AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1142240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142240 MtrunA17_Chr7g0223711 81.260 619 100 3 1 603 1 619 0.0 1029
Msa1142240 MtrunA17_Chr8g0350731 80.744 618 104 2 1 603 29 646 0.0 1015
Msa1142240 MtrunA17_Chr7g0223631 81.553 618 85 4 1 603 1 604 0.0 1009
Msa1142240 MtrunA17_Chr7g0223751 76.375 618 131 2 1 603 1 618 0.0 970
Msa1142240 MtrunA17_Chr7g0223701 77.193 627 119 4 1 603 1 627 0.0 965
Msa1142240 MtrunA17_Chr7g0223621 75.000 612 138 2 1 597 1 612 0.0 931
Msa1142240 MtrunA17_Chr7g0223031 72.594 613 153 2 1 598 1 613 0.0 925
Msa1142240 MtrunA17_Chr7g0223731 73.008 615 151 2 1 600 1 615 0.0 924
Msa1142240 MtrunA17_Chr7g0223741 72.362 597 149 3 1 581 1 597 0.0 892
Msa1142240 MtrunA17_Chr7g0248131 71.910 623 155 6 1 603 1 623 0.0 890
Msa1142240 MtrunA17_Chr7g0248151 72.303 621 154 4 1 603 1 621 0.0 879
Msa1142240 MtrunA17_Chr7g0223681 80.492 528 88 2 91 603 2 529 0.0 845
Msa1142240 MtrunA17_Chr7g0223541 71.978 546 137 3 74 603 31 576 0.0 808
Msa1142240 MtrunA17_Chr7g0223181 65.858 618 191 6 1 600 1 616 0.0 808
Msa1142240 MtrunA17_Chr7g0221661 65.139 611 197 3 1 595 1 611 0.0 808
Msa1142240 MtrunA17_Chr7g0262821 65.378 621 195 6 1 603 1 619 0.0 803
Msa1142240 MtrunA17_Chr4g0031321 66.066 610 187 6 1 592 1 608 0.0 801
Msa1142240 MtrunA17_Chr4g0031301 65.902 610 188 6 1 592 1 608 0.0 800
Msa1142240 MtrunA17_Chr7g0223291 64.734 621 199 6 1 603 1 619 0.0 798
Msa1142240 MtrunA17_Chr7g0223801 63.875 609 204 3 1 594 1 608 0.0 796
Msa1142240 MtrunA17_Chr7g0223781 64.763 613 200 3 1 598 1 612 0.0 795
Msa1142240 MtrunA17_Chr2g0298851 63.371 617 207 6 1 599 1 616 0.0 792
Msa1142240 MtrunA17_Chr5g0427901 62.620 626 207 4 1 599 1 626 0.0 789
Msa1142240 MtrunA17_Chr7g0233311 63.269 618 207 5 1 599 1 617 0.0 784
Msa1142240 MtrunA17_Chr2g0293581 63.710 620 206 6 1 601 1 620 0.0 784
Msa1142240 MtrunA17_Chr7g0223851 62.945 618 212 4 1 601 10 627 0.0 783
Msa1142240 MtrunA17_Chr7g0223721 62.662 616 213 4 1 599 1 616 0.0 780
Msa1142240 MtrunA17_Chr4g0073741 63.768 621 204 7 1 603 1 618 0.0 780
Msa1142240 MtrunA17_Chr7g0225671 62.764 615 211 5 3 601 12 624 0.0 775
Msa1142240 MtrunA17_Chr2g0298861 61.624 628 212 6 1 599 1 628 0.0 775
Msa1142240 MtrunA17_Chr4g0040931 62.193 611 214 4 1 594 1 611 0.0 764
Msa1142240 MtrunA17_Chr7g0223821 61.974 618 215 4 1 598 1 618 0.0 753
Msa1142240 MtrunA17_Chr2g0287631 62.885 617 211 5 1 599 1 617 0.0 745
Msa1142240 MtrunA17_Chr7g0217971 61.383 593 190 3 1 578 1 569 0.0 741
Msa1142240 MtrunA17_Chr2g0296391 67.614 528 154 4 1 511 1 528 0.0 728
Msa1142240 MtrunA17_Chr7g0233301 60.596 604 215 6 1 599 1 586 0.0 723
Msa1142240 MtrunA17_Chr4g0012541 59.061 618 227 5 1 601 1 609 0.0 718
Msa1142240 MtrunA17_Chr7g0223831 58.429 611 209 6 1 594 1 583 0.0 701
Msa1142240 MtrunA17_Chr6g0462601 58.481 619 234 5 1 600 1 615 0.0 700
Msa1142240 MtrunA17_Chr8g0390821 56.353 669 208 10 1 600 1 654 0.0 699
Msa1142240 MtrunA17_Chr2g0293601 67.857 504 139 4 1 501 1 484 0.0 691
Msa1142240 MtrunA17_Chr7g0215261 57.749 613 205 6 1 594 1 578 0.0 691
Msa1142240 MtrunA17_Chr7g0228281 56.888 617 206 6 1 601 62 634 0.0 684
Msa1142240 MtrunA17_Chr6g0462681 57.512 619 243 5 1 601 1 617 0.0 684
Msa1142240 MtrunA17_Chr2g0331381 63.127 518 143 4 10 526 7 477 0.0 671
Msa1142240 MtrunA17_Chr6g0462711 56.078 617 248 5 8 602 9 624 0.0 650
Msa1142240 MtrunA17_Chr6g0462771 57.439 578 222 5 8 563 8 583 0.0 637
Msa1142240 MtrunA17_Chr6g0462641 54.167 624 262 5 1 602 1 622 0.0 636
Msa1142240 MtrunA17_Chr2g0284681 56.071 560 220 8 9 544 8 565 0.0 614
Msa1142240 MtrunA17_Chr2g0293561 73.529 374 99 0 1 374 1 374 0.0 597
Msa1142240 MtrunA17_Chr2g0299821 57.303 534 167 6 1 523 1 484 0.0 593
Msa1142240 MtrunA17_Chr8g0388671 52.292 589 255 9 7 575 36 618 0.0 590
Msa1142240 MtrunA17_Chr8g0388761 51.952 589 257 9 7 575 36 618 0.0 590
Msa1142240 MtrunA17_Chr1g0166551 52.694 594 181 5 9 599 5 501 0.0 590
Msa1142240 MtrunA17_Chr6g0462611 55.515 544 226 3 74 601 22 565 0.0 581
Msa1142240 MtrunA17_Chr2g0299921 68.873 408 116 4 3 409 1023 1420 0.0 569
Msa1142240 MtrunA17_Chr2g0299921 68.638 389 117 3 3 390 1407 1791 2.34e-169 526
Msa1142240 MtrunA17_Chr2g0299791 69.409 389 115 2 1 389 1034 1418 0.0 551
Msa1142240 MtrunA17_Chr2g0299851 66.923 390 125 2 1 390 1030 1415 9.01e-180 546
Msa1142240 MtrunA17_Chr2g0299881 66.327 392 124 4 2 389 1031 1418 2.00e-171 525
Msa1142240 MtrunA17_Chr2g0299881 59.701 67 27 0 184 250 1409 1475 4.54e-18 89.0
Msa1142240 MtrunA17_Chr2g0293271 57.920 423 109 3 14 436 36 389 1.51e-165 478
Msa1142240 MtrunA17_Chr6g0462861 46.667 585 275 10 1 564 1 569 1.04e-162 479
Msa1142240 MtrunA17_Chr1g0151991 71.478 291 83 0 1 291 1 291 3.08e-153 442
Msa1142240 MtrunA17_Chr7g0245521 73.626 273 72 0 1 273 1 273 9.33e-152 437
Msa1142240 MtrunA17_Chr2g0279901 45.811 561 259 13 10 545 57 597 1.02e-150 450
Msa1142240 MtrunA17_Chr4g0049501 44.563 561 267 12 10 545 54 595 6.03e-147 440
Msa1142240 MtrunA17_Chr2g0277021 44.165 557 276 12 10 545 72 614 4.57e-138 418
Msa1142240 MtrunA17_Chr7g0223761 51.811 359 139 4 241 594 3 332 1.05e-116 351
Msa1142240 MtrunA17_Chr7g0223671 85.946 185 26 0 74 258 8 192 3.06e-115 342
Msa1142240 MtrunA17_Chr7g0245531 55.272 313 124 3 305 601 2 314 7.87e-110 332
Msa1142240 MtrunA17_Chr1g0188601 76.440 191 45 0 92 282 1 191 7.25e-105 315
Msa1142240 MtrunA17_Chr6g0462631 51.818 330 109 5 91 415 13 297 1.85e-102 312
Msa1142240 MtrunA17_Chr6g0462751 48.680 341 114 4 74 410 19 302 3.84e-97 299
Msa1142240 MtrunA17_Chr1g0152001 52.542 295 125 3 315 594 1 295 3.03e-96 297
Msa1142240 MtrunA17_Chr7g0223771 75.163 153 38 0 93 245 1 153 1.03e-79 248
Msa1142240 MtrunA17_Chr6g0462791 66.854 178 58 1 109 286 2 178 2.99e-78 245
Msa1142240 MtrunA17_Chr2g0331901 35.160 438 268 5 10 434 4 438 1.18e-77 263
Msa1142240 MtrunA17_Chr4g0004331 35.294 442 262 6 10 434 4 438 2.17e-76 259
Msa1142240 MtrunA17_Chr5g0444001 35.116 430 270 6 10 433 4 430 7.13e-74 246
Msa1142240 MtrunA17_Chr1g0188611 51.186 295 120 5 322 599 1 288 2.11e-73 237
Msa1142240 MtrunA17_Chr4g0046881 75.342 146 33 1 130 275 9 151 1.80e-71 226
Msa1142240 MtrunA17_Chr5g0394391 33.532 504 292 15 8 478 28 521 4.97e-71 239
Msa1142240 MtrunA17_Chr3g0098761 34.129 419 271 4 10 427 4 418 6.94e-71 243
Msa1142240 MtrunA17_Chr7g0223861 74.046 131 34 0 78 208 4 134 1.15e-63 206
Msa1142240 MtrunA17_Chr6g0462701 54.444 180 58 1 91 270 13 168 4.97e-56 186
Msa1142240 MtrunA17_Chr3g0120101 31.267 371 237 5 36 391 55 422 6.36e-55 200
Msa1142240 MtrunA17_Chr4g0064621 32.184 522 302 17 8 487 139 650 1.00e-50 186
Msa1142240 MtrunA17_Chr6g0481391 64.754 122 40 1 38 159 13 131 2.79e-47 162
Msa1142240 MtrunA17_Chr5g0394221 40.458 262 136 5 291 534 61 320 1.45e-45 165
Msa1142240 MtrunA17_Chr4g0046871 72.381 105 28 1 333 436 3 107 2.67e-44 153
Msa1142240 MtrunA17_Chr4g0060241 28.402 507 310 16 8 480 19 506 1.98e-43 163
Msa1142240 MtrunA17_Chr5g0394231 36.564 227 93 4 74 299 5 181 1.60e-41 148
Msa1142240 MtrunA17_Chr5g0442171 33.945 327 185 12 170 472 1 320 7.97e-40 148
Msa1142240 MtrunA17_Chr7g0223691 86.301 73 10 0 1 73 1 73 1.53e-39 139
Msa1142240 MtrunA17_Chr7g0245541 40.500 200 104 2 416 600 1 200 4.29e-39 142
Msa1142240 MtrunA17_Chr6g0462691 48.592 142 57 2 322 447 1 142 1.61e-35 131
Msa1142240 MtrunA17_Chr6g0481381 72.973 74 20 0 176 249 1 74 3.74e-31 119
Msa1142240 MtrunA17_Chr6g0481381 37.895 95 58 1 499 592 75 169 1.29e-11 63.9
Msa1142240 MtrunA17_Chr1g0188591 73.973 73 19 0 1 73 1 73 8.56e-31 115
Msa1142240 MtrunA17_Chr6g0462621 72.603 73 18 1 1 73 1 71 7.80e-29 109
Msa1142240 MtrunA17_Chr7g0223791 69.512 82 17 3 56 137 18 91 1.17e-27 109
Msa1142240 MtrunA17_Chr7g0223791 36.559 93 59 0 465 557 89 181 1.72e-15 75.1
Msa1142240 MtrunA17_Chr7g0223881 55.422 83 36 1 281 363 2 83 1.72e-23 94.7
Msa1142240 MtrunA17_Chr7g0221651 51.190 84 41 0 215 298 1 84 1.68e-22 92.0
Msa1142240 MtrunA17_Chr7g0223661 46.491 114 17 2 315 427 1 71 1.53e-20 86.3
Msa1142240 MtrunA17_Chr7g0223871 35.156 128 82 1 475 601 7 134 6.56e-17 77.8
Msa1142240 MtrunA17_Chr6g0462801 56.061 66 24 1 322 382 1 66 2.30e-15 71.2
Msa1142240 MtrunA17_Chr2g0299891 72.093 43 12 0 315 357 1 43 1.83e-14 68.6
Msa1142240 MtrunA17_Chr2g0284661 46.988 83 39 3 368 448 61 140 3.23e-12 64.3
Msa1142240 MtrunA17_Chr2g0284661 53.333 60 26 1 225 282 5 64 4.62e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142240 AT3G12580.1 65.700 621 193 6 1 603 1 619 0.0 808
Msa1142240 AT5G02500.1 64.078 618 202 6 1 600 1 616 0.0 794
Msa1142240 AT5G02490.1 63.592 618 205 6 1 600 1 616 0.0 787
Msa1142240 AT3G09440.1 64.401 618 200 6 1 600 1 616 0.0 785
Msa1142240 AT3G09440.4 64.401 618 200 6 1 600 1 616 0.0 785
Msa1142240 AT3G09440.2 64.401 618 200 6 1 600 1 616 0.0 785
Msa1142240 AT3G09440.3 64.401 618 200 6 1 600 1 616 0.0 785
Msa1142240 AT1G56410.1 62.802 621 209 7 1 603 1 617 0.0 773
Msa1142240 AT1G16030.1 62.802 621 210 7 1 603 1 618 0.0 771
Msa1142240 AT5G02500.2 74.550 389 97 1 1 389 1 387 0.0 618
Msa1142240 AT5G02500.2 41.935 93 54 0 500 592 386 478 1.31e-12 70.9
Msa1142240 AT5G28540.1 52.145 606 264 9 7 592 35 634 0.0 603
Msa1142240 AT5G42020.1 51.815 606 266 9 7 592 35 634 0.0 601
Msa1142240 AT5G42020.3 51.815 606 266 9 7 592 40 639 0.0 600
Msa1142240 AT1G09080.2 50.897 613 276 8 7 600 40 646 0.0 583
Msa1142240 AT1G09080.1 50.897 613 276 8 7 600 50 656 0.0 583
Msa1142240 AT5G42020.2 54.321 486 196 9 7 472 35 514 1.16e-173 506
Msa1142240 AT5G09590.1 44.685 555 271 11 10 543 60 599 8.66e-146 437
Msa1142240 AT4G37910.1 44.920 561 265 12 10 545 55 596 1.17e-141 427
Msa1142240 AT4G37910.2 44.920 561 265 12 10 545 55 596 1.17e-141 427
Msa1142240 AT4G24280.1 43.986 557 277 12 10 545 81 623 1.14e-137 418
Msa1142240 AT5G49910.1 43.806 557 278 12 10 545 81 623 2.93e-137 417
Msa1142240 AT1G11660.4 31.333 600 339 10 10 543 4 596 1.33e-82 275
Msa1142240 AT1G11660.3 31.333 600 339 10 10 543 4 596 1.33e-82 275
Msa1142240 AT1G11660.1 31.333 600 339 10 10 543 4 596 1.33e-82 275
Msa1142240 AT1G79930.2 34.932 438 269 4 10 434 4 438 2.44e-78 264
Msa1142240 AT1G79920.1 35.227 440 265 5 10 434 4 438 3.35e-78 263
Msa1142240 AT1G79920.3 35.227 440 265 5 10 434 4 438 3.56e-78 263
Msa1142240 AT1G79920.2 35.227 440 265 5 10 434 4 438 3.56e-78 263
Msa1142240 AT1G79920.4 35.227 440 265 5 10 434 4 438 3.56e-78 263
Msa1142240 AT1G79930.1 34.932 438 269 4 10 434 4 438 7.18e-78 263
Msa1142240 AT1G11660.2 31.972 563 312 9 47 543 2 559 2.92e-77 260
Msa1142240 AT2G32120.1 31.907 514 302 15 8 491 29 524 2.35e-63 219
Msa1142240 AT2G32120.2 31.907 514 302 15 8 491 29 524 2.35e-63 219
Msa1142240 AT4G16660.1 29.950 404 260 8 6 391 23 421 1.34e-54 199
Msa1142240 AT4G16660.2 29.950 404 260 8 6 391 47 445 1.74e-54 199

Find 125 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_4:-16333213 None:intergenic
TTTGAATTGGCTTCAAAATT+TGG 0.143460 7_4:-16331942 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 7_4:+16332693 Msa1142240:CDS
AACCCAATCAACACTGTATT+TGG 0.172484 7_4:+16332199 Msa1142240:CDS
ATACATCAAGGTATTGATTT+TGG 0.175194 7_4:+16333303 Msa1142240:CDS
TCCTTGTTGGTGGTTCTTCT+AGG 0.229614 7_4:+16333448 Msa1142240:CDS
TGTAGTGTATAGTAGTATTT+TGG 0.234038 7_4:-16331905 None:intergenic
TGGCCCTTTAAGGTCATTTC+CGG 0.243786 7_4:+16332703 Msa1142240:CDS
GCAGATGCTAAGAGGTTAAT+TGG 0.256643 7_4:+16332637 Msa1142240:intron
TCTCTAGGGACGGATAATTT+AGG 0.259656 7_4:+16333636 Msa1142240:CDS
AGTCGAGGCAAGAAATAATT+TGG 0.269785 7_4:+16334035 Msa1142240:CDS
GGATAATTTAGGAGATATTA+TGG 0.283036 7_4:+16333647 Msa1142240:CDS
TGTAATAGCTGCCTCACTTT+AGG 0.285625 7_4:-16333474 None:intergenic
GATCAATTCTGCAATGATAA+AGG 0.293473 7_4:+16334137 Msa1142240:CDS
CTTTGAAATTGTTAGCTTCC+TGG 0.309267 7_4:-16333987 None:intergenic
ATTACAATAACTAATGAAAA+TGG 0.320614 7_4:+16333931 Msa1142240:CDS
CGGCATCACCAATCAGCCTT+TGG 0.346998 7_4:-16332156 None:intergenic
AGCACCGGAAATGACCTTAA+AGG 0.349583 7_4:-16332707 None:intergenic
GTAATCACTGCATTCTTAAC+AGG 0.359063 7_4:-16332850 None:intergenic
CTTACGCATGTGTTGGAGTA+TGG 0.368503 7_4:+16332050 Msa1142240:CDS
TGCATATGGTGCTGCTGTGC+AGG 0.381055 7_4:+16333551 Msa1142240:CDS
CTGCTTGTGAGAAGGCAAAA+AGG 0.381815 7_4:+16333238 Msa1142240:CDS
ATAGCAAAGCATACTTTGAT+AGG 0.383076 7_4:-16333847 None:intergenic
TTACCAAATACAGTGTTGAT+TGG 0.383287 7_4:-16332202 None:intergenic
CATATTCAATTGCTCAAACT+TGG 0.389972 7_4:-16333343 None:intergenic
CCATATGCAACAGCCTCATC+AGG 0.392319 7_4:-16333537 None:intergenic
GTAGATGATGTTGTCCTTGT+TGG 0.401743 7_4:+16333435 Msa1142240:CDS
ACATCTCGAAGTGTCAAGTT+TGG 0.401751 7_4:-16333603 None:intergenic
TTTGTAGAGAAGATTTGAAT+TGG 0.406011 7_4:-16331955 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 7_4:-16332908 None:intergenic
TTGATCTTCACTTTGTCTAC+AGG 0.406918 7_4:-16334120 None:intergenic
TACCAAATACAGTGTTGATT+GGG 0.407934 7_4:-16332201 None:intergenic
ATTACCACTGGTTTCTTCTT+CGG 0.414017 7_4:-16333899 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_4:+16332967 Msa1142240:CDS
ACAAATTCCCAAAGGCTGAT+TGG 0.415818 7_4:+16332148 Msa1142240:CDS
ATCAATTCTGCAATGATAAA+GGG 0.417003 7_4:+16334138 Msa1142240:CDS
ATCTAGGTCAATTGTGGCTT+CGG 0.423568 7_4:-16333277 None:intergenic
GGCATCACCAATCAGCCTTT+GGG 0.424089 7_4:-16332155 None:intergenic
CTTCTTGATTTCACCTTACA+CGG 0.429015 7_4:-16329977 None:intergenic
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_4:+16332913 Msa1142240:CDS
GCACCGGAAATGACCTTAAA+GGG 0.431309 7_4:-16332706 None:intergenic
TTTGAAGTCAAGGCCACTGC+TGG 0.434747 7_4:+16333093 Msa1142240:CDS
AAGAACAAAGAGGATATTAG+TGG 0.439661 7_4:+16333186 Msa1142240:CDS
TTGACAGTTCAGTCCGTGTA+AGG 0.440371 7_4:+16329964 Msa1142240:five_prime_UTR
GATGTTATACCTTTGTCTCT+AGG 0.450281 7_4:+16333621 Msa1142240:CDS
GAACCTCTTTGAAAAGTGTA+TGG 0.453646 7_4:+16333365 Msa1142240:CDS
GGAAGATGCATTTGTGTTTG+TGG 0.453953 7_4:+16334188 Msa1142240:CDS
AGAGCTTGAGAGAATGATCC+AGG 0.460217 7_4:+16333969 Msa1142240:CDS
TTTATCTTTGACCTTGGCGG+TGG 0.462714 7_4:+16333030 Msa1142240:CDS
TTGTAGTTCACAAGAATTGT+CGG 0.473999 7_4:-16332739 None:intergenic
TTTGTCTACAGGGGTGAGCT+TGG 0.474241 7_4:-16334109 None:intergenic
TTTGGTTGATGACAACCAAC+AGG 0.478343 7_4:+16334167 Msa1142240:CDS
TTATGGATGTCGTTATTCCT+AGG 0.478554 7_4:+16333664 Msa1142240:CDS
CCTGATGAGGCTGTTGCATA+TGG 0.478680 7_4:+16333537 Msa1142240:CDS
ATGTTATACCTTTGTCTCTA+GGG 0.479524 7_4:+16333622 Msa1142240:CDS
AATATCATTCTTATTACCAC+TGG 0.490634 7_4:-16333911 None:intergenic
CGCATGTGTTGGAGTATGGC+TGG 0.491560 7_4:+16332054 Msa1142240:CDS
GAAATTATTCACAATGATCA+AGG 0.492859 7_4:+16332094 Msa1142240:CDS
GATGATGTTGTCCTTGTTGG+TGG 0.496358 7_4:+16333438 Msa1142240:CDS
TTGTCTTGCTGATGCTAAGA+TGG 0.502095 7_4:+16333401 Msa1142240:CDS
CAGTGTGAGGAAAGTAATGA+AGG 0.504146 7_4:+16334071 Msa1142240:CDS
TGTGAATCATTAAAATAAGC+AGG 0.511579 7_4:-16332877 None:intergenic
GCCAGTCAGAACAACTTGCT+TGG 0.519312 7_4:+16333784 Msa1142240:CDS
AAATAAGGTCTTTGAAGTCA+AGG 0.528245 7_4:+16333083 Msa1142240:CDS
TACCTTGATGTATAACATCT+AGG 0.530064 7_4:-16333293 None:intergenic
TGTCGGTTTGTCATCAGCAC+CGG 0.535167 7_4:-16332722 None:intergenic
ACCAAGCAAGTTGTTCTGAC+TGG 0.546188 7_4:-16333785 None:intergenic
AGTATTGTCTTTACAGTGTG+AGG 0.546529 7_4:+16334058 Msa1142240:CDS
CAAAGCATACTTTGATAGGA+AGG 0.555286 7_4:-16333843 None:intergenic
GACCTAGATGTTATACATCA+AGG 0.558168 7_4:+16333291 Msa1142240:CDS
TGATCTTCACTTTGTCTACA+GGG 0.559552 7_4:-16334119 None:intergenic
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_4:+16332901 Msa1142240:CDS
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_4:-16332964 None:intergenic
CTTTGATAGGAAGGCCGCGA+GGG 0.569475 7_4:-16333834 None:intergenic
GTTGCGATCGGAATTGACCT+TGG 0.569919 7_4:+16332022 Msa1142240:CDS
ATGCTAAGAGGTTAATTGGA+AGG 0.571352 7_4:+16332641 Msa1142240:CDS
CAATCTCTCGCATCTGTGAG+AGG 0.572867 7_4:-16332807 None:intergenic
TATAACATCTAGGTCAATTG+TGG 0.576693 7_4:-16333283 None:intergenic
ACAGGAATAGAAGAGTTCCT+AGG 0.576763 7_4:-16333681 None:intergenic
AAATATGAGGGAGTTGCGAT+CGG 0.580136 7_4:+16332010 Msa1142240:CDS
ACACAAATGCATCTTCCTGT+TGG 0.581155 7_4:-16334182 None:intergenic
CAGGCTGCTTTGTTGAGTGA+AGG 0.581375 7_4:+16333570 Msa1142240:CDS
TATACCTTTGTCTCTAGGGA+CGG 0.584148 7_4:+16333626 Msa1142240:CDS
GTTGAGAACTGCTTGTGAGA+AGG 0.588118 7_4:+16333230 Msa1142240:CDS
TTTGTGAAAGCAACACAAGA+AGG 0.591303 7_4:-16332130 None:intergenic
AGCAGTTCTCAACCTCCTCA+AGG 0.592116 7_4:-16333220 None:intergenic
TCTTGTGAACTACAAGGGTG+AGG 0.592468 7_4:+16332747 Msa1142240:CDS
ACTGCTGGAGACACGCACCT+AGG 0.597914 7_4:+16333108 Msa1142240:CDS
GGCATGACTTACGCATGTGT+TGG 0.597986 7_4:+16332043 Msa1142240:CDS
TTCATTCACTTGAAGCACAA+TGG 0.598922 7_4:+16331982 Msa1142240:exon
GATAATCAACGAACCGACTG+CGG 0.599523 7_4:+16332951 Msa1142240:CDS
GACAATTCTTGTGAACTACA+AGG 0.599895 7_4:+16332741 Msa1142240:CDS
CTTCTAGGATTCCTAAAGTG+AGG 0.600875 7_4:+16333463 Msa1142240:CDS
TAGGTGCGTGTCTCCAGCAG+TGG 0.603195 7_4:-16333106 None:intergenic
TATCAAAGTCTTCACCGCCT+AGG 0.607358 7_4:-16333125 None:intergenic
TGAAGACTTTGATAACAGAA+TGG 0.610392 7_4:+16333134 Msa1142240:CDS
TTGCTTTCACAAATTCCCAA+AGG 0.615627 7_4:+16332140 Msa1142240:CDS
CATCAAAAGTTCCACCGCCA+AGG 0.617660 7_4:-16333041 None:intergenic
ACTTTGTGAAGGAGTTCAAG+AGG 0.618825 7_4:+16333163 Msa1142240:CDS
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_4:-16332677 None:intergenic
TTATCCGTCCCTAGAGACAA+AGG 0.628280 7_4:-16333630 None:intergenic
TAAGAGCATCAACCCTGATG+AGG 0.628505 7_4:+16333524 Msa1142240:CDS
GAAAGCAACACAAGAAGGAG+TGG 0.629512 7_4:-16332125 None:intergenic
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_4:+16332683 Msa1142240:CDS
CACATGCGTAAGTCATGCCA+AGG 0.633484 7_4:-16332039 None:intergenic
AATGGTGAATCACTTTGTGA+AGG 0.643840 7_4:+16333152 Msa1142240:CDS
GTTCAAGAGGAAGAACAAAG+AGG 0.645922 7_4:+16333176 Msa1142240:CDS
TCCTAGAAGAACCACCAACA+AGG 0.646014 7_4:-16333449 None:intergenic
CATATGCAACAGCCTCATCA+GGG 0.647026 7_4:-16333536 None:intergenic
TTTGATAGGAAGGCCGCGAG+GGG 0.648655 7_4:-16333833 None:intergenic
GATCTTCACTTTGTCTACAG+GGG 0.654915 7_4:-16334118 None:intergenic
AAAATTGCTCTTGCCCCTCG+CGG 0.659211 7_4:+16333820 Msa1142240:CDS
GTGGAAACCCAAAAGCCTTG+AGG 0.661265 7_4:+16333205 Msa1142240:CDS
TCAAAAGAGAGCTAATTGTG+TGG 0.661747 7_4:+16332993 Msa1142240:CDS
GCTATGAAGAAGATCAACAA+AGG 0.662134 7_4:+16334246 Msa1142240:CDS
GAAACCCAAAAGCCTTGAGG+AGG 0.662349 7_4:+16333208 Msa1142240:CDS
ACAATTCTTGTGAACTACAA+GGG 0.663306 7_4:+16332742 Msa1142240:CDS
AATCAACGAACCGACTGCGG+CGG 0.664314 7_4:+16332954 Msa1142240:CDS
TGCTTTGCTATAGATGCTGA+TGG 0.666257 7_4:+16333859 Msa1142240:CDS
GCTGGAGCAGAACGATCGTG+TGG 0.667820 7_4:+16332072 Msa1142240:CDS
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_4:+16332929 Msa1142240:CDS
GCTGGAGACACGCACCTAGG+CGG 0.697716 7_4:+16333111 Msa1142240:CDS
ACTTTGATAGGAAGGCCGCG+AGG 0.705790 7_4:-16333835 None:intergenic
ACAGATGCGAGAGATTGCAG+AGG 0.728184 7_4:+16332813 Msa1142240:CDS
TCTGCCGAAGAAGAAACCAG+TGG 0.753215 7_4:+16333895 Msa1142240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTACAATTAAAAATA+AGG + chr7_4:16333068-16333087 Msa1142240:CDS 10.0%
!! ACACAGAAATTAAAATATTT+AGG - chr7_4:16330177-16330196 None:intergenic 15.0%
!! ATTTCTGTGTATAAATTATT+AGG + chr7_4:16330187-16330206 Msa1142240:intron 15.0%
!!! CAATAACAATAATATTTCTA+TGG - chr7_4:16330381-16330400 None:intergenic 15.0%
!!! TTTTAAAGTTGATTTTGAAA+AGG + chr7_4:16330488-16330507 Msa1142240:intron 15.0%
!!! TTACTTTCTAAAAACATTTT+TGG + chr7_4:16332350-16332369 Msa1142240:intron 15.0%
!! ATTACAATAACTAATGAAAA+TGG + chr7_4:16333931-16333950 Msa1142240:CDS 15.0%
!!! ATTATTGTTATTGCAATCAT+TGG + chr7_4:16330388-16330407 Msa1142240:intron 20.0%
!! ACTTAAATCATTAGGAATAA+GGG - chr7_4:16330634-16330653 None:intergenic 20.0%
!! AACTTAAATCATTAGGAATA+AGG - chr7_4:16330635-16330654 None:intergenic 20.0%
!!! ATTCCTAATGATTTAAGTTT+TGG + chr7_4:16330636-16330655 Msa1142240:intron 20.0%
!! TAACCAAAACTTAAATCATT+AGG - chr7_4:16330642-16330661 None:intergenic 20.0%
!! TAGATTGTATCATATTATCT+TGG + chr7_4:16331386-16331405 Msa1142240:intron 20.0%
!! TATTGTGTATGAGTTTAATT+TGG + chr7_4:16331473-16331492 Msa1142240:intron 20.0%
!! AACAATTAACATACTAACAT+CGG - chr7_4:16331671-16331690 None:intergenic 20.0%
!!! ATATTATAGATCACCATTTT+AGG + chr7_4:16332321-16332340 Msa1142240:intron 20.0%
!!! TATTATAGATCACCATTTTA+GGG + chr7_4:16332322-16332341 Msa1142240:intron 20.0%
!!! TTCATTTTAAATTGCTAACA+TGG + chr7_4:16332375-16332394 Msa1142240:intron 20.0%
!!! TCATTTTAAATTGCTAACAT+GGG + chr7_4:16332376-16332395 Msa1142240:intron 20.0%
!!! ATTTTTGGAAGTTTTGAAAA+TGG - chr7_4:16332496-16332515 None:intergenic 20.0%
!! GTTGATATGAAAATGAAAAT+AGG + chr7_4:16332590-16332609 Msa1142240:intron 20.0%
!!! AATATTTTTATCTTTGACCT+TGG + chr7_4:16333024-16333043 Msa1142240:CDS 20.0%
! AAATTATTAGGAGAGTGATA+TGG + chr7_4:16330199-16330218 Msa1142240:intron 25.0%
! AAGTGATTTAACACTATTCT+CGG - chr7_4:16330273-16330292 None:intergenic 25.0%
!!! GACTAATCGATTTTTTCATT+TGG - chr7_4:16330716-16330735 None:intergenic 25.0%
! AGCATTATAACAACAAAGAT+TGG + chr7_4:16330807-16330826 Msa1142240:intron 25.0%
! ATAACAACAAAGATTGGATT+TGG + chr7_4:16330813-16330832 Msa1142240:intron 25.0%
!! TTGAATATTGTATTGGCATA+GGG - chr7_4:16330864-16330883 None:intergenic 25.0%
!! TTTGAATATTGTATTGGCAT+AGG - chr7_4:16330865-16330884 None:intergenic 25.0%
! AAAAATTGGGTGTAAAAACA+AGG + chr7_4:16330943-16330962 Msa1142240:intron 25.0%
! AGATTAAAGAATTGGAGATA+TGG + chr7_4:16330982-16331001 Msa1142240:intron 25.0%
! TTGGTTATCAAATTTCTCAA+TGG + chr7_4:16331076-16331095 Msa1142240:intron 25.0%
!! AATTTTATGTTCTTGGTAGA+AGG + chr7_4:16331247-16331266 Msa1142240:intron 25.0%
!!! GGGATTTTATTTATGTAAAC+TGG + chr7_4:16331423-16331442 Msa1142240:intron 25.0%
!!! ATGTTTGATGATCTAGTTTT+TGG + chr7_4:16331503-16331522 Msa1142240:intron 25.0%
!!! TGTATAGTAGTATTTTGGAA+AGG - chr7_4:16331903-16331922 None:intergenic 25.0%
!! TGTAGTGTATAGTAGTATTT+TGG - chr7_4:16331908-16331927 None:intergenic 25.0%
!! TTTGAATTGGCTTCAAAATT+TGG - chr7_4:16331945-16331964 None:intergenic 25.0%
! TTTGTAGAGAAGATTTGAAT+TGG - chr7_4:16331958-16331977 None:intergenic 25.0%
! ACAATGGCAAAAAAATATGA+GGG + chr7_4:16331998-16332017 Msa1142240:exon 25.0%
! GAAATTATTCACAATGATCA+AGG + chr7_4:16332094-16332113 Msa1142240:CDS 25.0%
! AACTAAAAATTAAACAGTGC+TGG - chr7_4:16332246-16332265 None:intergenic 25.0%
!! TGCAACATATTTGACATTTT+TGG - chr7_4:16332511-16332530 None:intergenic 25.0%
! TAGCATCTGCAAAAAATTAA+GGG - chr7_4:16332627-16332646 None:intergenic 25.0%
! TTAGCATCTGCAAAAAATTA+AGG - chr7_4:16332628-16332647 None:intergenic 25.0%
! TGTGAATCATTAAAATAAGC+AGG - chr7_4:16332880-16332899 None:intergenic 25.0%
!!! ATACATCAAGGTATTGATTT+TGG + chr7_4:16333303-16333322 Msa1142240:CDS 25.0%
!!! CTATTACAAGAGTTTTTCAA+GGG + chr7_4:16333489-16333508 Msa1142240:CDS 25.0%
!!! TATTACAAGAGTTTTTCAAG+GGG + chr7_4:16333490-16333509 Msa1142240:CDS 25.0%
! GGATAATTTAGGAGATATTA+TGG + chr7_4:16333647-16333666 Msa1142240:CDS 25.0%
!! TAACATAAGTTTTTGTCTTC+TGG - chr7_4:16333707-16333726 None:intergenic 25.0%
! AATATCATTCTTATTACCAC+TGG - chr7_4:16333914-16333933 None:intergenic 25.0%
! ATCAATTCTGCAATGATAAA+GGG + chr7_4:16334138-16334157 Msa1142240:CDS 25.0%
! AATGATAAAGGGAAAAAGTT+TGG + chr7_4:16334149-16334168 Msa1142240:CDS 25.0%
CACACTCAAGTAAAAAAACA+AGG + chr7_4:16330036-16330055 Msa1142240:five_prime_UTR 30.0%
!!! TCTTCTTCTTCTTTTTTCTC+TGG + chr7_4:16330072-16330091 Msa1142240:intron 30.0%
AGAACTCAAGTAACGTTAAA+AGG - chr7_4:16330123-16330142 None:intergenic 30.0%
GAGATTTCTTCCATCTTAAT+CGG + chr7_4:16330225-16330244 Msa1142240:intron 30.0%
AGTGATTTAACACTATTCTC+GGG - chr7_4:16330272-16330291 None:intergenic 30.0%
GAATAGTGTTAAATCACTTG+AGG + chr7_4:16330274-16330293 Msa1142240:intron 30.0%
!!! GAGTGTTTTAGCATCTATTA+CGG + chr7_4:16330296-16330315 Msa1142240:intron 30.0%
ACTAAGAATCGGAAAAATGT+TGG + chr7_4:16330591-16330610 Msa1142240:intron 30.0%
TCCAATTCTTTAATCTCGAA+TGG - chr7_4:16330978-16330997 None:intergenic 30.0%
TGGAGATATGGAAAAAATGT+TGG + chr7_4:16330994-16331013 Msa1142240:intron 30.0%
AGATATGGAAAAAATGTTGG+AGG + chr7_4:16330997-16331016 Msa1142240:intron 30.0%
TGAAAATCAGTTCTTGGAAT+TGG + chr7_4:16331023-16331042 Msa1142240:intron 30.0%
! GTATATCCATTAAGTTGCTT+AGG + chr7_4:16331102-16331121 Msa1142240:intron 30.0%
AAATGAGGCGTAAAGTAAAA+TGG + chr7_4:16331316-16331335 Msa1142240:intron 30.0%
TTTATGTAAACTGGTTAACC+TGG + chr7_4:16331432-16331451 Msa1142240:intron 30.0%
TTATGTAAACTGGTTAACCT+GGG + chr7_4:16331433-16331452 Msa1142240:intron 30.0%
CATATACCAAATTAATACCC+AGG - chr7_4:16331453-16331472 None:intergenic 30.0%
AATACTAGTCACATTGAAGA+AGG + chr7_4:16331709-16331728 Msa1142240:intron 30.0%
CACAATGGCAAAAAAATATG+AGG + chr7_4:16331997-16332016 Msa1142240:exon 30.0%
!! TACCAAATACAGTGTTGATT+GGG - chr7_4:16332204-16332223 None:intergenic 30.0%
!! TTACCAAATACAGTGTTGAT+TGG - chr7_4:16332205-16332224 None:intergenic 30.0%
AAAGTAAACATGCCCTAAAA+TGG - chr7_4:16332337-16332356 None:intergenic 30.0%
TGTGCTAGATAAAAGATAGA+AGG + chr7_4:16332423-16332442 Msa1142240:intron 30.0%
!!! AATTTTTTGCAGATGCTAAG+AGG + chr7_4:16332629-16332648 Msa1142240:intron 30.0%
TTGTAGTTCACAAGAATTGT+CGG - chr7_4:16332742-16332761 None:intergenic 30.0%
ACAATTCTTGTGAACTACAA+GGG + chr7_4:16332742-16332761 Msa1142240:CDS 30.0%
! ATTTTTATCTTTGACCTTGG+CGG + chr7_4:16333027-16333046 Msa1142240:CDS 30.0%
!! AAATAAGGTCTTTGAAGTCA+AGG + chr7_4:16333083-16333102 Msa1142240:CDS 30.0%
! TGAAGACTTTGATAACAGAA+TGG + chr7_4:16333134-16333153 Msa1142240:CDS 30.0%
AAGAACAAAGAGGATATTAG+TGG + chr7_4:16333186-16333205 Msa1142240:CDS 30.0%
TATAACATCTAGGTCAATTG+TGG - chr7_4:16333286-16333305 None:intergenic 30.0%
TACCTTGATGTATAACATCT+AGG - chr7_4:16333296-16333315 None:intergenic 30.0%
!!! ATTTTGGTTCATCAATCACT+CGG + chr7_4:16333319-16333338 Msa1142240:CDS 30.0%
CATATTCAATTGCTCAAACT+TGG - chr7_4:16333346-16333365 None:intergenic 30.0%
! GCTATTACAAGAGTTTTTCA+AGG + chr7_4:16333488-16333507 Msa1142240:CDS 30.0%
ATGTTATACCTTTGTCTCTA+GGG + chr7_4:16333622-16333641 Msa1142240:CDS 30.0%
ACAGTCTTGATTAATGTTTG+AGG + chr7_4:16333747-16333766 Msa1142240:intron 30.0%
CAGTCTTGATTAATGTTTGA+GGG + chr7_4:16333748-16333767 Msa1142240:intron 30.0%
ATAGCAAAGCATACTTTGAT+AGG - chr7_4:16333850-16333869 None:intergenic 30.0%
GATCAATTCTGCAATGATAA+AGG + chr7_4:16334137-16334156 Msa1142240:CDS 30.0%
CTTCTTGATTTCACCTTACA+CGG - chr7_4:16329980-16329999 None:intergenic 35.0%
ACAAGAATGTCCGATTAAGA+TGG - chr7_4:16330238-16330257 None:intergenic 35.0%
GTGATTTAACACTATTCTCG+GGG - chr7_4:16330271-16330290 None:intergenic 35.0%
! TATTACGGCTCTTTCTAGAA+CGG + chr7_4:16330311-16330330 Msa1142240:intron 35.0%
GGATTAAAGATTCATCAGAG+TGG + chr7_4:16330509-16330528 Msa1142240:intron 35.0%
AAAGATTCATCAGAGTGGAT+TGG + chr7_4:16330514-16330533 Msa1142240:intron 35.0%
! AAGATTCATCAGAGTGGATT+GGG + chr7_4:16330515-16330534 Msa1142240:intron 35.0%
!! AGTGTTGAATTCAAGTTGAG+TGG + chr7_4:16330554-16330573 Msa1142240:intron 35.0%
GTTCCACATCAACTAAGAAT+CGG + chr7_4:16330580-16330599 Msa1142240:intron 35.0%
! TTTCCGATTCTTAGTTGATG+TGG - chr7_4:16330586-16330605 None:intergenic 35.0%
!!! GCGGGTTTTGAATATTGTAT+TGG - chr7_4:16330871-16330890 None:intergenic 35.0%
TTTAACCAATGTACCTTCCT+AGG - chr7_4:16330893-16330912 None:intergenic 35.0%
! AGGAAGGTACATTGGTTAAA+TGG + chr7_4:16330893-16330912 Msa1142240:intron 35.0%
! GGAAGGTACATTGGTTAAAT+GGG + chr7_4:16330894-16330913 Msa1142240:intron 35.0%
! TACATTGGTTAAATGGGAGA+GGG + chr7_4:16330900-16330919 Msa1142240:intron 35.0%
TCGAGAGAGGGTAAAAAATT+GGG + chr7_4:16330930-16330949 Msa1142240:intron 35.0%
GCCATTCGAGATTAAAGAAT+TGG + chr7_4:16330974-16330993 Msa1142240:intron 35.0%
TATGGAAAAAATGTTGGAGG+AGG + chr7_4:16331000-16331019 Msa1142240:intron 35.0%
TGTGAAAGTCAAACTGTCAA+AGG + chr7_4:16331051-16331070 Msa1142240:intron 35.0%
! AGTCAAACTGTCAAAGGTTT+TGG + chr7_4:16331057-16331076 Msa1142240:intron 35.0%
! TCCATTAAGTTGCTTAGGAT+TGG + chr7_4:16331107-16331126 Msa1142240:intron 35.0%
ACCAATCCTAAGCAACTTAA+TGG - chr7_4:16331111-16331130 None:intergenic 35.0%
! ATTAAGTTGCTTAGGATTGG+TGG + chr7_4:16331110-16331129 Msa1142240:intron 35.0%
! TTAAGTTGCTTAGGATTGGT+GGG + chr7_4:16331111-16331130 Msa1142240:intron 35.0%
GAAAAGAAGTAAAACACTGC+AGG + chr7_4:16331205-16331224 Msa1142240:intron 35.0%
! GAGGGACAATTTTATGTTCT+TGG + chr7_4:16331240-16331259 Msa1142240:intron 35.0%
GGTTAACCTGGGTATTAATT+TGG + chr7_4:16331444-16331463 Msa1142240:intron 35.0%
ACTAGCTATCACATTGAAGA+AGG + chr7_4:16331758-16331777 Msa1142240:intron 35.0%
CATTGAAGAAGGAAAAGTCA+TGG + chr7_4:16331769-16331788 Msa1142240:intron 35.0%
TTCATTCACTTGAAGCACAA+TGG + chr7_4:16331982-16332001 Msa1142240:exon 35.0%
TTTGTGAAAGCAACACAAGA+AGG - chr7_4:16332133-16332152 None:intergenic 35.0%
TTGCTTTCACAAATTCCCAA+AGG + chr7_4:16332140-16332159 Msa1142240:CDS 35.0%
! GTTAGAAGAAGCCTGATTTT+TGG - chr7_4:16332182-16332201 None:intergenic 35.0%
AACCCAATCAACACTGTATT+TGG + chr7_4:16332199-16332218 Msa1142240:CDS 35.0%
ATGCTAAGAGGTTAATTGGA+AGG + chr7_4:16332641-16332660 Msa1142240:CDS 35.0%
CAGTAGATCATTCTGAACAA+TGG - chr7_4:16332680-16332699 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG + chr7_4:16332683-16332702 Msa1142240:CDS 35.0%
GACAATTCTTGTGAACTACA+AGG + chr7_4:16332741-16332760 Msa1142240:CDS 35.0%
GTAATCACTGCATTCTTAAC+AGG - chr7_4:16332853-16332872 None:intergenic 35.0%
AATATCACCTGCATCTTTAG+TGG - chr7_4:16332911-16332930 None:intergenic 35.0%
!! CACAATTAGCTCTCTTTTGA+AGG - chr7_4:16332993-16333012 None:intergenic 35.0%
TCAAAAGAGAGCTAATTGTG+TGG + chr7_4:16332993-16333012 Msa1142240:CDS 35.0%
AATGGTGAATCACTTTGTGA+AGG + chr7_4:16333152-16333171 Msa1142240:CDS 35.0%
GACCTAGATGTTATACATCA+AGG + chr7_4:16333291-16333310 Msa1142240:CDS 35.0%
!!! TTTTGGTTCATCAATCACTC+GGG + chr7_4:16333320-16333339 Msa1142240:CDS 35.0%
! GAACCTCTTTGAAAAGTGTA+TGG + chr7_4:16333365-16333384 Msa1142240:CDS 35.0%
! TGTCCATACACTTTTCAAAG+AGG - chr7_4:16333371-16333390 None:intergenic 35.0%
GATGTTATACCTTTGTCTCT+AGG + chr7_4:16333621-16333640 Msa1142240:CDS 35.0%
TTATGGATGTCGTTATTCCT+AGG + chr7_4:16333664-16333683 Msa1142240:CDS 35.0%
! TAAGTTTTTGTCTTCTGGAC+AGG - chr7_4:16333702-16333721 None:intergenic 35.0%
CAAAGCATACTTTGATAGGA+AGG - chr7_4:16333846-16333865 None:intergenic 35.0%
!! ATTACCACTGGTTTCTTCTT+CGG - chr7_4:16333902-16333921 None:intergenic 35.0%
!! CTTTGAAATTGTTAGCTTCC+TGG - chr7_4:16333990-16334009 None:intergenic 35.0%
GAAGTTCAAAAAGAAAGTCG+AGG + chr7_4:16334020-16334039 Msa1142240:CDS 35.0%
AGTCGAGGCAAGAAATAATT+TGG + chr7_4:16334035-16334054 Msa1142240:CDS 35.0%
AGTATTGTCTTTACAGTGTG+AGG + chr7_4:16334058-16334077 Msa1142240:CDS 35.0%
TGATCTTCACTTTGTCTACA+GGG - chr7_4:16334122-16334141 None:intergenic 35.0%
TTGATCTTCACTTTGTCTAC+AGG - chr7_4:16334123-16334142 None:intergenic 35.0%
! TGTGTTTGTGGACTTTTTGA+AGG + chr7_4:16334200-16334219 Msa1142240:CDS 35.0%
GCTATGAAGAAGATCAACAA+AGG + chr7_4:16334246-16334265 Msa1142240:CDS 35.0%
GTACTTGTGTTAAGTCTCCT+AGG + chr7_4:16330664-16330683 Msa1142240:intron 40.0%
! ATTGTATTGGCATAGGGTTG+TGG - chr7_4:16330858-16330877 None:intergenic 40.0%
ACAATATTCAAAACCCGCCT+AGG + chr7_4:16330873-16330892 Msa1142240:intron 40.0%
! GTACATTGGTTAAATGGGAG+AGG + chr7_4:16330899-16330918 Msa1142240:intron 40.0%
CTCGAGAGAGGGTAAAAAAT+TGG + chr7_4:16330929-16330948 Msa1142240:intron 40.0%
AGGAGGTGAAAATCAGTTCT+TGG + chr7_4:16331017-16331036 Msa1142240:intron 40.0%
TATGTTCTTGGTAGAAGGAC+TGG + chr7_4:16331252-16331271 Msa1142240:intron 40.0%
GAGAGTAGATGGATGAAATG+AGG + chr7_4:16331301-16331320 Msa1142240:intron 40.0%
ATCTTGGCGAGTCTTCTATT+TGG + chr7_4:16331402-16331421 Msa1142240:intron 40.0%
TCTTGGCGAGTCTTCTATTT+GGG + chr7_4:16331403-16331422 Msa1142240:intron 40.0%
CTTCAATGTGATAGCTAGTG+AGG - chr7_4:16331757-16331776 None:intergenic 40.0%
GAAAAGTCATGGCTTCTGAT+AGG + chr7_4:16331780-16331799 Msa1142240:intron 40.0%
AAATATGAGGGAGTTGCGAT+CGG + chr7_4:16332010-16332029 Msa1142240:CDS 40.0%
ACAAATTCCCAAAGGCTGAT+TGG + chr7_4:16332148-16332167 Msa1142240:CDS 40.0%
!! AGAAGAAGCCTGATTTTTGG+CGG - chr7_4:16332179-16332198 None:intergenic 40.0%
GCAGATGCTAAGAGGTTAAT+TGG + chr7_4:16332637-16332656 Msa1142240:intron 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG + chr7_4:16332822-16332841 Msa1142240:CDS 40.0%
AAAGATGCAGGTGATATTGC+TGG + chr7_4:16332913-16332932 Msa1142240:CDS 40.0%
! TTGCTGGTCTCAATGTAATG+CGG + chr7_4:16332929-16332948 Msa1142240:CDS 40.0%
ACTTTGTGAAGGAGTTCAAG+AGG + chr7_4:16333163-16333182 Msa1142240:CDS 40.0%
GTTCAAGAGGAAGAACAAAG+AGG + chr7_4:16333176-16333195 Msa1142240:CDS 40.0%
ATCTAGGTCAATTGTGGCTT+CGG - chr7_4:16333280-16333299 None:intergenic 40.0%
TTGTCTTGCTGATGCTAAGA+TGG + chr7_4:16333401-16333420 Msa1142240:CDS 40.0%
GTAGATGATGTTGTCCTTGT+TGG + chr7_4:16333435-16333454 Msa1142240:CDS 40.0%
!! CTTCTAGGATTCCTAAAGTG+AGG + chr7_4:16333463-16333482 Msa1142240:CDS 40.0%
TGTAATAGCTGCCTCACTTT+AGG - chr7_4:16333477-16333496 None:intergenic 40.0%
! ACATCTCGAAGTGTCAAGTT+TGG - chr7_4:16333606-16333625 None:intergenic 40.0%
! TATACCTTTGTCTCTAGGGA+CGG + chr7_4:16333626-16333645 Msa1142240:CDS 40.0%
! TCTCTAGGGACGGATAATTT+AGG + chr7_4:16333636-16333655 Msa1142240:CDS 40.0%
ACAGGAATAGAAGAGTTCCT+AGG - chr7_4:16333684-16333703 None:intergenic 40.0%
CATTAATCAAGACTGTGCGT+TGG - chr7_4:16333743-16333762 None:intergenic 40.0%
! TGCTTTGCTATAGATGCTGA+TGG + chr7_4:16333859-16333878 Msa1142240:CDS 40.0%
CAGTGTGAGGAAAGTAATGA+AGG + chr7_4:16334071-16334090 Msa1142240:CDS 40.0%
GATCTTCACTTTGTCTACAG+GGG - chr7_4:16334121-16334140 None:intergenic 40.0%
!! TTTGGTTGATGACAACCAAC+AGG + chr7_4:16334167-16334186 Msa1142240:CDS 40.0%
ACACAAATGCATCTTCCTGT+TGG - chr7_4:16334185-16334204 None:intergenic 40.0%
GGAAGATGCATTTGTGTTTG+TGG + chr7_4:16334188-16334207 Msa1142240:CDS 40.0%
TTGACAGTTCAGTCCGTGTA+AGG + chr7_4:16329964-16329983 Msa1142240:five_prime_UTR 45.0%
CATTGGAGAGTGAGAAGTCA+CGG + chr7_4:16330405-16330424 Msa1142240:intron 45.0%
TAAGTCTCCTAGGCACTCTT+TGG + chr7_4:16330674-16330693 Msa1142240:intron 45.0%
AAGTCTCCTAGGCACTCTTT+GGG + chr7_4:16330675-16330694 Msa1142240:intron 45.0%
! TAGGCACTCTTTGGGAGTTT+GGG + chr7_4:16330683-16330702 Msa1142240:intron 45.0%
! ACTCTTTGGGAGTTTGGGAA+GGG + chr7_4:16330688-16330707 Msa1142240:intron 45.0%
TATTGGCATAGGGTTGTGGA+GGG - chr7_4:16330854-16330873 None:intergenic 45.0%
TATTCAAAACCCGCCTAGGA+AGG + chr7_4:16330877-16330896 Msa1142240:intron 45.0%
AACCAATGTACCTTCCTAGG+CGG - chr7_4:16330890-16330909 None:intergenic 45.0%
! TAGGATTGGTGGGTCTGTTA+TGG + chr7_4:16331121-16331140 Msa1142240:intron 45.0%
AAACCAGATAGTTTCGCTGC+AGG + chr7_4:16331163-16331182 Msa1142240:intron 45.0%
! TAGTTTCGCTGCAGGACTTT+TGG + chr7_4:16331171-16331190 Msa1142240:intron 45.0%
TGCAGGCATAGAAGAAGTGA+GGG + chr7_4:16331222-16331241 Msa1142240:intron 45.0%
TTGGTAGAAGGACTGGAAGT+GGG + chr7_4:16331259-16331278 Msa1142240:intron 45.0%
TGGAAGTGGGGGATAGAAAT+GGG + chr7_4:16331272-16331291 Msa1142240:intron 45.0%
CTTACGCATGTGTTGGAGTA+TGG + chr7_4:16332050-16332069 Msa1142240:CDS 45.0%
GAAAGCAACACAAGAAGGAG+TGG - chr7_4:16332128-16332147 None:intergenic 45.0%
TCTACTGTTGTGGCCCTTTA+AGG + chr7_4:16332693-16332712 Msa1142240:CDS 45.0%
!! TGGCCCTTTAAGGTCATTTC+CGG + chr7_4:16332703-16332722 Msa1142240:CDS 45.0%
GCACCGGAAATGACCTTAAA+GGG - chr7_4:16332709-16332728 None:intergenic 45.0%
! AGCACCGGAAATGACCTTAA+AGG - chr7_4:16332710-16332729 None:intergenic 45.0%
TCTTGTGAACTACAAGGGTG+AGG + chr7_4:16332747-16332766 Msa1142240:CDS 45.0%
GATAATCAACGAACCGACTG+CGG + chr7_4:16332951-16332970 Msa1142240:CDS 45.0%
TTTATCTTTGACCTTGGCGG+TGG + chr7_4:16333030-16333049 Msa1142240:CDS 45.0%
TATCAAAGTCTTCACCGCCT+AGG - chr7_4:16333128-16333147 None:intergenic 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG - chr7_4:16333215-16333234 None:intergenic 45.0%
GTTGAGAACTGCTTGTGAGA+AGG + chr7_4:16333230-16333249 Msa1142240:CDS 45.0%
CTGCTTGTGAGAAGGCAAAA+AGG + chr7_4:16333238-16333257 Msa1142240:CDS 45.0%
GATGATGTTGTCCTTGTTGG+TGG + chr7_4:16333438-16333457 Msa1142240:CDS 45.0%
!! TCCTTGTTGGTGGTTCTTCT+AGG + chr7_4:16333448-16333467 Msa1142240:CDS 45.0%
TCCTAGAAGAACCACCAACA+AGG - chr7_4:16333452-16333471 None:intergenic 45.0%
!! TAAGAGCATCAACCCTGATG+AGG + chr7_4:16333524-16333543 Msa1142240:CDS 45.0%
CATATGCAACAGCCTCATCA+GGG - chr7_4:16333539-16333558 None:intergenic 45.0%
TTATCCGTCCCTAGAGACAA+AGG - chr7_4:16333633-16333652 None:intergenic 45.0%
ACCAAGCAAGTTGTTCTGAC+TGG - chr7_4:16333788-16333807 None:intergenic 45.0%
AGAGCTTGAGAGAATGATCC+AGG + chr7_4:16333969-16333988 Msa1142240:CDS 45.0%
!! TACGGCTCTTTCTAGAACGG+AGG + chr7_4:16330314-16330333 Msa1142240:intron 50.0%
!! CAAACTCCCAAAGAGTGCCT+AGG - chr7_4:16330684-16330703 None:intergenic 50.0%
! CTAGGCACTCTTTGGGAGTT+TGG + chr7_4:16330682-16330701 Msa1142240:intron 50.0%
! CACTCTTTGGGAGTTTGGGA+AGG + chr7_4:16330687-16330706 Msa1142240:intron 50.0%
! CTCTTTGGGAGTTTGGGAAG+GGG + chr7_4:16330689-16330708 Msa1142240:intron 50.0%
! GTATTGGCATAGGGTTGTGG+AGG - chr7_4:16330855-16330874 None:intergenic 50.0%
ACCAATGTACCTTCCTAGGC+GGG - chr7_4:16330889-16330908 None:intergenic 50.0%
! GATTGGTGGGTCTGTTATGG+TGG + chr7_4:16331124-16331143 Msa1142240:intron 50.0%
AGTCCTGCAGCGAAACTATC+TGG - chr7_4:16331169-16331188 None:intergenic 50.0%
CTGCAGGCATAGAAGAAGTG+AGG + chr7_4:16331221-16331240 Msa1142240:intron 50.0%
CTTGGTAGAAGGACTGGAAG+TGG + chr7_4:16331258-16331277 Msa1142240:intron 50.0%
TGGTAGAAGGACTGGAAGTG+GGG + chr7_4:16331260-16331279 Msa1142240:intron 50.0%
CTGGAAGTGGGGGATAGAAA+TGG + chr7_4:16331271-16331290 Msa1142240:intron 50.0%
AAGTGGGGGATAGAAATGGG+TGG + chr7_4:16331275-16331294 Msa1142240:intron 50.0%
ATGGGTGGAAGGAGAGTAGA+TGG + chr7_4:16331290-16331309 Msa1142240:intron 50.0%
GTTGCGATCGGAATTGACCT+TGG + chr7_4:16332022-16332041 Msa1142240:CDS 50.0%
CACATGCGTAAGTCATGCCA+AGG - chr7_4:16332042-16332061 None:intergenic 50.0%
GGCATGACTTACGCATGTGT+TGG + chr7_4:16332043-16332062 Msa1142240:CDS 50.0%
GGCATCACCAATCAGCCTTT+GGG - chr7_4:16332158-16332177 None:intergenic 50.0%
! TGGTGATGCCGCCAAAAATC+AGG + chr7_4:16332168-16332187 Msa1142240:CDS 50.0%
!! TGTCGGTTTGTCATCAGCAC+CGG - chr7_4:16332725-16332744 None:intergenic 50.0%
CAATCTCTCGCATCTGTGAG+AGG - chr7_4:16332810-16332829 None:intergenic 50.0%
ACAGATGCGAGAGATTGCAG+AGG + chr7_4:16332813-16332832 Msa1142240:CDS 50.0%
CGAAGAGCCACTAAAGATGC+AGG + chr7_4:16332901-16332920 Msa1142240:CDS 50.0%
CATCAAAAGTTCCACCGCCA+AGG - chr7_4:16333044-16333063 None:intergenic 50.0%
! TTTGAAGTCAAGGCCACTGC+TGG + chr7_4:16333093-16333112 Msa1142240:CDS 50.0%
GTGGAAACCCAAAAGCCTTG+AGG + chr7_4:16333205-16333224 Msa1142240:CDS 50.0%
GAAACCCAAAAGCCTTGAGG+AGG + chr7_4:16333208-16333227 Msa1142240:CDS 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG - chr7_4:16333216-16333235 None:intergenic 50.0%
AGCAGTTCTCAACCTCCTCA+AGG - chr7_4:16333223-16333242 None:intergenic 50.0%
CCATATGCAACAGCCTCATC+AGG - chr7_4:16333540-16333559 None:intergenic 50.0%
CCTGATGAGGCTGTTGCATA+TGG + chr7_4:16333537-16333556 Msa1142240:CDS 50.0%
! CAGGCTGCTTTGTTGAGTGA+AGG + chr7_4:16333570-16333589 Msa1142240:CDS 50.0%
! GCCAGTCAGAACAACTTGCT+TGG + chr7_4:16333784-16333803 Msa1142240:CDS 50.0%
AAAATTGCTCTTGCCCCTCG+CGG + chr7_4:16333820-16333839 Msa1142240:CDS 50.0%
TCTGCCGAAGAAGAAACCAG+TGG + chr7_4:16333895-16333914 Msa1142240:CDS 50.0%
TTTGTCTACAGGGGTGAGCT+TGG - chr7_4:16334112-16334131 None:intergenic 50.0%
! ACCCGCCTAGGAAGGTACAT+TGG + chr7_4:16330885-16330904 Msa1142240:intron 55.0%
GGTAGAAGGACTGGAAGTGG+GGG + chr7_4:16331261-16331280 Msa1142240:intron 55.0%
GGGGGATAGAAATGGGTGGA+AGG + chr7_4:16331279-16331298 Msa1142240:intron 55.0%
CGCATGTGTTGGAGTATGGC+TGG + chr7_4:16332054-16332073 Msa1142240:CDS 55.0%
CGGCATCACCAATCAGCCTT+TGG - chr7_4:16332159-16332178 None:intergenic 55.0%
AATCAACGAACCGACTGCGG+CGG + chr7_4:16332954-16332973 Msa1142240:CDS 55.0%
!! TGCATATGGTGCTGCTGTGC+AGG + chr7_4:16333551-16333570 Msa1142240:CDS 55.0%
TTTGATAGGAAGGCCGCGAG+GGG - chr7_4:16333836-16333855 None:intergenic 55.0%
CTTTGATAGGAAGGCCGCGA+GGG - chr7_4:16333837-16333856 None:intergenic 55.0%
ACTTTGATAGGAAGGCCGCG+AGG - chr7_4:16333838-16333857 None:intergenic 55.0%
! AGAGGGTGTGCTCTCGAGAG+AGG + chr7_4:16330917-16330936 Msa1142240:intron 60.0%
! GAGGGTGTGCTCTCGAGAGA+GGG + chr7_4:16330918-16330937 Msa1142240:intron 60.0%
GCTGGAGCAGAACGATCGTG+TGG + chr7_4:16332072-16332091 Msa1142240:CDS 60.0%
TATGCAAGAGCCGCCGCAGT+CGG - chr7_4:16332967-16332986 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG + chr7_4:16332967-16332986 Msa1142240:CDS 60.0%
TAGGTGCGTGTCTCCAGCAG+TGG - chr7_4:16333109-16333128 None:intergenic 60.0%
ACTGCTGGAGACACGCACCT+AGG + chr7_4:16333108-16333127 Msa1142240:CDS 60.0%
GCTGGAGACACGCACCTAGG+CGG + chr7_4:16333111-16333130 Msa1142240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 16329933 16334272 16329933 ID=Msa1142240;Name=Msa1142240
chr7_4 mRNA 16329933 16334272 16329933 ID=Msa1142240-mRNA-1;Parent=Msa1142240;Name=Msa1142240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=234|0.66|0.5|1|0.66|0.5|4|0|603
chr7_4 exon 16329933 16330057 16329933 ID=Msa1142240-mRNA-1:exon:3684;Parent=Msa1142240-mRNA-1
chr7_4 exon 16331892 16332220 16331892 ID=Msa1142240-mRNA-1:exon:3685;Parent=Msa1142240-mRNA-1
chr7_4 exon 16332641 16333728 16332641 ID=Msa1142240-mRNA-1:exon:3686;Parent=Msa1142240-mRNA-1
chr7_4 exon 16333769 16334272 16333769 ID=Msa1142240-mRNA-1:exon:3687;Parent=Msa1142240-mRNA-1
chr7_4 five_prime_UTR 16329933 16330057 16329933 ID=Msa1142240-mRNA-1:five_prime_utr;Parent=Msa1142240-mRNA-1
chr7_4 five_prime_UTR 16331892 16332000 16331892 ID=Msa1142240-mRNA-1:five_prime_utr;Parent=Msa1142240-mRNA-1
chr7_4 CDS 16332001 16332220 16332001 ID=Msa1142240-mRNA-1:cds;Parent=Msa1142240-mRNA-1
chr7_4 CDS 16332641 16333728 16332641 ID=Msa1142240-mRNA-1:cds;Parent=Msa1142240-mRNA-1
chr7_4 CDS 16333769 16334272 16333769 ID=Msa1142240-mRNA-1:cds;Parent=Msa1142240-mRNA-1
Gene Sequence

>Msa1142240

ATGGCAAAAAAATATGAGGGAGTTGCGATCGGAATTGACCTTGGCATGACTTACGCATGTGTTGGAGTATGGCTGGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACCACTCCTTCTTGTGTTGCTTTCACAAATTCCCAAAGGCTGATTGGTGATGCCGCCAAAAATCAGGCTTCTTCTAACCCAATCAACACTGTATTTGATGCTAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATTTCCGGTGCTGATGACAAACCGACAATTCTTGTGAACTACAAGGGTGAGGAAAAGCACTTTGTTGCTGAAGAAATATCATCTGTGATCCTCTCACAGATGCGAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGCAGTGATTACTGTACCTGCTTATTTTAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATCAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAATTGTGTGGATAAGAGAAATATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATTAAAAATAAGGTCTTTGAAGTCAAGGCCACTGCTGGAGACACGCACCTAGGCGGTGAAGACTTTGATAACAGAATGGTGAATCACTTTGTGAAGGAGTTCAAGAGGAAGAACAAAGAGGATATTAGTGGAAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAAGGCAAAAAGGACACTTTCATATAACACCGAAGCCACAATTGACCTAGATGTTATACATCAAGGTATTGATTTTGGTTCATCAATCACTCGGGCCAAGTTTGAGCAATTGAATATGAACCTCTTTGAAAAGTGTATGGACATTGTTAATAGTTGTCTTGCTGATGCTAAGATGGACAAGAATAGTGTAGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCTAAAGTGAGGCAGCTATTACAAGAGTTTTTCAAGGGGAAAGAATTATGTAAGAGCATCAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGAAGGTACGACTGTTCCAAACTTGACACTTCGAGATGTTATACCTTTGTCTCTAGGGACGGATAATTTAGGAGATATTATGGATGTCGTTATTCCTAGGAACTCTTCTATTCCTGTCCAGAAGACAAAAACTTATGTTACTGGTGAGAGAATAGTAGCCAGTCAGAACAACTTGCTTGGTTTATTTGAACTCAAAATTGCTCTTGCCCCTCGCGGCCTTCCTATCAAAGTATGCTTTGCTATAGATGCTGATGGTATATTAAATGTATCTGCCGAAGAAGAAACCAGTGGTAATAAGAATGATATTACAATAACTAATGAAAATGGCAGACTATCAAAAGAAGAGCTTGAGAGAATGATCCAGGAAGCTAACAATTTCAAAGCTCAAGATATGAAGTTCAAAAAGAAAGTCGAGGCAAGAAATAATTTGGAGTATTGTCTTTACAGTGTGAGGAAAGTAATGAAGGATGACTGTGTTAGTTCCAAGCTCACCCCTGTAGACAAAGTGAAGATCAATTCTGCAATGATAAAGGGAAAAAGTTTGGTTGATGACAACCAACAGGAAGATGCATTTGTGTTTGTGGACTTTTTGAAGGAGCTTGAGAGCATCTTTGAATCTGCTATGAAGAAGATCAACAAAGGTTAA
Protein sequence

>Msa1142240

MAKKYEGVAIGIDLGMTYACVGVWLEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPINTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGADDKPTILVNYKGEEKHFVAEEISSVILSQMREIAEAFLESPVKNAVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTIKNKVFEVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACEKAKRTLSYNTEATIDLDVIHQGIDFGSSITRAKFEQLNMNLFEKCMDIVNSCLADAKMDKNSVDDVVLVGGSSRIPKVRQLLQEFFKGKELCKSINPDEAVAYGAAVQAALLSEGTTVPNLTLRDVIPLSLGTDNLGDIMDVVIPRNSSIPVQKTKTYVTGERIVASQNNLLGLFELKIALAPRGLPIKVCFAIDADGILNVSAEEETSGNKNDITITNENGRLSKEELERMIQEANNFKAQDMKFKKKVEARNNLEYCLYSVRKVMKDDCVSSKLTPVDKVKINSAMIKGKSLVDDNQQEDAFVFVDFLKELESIFESAMKKINKG*