AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902470 MtrunA17_Chr3g0089671 98.611 144 2 0 58 201 1 144 3.33e-102 298
Msa0902470 MtrunA17_Chr3g0143441 40.000 145 82 2 56 200 33 172 1.80e-30 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902470 AT5G13710.1 83.333 144 24 0 58 201 1 144 1.73e-87 261
Msa0902470 AT5G13710.2 83.333 144 24 0 58 201 1 144 1.73e-87 261
Msa0902470 AT1G76090.1 41.135 141 80 2 61 200 34 172 6.01e-31 116
Msa0902470 AT1G20330.1 39.726 146 81 3 56 200 33 172 6.96e-31 115

Find 38 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATGTTGGTTGTGGTATT+GGG 0.139062 6_1:+100802662 Msa0902470:CDS
AATCGAGAAATTTCTCTTAA+TGG 0.184007 6_1:-100802688 None:intergenic
TTGGATGTTGGTTGTGGTAT+TGG 0.186951 6_1:+100802661 Msa0902470:CDS
TAAGAGAAATTTCTCGATTC+AGG 0.202299 6_1:+100802692 Msa0902470:CDS
TGCAGCTCGACATCTGTTAC+AGG 0.301259 6_1:+100803156 Msa0902470:intron
ATGGACACCTTGTTGCAAAA+TGG 0.313547 6_1:-100802367 None:intergenic
CAGGCACTCAATCGCAAAAC+TGG 0.331030 6_1:+100803544 Msa0902470:intron
GAAAGCTAATTATAGTGATA+TGG 0.357093 6_1:+100801623 Msa0902470:CDS
CACTTCCTTGCTTTACAACT+TGG 0.357247 6_1:+100802509 Msa0902470:CDS
GGATGTTGGTTGTGGTATTG+GGG 0.388964 6_1:+100802663 Msa0902470:CDS
ATACCTTTCCCCTGGTGATC+TGG 0.394747 6_1:-100803197 None:intergenic
AAGGAAAGAGGACAAAGATA+TGG 0.396648 6_1:-100799468 None:intergenic
GCCAAATCCATTGCTTGAAA+AGG 0.428187 6_1:-100799685 None:intergenic
ATGGATTTGGCTTCGAATCT+CGG 0.452661 6_1:+100799697 Msa0902470:CDS
AAAGATGAAAACCTTCTGTC+CGG 0.459180 6_1:-100802540 None:intergenic
TCTTCTGATGCAGATGGGTA+GGG 0.474313 6_1:+100802453 Msa0902470:intron
GAGAAGTATCATGCATCCTA+TGG 0.508363 6_1:+100801582 Msa0902470:CDS
CTTCTGATGCAGATGGGTAG+GGG 0.513432 6_1:+100802454 Msa0902470:intron
TTCTTCTGATGCAGATGGGT+AGG 0.532055 6_1:+100802452 Msa0902470:intron
TTCATCCTCTTGACCTCCAT+AGG 0.544369 6_1:-100801598 None:intergenic
TGGTCTTAAGCCCGGACAGA+AGG 0.551005 6_1:+100802529 Msa0902470:CDS
TTACAACTTGGTCTTAAGCC+CGG 0.554828 6_1:+100802521 Msa0902470:CDS
AAGATGAAAACCTTCTGTCC+GGG 0.556269 6_1:-100802539 None:intergenic
ATGGAGGTCAAGAGGATGAA+AGG 0.562038 6_1:+100801601 Msa0902470:CDS
ATAACGAGTACCAGATCACC+AGG 0.590364 6_1:+100803187 Msa0902470:CDS
GATGTTGGTTGTGGTATTGG+GGG 0.596492 6_1:+100802664 Msa0902470:CDS
TAAGACCAAGTTGTAAAGCA+AGG 0.600321 6_1:-100802514 None:intergenic
GTACCAGATCACCAGGGGAA+AGG 0.607731 6_1:+100803194 Msa0902470:CDS
TGCATCCTATGGAGGTCAAG+AGG 0.610680 6_1:+100801593 Msa0902470:CDS
CAAAACACATACCTTTCCCC+TGG 0.613010 6_1:-100803205 None:intergenic
AAGTATCATGCATCCTATGG+AGG 0.651186 6_1:+100801585 Msa0902470:CDS
GAGAGTGACGCACTTATCGA+CGG 0.652498 6_1:-100799752 None:intergenic
ACTCAATCGCAAAACTGGAG+TGG 0.680106 6_1:+100803549 Msa0902470:CDS
GATTTGGCTTCGAATCTCGG+TGG 0.689368 6_1:+100799700 Msa0902470:CDS
AACGAGTACCAGATCACCAG+GGG 0.706914 6_1:+100803189 Msa0902470:CDS
TAACGAGTACCAGATCACCA+GGG 0.744545 6_1:+100803188 Msa0902470:CDS
GTGTAATTTAGATCGAAACG+AGG 0.758490 6_1:+100799639 Msa0902470:intron
AGTGACGCACTTATCGACGG+CGG 0.770311 6_1:-100799749 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTGATTTTGA+AGG + chr6_1:100799921-100799940 Msa0902470:intron 10.0%
!! ATAAAAAAAAAAAATAACAC+AGG - chr6_1:100799966-100799985 None:intergenic 10.0%
!! TTGAATAATAATGCATTTAT+TGG - chr6_1:100800524-100800543 None:intergenic 15.0%
!! AGTATATTCTAAATTTGATT+TGG - chr6_1:100801910-100801929 None:intergenic 15.0%
!! TTTCAATGATTAATGAATAT+TGG + chr6_1:100802147-100802166 Msa0902470:intron 15.0%
!!! ATTTGTAAATTTTGTATAGT+TGG + chr6_1:100802204-100802223 Msa0902470:intron 15.0%
!!! TTTGTAAATTTTGTATAGTT+GGG + chr6_1:100802205-100802224 Msa0902470:intron 15.0%
!! TCTAATTTAAACTTAAGATA+TGG - chr6_1:100802235-100802254 None:intergenic 15.0%
!! TCTTAAGTTTAAATTAGATT+CGG + chr6_1:100802237-100802256 Msa0902470:intron 15.0%
!!! CTTTTTCTTTATTTGTTTTT+AGG + chr6_1:100802636-100802655 Msa0902470:intron 15.0%
!! GATGAAAAAAAAAGTGAAAT+GGG - chr6_1:100799602-100799621 None:intergenic 20.0%
!! AGATGAAAAAAAAAGTGAAA+TGG - chr6_1:100799603-100799622 None:intergenic 20.0%
!!! ATGTTTTAGATTTTGTAGTA+AGG + chr6_1:100800749-100800768 Msa0902470:intron 20.0%
!!! TAATGAGTTGAATCAAAATA+TGG + chr6_1:100800851-100800870 Msa0902470:intron 20.0%
!! AAAAGAAATTTATCCAAACA+GGG - chr6_1:100801075-100801094 None:intergenic 20.0%
!! AAAAAGAAATTTATCCAAAC+AGG - chr6_1:100801076-100801095 None:intergenic 20.0%
!! TAAGCATTTATCATGATAAA+CGG - chr6_1:100801117-100801136 None:intergenic 20.0%
!!! ACTATTTTCATAAGATATCT+TGG + chr6_1:100801208-100801227 Msa0902470:intron 20.0%
!!! AATGATCAATACATTTTATC+AGG - chr6_1:100801548-100801567 None:intergenic 20.0%
!!! GATAAAATGTATTGATCATT+TGG + chr6_1:100801548-100801567 Msa0902470:intron 20.0%
!!! GCTAATTATCAGTAATATTT+TGG - chr6_1:100801672-100801691 None:intergenic 20.0%
!! AGTGAACATAAATATCATAA+AGG - chr6_1:100802052-100802071 None:intergenic 20.0%
!!! TTAGATCTTCATATATTTTC+AGG + chr6_1:100802286-100802305 Msa0902470:intron 20.0%
!! ATGTGCAAAAATGAATAAAA+TGG - chr6_1:100802389-100802408 None:intergenic 20.0%
!!! CTTTATTTGTTTTTAGGTTT+TGG + chr6_1:100802642-100802661 Msa0902470:intron 20.0%
!! ACAAAAATATTGTCAAATAG+CGG + chr6_1:100802836-100802855 Msa0902470:intron 20.0%
!! TTGCTTACAAAAATCATTAA+GGG + chr6_1:100803126-100803145 Msa0902470:intron 20.0%
!! TTTAAAAACTAGATATGAGA+AGG - chr6_1:100803261-100803280 None:intergenic 20.0%
!!! TCTAGTTTTTAAAGCTTTAT+AGG + chr6_1:100803268-100803287 Msa0902470:intron 20.0%
!! GTGTATAAAATTTATACCAA+AGG - chr6_1:100803386-100803405 None:intergenic 20.0%
!!! TAATAGTCTTTTCATCAATA+AGG - chr6_1:100803433-100803452 None:intergenic 20.0%
! AAAAGAAAGAAAAAGGAAAG+AGG - chr6_1:100799483-100799502 None:intergenic 25.0%
!!! GCGTTTTAAAAGAAAGAAAA+AGG - chr6_1:100799490-100799509 None:intergenic 25.0%
!! AAAAGTGTAAATTCACAATG+TGG - chr6_1:100799793-100799812 None:intergenic 25.0%
! CACAAAATTGGGTAATTAAT+AGG + chr6_1:100800438-100800457 Msa0902470:intron 25.0%
! AAATATGGTGTGTATTGAAT+TGG + chr6_1:100800866-100800885 Msa0902470:intron 25.0%
! TACAATGTGAAGTCAAAATA+TGG - chr6_1:100801044-100801063 None:intergenic 25.0%
! AAATTTAAAAGACACTGTTC+AGG - chr6_1:100801456-100801475 None:intergenic 25.0%
! GAAAGCTAATTATAGTGATA+TGG + chr6_1:100801623-100801642 Msa0902470:CDS 25.0%
!!! ATGTTCACTCTTTTTCAATA+TGG + chr6_1:100802063-100802082 Msa0902470:intron 25.0%
!!! TGTTCACTCTTTTTCAATAT+GGG + chr6_1:100802064-100802083 Msa0902470:intron 25.0%
! AATCGAGAAATTTCTCTTAA+TGG - chr6_1:100802691-100802710 None:intergenic 25.0%
! TTGTAATAAATAGCATATCG+CGG - chr6_1:100802820-100802839 None:intergenic 25.0%
! AACTAAAGGTAAAACAAACA+AGG - chr6_1:100803108-100803127 None:intergenic 25.0%
!! TGATTTTTGTAAGCAACTAA+AGG - chr6_1:100803122-100803141 None:intergenic 25.0%
! GTTGCTTACAAAAATCATTA+AGG + chr6_1:100803125-100803144 Msa0902470:intron 25.0%
! TGCTTACAAAAATCATTAAG+GGG + chr6_1:100803127-100803146 Msa0902470:intron 25.0%
! CTAAAATACTTTGATCTAAC+TGG + chr6_1:100803503-100803522 Msa0902470:intron 25.0%
GGAATCAAATGTGATAAAGA+TGG - chr6_1:100799570-100799589 None:intergenic 30.0%
!! CTTTAAACCTTTTCAAGCAA+TGG + chr6_1:100799678-100799697 Msa0902470:CDS 30.0%
!! CTACTAGTATTACTTTTCTG+TGG + chr6_1:100800200-100800219 Msa0902470:intron 30.0%
ACTGAAAAACATTGAATCCT+TGG + chr6_1:100800228-100800247 Msa0902470:intron 30.0%
!! TAGTGTATAGCTTTGAACTT+TGG + chr6_1:100800272-100800291 Msa0902470:intron 30.0%
!! AGTGTATAGCTTTGAACTTT+GGG + chr6_1:100800273-100800292 Msa0902470:intron 30.0%
AAAAAGAAGCAATAATCCTG+TGG + chr6_1:100800376-100800395 Msa0902470:intron 30.0%
TCATGTAGATTGCACAAAAT+TGG + chr6_1:100800426-100800445 Msa0902470:intron 30.0%
CATGTAGATTGCACAAAATT+GGG + chr6_1:100800427-100800446 Msa0902470:intron 30.0%
TTGTACAAAATGTGTCATGT+TGG + chr6_1:100800498-100800517 Msa0902470:intron 30.0%
ACTGTCAACAATATGATGTT+AGG - chr6_1:100800597-100800616 None:intergenic 30.0%
AACTTTACATAACCAAAACG+TGG - chr6_1:100800718-100800737 None:intergenic 30.0%
TACAACTGACAACAATATGT+TGG - chr6_1:100800927-100800946 None:intergenic 30.0%
TATCATCTCAAACAATGTCT+AGG - chr6_1:100800958-100800977 None:intergenic 30.0%
GTTACACATTTATGTTGTTG+TGG + chr6_1:100800986-100801005 Msa0902470:intron 30.0%
TTGACTTCACATTGTAAACT+TGG + chr6_1:100801048-100801067 Msa0902470:intron 30.0%
TGACTTCACATTGTAAACTT+GGG + chr6_1:100801049-100801068 Msa0902470:intron 30.0%
! TTTTGTCAGATTCTCTTCAT+AGG - chr6_1:100801238-100801257 None:intergenic 30.0%
AGAATCTGACAAAAAGCTTA+TGG + chr6_1:100801244-100801263 Msa0902470:intron 30.0%
GAATCTGACAAAAAGCTTAT+GGG + chr6_1:100801245-100801264 Msa0902470:intron 30.0%
!! ATGTCATAAGCTGTTTTCAT+AGG + chr6_1:100801270-100801289 Msa0902470:intron 30.0%
TGAACAACGTTACAAAACAA+GGG - chr6_1:100801357-100801376 None:intergenic 30.0%
ATGAACAACGTTACAAAACA+AGG - chr6_1:100801358-100801377 None:intergenic 30.0%
!!! GTATTGATCATTTGGTTTTC+AGG + chr6_1:100801556-100801575 Msa0902470:intron 30.0%
AGCACTGTTATCACTATAAT+TGG - chr6_1:100801694-100801713 None:intergenic 30.0%
! AACCTTTTCAGATTTGGATT+TGG + chr6_1:100801802-100801821 Msa0902470:intron 30.0%
TTCCAATCTTCATCTAACAA+TGG + chr6_1:100801945-100801964 Msa0902470:intron 30.0%
GAAGCAATTTCCAATTGATA+TGG + chr6_1:100802086-100802105 Msa0902470:intron 30.0%
AATTTCCAATTGATATGGCA+TGG + chr6_1:100802091-100802110 Msa0902470:intron 30.0%
ACAAATACCACATCAGAAAA+AGG - chr6_1:100802190-100802209 None:intergenic 30.0%
! TCTAATGATGTTCCTTTTTC+AGG - chr6_1:100802271-100802290 None:intergenic 30.0%
! AATCTTTCCATTTTGCAACA+AGG + chr6_1:100802360-100802379 Msa0902470:CDS 30.0%
! TAATTTTCTTCTGATGCAGA+TGG + chr6_1:100802447-100802466 Msa0902470:intron 30.0%
! AATTTTCTTCTGATGCAGAT+GGG + chr6_1:100802448-100802467 Msa0902470:intron 30.0%
!!! TGTTTTTAGGTTTTGGATGT+TGG + chr6_1:100802649-100802668 Msa0902470:intron 30.0%
TAAGAGAAATTTCTCGATTC+AGG + chr6_1:100802692-100802711 Msa0902470:CDS 30.0%
!!! TTTTAAAGCTTTATAGGTGC+TGG + chr6_1:100803274-100803293 Msa0902470:intron 30.0%
TCATGGTTGTGTGATAAAAA+TGG - chr6_1:100803322-100803341 None:intergenic 30.0%
GTACTTATATGACAATCCTT+TGG + chr6_1:100803367-100803386 Msa0902470:intron 30.0%
!! TAGTCCCTCTAGAATAAATT+TGG + chr6_1:100803407-100803426 Msa0902470:intron 30.0%
AAGGCCAAATTTATTCTAGA+GGG - chr6_1:100803414-100803433 None:intergenic 30.0%
TAAGGCCAAATTTATTCTAG+AGG - chr6_1:100803415-100803434 None:intergenic 30.0%
!!! GCCAGTTTTTTATGTTTAAC+AGG + chr6_1:100803525-100803544 Msa0902470:intron 30.0%
GCCTGTTAAACATAAAAAAC+TGG - chr6_1:100803529-100803548 None:intergenic 30.0%
AAGGAAAGAGGACAAAGATA+TGG - chr6_1:100799471-100799490 None:intergenic 35.0%
AAGTGAAATGGGAGAGAAAA+TGG - chr6_1:100799591-100799610 None:intergenic 35.0%
GTGTAATTTAGATCGAAACG+AGG + chr6_1:100799639-100799658 Msa0902470:intron 35.0%
!! ACCTTTTCAAGCAATGGATT+TGG + chr6_1:100799684-100799703 Msa0902470:CDS 35.0%
TCAAGAATCTCTATGATGCT+GGG + chr6_1:100800095-100800114 Msa0902470:intron 35.0%
TCTTACTTAGACTAGATCCA+AGG - chr6_1:100800248-100800267 None:intergenic 35.0%
!! GTGTATAGCTTTGAACTTTG+GGG + chr6_1:100800274-100800293 Msa0902470:intron 35.0%
!!! CTTTTTTTATCCAACACCAC+AGG - chr6_1:100800395-100800414 None:intergenic 35.0%
CAACAATATGATGTTAGGTG+CGG - chr6_1:100800592-100800611 None:intergenic 35.0%
TATCATCTCTAGCAAAGTCT+AGG - chr6_1:100800632-100800651 None:intergenic 35.0%
!! ACCGTTTGATTTTGATCAGA+CGG + chr6_1:100800689-100800708 Msa0902470:intron 35.0%
TCAGATGAAGATAGTCAGAT+CGG + chr6_1:100800780-100800799 Msa0902470:intron 35.0%
TGGTGTGTATTGAATTGGAT+TGG + chr6_1:100800871-100800890 Msa0902470:intron 35.0%
! CAACAATATGTTGGTAGGTA+AGG - chr6_1:100800918-100800937 None:intergenic 35.0%
ACTGACAACAATATGTTGGT+AGG - chr6_1:100800923-100800942 None:intergenic 35.0%
CATTTATGTTGTTGTGGATC+TGG + chr6_1:100800992-100801011 Msa0902470:intron 35.0%
ATCGTTCGATCTTGATCATA+TGG + chr6_1:100801015-100801034 Msa0902470:intron 35.0%
TCGTTCGATCTTGATCATAT+GGG + chr6_1:100801016-100801035 Msa0902470:intron 35.0%
TTACAAAACAAGGGTCTGTT+TGG - chr6_1:100801348-100801367 None:intergenic 35.0%
TGTATGACTGTAAATGTGTG+AGG + chr6_1:100801393-100801412 Msa0902470:intron 35.0%
TGAGGTCAATTTCAATTAGC+AGG + chr6_1:100801411-100801430 Msa0902470:intron 35.0%
GAGGTCAATTTCAATTAGCA+GGG + chr6_1:100801412-100801431 Msa0902470:intron 35.0%
! AGCACTAACCTTTTCAGATT+TGG + chr6_1:100801796-100801815 Msa0902470:intron 35.0%
CACCAAATCCAAATCTGAAA+AGG - chr6_1:100801807-100801826 None:intergenic 35.0%
!! TTTCAGATTTGGATTTGGTG+CGG + chr6_1:100801807-100801826 Msa0902470:intron 35.0%
AGTCAACAAAACTCTGTTGT+TGG + chr6_1:100801854-100801873 Msa0902470:intron 35.0%
CTCCATTGTTAGATGAAGAT+TGG - chr6_1:100801950-100801969 None:intergenic 35.0%
! CAATGGAGATTTATTGACTG+TGG + chr6_1:100801962-100801981 Msa0902470:intron 35.0%
! TTTTCAACAGCAGACAATCT+AGG + chr6_1:100801997-100802016 Msa0902470:intron 35.0%
AATATAGCATGCATCTGACA+AGG - chr6_1:100802024-100802043 None:intergenic 35.0%
TGTTTCCATGCCATATCAAT+TGG - chr6_1:100802099-100802118 None:intergenic 35.0%
ATGGCATGGAAACAATATCA+TGG + chr6_1:100802105-100802124 Msa0902470:intron 35.0%
! CTATCTTCCTTTTTCTGATG+TGG + chr6_1:100802180-100802199 Msa0902470:intron 35.0%
! TCGGTTTGATTACCTGAAAA+AGG + chr6_1:100802256-100802275 Msa0902470:intron 35.0%
! AAGCTTTTATGAGTTTGGCT+GGG + chr6_1:100802334-100802353 Msa0902470:CDS 35.0%
TAAGACCAAGTTGTAAAGCA+AGG - chr6_1:100802517-100802536 None:intergenic 35.0%
AAAGATGAAAACCTTCTGTC+CGG - chr6_1:100802543-100802562 None:intergenic 35.0%
AGAAAGAACATACTGCTAAC+AGG - chr6_1:100802601-100802620 None:intergenic 35.0%
ATCGCTGAGAATTTGTAAGA+TGG - chr6_1:100802730-100802749 None:intergenic 35.0%
TAGCATTGTAGCATCACTAT+TGG - chr6_1:100802763-100802782 None:intergenic 35.0%
TGCAGTATTATTGTCAATCG+CGG - chr6_1:100802915-100802934 None:intergenic 35.0%
TCTTGTTAGGACAACAAAAC+TGG - chr6_1:100802958-100802977 None:intergenic 35.0%
TCGCACTTGATTTATCAAGT+CGG + chr6_1:100803007-100803026 Msa0902470:intron 35.0%
AACCATGATGCATTGTGTTT+AGG + chr6_1:100803334-100803353 Msa0902470:intron 35.0%
ATAAAGATGGTGAACTCACG+TGG - chr6_1:100799557-100799576 None:intergenic 40.0%
GCCAAATCCATTGCTTGAAA+AGG - chr6_1:100799688-100799707 None:intergenic 40.0%
! ATGGATTTGGCTTCGAATCT+CGG + chr6_1:100799697-100799716 Msa0902470:CDS 40.0%
CTCAAGAATCTCTATGATGC+TGG + chr6_1:100800094-100800113 Msa0902470:intron 40.0%
AAGCAATAATCCTGTGGTGT+TGG + chr6_1:100800382-100800401 Msa0902470:intron 40.0%
AAATCAGAATCATTCCACGC+AGG - chr6_1:100800480-100800499 None:intergenic 40.0%
TCAGCAGCAAAATCCAAAAC+TGG - chr6_1:100800564-100800583 None:intergenic 40.0%
! GTTACATGTTCGCTTTGTTG+CGG + chr6_1:100800660-100800679 Msa0902470:intron 40.0%
CCCGTCTGATCAAAATCAAA+CGG - chr6_1:100800693-100800712 None:intergenic 40.0%
!! CCGTTTGATTTTGATCAGAC+GGG + chr6_1:100800690-100800709 Msa0902470:intron 40.0%
!! CGTTTGATTTTGATCAGACG+GGG + chr6_1:100800691-100800710 Msa0902470:intron 40.0%
CGTTCGATCTTGATCATATG+GGG + chr6_1:100801017-100801036 Msa0902470:intron 40.0%
! ACACTGTTCAGGTTAACTTG+AGG - chr6_1:100801445-100801464 None:intergenic 40.0%
!! GAGAAGTATCATGCATCCTA+TGG + chr6_1:100801582-100801601 Msa0902470:CDS 40.0%
AAGTATCATGCATCCTATGG+AGG + chr6_1:100801585-100801604 Msa0902470:CDS 40.0%
! GCGACAAGCTTTTATGAGTT+TGG + chr6_1:100802329-100802348 Msa0902470:CDS 40.0%
! CAAGCTTTTATGAGTTTGGC+TGG + chr6_1:100802333-100802352 Msa0902470:CDS 40.0%
! AGCTTTTATGAGTTTGGCTG+GGG + chr6_1:100802335-100802354 Msa0902470:CDS 40.0%
ATGGACACCTTGTTGCAAAA+TGG - chr6_1:100802370-100802389 None:intergenic 40.0%
CACTTCCTTGCTTTACAACT+TGG + chr6_1:100802509-100802528 Msa0902470:CDS 40.0%
!! TTACAACTTGGTCTTAAGCC+CGG + chr6_1:100802521-100802540 Msa0902470:CDS 40.0%
AAGATGAAAACCTTCTGTCC+GGG - chr6_1:100802542-100802561 None:intergenic 40.0%
!!! TAGGTTTTGGATGTTGGTTG+TGG + chr6_1:100802655-100802674 Msa0902470:intron 40.0%
! TTGGATGTTGGTTGTGGTAT+TGG + chr6_1:100802661-100802680 Msa0902470:CDS 40.0%
! TGGATGTTGGTTGTGGTATT+GGG + chr6_1:100802662-100802681 Msa0902470:CDS 40.0%
GCTACAATGCTAAAGCATGA+TGG + chr6_1:100802771-100802790 Msa0902470:intron 40.0%
CAAAAGACGAGGAAACATAG+AGG - chr6_1:100803080-100803099 None:intergenic 40.0%
TGCCTAAACACAATGCATCA+TGG - chr6_1:100803339-100803358 None:intergenic 40.0%
AGAGAGAGAGAGAGGTTTAG+AGG - chr6_1:100799512-100799531 None:intergenic 45.0%
TATTCAAAACCACCGAGAGC+TGG + chr6_1:100800537-100800556 Msa0902470:intron 45.0%
! TGTTCGCTTTGTTGCGGATT+TGG + chr6_1:100800666-100800685 Msa0902470:intron 45.0%
GAAGATAGTCAGATCGGTAG+AGG + chr6_1:100800786-100800805 Msa0902470:intron 45.0%
TTGTAAACTTGGGCCCTGTT+TGG + chr6_1:100801059-100801078 Msa0902470:intron 45.0%
TTCATCCTCTTGACCTCCAT+AGG - chr6_1:100801601-100801620 None:intergenic 45.0%
ATGGAGGTCAAGAGGATGAA+AGG + chr6_1:100801601-100801620 Msa0902470:CDS 45.0%
! TGTTGACTGATGAAGCTGTG+TGG - chr6_1:100801842-100801861 None:intergenic 45.0%
! GCTTTTATGAGTTTGGCTGG+GGG + chr6_1:100802336-100802355 Msa0902470:CDS 45.0%
! CTTTTATGAGTTTGGCTGGG+GGG + chr6_1:100802337-100802356 Msa0902470:CDS 45.0%
TTCTTCTGATGCAGATGGGT+AGG + chr6_1:100802452-100802471 Msa0902470:intron 45.0%
TCTTCTGATGCAGATGGGTA+GGG + chr6_1:100802453-100802472 Msa0902470:intron 45.0%
! GGATGTTGGTTGTGGTATTG+GGG + chr6_1:100802663-100802682 Msa0902470:CDS 45.0%
! GATGTTGGTTGTGGTATTGG+GGG + chr6_1:100802664-100802683 Msa0902470:CDS 45.0%
GCATCACTATTGGACAGCAT+TGG - chr6_1:100802753-100802772 None:intergenic 45.0%
GGACAACAAAACTGGCAACT+AGG - chr6_1:100802950-100802969 None:intergenic 45.0%
GCGAGTCATCTGATCTTGTT+AGG - chr6_1:100802971-100802990 None:intergenic 45.0%
GATTCTGACTGCAGGGAATT+TGG + chr6_1:100803048-100803067 Msa0902470:intron 45.0%
AGACGAGGAAACATAGAGGA+TGG - chr6_1:100803076-100803095 None:intergenic 45.0%
ACAAGGAAGAGCAAAAGACG+AGG - chr6_1:100803091-100803110 None:intergenic 45.0%
ATAACGAGTACCAGATCACC+AGG + chr6_1:100803187-100803206 Msa0902470:CDS 45.0%
TAACGAGTACCAGATCACCA+GGG + chr6_1:100803188-100803207 Msa0902470:CDS 45.0%
CAAAACACATACCTTTCCCC+TGG - chr6_1:100803208-100803227 None:intergenic 45.0%
ACTCAATCGCAAAACTGGAG+TGG + chr6_1:100803549-100803568 Msa0902470:CDS 45.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr6_1:100799518-100799537 None:intergenic 50.0%
! GATTTGGCTTCGAATCTCGG+TGG + chr6_1:100799700-100799719 Msa0902470:CDS 50.0%
GAGAGTGACGCACTTATCGA+CGG - chr6_1:100799755-100799774 None:intergenic 50.0%
CCACGCAGGATGATAAAGAC+TGG - chr6_1:100800466-100800485 None:intergenic 50.0%
CCAGTCTTTATCATCCTGCG+TGG + chr6_1:100800463-100800482 Msa0902470:intron 50.0%
TCCAAAACTGGACCAGCTCT+CGG - chr6_1:100800552-100800571 None:intergenic 50.0%
TGCATCCTATGGAGGTCAAG+AGG + chr6_1:100801593-100801612 Msa0902470:CDS 50.0%
CTTCTGATGCAGATGGGTAG+GGG + chr6_1:100802454-100802473 Msa0902470:intron 50.0%
AACAGCGTGATTCTGACTGC+AGG + chr6_1:100803040-100803059 Msa0902470:intron 50.0%
ACAGCGTGATTCTGACTGCA+GGG + chr6_1:100803041-100803060 Msa0902470:intron 50.0%
TGCAGCTCGACATCTGTTAC+AGG + chr6_1:100803156-100803175 Msa0902470:intron 50.0%
AACGAGTACCAGATCACCAG+GGG + chr6_1:100803189-100803208 Msa0902470:CDS 50.0%
ATACCTTTCCCCTGGTGATC+TGG - chr6_1:100803200-100803219 None:intergenic 50.0%
CAGGCACTCAATCGCAAAAC+TGG + chr6_1:100803544-100803563 Msa0902470:intron 50.0%
AGTGACGCACTTATCGACGG+CGG - chr6_1:100799752-100799771 None:intergenic 55.0%
AAAACTGGACCAGCTCTCGG+TGG - chr6_1:100800549-100800568 None:intergenic 55.0%
! ACCGAGAGCTGGTCCAGTTT+TGG + chr6_1:100800548-100800567 Msa0902470:intron 55.0%
! ATCAGACGGGGTCCACGTTT+TGG + chr6_1:100800703-100800722 Msa0902470:intron 55.0%
! AGTCAGATCGGTAGAGGCGT+AGG + chr6_1:100800792-100800811 Msa0902470:intron 55.0%
! TGGTCTTAAGCCCGGACAGA+AGG + chr6_1:100802529-100802548 Msa0902470:CDS 55.0%
GTACCAGATCACCAGGGGAA+AGG + chr6_1:100803194-100803213 Msa0902470:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 100799434 100803576 100799434 ID=Msa0902470;Name=Msa0902470
chr6_1 mRNA 100799434 100803576 100799434 ID=Msa0902470-mRNA-1;Parent=Msa0902470;Name=Msa0902470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.87|1|0.71|0.62|8|0|201
chr6_1 exon 100799434 100799557 100799434 ID=Msa0902470-mRNA-1:exon:17846;Parent=Msa0902470-mRNA-1
chr6_1 exon 100799650 100799761 100799650 ID=Msa0902470-mRNA-1:exon:17847;Parent=Msa0902470-mRNA-1
chr6_1 exon 100801578 100801644 100801578 ID=Msa0902470-mRNA-1:exon:17848;Parent=Msa0902470-mRNA-1
chr6_1 exon 100802308 100802381 100802308 ID=Msa0902470-mRNA-1:exon:17849;Parent=Msa0902470-mRNA-1
chr6_1 exon 100802466 100802550 100802466 ID=Msa0902470-mRNA-1:exon:17850;Parent=Msa0902470-mRNA-1
chr6_1 exon 100802658 100802713 100802658 ID=Msa0902470-mRNA-1:exon:17851;Parent=Msa0902470-mRNA-1
chr6_1 exon 100803161 100803215 100803161 ID=Msa0902470-mRNA-1:exon:17852;Parent=Msa0902470-mRNA-1
chr6_1 exon 100803547 100803576 100803547 ID=Msa0902470-mRNA-1:exon:17853;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100799434 100799557 100799434 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100799650 100799761 100799650 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100801578 100801644 100801578 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100802308 100802381 100802308 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100802466 100802550 100802466 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100802658 100802713 100802658 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100803161 100803215 100803161 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
chr6_1 CDS 100803547 100803576 100803547 ID=Msa0902470-mRNA-1:cds;Parent=Msa0902470-mRNA-1
Gene Sequence

>Msa0902470

ATGACACAAAATACATCGTCACATGACACTCACTCCATATCTTTGTCCTCTTTCCTTTTTCTTTCTTTTAAAACGCCTCTAAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATCCACATCGAAACGAGGTCGTTTTTGAGTTCTGCTTTAAACCTTTTCAAGCAATGGATTTGGCTTCGAATCTCGGTGGAAAGATTGAAAAAGCTGAAGTTCTCTCCGCCGTCGATAAGTATGAGAAGTATCATGCATCCTATGGAGGTCAAGAGGATGAAAGGAAAGCTAATTATAGTGATATGGTTAATAAATACTATGATCTTGCGACAAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCAACAAGATGGGTAGGGGAATCTCTTAGAGAGAGCATCAAGCGACATGAACACTTCCTTGCTTTACAACTTGGTCTTAAGCCCGGACAGAAGGTTTTGGATGTTGGTTGTGGTATTGGGGGACCATTAAGAGAAATTTCTCGATTCAGCTCGACATCTGTTACAGGATTGAATAATAACGAGTACCAGATCACCAGGGGAAAGGCACTCAATCGCAAAACTGGAGTGGACAAG
Protein sequence

>Msa0902470

MTQNTSSHDTHSISLSSFLFLSFKTPLNLSLSLSLSLSLHPHRNEVVFEFCFKPFQAMDLASNLGGKIEKAEVLSAVDKYEKYHASYGGQEDERKANYSDMVNKYYDLATSFYEFGWGESFHFATRWVGESLRESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREISRFSSTSVTGLNNNEYQITRGKALNRKTGVDK