-mRNA-1:exon:16746;Parent=Msa1001530-mRNA-1
chr6_4 exon 85344342 85344565 85344342 ID=Msa1001530-mRNA-1:exon:16747;Parent=Msa1001530-mRNA-1
chr6_4 exon 85344669 85344997 85344669 ID=Msa1001530-mRNA-1:exon:16748;Parent=Msa1001530-mRNA-1
chr6_4 exon 85345164 85345524 85345164 ID=Msa1001530-mRNA-1:exon:16749;Parent=Msa1001530-mRNA-1
chr6_4 five_prime_UTR 85344013 85344119 85344013 ID=Msa1001530-mRNA-1:five_prime_utr;Parent=Msa1001530-mRNA-1
chr6_4 CDS 85344120 85344221 85344120 ID=Msa1001530-mRNA-1:cds;Parent=Msa1001530-mRNA-1
chr6_4 CDS 85344342 85344565 85344342 ID=Msa1001530-mRNA-1:cds;Parent=Msa1001530-mRNA-1
chr6_4 CDS 85344669 85344997 85344669 ID=Msa1001530-mRNA-1:cds;Parent=Msa1001530-mRNA-1
chr6_4 CDS 85345164 85345420 85345164 ID=Msa1001530-mRNA-1:cds;Parent=Msa1001530-mRNA-1
chr6_4 three_prime_UTR 85345421 85345524 85345421 ID=Msa1001530-mRNA-1:three_prime_utr;Parent=Msa1001530-mRNA-1
Gene Sequence

>Msa1001530

ATGGCAATTCCTGTGATAGATTTTAGCACTCTCAATGGTGACAAAAGAGGTGAAACTATGGCTCTTTTGCATGAAGCTTGTCAAAAATGGGGTTGCTTTCTGATTGAGAACCATGACATTGAGGGGAAGCTGATGGAGAAGGTGAAGAAGGTAATTAATAGTTACTATGAAGAAAATCTGAAGGAAAGTTTTTACCAATCTGAGATAGCCAAGAGGTTGGAGAAAAAGCAGAACACCTGTGATGTTGACTGGGAAAGTTCATTCTTCATTTGGCATCGTCCGACGTCTAACATTAGGAAAATTCCAAACCTCTCTGAGGAGCTTTGCGAAACAATGGACGAGTACATTGAAAAATTAGTTCAAGTGGCAGAGACATTATCTCAGATGATGAGTGAAAATCTTGGTTTGGAGAAAGATTACATAAAGACAGCATTTTCAGGAAGTAATAATAATGGACCAGCTATGGGAACAAAAGTGGCAAAGTACCCTGAATGTCCATATCCAGAATTGGTTAGAGGACTAAGAGAACATACAGATGCTGGTGGAATCATCCTATTGCTTCAAGATGACAAAGTACCTGGTCTTGAATTCTTCAAAGATGGAAAATGGATTGAGATACCACCTTCAAAAAACAATGCAATCTTTGTCAACACAGGTGACCAAATTGAAGTGTTGAGCAATGGTTTATACAAAAGTGTTGTGCATAGGGTGATTCCTGATAAGAATGGAAGTAGACTATCTATTGCAAGTTTCTATAATCCAATTGGTGAAGCTATTATTTCTCCAGCTCCTAAACTCTCGTATCCAAGTAATTATTGCTATGGTGACTATTTGGAGCTTTATGGAAAAACTAAGTTTGGTGATAAGGGTCCTAGATTTGAATCCATTAAGAATAAGGCCAATGGGAACTAG

Protein sequence

>Msa1001530

MAIPVIDFSTLNGDKRGETMALLHEACQKWGCFLIENHDIEGKLMEKVKKVINSYYEENLKESFYQSEIAKRLEKKQNTCDVDWESSFFIWHRPTSNIRKIPNLSEELCETMDEYIEKLVQVAETLSQMMSENLGLEKDYIKTAFSGSNNNGPAMGTKVAKYPECPYPELVRGLREHTDAGGIILLLQDDKVPGLEFFKDGKWIEIPPSKNNAIFVNTGDQIEVLSNGLYKSVVHRVIPDKNGSRLSIASFYNPIGEAIISPAPKLSYPSNYCYGDYLELYGKTKFGDKGPRFESIKNKANGN*