AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902250 MtrunA17_Chr7g0223711 81.260 619 100 3 1 603 1 619 0.0 1029
Msa0902250 MtrunA17_Chr8g0350731 80.744 618 104 2 1 603 29 646 0.0 1015
Msa0902250 MtrunA17_Chr7g0223631 81.553 618 85 4 1 603 1 604 0.0 1009
Msa0902250 MtrunA17_Chr7g0223751 76.375 618 131 2 1 603 1 618 0.0 970
Msa0902250 MtrunA17_Chr7g0223701 77.193 627 119 4 1 603 1 627 0.0 965
Msa0902250 MtrunA17_Chr7g0223621 75.000 612 138 2 1 597 1 612 0.0 931
Msa0902250 MtrunA17_Chr7g0223031 72.594 613 153 2 1 598 1 613 0.0 925
Msa0902250 MtrunA17_Chr7g0223731 73.008 615 151 2 1 600 1 615 0.0 924
Msa0902250 MtrunA17_Chr7g0223741 72.362 597 149 3 1 581 1 597 0.0 892
Msa0902250 MtrunA17_Chr7g0248131 71.910 623 155 6 1 603 1 623 0.0 890
Msa0902250 MtrunA17_Chr7g0248151 72.303 621 154 4 1 603 1 621 0.0 879
Msa0902250 MtrunA17_Chr7g0223681 80.492 528 88 2 91 603 2 529 0.0 845
Msa0902250 MtrunA17_Chr7g0223541 71.978 546 137 3 74 603 31 576 0.0 808
Msa0902250 MtrunA17_Chr7g0223181 65.858 618 191 6 1 600 1 616 0.0 808
Msa0902250 MtrunA17_Chr7g0221661 65.139 611 197 3 1 595 1 611 0.0 808
Msa0902250 MtrunA17_Chr7g0262821 65.378 621 195 6 1 603 1 619 0.0 803
Msa0902250 MtrunA17_Chr4g0031321 66.066 610 187 6 1 592 1 608 0.0 801
Msa0902250 MtrunA17_Chr4g0031301 65.902 610 188 6 1 592 1 608 0.0 800
Msa0902250 MtrunA17_Chr7g0223291 64.734 621 199 6 1 603 1 619 0.0 798
Msa0902250 MtrunA17_Chr7g0223801 63.875 609 204 3 1 594 1 608 0.0 796
Msa0902250 MtrunA17_Chr7g0223781 64.763 613 200 3 1 598 1 612 0.0 795
Msa0902250 MtrunA17_Chr2g0298851 63.371 617 207 6 1 599 1 616 0.0 792
Msa0902250 MtrunA17_Chr5g0427901 62.620 626 207 4 1 599 1 626 0.0 789
Msa0902250 MtrunA17_Chr7g0233311 63.269 618 207 5 1 599 1 617 0.0 784
Msa0902250 MtrunA17_Chr2g0293581 63.710 620 206 6 1 601 1 620 0.0 784
Msa0902250 MtrunA17_Chr7g0223851 62.945 618 212 4 1 601 10 627 0.0 783
Msa0902250 MtrunA17_Chr7g0223721 62.662 616 213 4 1 599 1 616 0.0 780
Msa0902250 MtrunA17_Chr4g0073741 63.768 621 204 7 1 603 1 618 0.0 780
Msa0902250 MtrunA17_Chr7g0225671 62.764 615 211 5 3 601 12 624 0.0 775
Msa0902250 MtrunA17_Chr2g0298861 61.624 628 212 6 1 599 1 628 0.0 775
Msa0902250 MtrunA17_Chr4g0040931 62.193 611 214 4 1 594 1 611 0.0 764
Msa0902250 MtrunA17_Chr7g0223821 61.974 618 215 4 1 598 1 618 0.0 753
Msa0902250 MtrunA17_Chr2g0287631 62.885 617 211 5 1 599 1 617 0.0 745
Msa0902250 MtrunA17_Chr7g0217971 61.383 593 190 3 1 578 1 569 0.0 741
Msa0902250 MtrunA17_Chr2g0296391 67.614 528 154 4 1 511 1 528 0.0 728
Msa0902250 MtrunA17_Chr7g0233301 60.596 604 215 6 1 599 1 586 0.0 723
Msa0902250 MtrunA17_Chr4g0012541 59.061 618 227 5 1 601 1 609 0.0 718
Msa0902250 MtrunA17_Chr7g0223831 58.429 611 209 6 1 594 1 583 0.0 701
Msa0902250 MtrunA17_Chr6g0462601 58.481 619 234 5 1 600 1 615 0.0 700
Msa0902250 MtrunA17_Chr8g0390821 56.353 669 208 10 1 600 1 654 0.0 699
Msa0902250 MtrunA17_Chr2g0293601 67.857 504 139 4 1 501 1 484 0.0 691
Msa0902250 MtrunA17_Chr7g0215261 57.749 613 205 6 1 594 1 578 0.0 691
Msa0902250 MtrunA17_Chr7g0228281 56.888 617 206 6 1 601 62 634 0.0 684
Msa0902250 MtrunA17_Chr6g0462681 57.512 619 243 5 1 601 1 617 0.0 684
Msa0902250 MtrunA17_Chr2g0331381 63.127 518 143 4 10 526 7 477 0.0 671
Msa0902250 MtrunA17_Chr6g0462711 56.078 617 248 5 8 602 9 624 0.0 650
Msa0902250 MtrunA17_Chr6g0462771 57.439 578 222 5 8 563 8 583 0.0 637
Msa0902250 MtrunA17_Chr6g0462641 54.167 624 262 5 1 602 1 622 0.0 636
Msa0902250 MtrunA17_Chr2g0284681 56.071 560 220 8 9 544 8 565 0.0 614
Msa0902250 MtrunA17_Chr2g0293561 73.529 374 99 0 1 374 1 374 0.0 597
Msa0902250 MtrunA17_Chr2g0299821 57.303 534 167 6 1 523 1 484 0.0 593
Msa0902250 MtrunA17_Chr8g0388671 52.292 589 255 9 7 575 36 618 0.0 590
Msa0902250 MtrunA17_Chr8g0388761 51.952 589 257 9 7 575 36 618 0.0 590
Msa0902250 MtrunA17_Chr1g0166551 52.694 594 181 5 9 599 5 501 0.0 590
Msa0902250 MtrunA17_Chr6g0462611 55.515 544 226 3 74 601 22 565 0.0 581
Msa0902250 MtrunA17_Chr2g0299921 68.873 408 116 4 3 409 1023 1420 0.0 569
Msa0902250 MtrunA17_Chr2g0299921 68.638 389 117 3 3 390 1407 1791 2.34e-169 526
Msa0902250 MtrunA17_Chr2g0299791 69.409 389 115 2 1 389 1034 1418 0.0 551
Msa0902250 MtrunA17_Chr2g0299851 66.923 390 125 2 1 390 1030 1415 9.01e-180 546
Msa0902250 MtrunA17_Chr2g0299881 66.327 392 124 4 2 389 1031 1418 2.00e-171 525
Msa0902250 MtrunA17_Chr2g0299881 59.701 67 27 0 184 250 1409 1475 4.54e-18 89.0
Msa0902250 MtrunA17_Chr2g0293271 57.920 423 109 3 14 436 36 389 1.51e-165 478
Msa0902250 MtrunA17_Chr6g0462861 46.667 585 275 10 1 564 1 569 1.04e-162 479
Msa0902250 MtrunA17_Chr1g0151991 71.478 291 83 0 1 291 1 291 3.08e-153 442
Msa0902250 MtrunA17_Chr7g0245521 73.626 273 72 0 1 273 1 273 9.33e-152 437
Msa0902250 MtrunA17_Chr2g0279901 45.811 561 259 13 10 545 57 597 1.02e-150 450
Msa0902250 MtrunA17_Chr4g0049501 44.563 561 267 12 10 545 54 595 6.03e-147 440
Msa0902250 MtrunA17_Chr2g0277021 44.165 557 276 12 10 545 72 614 4.57e-138 418
Msa0902250 MtrunA17_Chr7g0223761 51.811 359 139 4 241 594 3 332 1.05e-116 351
Msa0902250 MtrunA17_Chr7g0223671 85.946 185 26 0 74 258 8 192 3.06e-115 342
Msa0902250 MtrunA17_Chr7g0245531 55.272 313 124 3 305 601 2 314 7.87e-110 332
Msa0902250 MtrunA17_Chr1g0188601 76.440 191 45 0 92 282 1 191 7.25e-105 315
Msa0902250 MtrunA17_Chr6g0462631 51.818 330 109 5 91 415 13 297 1.85e-102 312
Msa0902250 MtrunA17_Chr6g0462751 48.680 341 114 4 74 410 19 302 3.84e-97 299
Msa0902250 MtrunA17_Chr1g0152001 52.542 295 125 3 315 594 1 295 3.03e-96 297
Msa0902250 MtrunA17_Chr7g0223771 75.163 153 38 0 93 245 1 153 1.03e-79 248
Msa0902250 MtrunA17_Chr6g0462791 66.854 178 58 1 109 286 2 178 2.99e-78 245
Msa0902250 MtrunA17_Chr2g0331901 35.160 438 268 5 10 434 4 438 1.18e-77 263
Msa0902250 MtrunA17_Chr4g0004331 35.294 442 262 6 10 434 4 438 2.17e-76 259
Msa0902250 MtrunA17_Chr5g0444001 35.116 430 270 6 10 433 4 430 7.13e-74 246
Msa0902250 MtrunA17_Chr1g0188611 51.186 295 120 5 322 599 1 288 2.11e-73 237
Msa0902250 MtrunA17_Chr4g0046881 75.342 146 33 1 130 275 9 151 1.80e-71 226
Msa0902250 MtrunA17_Chr5g0394391 33.532 504 292 15 8 478 28 521 4.97e-71 239
Msa0902250 MtrunA17_Chr3g0098761 34.129 419 271 4 10 427 4 418 6.94e-71 243
Msa0902250 MtrunA17_Chr7g0223861 74.046 131 34 0 78 208 4 134 1.15e-63 206
Msa0902250 MtrunA17_Chr6g0462701 54.444 180 58 1 91 270 13 168 4.97e-56 186
Msa0902250 MtrunA17_Chr3g0120101 31.267 371 237 5 36 391 55 422 6.36e-55 200
Msa0902250 MtrunA17_Chr4g0064621 32.184 522 302 17 8 487 139 650 1.00e-50 186
Msa0902250 MtrunA17_Chr6g0481391 64.754 122 40 1 38 159 13 131 2.79e-47 162
Msa0902250 MtrunA17_Chr5g0394221 40.458 262 136 5 291 534 61 320 1.45e-45 165
Msa0902250 MtrunA17_Chr4g0046871 72.381 105 28 1 333 436 3 107 2.67e-44 153
Msa0902250 MtrunA17_Chr4g0060241 28.402 507 310 16 8 480 19 506 1.98e-43 163
Msa0902250 MtrunA17_Chr5g0394231 36.564 227 93 4 74 299 5 181 1.60e-41 148
Msa0902250 MtrunA17_Chr5g0442171 33.945 327 185 12 170 472 1 320 7.97e-40 148
Msa0902250 MtrunA17_Chr7g0223691 86.301 73 10 0 1 73 1 73 1.53e-39 139
Msa0902250 MtrunA17_Chr7g0245541 40.500 200 104 2 416 600 1 200 4.29e-39 142
Msa0902250 MtrunA17_Chr6g0462691 48.592 142 57 2 322 447 1 142 1.61e-35 131
Msa0902250 MtrunA17_Chr6g0481381 72.973 74 20 0 176 249 1 74 3.74e-31 119
Msa0902250 MtrunA17_Chr6g0481381 37.895 95 58 1 499 592 75 169 1.29e-11 63.9
Msa0902250 MtrunA17_Chr1g0188591 73.973 73 19 0 1 73 1 73 8.56e-31 115
Msa0902250 MtrunA17_Chr6g0462621 72.603 73 18 1 1 73 1 71 7.80e-29 109
Msa0902250 MtrunA17_Chr7g0223791 69.512 82 17 3 56 137 18 91 1.17e-27 109
Msa0902250 MtrunA17_Chr7g0223791 36.559 93 59 0 465 557 89 181 1.72e-15 75.1
Msa0902250 MtrunA17_Chr7g0223881 55.422 83 36 1 281 363 2 83 1.72e-23 94.7
Msa0902250 MtrunA17_Chr7g0221651 51.190 84 41 0 215 298 1 84 1.68e-22 92.0
Msa0902250 MtrunA17_Chr7g0223661 46.491 114 17 2 315 427 1 71 1.53e-20 86.3
Msa0902250 MtrunA17_Chr7g0223871 35.156 128 82 1 475 601 7 134 6.56e-17 77.8
Msa0902250 MtrunA17_Chr6g0462801 56.061 66 24 1 322 382 1 66 2.30e-15 71.2
Msa0902250 MtrunA17_Chr2g0299891 72.093 43 12 0 315 357 1 43 1.83e-14 68.6
Msa0902250 MtrunA17_Chr2g0284661 46.988 83 39 3 368 448 61 140 3.23e-12 64.3
Msa0902250 MtrunA17_Chr2g0284661 53.333 60 26 1 225 282 5 64 4.62e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902250 AT3G12580.1 65.700 621 193 6 1 603 1 619 0.0 808
Msa0902250 AT5G02500.1 64.078 618 202 6 1 600 1 616 0.0 794
Msa0902250 AT5G02490.1 63.592 618 205 6 1 600 1 616 0.0 787
Msa0902250 AT3G09440.1 64.401 618 200 6 1 600 1 616 0.0 785
Msa0902250 AT3G09440.4 64.401 618 200 6 1 600 1 616 0.0 785
Msa0902250 AT3G09440.2 64.401 618 200 6 1 600 1 616 0.0 785
Msa0902250 AT3G09440.3 64.401 618 200 6 1 600 1 616 0.0 785
Msa0902250 AT1G56410.1 62.802 621 209 7 1 603 1 617 0.0 773
Msa0902250 AT1G16030.1 62.802 621 210 7 1 603 1 618 0.0 771
Msa0902250 AT5G02500.2 74.550 389 97 1 1 389 1 387 0.0 618
Msa0902250 AT5G02500.2 41.935 93 54 0 500 592 386 478 1.31e-12 70.9
Msa0902250 AT5G28540.1 52.145 606 264 9 7 592 35 634 0.0 603
Msa0902250 AT5G42020.1 51.815 606 266 9 7 592 35 634 0.0 601
Msa0902250 AT5G42020.3 51.815 606 266 9 7 592 40 639 0.0 600
Msa0902250 AT1G09080.2 50.897 613 276 8 7 600 40 646 0.0 583
Msa0902250 AT1G09080.1 50.897 613 276 8 7 600 50 656 0.0 583
Msa0902250 AT5G42020.2 54.321 486 196 9 7 472 35 514 1.16e-173 506
Msa0902250 AT5G09590.1 44.685 555 271 11 10 543 60 599 8.66e-146 437
Msa0902250 AT4G37910.1 44.920 561 265 12 10 545 55 596 1.17e-141 427
Msa0902250 AT4G37910.2 44.920 561 265 12 10 545 55 596 1.17e-141 427
Msa0902250 AT4G24280.1 43.986 557 277 12 10 545 81 623 1.14e-137 418
Msa0902250 AT5G49910.1 43.806 557 278 12 10 545 81 623 2.93e-137 417
Msa0902250 AT1G11660.4 31.333 600 339 10 10 543 4 596 1.33e-82 275
Msa0902250 AT1G11660.3 31.333 600 339 10 10 543 4 596 1.33e-82 275
Msa0902250 AT1G11660.1 31.333 600 339 10 10 543 4 596 1.33e-82 275
Msa0902250 AT1G79930.2 34.932 438 269 4 10 434 4 438 2.44e-78 264
Msa0902250 AT1G79920.1 35.227 440 265 5 10 434 4 438 3.35e-78 263
Msa0902250 AT1G79920.3 35.227 440 265 5 10 434 4 438 3.56e-78 263
Msa0902250 AT1G79920.2 35.227 440 265 5 10 434 4 438 3.56e-78 263
Msa0902250 AT1G79920.4 35.227 440 265 5 10 434 4 438 3.56e-78 263
Msa0902250 AT1G79930.1 34.932 438 269 4 10 434 4 438 7.18e-78 263
Msa0902250 AT1G11660.2 31.972 563 312 9 47 543 2 559 2.92e-77 260
Msa0902250 AT2G32120.1 31.907 514 302 15 8 491 29 524 2.35e-63 219
Msa0902250 AT2G32120.2 31.907 514 302 15 8 491 29 524 2.35e-63 219
Msa0902250 AT4G16660.1 29.950 404 260 8 6 391 23 421 1.34e-54 199
Msa0902250 AT4G16660.2 29.950 404 260 8 6 391 47 445 1.74e-54 199

Find 125 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 6_1:+100169034 None:intergenic
TTTGAATTGGCTTCAAAATT+TGG 0.143460 6_1:+100170305 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 6_1:-100169554 Msa0902250:CDS
AACCCAATCAACACTGTATT+TGG 0.172484 6_1:-100170048 Msa0902250:intron
ATACATCAAGGTATTGATTT+TGG 0.175194 6_1:-100168944 Msa0902250:CDS
TCCTTGTTGGTGGTTCTTCT+AGG 0.229614 6_1:-100168799 Msa0902250:CDS
TGTAGTGTATAGTAGTATTT+TGG 0.234038 6_1:+100170342 None:intergenic
TGGCCCTTTAAGGTCATTTC+CGG 0.243786 6_1:-100169544 Msa0902250:CDS
GCAGATGCTAAGAGGTTAAT+TGG 0.256643 6_1:-100169610 Msa0902250:intron
TCTCTAGGGACGGATAATTT+AGG 0.259656 6_1:-100168611 Msa0902250:CDS
AGTCGAGGCAAGAAATAATT+TGG 0.269785 6_1:-100168212 Msa0902250:CDS
GGATAATTTAGGAGATATTA+TGG 0.283036 6_1:-100168600 Msa0902250:CDS
TGTAATAGCTGCCTCACTTT+AGG 0.285625 6_1:+100168773 None:intergenic
GATCAATTCTGCAATGATAA+AGG 0.293473 6_1:-100168110 Msa0902250:CDS
CTTTGAAATTGTTAGCTTCC+TGG 0.309267 6_1:+100168260 None:intergenic
ATTACAATAACTAATGAAAA+TGG 0.320614 6_1:-100168316 Msa0902250:CDS
CGGCATCACCAATCAGCCTT+TGG 0.346998 6_1:+100170091 None:intergenic
AGCACCGGAAATGACCTTAA+AGG 0.349583 6_1:+100169540 None:intergenic
GTAATCACTGCATTCTTAAC+AGG 0.359063 6_1:+100169397 None:intergenic
CTTACGCATGTGTTGGAGTA+TGG 0.368503 6_1:-100170197 Msa0902250:CDS
TGCATATGGTGCTGCTGTGC+AGG 0.381055 6_1:-100168696 Msa0902250:CDS
CTGCTTGTGAGAAGGCAAAA+AGG 0.381815 6_1:-100169009 Msa0902250:CDS
ATAGCAAAGCATACTTTGAT+AGG 0.383076 6_1:+100168400 None:intergenic
TTACCAAATACAGTGTTGAT+TGG 0.383287 6_1:+100170045 None:intergenic
CATATTCAATTGCTCAAACT+TGG 0.389972 6_1:+100168904 None:intergenic
CCATATGCAACAGCCTCATC+AGG 0.392319 6_1:+100168710 None:intergenic
GTAGATGATGTTGTCCTTGT+TGG 0.401743 6_1:-100168812 Msa0902250:CDS
ACATCTCGAAGTGTCAAGTT+TGG 0.401751 6_1:+100168644 None:intergenic
TTTGTAGAGAAGATTTGAAT+TGG 0.406011 6_1:+100170292 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 6_1:+100169339 None:intergenic
TTGATCTTCACTTTGTCTAC+AGG 0.406918 6_1:+100168127 None:intergenic
TACCAAATACAGTGTTGATT+GGG 0.407934 6_1:+100170046 None:intergenic
ATTACCACTGGTTTCTTCTT+CGG 0.414017 6_1:+100168348 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 6_1:-100169280 Msa0902250:CDS
ACAAATTCCCAAAGGCTGAT+TGG 0.415818 6_1:-100170099 Msa0902250:CDS
ATCAATTCTGCAATGATAAA+GGG 0.417003 6_1:-100168109 Msa0902250:CDS
ATCTAGGTCAATTGTGGCTT+CGG 0.423568 6_1:+100168970 None:intergenic
GGCATCACCAATCAGCCTTT+GGG 0.424089 6_1:+100170092 None:intergenic
CTTCTTGATTTCACCTTACA+CGG 0.429015 6_1:+100172270 None:intergenic
AAAGATGCAGGTGATATTGC+TGG 0.430331 6_1:-100169334 Msa0902250:CDS
GCACCGGAAATGACCTTAAA+GGG 0.431309 6_1:+100169541 None:intergenic
TTTGAAGTCAAGGCCACTGC+TGG 0.434747 6_1:-100169154 Msa0902250:CDS
AAGAACAAAGAGGATATTAG+TGG 0.439661 6_1:-100169061 Msa0902250:CDS
TTGACAGTTCAGTCCGTGTA+AGG 0.440371 6_1:-100172283 Msa0902250:five_prime_UTR
GATGTTATACCTTTGTCTCT+AGG 0.450281 6_1:-100168626 Msa0902250:CDS
GAACCTCTTTGAAAAGTGTA+TGG 0.453646 6_1:-100168882 Msa0902250:CDS
GGAAGATGCATTTGTGTTTG+TGG 0.453953 6_1:-100168059 Msa0902250:CDS
AGAGCTTGAGAGAATGATCC+AGG 0.460217 6_1:-100168278 Msa0902250:CDS
TTTATCTTTGACCTTGGCGG+TGG 0.462714 6_1:-100169217 Msa0902250:CDS
TTGTAGTTCACAAGAATTGT+CGG 0.473999 6_1:+100169508 None:intergenic
TTTGTCTACAGGGGTGAGCT+TGG 0.474241 6_1:+100168138 None:intergenic
TTTGGTTGATGACAACCAAC+AGG 0.478343 6_1:-100168080 Msa0902250:CDS
TTATGGATGTCGTTATTCCT+AGG 0.478554 6_1:-100168583 Msa0902250:CDS
CCTGATGAGGCTGTTGCATA+TGG 0.478680 6_1:-100168710 Msa0902250:CDS
ATGTTATACCTTTGTCTCTA+GGG 0.479524 6_1:-100168625 Msa0902250:CDS
AATATCATTCTTATTACCAC+TGG 0.490634 6_1:+100168336 None:intergenic
CGCATGTGTTGGAGTATGGC+TGG 0.491560 6_1:-100170193 Msa0902250:CDS
GAAATTATTCACAATGATCA+AGG 0.492859 6_1:-100170153 Msa0902250:CDS
GATGATGTTGTCCTTGTTGG+TGG 0.496358 6_1:-100168809 Msa0902250:CDS
TTGTCTTGCTGATGCTAAGA+TGG 0.502095 6_1:-100168846 Msa0902250:CDS
CAGTGTGAGGAAAGTAATGA+AGG 0.504146 6_1:-100168176 Msa0902250:CDS
TGTGAATCATTAAAATAAGC+AGG 0.511579 6_1:+100169370 None:intergenic
GCCAGTCAGAACAACTTGCT+TGG 0.519312 6_1:-100168463 Msa0902250:CDS
AAATAAGGTCTTTGAAGTCA+AGG 0.528245 6_1:-100169164 Msa0902250:CDS
TACCTTGATGTATAACATCT+AGG 0.530064 6_1:+100168954 None:intergenic
TGTCGGTTTGTCATCAGCAC+CGG 0.535167 6_1:+100169525 None:intergenic
ACCAAGCAAGTTGTTCTGAC+TGG 0.546188 6_1:+100168462 None:intergenic
AGTATTGTCTTTACAGTGTG+AGG 0.546529 6_1:-100168189 Msa0902250:CDS
CAAAGCATACTTTGATAGGA+AGG 0.555286 6_1:+100168404 None:intergenic
GACCTAGATGTTATACATCA+AGG 0.558168 6_1:-100168956 Msa0902250:CDS
TGATCTTCACTTTGTCTACA+GGG 0.559552 6_1:+100168128 None:intergenic
CGAAGAGCCACTAAAGATGC+AGG 0.564548 6_1:-100169346 Msa0902250:CDS
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 6_1:+100169283 None:intergenic
CTTTGATAGGAAGGCCGCGA+GGG 0.569475 6_1:+100168413 None:intergenic
GTTGCGATCGGAATTGACCT+TGG 0.569919 6_1:-100170225 Msa0902250:CDS
ATGCTAAGAGGTTAATTGGA+AGG 0.571352 6_1:-100169606 Msa0902250:CDS
CAATCTCTCGCATCTGTGAG+AGG 0.572867 6_1:+100169440 None:intergenic
TATAACATCTAGGTCAATTG+TGG 0.576693 6_1:+100168964 None:intergenic
ACAGGAATAGAAGAGTTCCT+AGG 0.576763 6_1:+100168566 None:intergenic
AAATATGAGGGAGTTGCGAT+CGG 0.580136 6_1:-100170237 Msa0902250:CDS
ACACAAATGCATCTTCCTGT+TGG 0.581155 6_1:+100168065 None:intergenic
CAGGCTGCTTTGTTGAGTGA+AGG 0.581375 6_1:-100168677 Msa0902250:CDS
TATACCTTTGTCTCTAGGGA+CGG 0.584148 6_1:-100168621 Msa0902250:CDS
GTTGAGAACTGCTTGTGAGA+AGG 0.588118 6_1:-100169017 Msa0902250:CDS
TTTGTGAAAGCAACACAAGA+AGG 0.591303 6_1:+100170117 None:intergenic
AGCAGTTCTCAACCTCCTCA+AGG 0.592116 6_1:+100169027 None:intergenic
TCTTGTGAACTACAAGGGTG+AGG 0.592468 6_1:-100169500 Msa0902250:CDS
ACTGCTGGAGACACGCACCT+AGG 0.597914 6_1:-100169139 Msa0902250:CDS
GGCATGACTTACGCATGTGT+TGG 0.597986 6_1:-100170204 Msa0902250:CDS
TTCATTCACTTGAAGCACAA+TGG 0.598922 6_1:-100170265 Msa0902250:exon
GATAATCAACGAACCGACTG+CGG 0.599523 6_1:-100169296 Msa0902250:CDS
GACAATTCTTGTGAACTACA+AGG 0.599895 6_1:-100169506 Msa0902250:CDS
CTTCTAGGATTCCTAAAGTG+AGG 0.600875 6_1:-100168784 Msa0902250:CDS
TAGGTGCGTGTCTCCAGCAG+TGG 0.603195 6_1:+100169141 None:intergenic
TATCAAAGTCTTCACCGCCT+AGG 0.607358 6_1:+100169122 None:intergenic
TGAAGACTTTGATAACAGAA+TGG 0.610392 6_1:-100169113 Msa0902250:CDS
TTGCTTTCACAAATTCCCAA+AGG 0.615627 6_1:-100170107 Msa0902250:CDS
CATCAAAAGTTCCACCGCCA+AGG 0.617660 6_1:+100169206 None:intergenic
ACTTTGTGAAGGAGTTCAAG+AGG 0.618825 6_1:-100169084 Msa0902250:CDS
CAGTAGATCATTCTGAACAA+TGG 0.620189 6_1:+100169570 None:intergenic
TTATCCGTCCCTAGAGACAA+AGG 0.628280 6_1:+100168617 None:intergenic
TAAGAGCATCAACCCTGATG+AGG 0.628505 6_1:-100168723 Msa0902250:CDS
GAAAGCAACACAAGAAGGAG+TGG 0.629512 6_1:+100170122 None:intergenic
TTCAGAATGATCTACTGTTG+TGG 0.632222 6_1:-100169564 Msa0902250:CDS
CACATGCGTAAGTCATGCCA+AGG 0.633484 6_1:+100170208 None:intergenic
AATGGTGAATCACTTTGTGA+AGG 0.643840 6_1:-100169095 Msa0902250:CDS
GTTCAAGAGGAAGAACAAAG+AGG 0.645922 6_1:-100169071 Msa0902250:CDS
TCCTAGAAGAACCACCAACA+AGG 0.646014 6_1:+100168798 None:intergenic
CATATGCAACAGCCTCATCA+GGG 0.647026 6_1:+100168711 None:intergenic
TTTGATAGGAAGGCCGCGAG+GGG 0.648655 6_1:+100168414 None:intergenic
GATCTTCACTTTGTCTACAG+GGG 0.654915 6_1:+100168129 None:intergenic
AAAATTGCTCTTGCCCCTCG+CGG 0.659211 6_1:-100168427 Msa0902250:CDS
GTGGAAACCCAAAAGCCTTG+AGG 0.661265 6_1:-100169042 Msa0902250:CDS
TCAAAAGAGAGCTAATTGTG+TGG 0.661747 6_1:-100169254 Msa0902250:CDS
GCTATGAAGAAGATCAACAA+AGG 0.662134 6_1:-100168001 Msa0902250:CDS
GAAACCCAAAAGCCTTGAGG+AGG 0.662349 6_1:-100169039 Msa0902250:CDS
ACAATTCTTGTGAACTACAA+GGG 0.663306 6_1:-100169505 Msa0902250:CDS
AATCAACGAACCGACTGCGG+CGG 0.664314 6_1:-100169293 Msa0902250:CDS
TGCTTTGCTATAGATGCTGA+TGG 0.666257 6_1:-100168388 Msa0902250:CDS
GCTGGAGCAGAACGATCGTG+TGG 0.667820 6_1:-100170175 Msa0902250:CDS
TTGCTGGTCTCAATGTAATG+CGG 0.689400 6_1:-100169318 Msa0902250:CDS
GCTGGAGACACGCACCTAGG+CGG 0.697716 6_1:-100169136 Msa0902250:CDS
ACTTTGATAGGAAGGCCGCG+AGG 0.705790 6_1:+100168412 None:intergenic
ACAGATGCGAGAGATTGCAG+AGG 0.728184 6_1:-100169434 Msa0902250:CDS
TCTGCCGAAGAAGAAACCAG+TGG 0.753215 6_1:-100168352 Msa0902250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTACAATTAAAAATA+AGG - chr6_1:100171132-100171151 Msa0902250:intron 10.0%
!! ACACAGAAATTAAAATATTT+AGG + chr6_1:100168241-100168260 None:intergenic 15.0%
!! ATTTCTGTGTATAAATTATT+AGG - chr6_1:100168251-100168270 Msa0902250:CDS 15.0%
!!! CAATAACAATAATATTTCTA+TGG + chr6_1:100168445-100168464 None:intergenic 15.0%
!!! TTTTAAAGTTGATTTTGAAA+AGG - chr6_1:100168552-100168571 Msa0902250:CDS 15.0%
!!! TTACTTTCTAAAAACATTTT+TGG - chr6_1:100170414-100170433 Msa0902250:intron 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr6_1:100171995-100172014 Msa0902250:intron 15.0%
!!! ATTATTGTTATTGCAATCAT+TGG - chr6_1:100168452-100168471 Msa0902250:CDS 20.0%
!! ACTTAAATCATTAGGAATAA+GGG + chr6_1:100168698-100168717 None:intergenic 20.0%
!! AACTTAAATCATTAGGAATA+AGG + chr6_1:100168699-100168718 None:intergenic 20.0%
!!! ATTCCTAATGATTTAAGTTT+TGG - chr6_1:100168700-100168719 Msa0902250:CDS 20.0%
!! TAACCAAAACTTAAATCATT+AGG + chr6_1:100168706-100168725 None:intergenic 20.0%
!! TAGATTGTATCATATTATCT+TGG - chr6_1:100169450-100169469 Msa0902250:CDS 20.0%
!! TATTGTGTATGAGTTTAATT+TGG - chr6_1:100169537-100169556 Msa0902250:CDS 20.0%
!! AACAATTAACATACTAACAT+CGG + chr6_1:100169735-100169754 None:intergenic 20.0%
!!! ATATTATAGATCACCATTTT+AGG - chr6_1:100170385-100170404 Msa0902250:intron 20.0%
!!! TATTATAGATCACCATTTTA+GGG - chr6_1:100170386-100170405 Msa0902250:intron 20.0%
!!! TTCATTTTAAATTGCTAACA+TGG - chr6_1:100170439-100170458 Msa0902250:intron 20.0%
!!! TCATTTTAAATTGCTAACAT+GGG - chr6_1:100170440-100170459 Msa0902250:intron 20.0%
!!! ATTTTTGGAAGTTTTGAAAA+TGG + chr6_1:100170560-100170579 None:intergenic 20.0%
!! GTTGATATGAAAATGAAAAT+AGG - chr6_1:100170654-100170673 Msa0902250:intron 20.0%
!!! AATATTTTTATCTTTGACCT+TGG - chr6_1:100171088-100171107 Msa0902250:intron 20.0%
! AAATTATTAGGAGAGTGATA+TGG - chr6_1:100168263-100168282 Msa0902250:CDS 25.0%
! AAGTGATTTAACACTATTCT+CGG + chr6_1:100168337-100168356 None:intergenic 25.0%
!!! GACTAATCGATTTTTTCATT+TGG + chr6_1:100168780-100168799 None:intergenic 25.0%
! AGCATTATAACAACAAAGAT+TGG - chr6_1:100168871-100168890 Msa0902250:CDS 25.0%
! ATAACAACAAAGATTGGATT+TGG - chr6_1:100168877-100168896 Msa0902250:CDS 25.0%
!! TTGAATATTGTATTGGCATA+GGG + chr6_1:100168928-100168947 None:intergenic 25.0%
!! TTTGAATATTGTATTGGCAT+AGG + chr6_1:100168929-100168948 None:intergenic 25.0%
! AAAAATTGGGTGTAAAAACA+AGG - chr6_1:100169007-100169026 Msa0902250:CDS 25.0%
! AGATTAAAGAATTGGAGATA+TGG - chr6_1:100169046-100169065 Msa0902250:CDS 25.0%
! TTGGTTATCAAATTTCTCAA+TGG - chr6_1:100169140-100169159 Msa0902250:CDS 25.0%
!! AATTTTATGTTCTTGGTAGA+AGG - chr6_1:100169311-100169330 Msa0902250:CDS 25.0%
!!! GGGATTTTATTTATGTAAAC+TGG - chr6_1:100169487-100169506 Msa0902250:CDS 25.0%
!!! ATGTTTGATGATCTAGTTTT+TGG - chr6_1:100169567-100169586 Msa0902250:CDS 25.0%
!!! TGTATAGTAGTATTTTGGAA+AGG + chr6_1:100169967-100169986 None:intergenic 25.0%
!! TGTAGTGTATAGTAGTATTT+TGG + chr6_1:100169972-100169991 None:intergenic 25.0%
!! TTTGAATTGGCTTCAAAATT+TGG + chr6_1:100170009-100170028 None:intergenic 25.0%
! TTTGTAGAGAAGATTTGAAT+TGG + chr6_1:100170022-100170041 None:intergenic 25.0%
! ACAATGGCAAAAAAATATGA+GGG - chr6_1:100170062-100170081 Msa0902250:CDS 25.0%
! GAAATTATTCACAATGATCA+AGG - chr6_1:100170158-100170177 Msa0902250:CDS 25.0%
! AACTAAAAATTAAACAGTGC+TGG + chr6_1:100170310-100170329 None:intergenic 25.0%
!! TGCAACATATTTGACATTTT+TGG + chr6_1:100170575-100170594 None:intergenic 25.0%
! TAGCATCTGCAAAAAATTAA+GGG + chr6_1:100170691-100170710 None:intergenic 25.0%
! TTAGCATCTGCAAAAAATTA+AGG + chr6_1:100170692-100170711 None:intergenic 25.0%
! TGTGAATCATTAAAATAAGC+AGG + chr6_1:100170944-100170963 None:intergenic 25.0%
!!! ATACATCAAGGTATTGATTT+TGG - chr6_1:100171367-100171386 Msa0902250:intron 25.0%
!!! CTATTACAAGAGTTTTTCAA+GGG - chr6_1:100171553-100171572 Msa0902250:intron 25.0%
!!! TATTACAAGAGTTTTTCAAG+GGG - chr6_1:100171554-100171573 Msa0902250:intron 25.0%
! GGATAATTTAGGAGATATTA+TGG - chr6_1:100171711-100171730 Msa0902250:intron 25.0%
!! TAACATAAGTTTTTGTCTTC+TGG + chr6_1:100171771-100171790 None:intergenic 25.0%
! AATATCATTCTTATTACCAC+TGG + chr6_1:100171978-100171997 None:intergenic 25.0%
! ATCAATTCTGCAATGATAAA+GGG - chr6_1:100172202-100172221 Msa0902250:intron 25.0%
! AATGATAAAGGGAAAAAGTT+TGG - chr6_1:100172213-100172232 Msa0902250:five_prime_UTR 25.0%
CACACTCAAGTAAAAAAACA+AGG - chr6_1:100168100-100168119 Msa0902250:CDS 30.0%
!!! TCTTCTTCTTCTTTTTTCTC+TGG - chr6_1:100168136-100168155 Msa0902250:CDS 30.0%
AGAACTCAAGTAACGTTAAA+AGG + chr6_1:100168187-100168206 None:intergenic 30.0%
GAGATTTCTTCCATCTTAAT+CGG - chr6_1:100168289-100168308 Msa0902250:CDS 30.0%
AGTGATTTAACACTATTCTC+GGG + chr6_1:100168336-100168355 None:intergenic 30.0%
GAATAGTGTTAAATCACTTG+AGG - chr6_1:100168338-100168357 Msa0902250:CDS 30.0%
!!! GAGTGTTTTAGCATCTATTA+CGG - chr6_1:100168360-100168379 Msa0902250:CDS 30.0%
TATTACGGCTCTTTCTATAA+CGG - chr6_1:100168375-100168394 Msa0902250:CDS 30.0%
ACTAAGAATCGGAAAAATGT+TGG - chr6_1:100168655-100168674 Msa0902250:CDS 30.0%
TCCAATTCTTTAATCTCGAA+TGG + chr6_1:100169042-100169061 None:intergenic 30.0%
TGGAGATATGGAAAAAATGT+TGG - chr6_1:100169058-100169077 Msa0902250:CDS 30.0%
AGATATGGAAAAAATGTTGG+AGG - chr6_1:100169061-100169080 Msa0902250:CDS 30.0%
TGAAAATCAGTTCTTGGAAT+TGG - chr6_1:100169087-100169106 Msa0902250:CDS 30.0%
! GTATATCCATTAAGTTGCTT+AGG - chr6_1:100169166-100169185 Msa0902250:CDS 30.0%
AAATGAGGCGTAAAGTAAAA+TGG - chr6_1:100169380-100169399 Msa0902250:CDS 30.0%
TTTATGTAAACTGGTTAACC+TGG - chr6_1:100169496-100169515 Msa0902250:CDS 30.0%
TTATGTAAACTGGTTAACCT+GGG - chr6_1:100169497-100169516 Msa0902250:CDS 30.0%
CATATACCAAATTAATACCC+AGG + chr6_1:100169517-100169536 None:intergenic 30.0%
AATACTAGTCACATTGAAGA+AGG - chr6_1:100169773-100169792 Msa0902250:intron 30.0%
CACAATGGCAAAAAAATATG+AGG - chr6_1:100170061-100170080 Msa0902250:CDS 30.0%
!! TACCAAATACAGTGTTGATT+GGG + chr6_1:100170268-100170287 None:intergenic 30.0%
!! TTACCAAATACAGTGTTGAT+TGG + chr6_1:100170269-100170288 None:intergenic 30.0%
AAAGTAAACATGCCCTAAAA+TGG + chr6_1:100170401-100170420 None:intergenic 30.0%
TGTGCTAGATAAAAGATAGA+AGG - chr6_1:100170487-100170506 Msa0902250:intron 30.0%
!!! AATTTTTTGCAGATGCTAAG+AGG - chr6_1:100170693-100170712 Msa0902250:intron 30.0%
TTGTAGTTCACAAGAATTGT+CGG + chr6_1:100170806-100170825 None:intergenic 30.0%
ACAATTCTTGTGAACTACAA+GGG - chr6_1:100170806-100170825 Msa0902250:intron 30.0%
! ATTTTTATCTTTGACCTTGG+CGG - chr6_1:100171091-100171110 Msa0902250:intron 30.0%
!! AAATAAGGTCTTTGAAGTCA+AGG - chr6_1:100171147-100171166 Msa0902250:intron 30.0%
! TGAAGACTTTGATAACAGAA+TGG - chr6_1:100171198-100171217 Msa0902250:intron 30.0%
AAGAACAAAGAGGATATTAG+TGG - chr6_1:100171250-100171269 Msa0902250:intron 30.0%
TATAACATCTAGGTCAATTG+TGG + chr6_1:100171350-100171369 None:intergenic 30.0%
TACCTTGATGTATAACATCT+AGG + chr6_1:100171360-100171379 None:intergenic 30.0%
!!! ATTTTGGTTCATCAATCACT+CGG - chr6_1:100171383-100171402 Msa0902250:intron 30.0%
CATATTCAATTGCTCAAACT+TGG + chr6_1:100171410-100171429 None:intergenic 30.0%
! GCTATTACAAGAGTTTTTCA+AGG - chr6_1:100171552-100171571 Msa0902250:intron 30.0%
ATGTTATACCTTTGTCTCTA+GGG - chr6_1:100171686-100171705 Msa0902250:intron 30.0%
ACAGTCTTGATTAATGTTTG+AGG - chr6_1:100171811-100171830 Msa0902250:intron 30.0%
CAGTCTTGATTAATGTTTGA+GGG - chr6_1:100171812-100171831 Msa0902250:intron 30.0%
ATAGCAAAGCATACTTTGAT+AGG + chr6_1:100171914-100171933 None:intergenic 30.0%
GATCAATTCTGCAATGATAA+AGG - chr6_1:100172201-100172220 Msa0902250:intron 30.0%
CTTCTTGATTTCACCTTACA+CGG + chr6_1:100168044-100168063 None:intergenic 35.0%
ACAAGAATGTCCGATTAAGA+TGG + chr6_1:100168302-100168321 None:intergenic 35.0%
GTGATTTAACACTATTCTCG+GGG + chr6_1:100168335-100168354 None:intergenic 35.0%
GGATTAAAGATTCATCAGAG+TGG - chr6_1:100168573-100168592 Msa0902250:CDS 35.0%
AAAGATTCATCAGAGTGGAT+TGG - chr6_1:100168578-100168597 Msa0902250:CDS 35.0%
! AAGATTCATCAGAGTGGATT+GGG - chr6_1:100168579-100168598 Msa0902250:CDS 35.0%
!! AGTGTTGAATTCAAGTTGAG+TGG - chr6_1:100168618-100168637 Msa0902250:CDS 35.0%
GTTCCACATCAACTAAGAAT+CGG - chr6_1:100168644-100168663 Msa0902250:CDS 35.0%
! TTTCCGATTCTTAGTTGATG+TGG + chr6_1:100168650-100168669 None:intergenic 35.0%
!!! GCGGGTTTTGAATATTGTAT+TGG + chr6_1:100168935-100168954 None:intergenic 35.0%
TTTAACCAATGTACCTTCCT+AGG + chr6_1:100168957-100168976 None:intergenic 35.0%
! AGGAAGGTACATTGGTTAAA+TGG - chr6_1:100168957-100168976 Msa0902250:CDS 35.0%
! GGAAGGTACATTGGTTAAAT+GGG - chr6_1:100168958-100168977 Msa0902250:CDS 35.0%
! TACATTGGTTAAATGGGAGA+GGG - chr6_1:100168964-100168983 Msa0902250:CDS 35.0%
TCGAGAGAGGGTAAAAAATT+GGG - chr6_1:100168994-100169013 Msa0902250:CDS 35.0%
GCCATTCGAGATTAAAGAAT+TGG - chr6_1:100169038-100169057 Msa0902250:CDS 35.0%
TATGGAAAAAATGTTGGAGG+AGG - chr6_1:100169064-100169083 Msa0902250:CDS 35.0%
TGTGAAAGTCAAACTGTCAA+AGG - chr6_1:100169115-100169134 Msa0902250:CDS 35.0%
! AGTCAAACTGTCAAAGGTTT+TGG - chr6_1:100169121-100169140 Msa0902250:CDS 35.0%
! TCCATTAAGTTGCTTAGGAT+TGG - chr6_1:100169171-100169190 Msa0902250:CDS 35.0%
ACCAATCCTAAGCAACTTAA+TGG + chr6_1:100169175-100169194 None:intergenic 35.0%
! ATTAAGTTGCTTAGGATTGG+TGG - chr6_1:100169174-100169193 Msa0902250:CDS 35.0%
! TTAAGTTGCTTAGGATTGGT+GGG - chr6_1:100169175-100169194 Msa0902250:CDS 35.0%
GAAAAGAAGTAAAACACTGC+AGG - chr6_1:100169269-100169288 Msa0902250:CDS 35.0%
! GAGGGACAATTTTATGTTCT+TGG - chr6_1:100169304-100169323 Msa0902250:CDS 35.0%
GGTTAACCTGGGTATTAATT+TGG - chr6_1:100169508-100169527 Msa0902250:CDS 35.0%
ACTAGCTATCACATTGAAGA+AGG - chr6_1:100169822-100169841 Msa0902250:intron 35.0%
CATTGAAGAAGGAAAAGTCA+TGG - chr6_1:100169833-100169852 Msa0902250:intron 35.0%
TTCATTCACTTGAAGCACAA+TGG - chr6_1:100170046-100170065 Msa0902250:intron 35.0%
TTTGTGAAAGCAACACAAGA+AGG + chr6_1:100170197-100170216 None:intergenic 35.0%
TTGCTTTCACAAATTCCCAA+AGG - chr6_1:100170204-100170223 Msa0902250:CDS 35.0%
! GTTAGAAGAAGCCTGATTTT+TGG + chr6_1:100170246-100170265 None:intergenic 35.0%
AACCCAATCAACACTGTATT+TGG - chr6_1:100170263-100170282 Msa0902250:exon 35.0%
ATGCTAAGAGGTTAATTGGA+AGG - chr6_1:100170705-100170724 Msa0902250:intron 35.0%
CAGTAGATCATTCTGAACAA+TGG + chr6_1:100170744-100170763 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG - chr6_1:100170747-100170766 Msa0902250:intron 35.0%
GACAATTCTTGTGAACTACA+AGG - chr6_1:100170805-100170824 Msa0902250:intron 35.0%
GTAATCACTGCATTCTTAAC+AGG + chr6_1:100170917-100170936 None:intergenic 35.0%
AATATCACCTGCATCTTTAG+TGG + chr6_1:100170975-100170994 None:intergenic 35.0%
!! CACAATTAGCTCTCTTTTGA+AGG + chr6_1:100171057-100171076 None:intergenic 35.0%
TCAAAAGAGAGCTAATTGTG+TGG - chr6_1:100171057-100171076 Msa0902250:intron 35.0%
AATGGTGAATCACTTTGTGA+AGG - chr6_1:100171216-100171235 Msa0902250:intron 35.0%
GACCTAGATGTTATACATCA+AGG - chr6_1:100171355-100171374 Msa0902250:intron 35.0%
!!! TTTTGGTTCATCAATCACTC+GGG - chr6_1:100171384-100171403 Msa0902250:intron 35.0%
! GAACCTCTTTGAAAAGTGTA+TGG - chr6_1:100171429-100171448 Msa0902250:intron 35.0%
! TGTCCATACACTTTTCAAAG+AGG + chr6_1:100171435-100171454 None:intergenic 35.0%
GATGTTATACCTTTGTCTCT+AGG - chr6_1:100171685-100171704 Msa0902250:intron 35.0%
TTATGGATGTCGTTATTCCT+AGG - chr6_1:100171728-100171747 Msa0902250:intron 35.0%
! TAAGTTTTTGTCTTCTGGAC+AGG + chr6_1:100171766-100171785 None:intergenic 35.0%
CAAAGCATACTTTGATAGGA+AGG + chr6_1:100171910-100171929 None:intergenic 35.0%
!! ATTACCACTGGTTTCTTCTT+CGG + chr6_1:100171966-100171985 None:intergenic 35.0%
!! CTTTGAAATTGTTAGCTTCC+TGG + chr6_1:100172054-100172073 None:intergenic 35.0%
GAAGTTCAAAAAGAAAGTCG+AGG - chr6_1:100172084-100172103 Msa0902250:intron 35.0%
AGTCGAGGCAAGAAATAATT+TGG - chr6_1:100172099-100172118 Msa0902250:intron 35.0%
AGTATTGTCTTTACAGTGTG+AGG - chr6_1:100172122-100172141 Msa0902250:intron 35.0%
TGATCTTCACTTTGTCTACA+GGG + chr6_1:100172186-100172205 None:intergenic 35.0%
TTGATCTTCACTTTGTCTAC+AGG + chr6_1:100172187-100172206 None:intergenic 35.0%
! TGTGTTTGTGGACTTTTTGA+AGG - chr6_1:100172264-100172283 Msa0902250:five_prime_UTR 35.0%
GCTATGAAGAAGATCAACAA+AGG - chr6_1:100172310-100172329 Msa0902250:five_prime_UTR 35.0%
GTACTTGTGTTAAGTCTCCT+AGG - chr6_1:100168728-100168747 Msa0902250:CDS 40.0%
! ATTGTATTGGCATAGGGTTG+TGG + chr6_1:100168922-100168941 None:intergenic 40.0%
ACAATATTCAAAACCCGCCT+AGG - chr6_1:100168937-100168956 Msa0902250:CDS 40.0%
! GTACATTGGTTAAATGGGAG+AGG - chr6_1:100168963-100168982 Msa0902250:CDS 40.0%
CTCGAGAGAGGGTAAAAAAT+TGG - chr6_1:100168993-100169012 Msa0902250:CDS 40.0%
AGGAGGTGAAAATCAGTTCT+TGG - chr6_1:100169081-100169100 Msa0902250:CDS 40.0%
TATGTTCTTGGTAGAAGGAC+TGG - chr6_1:100169316-100169335 Msa0902250:CDS 40.0%
GAGAGTAGATGGATGAAATG+AGG - chr6_1:100169365-100169384 Msa0902250:CDS 40.0%
ATCTTGGCGAGTCTTCTATT+TGG - chr6_1:100169466-100169485 Msa0902250:CDS 40.0%
TCTTGGCGAGTCTTCTATTT+GGG - chr6_1:100169467-100169486 Msa0902250:CDS 40.0%
CTTCAATGTGATAGCTAGTG+AGG + chr6_1:100169821-100169840 None:intergenic 40.0%
GAAAAGTCATGGCTTCTGAT+AGG - chr6_1:100169844-100169863 Msa0902250:intron 40.0%
AAATATGAGGGAGTTGCGAT+CGG - chr6_1:100170074-100170093 Msa0902250:CDS 40.0%
ACAAATTCCCAAAGGCTGAT+TGG - chr6_1:100170212-100170231 Msa0902250:CDS 40.0%
!! AGAAGAAGCCTGATTTTTGG+CGG + chr6_1:100170243-100170262 None:intergenic 40.0%
GCAGATGCTAAGAGGTTAAT+TGG - chr6_1:100170701-100170720 Msa0902250:intron 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG - chr6_1:100170886-100170905 Msa0902250:intron 40.0%
AAAGATGCAGGTGATATTGC+TGG - chr6_1:100170977-100170996 Msa0902250:intron 40.0%
! TTGCTGGTCTCAATGTAATG+CGG - chr6_1:100170993-100171012 Msa0902250:intron 40.0%
ACTTTGTGAAGGAGTTCAAG+AGG - chr6_1:100171227-100171246 Msa0902250:intron 40.0%
GTTCAAGAGGAAGAACAAAG+AGG - chr6_1:100171240-100171259 Msa0902250:intron 40.0%
ATCTAGGTCAATTGTGGCTT+CGG + chr6_1:100171344-100171363 None:intergenic 40.0%
TTGTCTTGCTGATGCTAAGA+TGG - chr6_1:100171465-100171484 Msa0902250:intron 40.0%
GTAGATGATGTTGTCCTTGT+TGG - chr6_1:100171499-100171518 Msa0902250:intron 40.0%
!! CTTCTAGGATTCCTAAAGTG+AGG - chr6_1:100171527-100171546 Msa0902250:intron 40.0%
TGTAATAGCTGCCTCACTTT+AGG + chr6_1:100171541-100171560 None:intergenic 40.0%
! ACATCTCGAAGTGTCAAGTT+TGG + chr6_1:100171670-100171689 None:intergenic 40.0%
! TATACCTTTGTCTCTAGGGA+CGG - chr6_1:100171690-100171709 Msa0902250:intron 40.0%
! TCTCTAGGGACGGATAATTT+AGG - chr6_1:100171700-100171719 Msa0902250:intron 40.0%
ACAGGAATAGAAGAGTTCCT+AGG + chr6_1:100171748-100171767 None:intergenic 40.0%
CATTAATCAAGACTGTGCGT+TGG + chr6_1:100171807-100171826 None:intergenic 40.0%
! TGCTTTGCTATAGATGCTGA+TGG - chr6_1:100171923-100171942 Msa0902250:intron 40.0%
CAGTGTGAGGAAAGTAATGA+AGG - chr6_1:100172135-100172154 Msa0902250:intron 40.0%
GATCTTCACTTTGTCTACAG+GGG + chr6_1:100172185-100172204 None:intergenic 40.0%
!! TTTGGTTGATGACAACCAAC+AGG - chr6_1:100172231-100172250 Msa0902250:five_prime_UTR 40.0%
ACACAAATGCATCTTCCTGT+TGG + chr6_1:100172249-100172268 None:intergenic 40.0%
GGAAGATGCATTTGTGTTTG+TGG - chr6_1:100172252-100172271 Msa0902250:five_prime_UTR 40.0%
TTGACAGTTCAGTCCGTGTA+AGG - chr6_1:100168028-100168047 Msa0902250:CDS 45.0%
TACGGCTCTTTCTATAACGG+AGG - chr6_1:100168378-100168397 Msa0902250:CDS 45.0%
CATTGGAGAGTGAGAAGTCA+CGG - chr6_1:100168469-100168488 Msa0902250:CDS 45.0%
TAAGTCTCCTAGGCACTCTT+TGG - chr6_1:100168738-100168757 Msa0902250:CDS 45.0%
AAGTCTCCTAGGCACTCTTT+GGG - chr6_1:100168739-100168758 Msa0902250:CDS 45.0%
! TAGGCACTCTTTGGGAGTTT+GGG - chr6_1:100168747-100168766 Msa0902250:CDS 45.0%
! ACTCTTTGGGAGTTTGGGAA+GGG - chr6_1:100168752-100168771 Msa0902250:CDS 45.0%
TATTGGCATAGGGTTGTGGA+GGG + chr6_1:100168918-100168937 None:intergenic 45.0%
TATTCAAAACCCGCCTAGGA+AGG - chr6_1:100168941-100168960 Msa0902250:CDS 45.0%
AACCAATGTACCTTCCTAGG+CGG + chr6_1:100168954-100168973 None:intergenic 45.0%
! TAGGATTGGTGGGTCTGTTA+TGG - chr6_1:100169185-100169204 Msa0902250:CDS 45.0%
AAACCAGATAGTTTCGCTGC+AGG - chr6_1:100169227-100169246 Msa0902250:CDS 45.0%
! TAGTTTCGCTGCAGGACTTT+TGG - chr6_1:100169235-100169254 Msa0902250:CDS 45.0%
TGCAGGCATAGAAGAAGTGA+GGG - chr6_1:100169286-100169305 Msa0902250:CDS 45.0%
TTGGTAGAAGGACTGGAAGT+GGG - chr6_1:100169323-100169342 Msa0902250:CDS 45.0%
TGGAAGTGGGGGATAGAAAT+GGG - chr6_1:100169336-100169355 Msa0902250:CDS 45.0%
CTTACGCATGTGTTGGAGTA+TGG - chr6_1:100170114-100170133 Msa0902250:CDS 45.0%
GAAAGCAACACAAGAAGGAG+TGG + chr6_1:100170192-100170211 None:intergenic 45.0%
TCTACTGTTGTGGCCCTTTA+AGG - chr6_1:100170757-100170776 Msa0902250:intron 45.0%
!! TGGCCCTTTAAGGTCATTTC+CGG - chr6_1:100170767-100170786 Msa0902250:intron 45.0%
GCACCGGAAATGACCTTAAA+GGG + chr6_1:100170773-100170792 None:intergenic 45.0%
! AGCACCGGAAATGACCTTAA+AGG + chr6_1:100170774-100170793 None:intergenic 45.0%
TCTTGTGAACTACAAGGGTG+AGG - chr6_1:100170811-100170830 Msa0902250:intron 45.0%
GATAATCAACGAACCGACTG+CGG - chr6_1:100171015-100171034 Msa0902250:intron 45.0%
TTTATCTTTGACCTTGGCGG+TGG - chr6_1:100171094-100171113 Msa0902250:intron 45.0%
TATCAAAGTCTTCACCGCCT+AGG + chr6_1:100171192-100171211 None:intergenic 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG + chr6_1:100171279-100171298 None:intergenic 45.0%
GTTGAGAACTGCTTGTGAGA+AGG - chr6_1:100171294-100171313 Msa0902250:intron 45.0%
CTGCTTGTGAGAAGGCAAAA+AGG - chr6_1:100171302-100171321 Msa0902250:intron 45.0%
GATGATGTTGTCCTTGTTGG+TGG - chr6_1:100171502-100171521 Msa0902250:intron 45.0%
!! TCCTTGTTGGTGGTTCTTCT+AGG - chr6_1:100171512-100171531 Msa0902250:intron 45.0%
TCCTAGAAGAACCACCAACA+AGG + chr6_1:100171516-100171535 None:intergenic 45.0%
!! TAAGAGCATCAACCCTGATG+AGG - chr6_1:100171588-100171607 Msa0902250:intron 45.0%
CATATGCAACAGCCTCATCA+GGG + chr6_1:100171603-100171622 None:intergenic 45.0%
TTATCCGTCCCTAGAGACAA+AGG + chr6_1:100171697-100171716 None:intergenic 45.0%
ACCAAGCAAGTTGTTCTGAC+TGG + chr6_1:100171852-100171871 None:intergenic 45.0%
AGAGCTTGAGAGAATGATCC+AGG - chr6_1:100172033-100172052 Msa0902250:intron 45.0%
!! CAAACTCCCAAAGAGTGCCT+AGG + chr6_1:100168748-100168767 None:intergenic 50.0%
! CTAGGCACTCTTTGGGAGTT+TGG - chr6_1:100168746-100168765 Msa0902250:CDS 50.0%
! CACTCTTTGGGAGTTTGGGA+AGG - chr6_1:100168751-100168770 Msa0902250:CDS 50.0%
! CTCTTTGGGAGTTTGGGAAG+GGG - chr6_1:100168753-100168772 Msa0902250:CDS 50.0%
! GTATTGGCATAGGGTTGTGG+AGG + chr6_1:100168919-100168938 None:intergenic 50.0%
ACCAATGTACCTTCCTAGGC+GGG + chr6_1:100168953-100168972 None:intergenic 50.0%
! GATTGGTGGGTCTGTTATGG+TGG - chr6_1:100169188-100169207 Msa0902250:CDS 50.0%
AGTCCTGCAGCGAAACTATC+TGG + chr6_1:100169233-100169252 None:intergenic 50.0%
CTGCAGGCATAGAAGAAGTG+AGG - chr6_1:100169285-100169304 Msa0902250:CDS 50.0%
CTTGGTAGAAGGACTGGAAG+TGG - chr6_1:100169322-100169341 Msa0902250:CDS 50.0%
TGGTAGAAGGACTGGAAGTG+GGG - chr6_1:100169324-100169343 Msa0902250:CDS 50.0%
CTGGAAGTGGGGGATAGAAA+TGG - chr6_1:100169335-100169354 Msa0902250:CDS 50.0%
AAGTGGGGGATAGAAATGGG+TGG - chr6_1:100169339-100169358 Msa0902250:CDS 50.0%
ATGGGTGGAAGGAGAGTAGA+TGG - chr6_1:100169354-100169373 Msa0902250:CDS 50.0%
GTTGCGATCGGAATTGACCT+TGG - chr6_1:100170086-100170105 Msa0902250:CDS 50.0%
CACATGCGTAAGTCATGCCA+AGG + chr6_1:100170106-100170125 None:intergenic 50.0%
GGCATGACTTACGCATGTGT+TGG - chr6_1:100170107-100170126 Msa0902250:CDS 50.0%
GGCATCACCAATCAGCCTTT+GGG + chr6_1:100170222-100170241 None:intergenic 50.0%
! TGGTGATGCCGCCAAAAATC+AGG - chr6_1:100170232-100170251 Msa0902250:CDS 50.0%
!! TGTCGGTTTGTCATCAGCAC+CGG + chr6_1:100170789-100170808 None:intergenic 50.0%
CAATCTCTCGCATCTGTGAG+AGG + chr6_1:100170874-100170893 None:intergenic 50.0%
ACAGATGCGAGAGATTGCAG+AGG - chr6_1:100170877-100170896 Msa0902250:intron 50.0%
CGAAGAGCCACTAAAGATGC+AGG - chr6_1:100170965-100170984 Msa0902250:intron 50.0%
CATCAAAAGTTCCACCGCCA+AGG + chr6_1:100171108-100171127 None:intergenic 50.0%
! TTTGAAGTCAAGGCCACTGC+TGG - chr6_1:100171157-100171176 Msa0902250:intron 50.0%
GTGGAAACCCAAAAGCCTTG+AGG - chr6_1:100171269-100171288 Msa0902250:intron 50.0%
GAAACCCAAAAGCCTTGAGG+AGG - chr6_1:100171272-100171291 Msa0902250:intron 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG + chr6_1:100171280-100171299 None:intergenic 50.0%
AGCAGTTCTCAACCTCCTCA+AGG + chr6_1:100171287-100171306 None:intergenic 50.0%
CCATATGCAACAGCCTCATC+AGG + chr6_1:100171604-100171623 None:intergenic 50.0%
CCTGATGAGGCTGTTGCATA+TGG - chr6_1:100171601-100171620 Msa0902250:intron 50.0%
! CAGGCTGCTTTGTTGAGTGA+AGG - chr6_1:100171634-100171653 Msa0902250:intron 50.0%
! GCCAGTCAGAACAACTTGCT+TGG - chr6_1:100171848-100171867 Msa0902250:intron 50.0%
AAAATTGCTCTTGCCCCTCG+CGG - chr6_1:100171884-100171903 Msa0902250:intron 50.0%
TCTGCCGAAGAAGAAACCAG+TGG - chr6_1:100171959-100171978 Msa0902250:intron 50.0%
TTTGTCTACAGGGGTGAGCT+TGG + chr6_1:100172176-100172195 None:intergenic 50.0%
! ACCCGCCTAGGAAGGTACAT+TGG - chr6_1:100168949-100168968 Msa0902250:CDS 55.0%
GGTAGAAGGACTGGAAGTGG+GGG - chr6_1:100169325-100169344 Msa0902250:CDS 55.0%
GGGGGATAGAAATGGGTGGA+AGG - chr6_1:100169343-100169362 Msa0902250:CDS 55.0%
CGCATGTGTTGGAGTATGGC+TGG - chr6_1:100170118-100170137 Msa0902250:CDS 55.0%
CGGCATCACCAATCAGCCTT+TGG + chr6_1:100170223-100170242 None:intergenic 55.0%
AATCAACGAACCGACTGCGG+CGG - chr6_1:100171018-100171037 Msa0902250:intron 55.0%
!! TGCATATGGTGCTGCTGTGC+AGG - chr6_1:100171615-100171634 Msa0902250:intron 55.0%
TTTGATAGGAAGGCCGCGAG+GGG + chr6_1:100171900-100171919 None:intergenic 55.0%
CTTTGATAGGAAGGCCGCGA+GGG + chr6_1:100171901-100171920 None:intergenic 55.0%
ACTTTGATAGGAAGGCCGCG+AGG + chr6_1:100171902-100171921 None:intergenic 55.0%
! AGAGGGTGTGCTCTCGAGAG+AGG - chr6_1:100168981-100169000 Msa0902250:CDS 60.0%
! GAGGGTGTGCTCTCGAGAGA+GGG - chr6_1:100168982-100169001 Msa0902250:CDS 60.0%
GCTGGAGCAGAACGATCGTG+TGG - chr6_1:100170136-100170155 Msa0902250:CDS 60.0%
TATGCAAGAGCCGCCGCAGT+CGG + chr6_1:100171031-100171050 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG - chr6_1:100171031-100171050 Msa0902250:intron 60.0%
TAGGTGCGTGTCTCCAGCAG+TGG + chr6_1:100171173-100171192 None:intergenic 60.0%
ACTGCTGGAGACACGCACCT+AGG - chr6_1:100171172-100171191 Msa0902250:intron 60.0%
GCTGGAGACACGCACCTAGG+CGG - chr6_1:100171175-100171194 Msa0902250:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 100167997 100172336 100167997 ID=Msa0902250;Name=Msa0902250
chr6_1 mRNA 100167997 100172336 100167997 ID=Msa0902250-mRNA-1;Parent=Msa0902250;Name=Msa0902250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=234|0.66|0.5|1|0.66|0.5|4|0|603
chr6_1 exon 100167997 100168500 100167997 ID=Msa0902250-mRNA-1:exon:17714;Parent=Msa0902250-mRNA-1
chr6_1 exon 100168541 100169628 100168541 ID=Msa0902250-mRNA-1:exon:17713;Parent=Msa0902250-mRNA-1
chr6_1 exon 100170049 100170377 100170049 ID=Msa0902250-mRNA-1:exon:17712;Parent=Msa0902250-mRNA-1
chr6_1 exon 100172212 100172336 100172212 ID=Msa0902250-mRNA-1:exon:17711;Parent=Msa0902250-mRNA-1
chr6_1 five_prime_UTR 100172212 100172336 100172212 ID=Msa0902250-mRNA-1:five_prime_utr;Parent=Msa0902250-mRNA-1
chr6_1 five_prime_UTR 100170269 100170377 100170269 ID=Msa0902250-mRNA-1:five_prime_utr;Parent=Msa0902250-mRNA-1
chr6_1 CDS 100170049 100170268 100170049 ID=Msa0902250-mRNA-1:cds;Parent=Msa0902250-mRNA-1
chr6_1 CDS 100168541 100169628 100168541 ID=Msa0902250-mRNA-1:cds;Parent=Msa0902250-mRNA-1
chr6_1 CDS 100167997 100168500 100167997 ID=Msa0902250-mRNA-1:cds;Parent=Msa0902250-mRNA-1
Gene Sequence

>Msa0902250

ATGGCAAAAAAATATGAGGGAGTTGCGATCGGAATTGACCTTGGCATGACTTACGCATGTGTTGGAGTATGGCTGGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACCACTCCTTCTTGTGTTGCTTTCACAAATTCCCAAAGGCTGATTGGTGATGCCGCCAAAAATCAGGCTTCTTCTAACCCAATCAACACTGTATTTGATGCTAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATTTCCGGTGCTGATGACAAACCGACAATTCTTGTGAACTACAAGGGTGAGGAAAAGCACTTTGTTGCTGAAGAAATATCATCTGTGATCCTCTCACAGATGCGAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGCAGTGATTACTGTACCTGCTTATTTTAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATCAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAATTGTGTGGATAAGAGAAATATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATTAAAAATAAGGTCTTTGAAGTCAAGGCCACTGCTGGAGACACGCACCTAGGCGGTGAAGACTTTGATAACAGAATGGTGAATCACTTTGTGAAGGAGTTCAAGAGGAAGAACAAAGAGGATATTAGTGGAAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAAGGCAAAAAGGACACTTTCATATAACACCGAAGCCACAATTGACCTAGATGTTATACATCAAGGTATTGATTTTGGTTCATCAATCACTCGGGCCAAGTTTGAGCAATTGAATATGAACCTCTTTGAAAAGTGTATGGACATTGTTAATAGTTGTCTTGCTGATGCTAAGATGGACAAGAATAGTGTAGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCTAAAGTGAGGCAGCTATTACAAGAGTTTTTCAAGGGGAAAGAATTATGTAAGAGCATCAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGAAGGTACGACTGTTCCAAACTTGACACTTCGAGATGTTATACCTTTGTCTCTAGGGACGGATAATTTAGGAGATATTATGGATGTCGTTATTCCTAGGAACTCTTCTATTCCTGTCCAGAAGACAAAAACTTATGTTACTGGTGAGAGAATAGTAGCCAGTCAGAACAACTTGCTTGGTTTATTTGAACTCAAAATTGCTCTTGCCCCTCGCGGCCTTCCTATCAAAGTATGCTTTGCTATAGATGCTGATGGTATATTAAATGTATCTGCCGAAGAAGAAACCAGTGGTAATAAGAATGATATTACAATAACTAATGAAAATGGCAGACTATCAAAAGAAGAGCTTGAGAGAATGATCCAGGAAGCTAACAATTTCAAAGCTCAAGATATGAAGTTCAAAAAGAAAGTCGAGGCAAGAAATAATTTGGAGTATTGTCTTTACAGTGTGAGGAAAGTAATGAAGGATGACTGTGTTAGTTCCAAGCTCACCCCTGTAGACAAAGTGAAGATCAATTCTGCAATGATAAAGGGAAAAAGTTTGGTTGATGACAACCAACAGGAAGATGCATTTGTGTTTGTGGACTTTTTGAAGGAGCTTGAGAGCATCTTTGAATCTGCTATGAAGAAGATCAACAAAGGTTAA
Protein sequence

>Msa0902250

MAKKYEGVAIGIDLGMTYACVGVWLEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPINTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGADDKPTILVNYKGEEKHFVAEEISSVILSQMREIAEAFLESPVKNAVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTIKNKVFEVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACEKAKRTLSYNTEATIDLDVIHQGIDFGSSITRAKFEQLNMNLFEKCMDIVNSCLADAKMDKNSVDDVVLVGGSSRIPKVRQLLQEFFKGKELCKSINPDEAVAYGAAVQAALLSEGTTVPNLTLRDVIPLSLGTDNLGDIMDVVIPRNSSIPVQKTKTYVTGERIVASQNNLLGLFELKIALAPRGLPIKVCFAIDADGILNVSAEEETSGNKNDITITNENGRLSKEELERMIQEANNFKAQDMKFKKKVEARNNLEYCLYSVRKVMKDDCVSSKLTPVDKVKINSAMIKGKSLVDDNQQEDAFVFVDFLKELESIFESAMKKINKG*