AlfalfaGEDB | Msa0902470

M. sativa cultivar zhongmu-4 / Msa0902470

KEGG: K00559
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005911 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008202 GO:0008610 GO:0008757 GO:0009058 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016125 GO:0016126 GO:0016740 GO:0016741 GO:0022414 GO:0030054 GO:0032259 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617
PFAM: PF02353.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902470	XP_003599380.1	98.611	144	2	0	58	201	1	144	3.62e-98	298

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902470	sp\|Q9LM02\|SMT1_ARATH	83.333	144	24	0	58	201	1	144	1.70e-86	261

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0401150	Msa0902470	0.874674	5.615426e-68	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902470	MtrunA17_Chr3g0089671	98.611	144	2	0	58	201	1	144	3.33e-102	298
Msa0902470	MtrunA17_Chr3g0143441	40.000	145	82	2	56	200	33	172	1.80e-30	114

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0902470	AT5G13710.1	83.333	144	24	0	58	201	1	144	1.73e-87	261
Msa0902470	AT5G13710.2	83.333	144	24	0	58	201	1	144	1.73e-87	261
Msa0902470	AT1G76090.1	41.135	141	80	2	61	200	34	172	6.01e-31	116
Msa0902470	AT1G20330.1	39.726	146	81	3	56	200	33	172	6.96e-31	115

Showing 1 to 4 of 4 entries

Previous1Next

Find 38 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAAACCTTCTGTC+CGG	0.459180	6_1:-100802540	None:intergenic
AACGAGTACCAGATCACCAG+GGG	0.706914	6_1:+100803189	Msa0902470:CDS
AAGATGAAAACCTTCTGTCC+GGG	0.556269	6_1:-100802539	None:intergenic
AAGGAAAGAGGACAAAGATA+TGG	0.396648	6_1:-100799468	None:intergenic
AAGTATCATGCATCCTATGG+AGG	0.651186	6_1:+100801585	Msa0902470:CDS
AATCGAGAAATTTCTCTTAA+TGG	0.184007	6_1:-100802688	None:intergenic
ACTCAATCGCAAAACTGGAG+TGG	0.680106	6_1:+100803549	Msa0902470:CDS
AGTGACGCACTTATCGACGG+CGG	0.770311	6_1:-100799749	None:intergenic
ATAACGAGTACCAGATCACC+AGG	0.590364	6_1:+100803187	Msa0902470:CDS
ATACCTTTCCCCTGGTGATC+TGG	0.394747	6_1:-100803197	None:intergenic

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGAATCAAATGTGATAAAGA+TGG	-	chr6_1:100799570-100799589	None:intergenic	30.0%
ACTGAAAAACATTGAATCCT+TGG	+	chr6_1:100800228-100800247	Msa0902470:intron	30.0%
AAAAAGAAGCAATAATCCTG+TGG	+	chr6_1:100800376-100800395	Msa0902470:intron	30.0%
TCATGTAGATTGCACAAAAT+TGG	+	chr6_1:100800426-100800445	Msa0902470:intron	30.0%
CATGTAGATTGCACAAAATT+GGG	+	chr6_1:100800427-100800446	Msa0902470:intron	30.0%
TTGTACAAAATGTGTCATGT+TGG	+	chr6_1:100800498-100800517	Msa0902470:intron	30.0%
ACTGTCAACAATATGATGTT+AGG	-	chr6_1:100800597-100800616	None:intergenic	30.0%
AACTTTACATAACCAAAACG+TGG	-	chr6_1:100800718-100800737	None:intergenic	30.0%
TACAACTGACAACAATATGT+TGG	-	chr6_1:100800927-100800946	None:intergenic	30.0%
TATCATCTCAAACAATGTCT+AGG	-	chr6_1:100800958-100800977	None:intergenic	30.0%

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	100799434	100803576	100799434	ID=Msa0902470;Name=Msa0902470
chr6_1	mRNA	100799434	100803576	100799434	ID=Msa0902470-mRNA-1;Parent=Msa0902470;Name=Msa0902470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|1\|0.87\|1\|0.71\|0.62\|8\|0\|201
chr6_1	exon	100799434	100799557	100799434	ID=Msa0902470-mRNA-1:exon:17846;Parent=Msa0902470-mRNA-1
chr6_1	exon	100799650	100799761	100799650	ID=Msa0902470-mRNA-1:exon:17847;Parent=Msa0902470-mRNA-1
chr6_1	exon	100801578	100801644	100801578	ID=Msa0902470-mRNA-1:exon:17848;Parent=Msa0902470-mRNA-1
chr6_1	exon	100802308	100802381	100802308	ID=Msa0902470-mRNA-1:exon:17849;Parent=Msa0902470-mRNA-1
chr6_1	exon	100802466	100802550	100802466	ID=Msa0902470-mRNA-1:exon:17850;Parent=Msa0902470-mRNA-1
chr6_1	exon	100802658	100802713	100802658	ID=Msa0902470-mRNA-1:exon:17851;Parent=Msa0902470-mRNA-1
chr6_1	exon	100803161	100803215	100803161	ID=Msa0902470-mRNA-1:exon:17852;Parent=Msa0902470-mRNA-1
chr6_1	exon	100803547	100803576	100803547	ID=Msa0902470-mRNA-1:exon:17853;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100799434	100799557	100799434	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100799650	100799761	100799650	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100801578	100801644	100801578	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100802308	100802381	100802308	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100802466	100802550	100802466	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100802658	100802713	100802658	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100803161	100803215	100803161	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1	CDS	100803547	100803576	100803547	ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1

Gene Sequence

>Msa0902470

ATGACACAAAATACATCGTCACATGACACTCACTCCATATCTTTGTCCTCTTTCCTTTTTCTTTCTTTTAAAACGCCTCTAAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATCCACATCGAAACGAGGTCGTTTTTGAGTTCTGCTTTAAACCTTTTCAAGCAATGGATTTGGCTTCGAATCTCGGTGGAAAGATTGAAAAAGCTGAAGTTCTCTCCGCCGTCGATAAGTATGAGAAGTATCATGCATCCTATGGAGGTCAAGAGGATGAAAGGAAAGCTAATTATAGTGATATGGTTAATAAATACTATGATCTTGCGACAAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCAACAAGATGGGTAGGGGAATCTCTTAGAGAGAGCATCAAGCGACATGAACACTTCCTTGCTTTACAACTTGGTCTTAAGCCCGGACAGAAGGTTTTGGATGTTGGTTGTGGTATTGGGGGACCATTAAGAGAAATTTCTCGATTCAGCTCGACATCTGTTACAGGATTGAATAATAACGAGTACCAGATCACCAGGGGAAAGGCACTCAATCGCAAAACTGGAGTGGACAAG

Protein sequence

>Msa0902470

MTQNTSSHDTHSISLSSFLFLSFKTPLNLSLSLSLSLSLHPHRNEVVFEFCFKPFQAMDLASNLGGKIEKAEVLSAVDKYEKYHASYGGQEDERKANYSDMVNKYYDLATSFYEFGWGESFHFATRWVGESLRESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREISRFSSTSVTGLNNNEYQITRGKALNRKTGVDK