AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0904750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0904750 MtrunA17_Chr6g0452881 98.333 840 14 0 1 840 1 840 0.0 1707
Msa0904750 MtrunA17_Chr6g0452891 73.061 245 38 3 569 813 1 217 3.39e-119 359
Msa0904750 MtrunA17_Chr4g0037071 88.776 196 22 0 631 826 1 196 9.39e-113 343
Msa0904750 MtrunA17_Chr4g0037081 77.976 168 34 1 295 462 15 179 1.03e-80 257
Msa0904750 MtrunA17_Chr7g0265781 37.978 366 172 11 37 388 78 402 2.07e-60 222
Msa0904750 MtrunA17_Chr7g0265781 37.356 174 105 3 645 816 847 1018 2.91e-33 138
Msa0904750 MtrunA17_Chr1g0179281 37.534 365 186 11 40 394 80 412 4.59e-57 212
Msa0904750 MtrunA17_Chr1g0179281 36.207 174 105 4 645 814 838 1009 2.42e-31 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0904750 AT4G04885.1 45.339 869 364 20 1 840 22 808 0.0 634
Msa0904750 AT2G36480.2 35.754 358 180 10 41 379 88 414 4.91e-50 191
Msa0904750 AT2G36480.2 33.140 172 106 3 645 816 785 947 2.03e-25 113
Msa0904750 AT2G36480.1 35.754 358 180 10 41 379 88 414 4.91e-50 191
Msa0904750 AT2G36480.1 33.140 172 106 3 645 816 785 947 2.03e-25 113
Msa0904750 AT1G66500.1 35.326 368 157 16 496 821 68 396 8.54e-50 181
Msa0904750 AT5G43620.1 36.770 291 124 11 568 821 123 390 1.25e-45 169

Find 252 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTATGGCCTAGTTAA+AGG 0.199059 6_2:+2545197 Msa0904750:CDS
GGAAAATTGAGAGAGAAATT+AGG 0.204170 6_2:-2541697 None:intergenic
CACATAATGCACATGTATTT+TGG 0.204278 6_2:-2546728 None:intergenic
CAGCGTCACAATTTACTTAT+AGG 0.223072 6_2:+2545975 Msa0904750:CDS
TCTATTTGTCTTACGTATCT+TGG 0.237116 6_2:-2544489 None:intergenic
CATCAATGCACCATTTATAT+TGG 0.241138 6_2:-2547940 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.278868 6_2:-2546078 None:intergenic
CCCCATCATGCTGTTGATTA+TGG 0.284990 6_2:+2545185 Msa0904750:CDS
AGCAGAAGCCCTCTCGTAAA+TGG 0.298225 6_2:+2546574 Msa0904750:CDS
TCAGTGTCAAGGGTGTTTCC+TGG 0.301890 6_2:+2545599 Msa0904750:CDS
GCTTACTGCCAGAAGTTTCT+TGG 0.305569 6_2:-2545376 None:intergenic
CCTATACATGTACATAATTT+AGG 0.307610 6_2:-2547700 None:intergenic
CCTGATGGTTGATTATTAAC+TGG 0.309564 6_2:-2544408 None:intergenic
TAGGCATATGCCCTCATATA+TGG 0.310130 6_2:+2545112 Msa0904750:CDS
TTGCATTTAGCATGAATAAT+GGG 0.311414 6_2:-2546867 None:intergenic
GAAAATTGAGAGAGAAATTA+GGG 0.313585 6_2:-2541696 None:intergenic
GCATTGGCTGCAACAGTAAC+AGG 0.313592 6_2:-2545569 None:intergenic
TCTTTGACTGCCTTCTTCAT+AGG 0.318589 6_2:-2547550 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6_2:-2546825 None:intergenic
TTTGCATTTAGCATGAATAA+TGG 0.327088 6_2:-2546868 None:intergenic
GGGGTGTGAAATTGAGAAAT+TGG 0.329039 6_2:-2541719 None:intergenic
GATTGGGATGAGGTGGCATC+TGG 0.331410 6_2:-2546159 None:intergenic
TGAACAATTTCTTCTGTTGA+AGG 0.331657 6_2:-2541853 None:intergenic
GATTCGAATGGATTCCTAAC+AGG 0.333615 6_2:-2545743 None:intergenic
TGGGATGGAGCAGTAATTAC+TGG 0.337629 6_2:+2547849 Msa0904750:three_prime_UTR
TGATGAAGAGTTGGCTGTTC+CGG 0.339955 6_2:+2546695 Msa0904750:CDS
TCAAAAGCTGCAGGCAAAAC+TGG 0.340119 6_2:-2545650 None:intergenic
TGACGAACCTTCAGAGTATC+TGG 0.351247 6_2:-2546414 None:intergenic
CCACTGTAACTTATGAGTTT+CGG 0.352733 6_2:+2547611 Msa0904750:three_prime_UTR
TCTAGGAAGATTACCGTATA+AGG 0.356434 6_2:-2546454 None:intergenic
TCTGCTATGCGACATCTCTT+TGG 0.357635 6_2:+2544318 Msa0904750:CDS
TTATTCCATTAGGCGCATTA+AGG 0.358655 6_2:-2546815 None:intergenic
TTGAGAGAGAAATTAGGGTT+AGG 0.360280 6_2:-2541691 None:intergenic
CCTAAATTATGTACATGTAT+AGG 0.366794 6_2:+2547700 Msa0904750:three_prime_UTR
TATGGCCTAGTTAAAGGATT+AGG 0.367937 6_2:+2545203 Msa0904750:CDS
TGCCTATCAAGTCCAATTCT+TGG 0.377024 6_2:-2545095 None:intergenic
CTATTTGTCTTACGTATCTT+GGG 0.379077 6_2:-2544488 None:intergenic
TGAGAGAGAAATTAGGGTTA+GGG 0.380815 6_2:-2541690 None:intergenic
GTTTCATCCTCACAGGTTGC+AGG 0.381654 6_2:+2544966 Msa0904750:intron
TGGGATGGAGCGTGTGGGCC+AGG 0.382563 6_2:-2546139 None:intergenic
TACGAGAGGGCTTCTGCTTA+CGG 0.385096 6_2:-2546569 None:intergenic
GTAAGGAACTGAAAATTTGC+AGG 0.385387 6_2:-2547773 None:intergenic
TAGGCATCAATTAGTGCTCT+TGG 0.388516 6_2:-2545338 None:intergenic
ATGACTCACAATGGTACTAT+TGG 0.398029 6_2:-2545774 None:intergenic
TCTTCGTCACCACCAAGAAT+TGG 0.400029 6_2:+2545083 Msa0904750:CDS
GGCTGTTGGCTTGGTACAAA+TGG 0.400747 6_2:-2546187 None:intergenic
GGCATAACAGGTCGTACATT+TGG 0.402384 6_2:-2546040 None:intergenic
CAGCTACCTAATCAGCTTCC+TGG 0.402588 6_2:+2545881 Msa0904750:CDS
TCTGCAATCAGTGCCTTATA+CGG 0.402883 6_2:+2546441 Msa0904750:CDS
ACGTGGAGCATGCACATTTA+CGG 0.404948 6_2:-2545684 None:intergenic
GCTGATTAGGTAGCTGATAC+AGG 0.407419 6_2:-2545874 None:intergenic
GTGACTGCTGTGCTCGTCTT+GGG 0.407489 6_2:-2546508 None:intergenic
CGATTCTTTGGCCTGGCAAA+GGG 0.408289 6_2:-2546066 None:intergenic
AGAAACCGATAGTTGGTTGC+AGG 0.410939 6_2:-2545535 None:intergenic
CGCATAGCAGAATGTAAACT+TGG 0.411538 6_2:-2544306 None:intergenic
ATTGTTGTATCCAATATAAA+TGG 0.413298 6_2:+2547930 Msa0904750:three_prime_UTR
TAAATATTCATCCATATATG+AGG 0.415257 6_2:-2545123 None:intergenic
GACAAAAGCCAAGAAACTTC+TGG 0.416293 6_2:+2545368 Msa0904750:CDS
GAAGATCTTCCAACCCTACT+TGG 0.416371 6_2:-2545065 None:intergenic
GGAGCGTGTGGGCCAGGTGG+AGG 0.420614 6_2:-2546133 None:intergenic
GGCAAAGGGAGTGGCATAAC+AGG 0.420754 6_2:-2546052 None:intergenic
GACGGTGTTTGTACACTGTT+TGG 0.421276 6_2:-2545923 None:intergenic
AGAAGTATCGAACATATTCC+TGG 0.424947 6_2:-2544158 None:intergenic
TGTGACTGCTGTGCTCGTCT+TGG 0.427292 6_2:-2546509 None:intergenic
GGATTCTTCGATGGAAATAT+AGG 0.431337 6_2:-2545722 None:intergenic
CTTAGTGGTGCAGAGGCATT+GGG 0.433928 6_2:+2546618 Msa0904750:CDS
GACGTGGTTGTCCGTTACTA+AGG 0.434804 6_2:-2545310 None:intergenic
ATCAGACCAGGAAGCTGATT+AGG 0.435569 6_2:-2545887 None:intergenic
GCTTCCTTCACTCTATCTCT+TGG 0.436037 6_2:+2544113 Msa0904750:CDS
GTATACCTTAATGCGCCTAA+TGG 0.441302 6_2:+2546810 Msa0904750:CDS
CCGATTCTTTGGCCTGGCAA+AGG 0.444884 6_2:-2546067 None:intergenic
CATCAGGCGTTAATTCCCTT+AGG 0.446704 6_2:+2544424 Msa0904750:CDS
AATCCTCGTTGGTCGATTCA+AGG 0.447934 6_2:+2541780 Msa0904750:CDS
GCCATAATCAACAGCATGAT+GGG 0.449248 6_2:-2545186 None:intergenic
GCTTAGTGGTGCAGAGGCAT+TGG 0.449928 6_2:+2546617 Msa0904750:CDS
ACTGTTGGAAATGCAAATTT+CGG 0.451845 6_2:+2545011 Msa0904750:CDS
TAAGTAAATTGTGACGCTGC+TGG 0.452433 6_2:-2545971 None:intergenic
AATCGACCAACGAGGATTGA+TGG 0.453327 6_2:-2541775 None:intergenic
TATAGTTTATTGCAGTCAAA+AGG 0.456065 6_2:+2547740 Msa0904750:three_prime_UTR
GCTCGTCTTGGGATTTGAAT+CGG 0.457134 6_2:-2546497 None:intergenic
GCCTTTGTTAGTTGAGCGGC+TGG 0.457470 6_2:+2545397 Msa0904750:CDS
AGCCAATGAGATTACACCTT+GGG 0.459714 6_2:-2546248 None:intergenic
TGGAAATATAGGAGTTATGC+TGG 0.461860 6_2:-2545711 None:intergenic
TAACAGGTCGTACATTTGGC+AGG 0.462054 6_2:-2546036 None:intergenic
TCTTCCCTCCTTCTGTCTTA+CGG 0.462978 6_2:+2544355 Msa0904750:CDS
TTGGGAGCCGAATCAGCTCC+AGG 0.463136 6_2:+2546636 Msa0904750:CDS
TTCCATCGAAGAATCCTGTT+AGG 0.463431 6_2:+2545729 Msa0904750:CDS
GGGTGTGAAATTGAGAAATT+GGG 0.466361 6_2:-2541718 None:intergenic
CCAACAGTTGGCTGTTGGCT+TGG 0.468279 6_2:-2546196 None:intergenic
AAAGAAAGATGATGAAGAGT+TGG 0.468658 6_2:+2546686 Msa0904750:CDS
GATTGTTCATGCACAGGAAA+AGG 0.472985 6_2:-2545812 None:intergenic
GTTATGCCACTCCCTTTGCC+AGG 0.474289 6_2:+2546055 Msa0904750:CDS
GAATCTCCTCGACCAACTCA+TGG 0.475030 6_2:+2544453 Msa0904750:CDS
TGTGGGCCAGGTGGAGGTAA+AGG 0.475834 6_2:-2546127 None:intergenic
CTTTGGCCTGGCAAAGGGAG+TGG 0.476898 6_2:-2546061 None:intergenic
CTCTACCTAATCCTTTAACT+AGG 0.477129 6_2:-2545208 None:intergenic
TGGTACAAATGGACTAGGAT+TGG 0.478050 6_2:-2546176 None:intergenic
GGTGAAAGGTTAGACTCAAC+AGG 0.478337 6_2:+2544987 Msa0904750:CDS
TTGGCATTTATTGATTCGAA+TGG 0.478491 6_2:-2545755 None:intergenic
GGCCCAAGGTGTAATCTCAT+TGG 0.478710 6_2:+2546246 Msa0904750:CDS
TTGAACAATCTCATTGCTCA+TGG 0.479291 6_2:-2541743 None:intergenic
ACTTATAGGCCATCTTTGCC+AGG 0.479835 6_2:+2545989 Msa0904750:CDS
CCAGTTAATAATCAACCATC+AGG 0.481608 6_2:+2544408 Msa0904750:CDS
ATCAGGCGTTAATTCCCTTA+GGG 0.483589 6_2:+2544425 Msa0904750:CDS
GGCATCTGGGATGGAGCGTG+TGG 0.487332 6_2:-2546145 None:intergenic
GGATAGAAATGGTATGGATA+AGG 0.494929 6_2:+2545418 Msa0904750:CDS
CAACATCGTAATCATGCTAA+AGG 0.497052 6_2:+2541952 Msa0904750:CDS
GCGCCTAATGGAATAACAAC+AGG 0.497466 6_2:+2546822 Msa0904750:CDS
TATTTAGCTGACAATTCTAC+TGG 0.498608 6_2:+2545140 Msa0904750:CDS
GGCATAGACAGGTCACAGTT+AGG 0.499248 6_2:+2546843 Msa0904750:CDS
TATTGTGAAGAATGTTGGCC+AGG 0.499257 6_2:+2544140 Msa0904750:CDS
TTAGACTCAACAGGAACTGT+TGG 0.499630 6_2:+2544996 Msa0904750:CDS
ATAGTAAGATCAGTGATGAT+AGG 0.500445 6_2:-2541919 None:intergenic
GGTACAAATGGACTAGGATT+GGG 0.500633 6_2:-2546175 None:intergenic
GGCCATAATCAACAGCATGA+TGG 0.502882 6_2:-2545187 None:intergenic
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6_2:+2546783 Msa0904750:CDS
CTGAAGAGGAGGAGTTCGAT+TGG 0.502985 6_2:+2545465 Msa0904750:CDS
TGAATTCTTCAATTGTTCAA+AGG 0.503051 6_2:-2541590 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6_2:-2546471 None:intergenic
ATAGATTTCGTTACCTGTGA+AGG 0.506777 6_2:-2546280 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6_2:-2546756 None:intergenic
GGATGAGGTGGCATCTGGGA+TGG 0.507178 6_2:-2546154 None:intergenic
GGACCATGTCCTGGCAAAGA+TGG 0.508872 6_2:-2545998 None:intergenic
TGCGACATCTCTTTGGTACC+TGG 0.510544 6_2:+2544325 Msa0904750:CDS
TAATTTGATTAATTCACTCA+TGG 0.510613 6_2:+2546225 Msa0904750:CDS
CACCAAGAATTGGACTTGAT+AGG 0.511974 6_2:+2545093 Msa0904750:CDS
TCTGATGAGAAACCGATAGT+TGG 0.513144 6_2:-2545542 None:intergenic
TAATCAATTTGTCCCAAGTA+GGG 0.514638 6_2:+2545052 Msa0904750:CDS
CCTTTGCCAGGCCAAAGAAT+CGG 0.515014 6_2:+2546067 Msa0904750:CDS
GGATCCTTTGTAAATGCTCA+TGG 0.515592 6_2:-2547888 None:intergenic
ATAAATGGTGCATTGATGAA+TGG 0.520360 6_2:+2547945 Msa0904750:three_prime_UTR
CAATTTGTCCCAAGTAGGGT+TGG 0.520932 6_2:+2545056 Msa0904750:CDS
AGGCCATCTTTGCCAGGACA+TGG 0.522510 6_2:+2545995 Msa0904750:CDS
TTGCGACCTTTACCTCCACC+TGG 0.523511 6_2:+2546121 Msa0904750:CDS
GGAGTTATGCTGGGAGGACG+TGG 0.523802 6_2:-2545701 None:intergenic
ATTCAAACAGTAAATGCTCA+TGG 0.523956 6_2:-2547909 None:intergenic
TTGTTTCCGATTCTTTGGCC+TGG 0.524049 6_2:-2546073 None:intergenic
AACAATCTCATTGCTCATGG+TGG 0.527409 6_2:-2541740 None:intergenic
GTGTTTGTACACTGTTTGGC+GGG 0.527616 6_2:-2545919 None:intergenic
AGAGCACTAATTGATGCCTA+TGG 0.528940 6_2:+2545341 Msa0904750:CDS
TGCCTCATTTCAAAAGCTGC+AGG 0.529200 6_2:-2545659 None:intergenic
CAAAATACATGTGCATTATG+TGG 0.529245 6_2:+2546729 Msa0904750:CDS
TTCCGACTATCACCAGAAAA+CGG 0.530968 6_2:-2545260 None:intergenic
GTTGAGCGGCTGGATAGAAA+TGG 0.532637 6_2:+2545407 Msa0904750:CDS
AAGGTCGCAAAGCTCCTCCC+TGG 0.535607 6_2:-2546108 None:intergenic
TGAAGAGGAGGAGTTCGATT+GGG 0.536389 6_2:+2545466 Msa0904750:CDS
TAGATTTCGTTACCTGTGAA+GGG 0.539547 6_2:-2546279 None:intergenic
GAATAACAACAGGCATAGAC+AGG 0.540275 6_2:+2546832 Msa0904750:CDS
GGTTTCCTGCAACCAACTAT+CGG 0.543300 6_2:+2545530 Msa0904750:CDS
CCATCACAAAATCTTCAGAC+GGG 0.543390 6_2:-2546902 None:intergenic
GAGGAGATTCAGAAGCCCTA+AGG 0.544074 6_2:-2544440 None:intergenic
AGCACAGCAGTCACATGGAT+TGG 0.544101 6_2:+2546517 Msa0904750:CDS
AATATCCAACAGTTGGCTGT+TGG 0.544187 6_2:-2546201 None:intergenic
AAATTAGAATATCCAACAGT+TGG 0.545058 6_2:-2546208 None:intergenic
GGTGTTTGTACACTGTTTGG+CGG 0.545314 6_2:-2545920 None:intergenic
TTAATCAATTTGTCCCAAGT+AGG 0.545867 6_2:+2545051 Msa0904750:CDS
CTCATAGCAGGACCATGTCC+TGG 0.548016 6_2:-2546007 None:intergenic
GACAGTATTGTGAAGAATGT+TGG 0.548430 6_2:+2544135 Msa0904750:CDS
TGACACTGAAGAAGTTGCAT+TGG 0.548483 6_2:-2545585 None:intergenic
TGGCTTGGTACAAATGGACT+AGG 0.548518 6_2:-2546181 None:intergenic
GAGAAGAAGAGTTGAGTGAG+TGG 0.550334 6_2:+2545228 Msa0904750:CDS
GGCTAATCAAGCCCCTTCAC+AGG 0.551075 6_2:+2546267 Msa0904750:CDS
GCGGCTGGATAGAAATGGTA+TGG 0.551376 6_2:+2545412 Msa0904750:CDS
GTAGACCATGGTAGAAGTAA+TGG 0.552062 6_2:+2545509 Msa0904750:CDS
CCTCACAGGTTGCAGGTGAA+AGG 0.553428 6_2:+2544973 Msa0904750:intron
GGGATGGAGCAGTAATTACT+GGG 0.554304 6_2:+2547850 Msa0904750:three_prime_UTR
ATGCAACTTCTTCAGTGTCA+AGG 0.556856 6_2:+2545588 Msa0904750:CDS
CTACCATGGTCTACTACTGC+AGG 0.557738 6_2:-2545500 None:intergenic
GCATCTGGGATGGAGCGTGT+GGG 0.559981 6_2:-2546144 None:intergenic
ATCTTCCGTAAGACAGAAGG+AGG 0.562765 6_2:-2544360 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6_2:-2545731 None:intergenic
CTAAGGGAATTAACGCCTGA+TGG 0.563337 6_2:-2544423 None:intergenic
ATTGGGATGAGGTGGCATCT+GGG 0.564645 6_2:-2546158 None:intergenic
TGCAACTTCTTCAGTGTCAA+GGG 0.565136 6_2:+2545589 Msa0904750:CDS
CCAAGCCAACAGCCAACTGT+TGG 0.566173 6_2:+2546196 Msa0904750:CDS
TGCATTTAGCATGAATAATG+GGG 0.566230 6_2:-2546866 None:intergenic
TATTTGCAACCGTATTGTTG+AGG 0.569428 6_2:+2541987 Msa0904750:CDS
ATGCAGGGCACCTATGAAGA+AGG 0.570350 6_2:+2547540 Msa0904750:intron
CTATCAAGTCCAATTCTTGG+TGG 0.571361 6_2:-2545092 None:intergenic
TCCATCACAAAATCTTCAGA+CGG 0.571706 6_2:-2546903 None:intergenic
ACAATCTCATTGCTCATGGT+GGG 0.574651 6_2:-2541739 None:intergenic
TCAATATTTGAATTGAGACC+AGG 0.575901 6_2:-2545617 None:intergenic
ATTAATTCACTCATGGCCCA+AGG 0.576294 6_2:+2546232 Msa0904750:CDS
AAGATCTTCCAACCCTACTT+GGG 0.576601 6_2:-2545064 None:intergenic
GTAAGCCTTTGTTAGTTGAG+CGG 0.577243 6_2:+2545393 Msa0904750:CDS
AACAGGTCGTACATTTGGCA+GGG 0.583155 6_2:-2546035 None:intergenic
TAGCTGACAATTCTACTGGT+AGG 0.585559 6_2:+2545144 Msa0904750:CDS
CCTAGACAGTGCACAACTTG+TGG 0.586792 6_2:+2546471 Msa0904750:CDS
AATAGTACCATTGTGAGTCA+TGG 0.588735 6_2:+2545776 Msa0904750:CDS
ACAGGTCGTACATTTGGCAG+GGG 0.590048 6_2:-2546034 None:intergenic
GATGGAGCGTGTGGGCCAGG+TGG 0.590396 6_2:-2546136 None:intergenic
AGCAGTAATTACTGGGGACA+TGG 0.590558 6_2:+2547857 Msa0904750:three_prime_UTR
TGCAACGATTGTTCATGCAC+AGG 0.594090 6_2:-2545818 None:intergenic
GGACTAGGATTGGGATGAGG+TGG 0.594447 6_2:-2546166 None:intergenic
AATTACTGGGGACATGGCAA+AGG 0.594802 6_2:+2547863 Msa0904750:three_prime_UTR
AGACGAGCACAGCAGTCACA+TGG 0.599845 6_2:+2546512 Msa0904750:CDS
AGATTTCGTTACCTGTGAAG+GGG 0.600998 6_2:-2546278 None:intergenic
AGTGAGACGATGTGGCTTAG+TGG 0.601641 6_2:+2546603 Msa0904750:CDS
AATCTCCTCGACCAACTCAT+GGG 0.602277 6_2:+2544454 Msa0904750:CDS
GTTTGATCCAGATACTCTGA+AGG 0.602293 6_2:+2546407 Msa0904750:CDS
AGGAGATTCAGAAGCCCTAA+GGG 0.603089 6_2:-2544439 None:intergenic
TCAATCTTCCGTAAGACAGA+AGG 0.606789 6_2:-2544363 None:intergenic
CTCACAAACCATTTACGAGA+GGG 0.607148 6_2:-2546582 None:intergenic
GGAAACCATTACTTCTACCA+TGG 0.608961 6_2:-2545514 None:intergenic
TCCAGCCGCTCAACTAACAA+AGG 0.610598 6_2:-2545398 None:intergenic
GGGTTAGATGAAATCAGACC+AGG 0.611439 6_2:-2545899 None:intergenic
GGAAATATAGGAGTTATGCT+GGG 0.611878 6_2:-2545710 None:intergenic
TTAACATGTATCCCATGAGT+TGG 0.613297 6_2:-2544465 None:intergenic
TGTGACGCTGCTGGATCCTG+AGG 0.613390 6_2:-2545962 None:intergenic
AACGTCGTGAAGAAGATCCT+CGG 0.613895 6_2:+2541815 Msa0904750:CDS
CCTCCACCATCAATCCTCGT+TGG 0.618578 6_2:+2541769 Msa0904750:CDS
TGTATCCCATGAGTTGGTCG+AGG 0.619165 6_2:-2544459 None:intergenic
AAAGCTGCAGGCAAAACTGG+TGG 0.620190 6_2:-2545647 None:intergenic
AAATATTCATCCATATATGA+GGG 0.620513 6_2:-2545122 None:intergenic
ATGTACATAATTTAGGCAAG+AGG 0.623567 6_2:-2547693 None:intergenic
CGACCAACGAGGATTGATGG+TGG 0.625674 6_2:-2541772 None:intergenic
GACGCTGCTGGATCCTGAGG+TGG 0.626580 6_2:-2545959 None:intergenic
CCAACGAGGATTGATGGTGG+AGG 0.631737 6_2:-2541769 None:intergenic
ATGGCAGAATACTGAAGAGG+AGG 0.632607 6_2:+2545454 Msa0904750:CDS
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6_2:+2546772 Msa0904750:CDS
CAATCTCATTGCTCATGGTG+GGG 0.637259 6_2:-2541738 None:intergenic
CGTCTTGGGATTTGAATCGG+AGG 0.638892 6_2:-2546494 None:intergenic
CTGTCCAAGAGATAGAGTGA+AGG 0.641585 6_2:-2544117 None:intergenic
AATGGACTAGGATTGGGATG+AGG 0.642770 6_2:-2546169 None:intergenic
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6_2:+2546704 Msa0904750:CDS
CCGAAACTCATAAGTTACAG+TGG 0.652773 6_2:-2547611 None:intergenic
TGTCTTACGGAAGATTGACG+TGG 0.654293 6_2:+2544368 Msa0904750:CDS
ATAAGGTTATGACAACATCA+TGG 0.656509 6_2:+2545435 Msa0904750:CDS
AATTAGACCATGACTCACAA+TGG 0.658655 6_2:-2545783 None:intergenic
ATAAACTATAGATGTTACAC+AGG 0.660062 6_2:-2547727 None:intergenic
CTGCAGGCAAAACTGGTGGA+CGG 0.660560 6_2:-2545643 None:intergenic
ATGACATATAGCCTTAGTAA+CGG 0.660592 6_2:+2545299 Msa0904750:CDS
TAGCCAATGAGATTACACCT+TGG 0.661273 6_2:-2546249 None:intergenic
GATGTGGCTTAGTGGTGCAG+AGG 0.663497 6_2:+2546611 Msa0904750:CDS
ATCATGGCAGAATACTGAAG+AGG 0.665757 6_2:+2545451 Msa0904750:CDS
TAACCTACTTCGGGTAGACG+CGG 0.669168 6_2:-2544183 None:intergenic
CATCACAAAATCTTCAGACG+GGG 0.674739 6_2:-2546901 None:intergenic
CCATAATCAACAGCATGATG+GGG 0.676024 6_2:-2545185 None:intergenic
CAGGTCGTACATTTGGCAGG+GGG 0.677425 6_2:-2546033 None:intergenic
ACTCACAAACCATTTACGAG+AGG 0.681960 6_2:-2546583 None:intergenic
GGATCCATGAGCATTTACAA+AGG 0.684536 6_2:+2547884 Msa0904750:three_prime_UTR
GTGCATGAACAATCGTTGCA+CGG 0.685001 6_2:+2545821 Msa0904750:CDS
AGTCCTGCAGTAGTAGACCA+TGG 0.689778 6_2:+2545497 Msa0904750:CDS
GGTTGCGAATTTCTCAACCG+AGG 0.700396 6_2:-2541832 None:intergenic
GCAGTCAAAGAAAACGAATG+CGG 0.700511 6_2:+2547562 Msa0904750:CDS
GGTTTGTGAGTGAGACGATG+TGG 0.720083 6_2:+2546595 Msa0904750:CDS
TCTTCCGTAAGACAGAAGGA+GGG 0.728444 6_2:-2544359 None:intergenic
GCAGAATCTTCTGAAATACG+TGG 0.729536 6_2:+2547670 Msa0904750:three_prime_UTR
AATATAGGAGTTATGCTGGG+AGG 0.735215 6_2:-2545707 None:intergenic
GGATGGAGCAGTAATTACTG+GGG 0.757111 6_2:+2547851 Msa0904750:three_prime_UTR
TTTGCCAACTGAGACCACTG+AGG 0.763418 6_2:+2546662 Msa0904750:CDS
AAGCCTTGAATCGACCAACG+AGG 0.765396 6_2:-2541783 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTAATAATTGTTTATT+TGG + chr6_2:2542236-2542255 Msa0904750:intron 10.0%
!! TGATTAATAATTGTTTATTT+GGG + chr6_2:2542237-2542256 Msa0904750:intron 10.0%
!! ATAATTTCGTTTAATAATAA+TGG + chr6_2:2542707-2542726 Msa0904750:intron 10.0%
!! TAATTTCGTTTAATAATAAT+GGG + chr6_2:2542708-2542727 Msa0904750:intron 10.0%
!! ATATAATATAATTACAAAGT+TGG - chr6_2:2546364-2546383 None:intergenic 10.0%
!! TGTAATTATATTATATTTGT+AGG + chr6_2:2546368-2546387 Msa0904750:intron 10.0%
!!! ACAATTTTAAAAGATTTTTT+GGG - chr6_2:2547809-2547828 None:intergenic 10.0%
!! AATTTCGTTTAATAATAATG+GGG + chr6_2:2542709-2542728 Msa0904750:intron 15.0%
!! ACAAAATAACATATTAACAT+AGG - chr6_2:2543229-2543248 None:intergenic 15.0%
!! TATTTATAGAAAATGATAAG+TGG - chr6_2:2543499-2543518 None:intergenic 15.0%
!! AAATGAAATAGAAAAGAAAA+AGG - chr6_2:2543981-2544000 None:intergenic 15.0%
!! ATAACAGAATTAAATCATTT+AGG - chr6_2:2544227-2544246 None:intergenic 15.0%
!!! AAATATTTTAATTTCTGTTG+AGG + chr6_2:2544787-2544806 Msa0904750:intron 15.0%
!!! CAATTTTAAAAGATTTTTTG+GGG - chr6_2:2547808-2547827 None:intergenic 15.0%
!!! GACAATTTTAAAAGATTTTT+TGG - chr6_2:2547810-2547829 None:intergenic 15.0%
!!! ATTTCTTTTACATTATTTCT+GGG + chr6_2:2547830-2547849 Msa0904750:three_prime_UTR 15.0%
!!! TTTTAGTTCATTTCATTTGA+TGG + chr6_2:2542176-2542195 Msa0904750:intron 20.0%
!!! TTTAGTTCATTTCATTTGAT+GGG + chr6_2:2542177-2542196 Msa0904750:intron 20.0%
!! ATAATTGTTTATTTGGGAAT+TGG + chr6_2:2542243-2542262 Msa0904750:intron 20.0%
!!! TGAAAGTAATGATTTTTTTG+AGG + chr6_2:2542270-2542289 Msa0904750:intron 20.0%
!!! AGTACTTAAAAATCGATTTT+TGG + chr6_2:2542627-2542646 Msa0904750:intron 20.0%
!!! TTTAATAATAATGGGGTTTA+TGG + chr6_2:2542716-2542735 Msa0904750:intron 20.0%
!! CAAAATCATTCAATTTATTC+AGG - chr6_2:2543099-2543118 None:intergenic 20.0%
!!! CTGAATAAATTGAATGATTT+TGG + chr6_2:2543097-2543116 Msa0904750:intron 20.0%
!! CTCTTCTTATTAAGTTTATA+CGG + chr6_2:2543670-2543689 Msa0904750:intron 20.0%
!! TCTTCTTATTAAGTTTATAC+GGG + chr6_2:2543671-2543690 Msa0904750:intron 20.0%
!! AAATAAGTTTGATTCTTTGT+TGG + chr6_2:2543717-2543736 Msa0904750:intron 20.0%
!! CCTGAAAAAAAATAAACAAT+TGG - chr6_2:2544077-2544096 None:intergenic 20.0%
!!! CCAATTGTTTATTTTTTTTC+AGG + chr6_2:2544074-2544093 Msa0904750:intron 20.0%
!!! TAAGACATAAGATTTTAGAA+AGG - chr6_2:2544767-2544786 None:intergenic 20.0%
!! AAATATTCATCCATATATGA+GGG - chr6_2:2545125-2545144 None:intergenic 20.0%
!! TAAATATTCATCCATATATG+AGG - chr6_2:2545126-2545145 None:intergenic 20.0%
!! TAATTTGATTAATTCACTCA+TGG + chr6_2:2546225-2546244 Msa0904750:CDS 20.0%
!!! TTATATTTGTAGGATTTTGT+TGG + chr6_2:2546378-2546397 Msa0904750:intron 20.0%
!!! TTATTTTTTTACTTTCCCAA+TGG + chr6_2:2547158-2547177 Msa0904750:intron 20.0%
!!! CATTTCTTTTACATTATTTC+TGG + chr6_2:2547829-2547848 Msa0904750:three_prime_UTR 20.0%
!! ATTGTTGTATCCAATATAAA+TGG + chr6_2:2547930-2547949 Msa0904750:three_prime_UTR 20.0%
! TGAATTCTTCAATTGTTCAA+AGG - chr6_2:2541593-2541612 None:intergenic 25.0%
!!! AAACATTAAGGGTTTTGAAA+CGG - chr6_2:2541649-2541668 None:intergenic 25.0%
! GAAAATTGAGAGAGAAATTA+GGG - chr6_2:2541699-2541718 None:intergenic 25.0%
! AAACAAAAACCTCAACAATA+CGG - chr6_2:2541999-2542018 None:intergenic 25.0%
! ATAACTCTTAATCTGAACAA+TGG - chr6_2:2542050-2542069 None:intergenic 25.0%
!! TTAGTTTATTGCTATTCGAT+AGG + chr6_2:2542140-2542159 Msa0904750:intron 25.0%
! TGAAAATGATAAGGATTACA+TGG + chr6_2:2542335-2542354 Msa0904750:intron 25.0%
!! TTGATAACATTGTTAACAGA+TGG + chr6_2:2542557-2542576 Msa0904750:intron 25.0%
! TAAGTACTCAATTGTGTTAA+TGG - chr6_2:2542615-2542634 None:intergenic 25.0%
! ACTAACTATTTCACTTTCAT+TGG - chr6_2:2542655-2542674 None:intergenic 25.0%
! TGAAATAGTTAGTGTATCAA+TGG + chr6_2:2542662-2542681 Msa0904750:intron 25.0%
! ATAATAGGAATTAGGAATTC+AGG + chr6_2:2542751-2542770 Msa0904750:intron 25.0%
! ACAAACATTTCATCTGAAAA+GGG + chr6_2:2542868-2542887 Msa0904750:intron 25.0%
! GAAATAAATGAGAATGAACA+AGG + chr6_2:2543049-2543068 Msa0904750:intron 25.0%
! GAAATATATATGAAGTAAGC+TGG - chr6_2:2543203-2543222 None:intergenic 25.0%
! CGTATAAACTTAATAAGAAG+AGG - chr6_2:2543672-2543691 None:intergenic 25.0%
!! GAATCAAACTTATTTCTCAT+TGG - chr6_2:2543712-2543731 None:intergenic 25.0%
! TTTGTTGGAAAAATCATACA+GGG + chr6_2:2543732-2543751 Msa0904750:intron 25.0%
! CTAAAATCAAAATTGATACG+AGG - chr6_2:2543789-2543808 None:intergenic 25.0%
! ACTTTGTAAGAATTGGTTAA+AGG + chr6_2:2543835-2543854 Msa0904750:intron 25.0%
! TAAGAATTGGTTAAAGGATT+CGG + chr6_2:2543841-2543860 Msa0904750:intron 25.0%
! AAATTACAATAACCTACTTC+GGG - chr6_2:2544195-2544214 None:intergenic 25.0%
! CAAATTACAATAACCTACTT+CGG - chr6_2:2544196-2544215 None:intergenic 25.0%
!! GTACTCCTTACAAAATATTT+TGG + chr6_2:2544562-2544581 Msa0904750:intron 25.0%
!!! TCCTTACAAAATATTTTGGA+TGG + chr6_2:2544566-2544585 Msa0904750:intron 25.0%
!! TCCATCCAAAATATTTTGTA+AGG - chr6_2:2544570-2544589 None:intergenic 25.0%
! ATTTAGTTGCGGATTTAATA+AGG + chr6_2:2544600-2544619 Msa0904750:intron 25.0%
! AAATTAGAATATCCAACAGT+TGG - chr6_2:2546211-2546230 None:intergenic 25.0%
! TTGCATTTAGCATGAATAAT+GGG - chr6_2:2546870-2546889 None:intergenic 25.0%
! TTTGCATTTAGCATGAATAA+TGG - chr6_2:2546871-2546890 None:intergenic 25.0%
! GAAAAAATATAGTTCAATGC+TGG - chr6_2:2547009-2547028 None:intergenic 25.0%
! ATGTGCAATTTACGATATAA+TGG - chr6_2:2547266-2547285 None:intergenic 25.0%
!! ATATCGTAAATTGCACATTT+TGG + chr6_2:2547268-2547287 Msa0904750:intron 25.0%
! CCTATACATGTACATAATTT+AGG - chr6_2:2547703-2547722 None:intergenic 25.0%
! CCTAAATTATGTACATGTAT+AGG + chr6_2:2547700-2547719 Msa0904750:three_prime_UTR 25.0%
! ATAAACTATAGATGTTACAC+AGG - chr6_2:2547730-2547749 None:intergenic 25.0%
! TATAGTTTATTGCAGTCAAA+AGG + chr6_2:2547740-2547759 Msa0904750:three_prime_UTR 25.0%
GGAAAATTGAGAGAGAAATT+AGG - chr6_2:2541700-2541719 None:intergenic 30.0%
TGAACAATTTCTTCTGTTGA+AGG - chr6_2:2541856-2541875 None:intergenic 30.0%
ATAGTAAGATCAGTGATGAT+AGG - chr6_2:2541922-2541941 None:intergenic 30.0%
! TGGTGTGGAATTTTACAAAA+GGG - chr6_2:2542030-2542049 None:intergenic 30.0%
! ATGGTGTGGAATTTTACAAA+AGG - chr6_2:2542031-2542050 None:intergenic 30.0%
TTAAACCAATTAGTAGCATC+TGG + chr6_2:2542307-2542326 Msa0904750:intron 30.0%
TAAACCAATTAGTAGCATCT+GGG + chr6_2:2542308-2542327 Msa0904750:intron 30.0%
ATGTTATCAATCACAAATCG+CGG - chr6_2:2542547-2542566 None:intergenic 30.0%
AATAGTTAGTGTATCAATGG+TGG + chr6_2:2542665-2542684 Msa0904750:intron 30.0%
ATTCCTATTATATCCACCAT+AGG - chr6_2:2542742-2542761 None:intergenic 30.0%
! TGGTGGATATAATAGGAATT+AGG + chr6_2:2542743-2542762 Msa0904750:intron 30.0%
GACAAACATTTCATCTGAAA+AGG + chr6_2:2542867-2542886 Msa0904750:intron 30.0%
! GCTGAAATGATTAAGTCTTT+TGG + chr6_2:2542910-2542929 Msa0904750:intron 30.0%
ACTTGCTTGGAGTAAATATT+AGG + chr6_2:2543133-2543152 Msa0904750:intron 30.0%
TACTTATGCTAGAAGATTGT+TGG + chr6_2:2543315-2543334 Msa0904750:intron 30.0%
ACTTATGCTAGAAGATTGTT+GGG + chr6_2:2543316-2543335 Msa0904750:intron 30.0%
GGATTGAAAATTGGCATTAT+AGG - chr6_2:2543522-2543541 None:intergenic 30.0%
GTAGTAAGAGGATTGAAAAT+TGG - chr6_2:2543531-2543550 None:intergenic 30.0%
AAAGTGTGTTATGTAGTAAG+AGG - chr6_2:2543543-2543562 None:intergenic 30.0%
TGCTTTATCTTTGTCAACAT+TGG + chr6_2:2543597-2543616 Msa0904750:intron 30.0%
CTTTGTTGGAAAAATCATAC+AGG + chr6_2:2543731-2543750 Msa0904750:intron 30.0%
ATCAAAATTGATACGAGGTT+AGG - chr6_2:2543784-2543803 None:intergenic 30.0%
ATTTATCGTCACTAATCTCT+GGG + chr6_2:2543811-2543830 Msa0904750:intron 30.0%
! CATTTTGCATGATGAGTTAT+GGG - chr6_2:2543907-2543926 None:intergenic 30.0%
! ACATTTTGCATGATGAGTTA+TGG - chr6_2:2543908-2543927 None:intergenic 30.0%
CTATTTGTCTTACGTATCTT+GGG - chr6_2:2544491-2544510 None:intergenic 30.0%
TCTATTTGTCTTACGTATCT+TGG - chr6_2:2544492-2544511 None:intergenic 30.0%
GGATTTAATAAGGATGTGTT+TGG + chr6_2:2544610-2544629 Msa0904750:intron 30.0%
ACAAAAATCACATTGAGTTC+TGG - chr6_2:2544695-2544714 None:intergenic 30.0%
! AGAACTCAATGTGATTTTTG+TGG + chr6_2:2544694-2544713 Msa0904750:intron 30.0%
CTATTTCCTTGTATTCAGTA+AGG + chr6_2:2544841-2544860 Msa0904750:intron 30.0%
ACTGTTGGAAATGCAAATTT+CGG + chr6_2:2545011-2545030 Msa0904750:CDS 30.0%
TTAATCAATTTGTCCCAAGT+AGG + chr6_2:2545051-2545070 Msa0904750:CDS 30.0%
TAATCAATTTGTCCCAAGTA+GGG + chr6_2:2545052-2545071 Msa0904750:CDS 30.0%
TATTTAGCTGACAATTCTAC+TGG + chr6_2:2545140-2545159 Msa0904750:CDS 30.0%
! ATGACATATAGCCTTAGTAA+CGG + chr6_2:2545299-2545318 Msa0904750:CDS 30.0%
ATAAGGTTATGACAACATCA+TGG + chr6_2:2545435-2545454 Msa0904750:CDS 30.0%
TCAATATTTGAATTGAGACC+AGG - chr6_2:2545620-2545639 None:intergenic 30.0%
!! TTGGCATTTATTGATTCGAA+TGG - chr6_2:2545758-2545777 None:intergenic 30.0%
! AAACAACTCTTTTCATTTCC+AGG + chr6_2:2546090-2546109 Msa0904750:CDS 30.0%
! AACAACTCTTTTCATTTCCA+GGG + chr6_2:2546091-2546110 Msa0904750:CDS 30.0%
GTCAAAAATGGAAGGAAAAT+GGG - chr6_2:2546330-2546349 None:intergenic 30.0%
AGTCAAAAATGGAAGGAAAA+TGG - chr6_2:2546331-2546350 None:intergenic 30.0%
AAAGAAAGATGATGAAGAGT+TGG + chr6_2:2546686-2546705 Msa0904750:CDS 30.0%
! CACATAATGCACATGTATTT+TGG - chr6_2:2546731-2546750 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6_2:2546729-2546748 Msa0904750:CDS 30.0%
TGCATTTAGCATGAATAATG+GGG - chr6_2:2546869-2546888 None:intergenic 30.0%
! GAATAAATCTAGTTCAATGC+TGG - chr6_2:2547132-2547151 None:intergenic 30.0%
! CAAAAACACGTTTTACCATT+GGG - chr6_2:2547176-2547195 None:intergenic 30.0%
!! AATGGTAAAACGTGTTTTTG+CGG + chr6_2:2547176-2547195 Msa0904750:intron 30.0%
TTTGCAAAACATGACATAGA+AGG - chr6_2:2547331-2547350 None:intergenic 30.0%
! TATGTCATGTTTTGCAAATG+TGG + chr6_2:2547333-2547352 Msa0904750:intron 30.0%
! TTTTGCAAATGTGGATATCA+TGG + chr6_2:2547342-2547361 Msa0904750:intron 30.0%
GAAGTTAGCAGTGATTAAAT+AGG - chr6_2:2547448-2547467 None:intergenic 30.0%
TAAGTTACAGTGGACAAAAA+TGG - chr6_2:2547604-2547623 None:intergenic 30.0%
ATGTACATAATTTAGGCAAG+AGG - chr6_2:2547696-2547715 None:intergenic 30.0%
!!! CTTTTACATTATTTCTGGGA+TGG + chr6_2:2547834-2547853 Msa0904750:three_prime_UTR 30.0%
ATTCAAACAGTAAATGCTCA+TGG - chr6_2:2547912-2547931 None:intergenic 30.0%
CATCAATGCACCATTTATAT+TGG - chr6_2:2547943-2547962 None:intergenic 30.0%
! ATAAATGGTGCATTGATGAA+TGG + chr6_2:2547945-2547964 Msa0904750:three_prime_UTR 30.0%
GGGGGAAAATGAAACATTAA+GGG - chr6_2:2541660-2541679 None:intergenic 35.0%
TGGGGGAAAATGAAACATTA+AGG - chr6_2:2541661-2541680 None:intergenic 35.0%
!!! AGGGTTAGGGTTTTGAATTT+GGG - chr6_2:2541680-2541699 None:intergenic 35.0%
!!! TAGGGTTAGGGTTTTGAATT+TGG - chr6_2:2541681-2541700 None:intergenic 35.0%
TGAGAGAGAAATTAGGGTTA+GGG - chr6_2:2541693-2541712 None:intergenic 35.0%
TTGAGAGAGAAATTAGGGTT+AGG - chr6_2:2541694-2541713 None:intergenic 35.0%
GGGTGTGAAATTGAGAAATT+GGG - chr6_2:2541721-2541740 None:intergenic 35.0%
TTGAACAATCTCATTGCTCA+TGG - chr6_2:2541746-2541765 None:intergenic 35.0%
CAACATCGTAATCATGCTAA+AGG + chr6_2:2541952-2541971 Msa0904750:CDS 35.0%
TATTTGCAACCGTATTGTTG+AGG + chr6_2:2541987-2542006 Msa0904750:CDS 35.0%
! GTGTGGAATTTTACAAAAGG+GGG - chr6_2:2542028-2542047 None:intergenic 35.0%
! GGTGTGGAATTTTACAAAAG+GGG - chr6_2:2542029-2542048 None:intergenic 35.0%
TCTTAATCTGAACAATGGTG+TGG - chr6_2:2542045-2542064 None:intergenic 35.0%
!!! TTTGATGGGTTTCACAGTTT+TGG + chr6_2:2542191-2542210 Msa0904750:intron 35.0%
CTGGGCAATTGAAAATGATA+AGG + chr6_2:2542326-2542345 Msa0904750:intron 35.0%
TTAAACGAAATTATGTGCCC+TGG - chr6_2:2542701-2542720 None:intergenic 35.0%
! ATATGAGTTACCTGGGTTTT+AGG + chr6_2:2543014-2543033 Msa0904750:intron 35.0%
AACATTAGCGTATACTTGCT+TGG + chr6_2:2543120-2543139 Msa0904750:intron 35.0%
TTTAGACAAGCTGTTAACCA+AGG + chr6_2:2543287-2543306 Msa0904750:intron 35.0%
ATGTCATCTAACTGACTGTT+AGG + chr6_2:2543350-2543369 Msa0904750:intron 35.0%
CGAACTGGTAAGAATATGTT+AGG - chr6_2:2543454-2543473 None:intergenic 35.0%
! GAAAATGATAAGTGGTGATG+AGG - chr6_2:2543491-2543510 None:intergenic 35.0%
! AGGGACTCTTACAAAAGTAT+TGG + chr6_2:2543751-2543770 Msa0904750:intron 35.0%
GATTTATCGTCACTAATCTC+TGG + chr6_2:2543810-2543829 Msa0904750:intron 35.0%
TCTGGGAACTTTGTAAGAAT+TGG + chr6_2:2543828-2543847 Msa0904750:intron 35.0%
ATTGGAGACCATACAAATAG+CGG - chr6_2:2544059-2544078 None:intergenic 35.0%
GACAGTATTGTGAAGAATGT+TGG + chr6_2:2544135-2544154 Msa0904750:CDS 35.0%
!! AGAAGTATCGAACATATTCC+TGG - chr6_2:2544161-2544180 None:intergenic 35.0%
! TATAGTTCTATTGTCTGCCT+AGG + chr6_2:2544254-2544273 Msa0904750:intron 35.0%
CCTGATGGTTGATTATTAAC+TGG - chr6_2:2544411-2544430 None:intergenic 35.0%
CCAGTTAATAATCAACCATC+AGG + chr6_2:2544408-2544427 Msa0904750:CDS 35.0%
TTAACATGTATCCCATGAGT+TGG - chr6_2:2544468-2544487 None:intergenic 35.0%
! GTAAGGAGTACAGATTTGAA+GGG - chr6_2:2544553-2544572 None:intergenic 35.0%
! TGTAAGGAGTACAGATTTGA+AGG - chr6_2:2544554-2544573 None:intergenic 35.0%
AACTGCATCTCATTTAGTTG+CGG + chr6_2:2544589-2544608 Msa0904750:intron 35.0%
CAAAGTCCTTACTGAATACA+AGG - chr6_2:2544850-2544869 None:intergenic 35.0%
GACTTTGTTCTACATGAAAC+TGG + chr6_2:2544863-2544882 Msa0904750:intron 35.0%
GTTGATTATGGCCTAGTTAA+AGG + chr6_2:2545197-2545216 Msa0904750:CDS 35.0%
TATGGCCTAGTTAAAGGATT+AGG + chr6_2:2545203-2545222 Msa0904750:CDS 35.0%
CTCTACCTAATCCTTTAACT+AGG - chr6_2:2545211-2545230 None:intergenic 35.0%
GGATAGAAATGGTATGGATA+AGG + chr6_2:2545418-2545437 Msa0904750:CDS 35.0%
GGAAATATAGGAGTTATGCT+GGG - chr6_2:2545713-2545732 None:intergenic 35.0%
TGGAAATATAGGAGTTATGC+TGG - chr6_2:2545714-2545733 None:intergenic 35.0%
GGATTCTTCGATGGAAATAT+AGG - chr6_2:2545725-2545744 None:intergenic 35.0%
ATGACTCACAATGGTACTAT+TGG - chr6_2:2545777-2545796 None:intergenic 35.0%
AATAGTACCATTGTGAGTCA+TGG + chr6_2:2545776-2545795 Msa0904750:CDS 35.0%
AATTAGACCATGACTCACAA+TGG - chr6_2:2545786-2545805 None:intergenic 35.0%
CAGCGTCACAATTTACTTAT+AGG + chr6_2:2545975-2545994 Msa0904750:CDS 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6_2:2546081-2546100 None:intergenic 35.0%
TAGATTTCGTTACCTGTGAA+GGG - chr6_2:2546282-2546301 None:intergenic 35.0%
ATAGATTTCGTTACCTGTGA+AGG - chr6_2:2546283-2546302 None:intergenic 35.0%
TCTAGGAAGATTACCGTATA+AGG - chr6_2:2546457-2546476 None:intergenic 35.0%
!! GCTTACGGTTTTTAGACATA+CGG - chr6_2:2546557-2546576 None:intergenic 35.0%
! ATCATCTTTCTTTTCCTCAG+TGG - chr6_2:2546679-2546698 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6_2:2546743-2546762 Msa0904750:CDS 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6_2:2546759-2546778 None:intergenic 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6_2:2546764-2546783 Msa0904750:CDS 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6_2:2546818-2546837 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6_2:2546828-2546847 None:intergenic 35.0%
TCCATCACAAAATCTTCAGA+CGG - chr6_2:2546906-2546925 None:intergenic 35.0%
!!! AAGATTTTGTGATGGACGAA+GGG + chr6_2:2546910-2546929 Msa0904750:CDS 35.0%
! GCAAAAACACGTTTTACCAT+TGG - chr6_2:2547177-2547196 None:intergenic 35.0%
!! ATGGTAAAACGTGTTTTTGC+GGG + chr6_2:2547177-2547196 Msa0904750:intron 35.0%
TCACAATAGATTGCAACACT+AGG + chr6_2:2547366-2547385 Msa0904750:intron 35.0%
CCACTGTAACTTATGAGTTT+CGG + chr6_2:2547611-2547630 Msa0904750:three_prime_UTR 35.0%
GTAAGGAACTGAAAATTTGC+AGG - chr6_2:2547776-2547795 None:intergenic 35.0%
!!! AGATTTTTTGGGGACAGTAA+AGG - chr6_2:2547798-2547817 None:intergenic 35.0%
!!! GGTTAGGGTTTTGAATTTGG+GGG - chr6_2:2541678-2541697 None:intergenic 40.0%
!!! GGGTTAGGGTTTTGAATTTG+GGG - chr6_2:2541679-2541698 None:intergenic 40.0%
GGGGTGTGAAATTGAGAAAT+TGG - chr6_2:2541722-2541741 None:intergenic 40.0%
ACAATCTCATTGCTCATGGT+GGG - chr6_2:2541742-2541761 None:intergenic 40.0%
AACAATCTCATTGCTCATGG+TGG - chr6_2:2541743-2541762 None:intergenic 40.0%
ATTGCCCAGATGCTACTAAT+TGG - chr6_2:2542315-2542334 None:intergenic 40.0%
TGAACGATGCTGTCAAATAC+CGG + chr6_2:2542389-2542408 Msa0904750:intron 40.0%
CAATCACAAATCGCGGAAAA+CGG - chr6_2:2542540-2542559 None:intergenic 40.0%
!! AATGGTGGATTATAGAAGCC+AGG + chr6_2:2542680-2542699 Msa0904750:intron 40.0%
!! ATGGTGGATTATAGAAGCCA+GGG + chr6_2:2542681-2542700 Msa0904750:intron 40.0%
! ATAATGGGGTTTATGGCCTA+TGG + chr6_2:2542723-2542742 Msa0904750:intron 40.0%
!! TGGCCTATGGTGGATATAAT+AGG + chr6_2:2542736-2542755 Msa0904750:intron 40.0%
TTAGGAATTCAGGACGATGA+TGG + chr6_2:2542761-2542780 Msa0904750:intron 40.0%
TACTGTATTCCAACTTGAGC+AGG - chr6_2:2542939-2542958 None:intergenic 40.0%
GATGATAAGCTGTGAGGATT+TGG - chr6_2:2542964-2542983 None:intergenic 40.0%
AACTCAGATGATAAGCTGTG+AGG - chr6_2:2542970-2542989 None:intergenic 40.0%
TGCGTGTTATATGAGTTACC+TGG + chr6_2:2543006-2543025 Msa0904750:intron 40.0%
GCGTGTTATATGAGTTACCT+GGG + chr6_2:2543007-2543026 Msa0904750:intron 40.0%
CTAGCATAAGTACACAACCT+TGG - chr6_2:2543307-2543326 None:intergenic 40.0%
! GCATGATGAGTTATGGGTTT+TGG - chr6_2:2543901-2543920 None:intergenic 40.0%
ACATGCCACTAAGTTTAGTG+TGG + chr6_2:2543936-2543955 Msa0904750:intron 40.0%
AGTCTCCACACTAAACTTAG+TGG - chr6_2:2543944-2543963 None:intergenic 40.0%
ACTAAGTTTAGTGTGGAGAC+TGG + chr6_2:2543943-2543962 Msa0904750:intron 40.0%
TCGAATCTCCGCTATTTGTA+TGG + chr6_2:2544048-2544067 Msa0904750:intron 40.0%
TATTGTGAAGAATGTTGGCC+AGG + chr6_2:2544140-2544159 Msa0904750:CDS 40.0%
CGCATAGCAGAATGTAAACT+TGG - chr6_2:2544309-2544328 None:intergenic 40.0%
TCAATCTTCCGTAAGACAGA+AGG - chr6_2:2544366-2544385 None:intergenic 40.0%
ATCAGGCGTTAATTCCCTTA+GGG + chr6_2:2544425-2544444 Msa0904750:CDS 40.0%
AAGAGTTCTCTGTTGCTAGA+GGG - chr6_2:2544910-2544929 None:intergenic 40.0%
GATGTATTCTGACAGTGTGT+TGG + chr6_2:2544944-2544963 Msa0904750:intron 40.0%
TTAGACTCAACAGGAACTGT+TGG + chr6_2:2544996-2545015 Msa0904750:CDS 40.0%
AAGATCTTCCAACCCTACTT+GGG - chr6_2:2545067-2545086 None:intergenic 40.0%
CTATCAAGTCCAATTCTTGG+TGG - chr6_2:2545095-2545114 None:intergenic 40.0%
CACCAAGAATTGGACTTGAT+AGG + chr6_2:2545093-2545112 Msa0904750:CDS 40.0%
TGCCTATCAAGTCCAATTCT+TGG - chr6_2:2545098-2545117 None:intergenic 40.0%
TAGGCATATGCCCTCATATA+TGG + chr6_2:2545112-2545131 Msa0904750:CDS 40.0%
TAGCTGACAATTCTACTGGT+AGG + chr6_2:2545144-2545163 Msa0904750:CDS 40.0%
CCATAATCAACAGCATGATG+GGG - chr6_2:2545188-2545207 None:intergenic 40.0%
GCCATAATCAACAGCATGAT+GGG - chr6_2:2545189-2545208 None:intergenic 40.0%
TTCCGACTATCACCAGAAAA+CGG - chr6_2:2545263-2545282 None:intergenic 40.0%
TAGGCATCAATTAGTGCTCT+TGG - chr6_2:2545341-2545360 None:intergenic 40.0%
! AGAGCACTAATTGATGCCTA+TGG + chr6_2:2545341-2545360 Msa0904750:CDS 40.0%
!! TTGGCTTTTGTCACTACCAT+AGG - chr6_2:2545360-2545379 None:intergenic 40.0%
GACAAAAGCCAAGAAACTTC+TGG + chr6_2:2545368-2545387 Msa0904750:CDS 40.0%
GTAAGCCTTTGTTAGTTGAG+CGG + chr6_2:2545393-2545412 Msa0904750:CDS 40.0%
ATCATGGCAGAATACTGAAG+AGG + chr6_2:2545451-2545470 Msa0904750:CDS 40.0%
GTAGACCATGGTAGAAGTAA+TGG + chr6_2:2545509-2545528 Msa0904750:CDS 40.0%
GGAAACCATTACTTCTACCA+TGG - chr6_2:2545517-2545536 None:intergenic 40.0%
TGACACTGAAGAAGTTGCAT+TGG - chr6_2:2545588-2545607 None:intergenic 40.0%
ATGCAACTTCTTCAGTGTCA+AGG + chr6_2:2545588-2545607 Msa0904750:CDS 40.0%
TGCAACTTCTTCAGTGTCAA+GGG + chr6_2:2545589-2545608 Msa0904750:CDS 40.0%
AATATAGGAGTTATGCTGGG+AGG - chr6_2:2545710-2545729 None:intergenic 40.0%
TTCCATCGAAGAATCCTGTT+AGG + chr6_2:2545729-2545748 Msa0904750:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6_2:2545734-2545753 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6_2:2545746-2545765 None:intergenic 40.0%
GATTGTTCATGCACAGGAAA+AGG - chr6_2:2545815-2545834 None:intergenic 40.0%
GGTGGAAAAAACTGGAATGA+CGG - chr6_2:2545944-2545963 None:intergenic 40.0%
!!! ATTCCAGTTTTTTCCACCTC+AGG + chr6_2:2545946-2545965 Msa0904750:CDS 40.0%
TAAGTAAATTGTGACGCTGC+TGG - chr6_2:2545974-2545993 None:intergenic 40.0%
! AACTCTTTTCATTTCCAGGG+AGG + chr6_2:2546094-2546113 Msa0904750:CDS 40.0%
!! GGTACAAATGGACTAGGATT+GGG - chr6_2:2546178-2546197 None:intergenic 40.0%
!! TGGTACAAATGGACTAGGAT+TGG - chr6_2:2546179-2546198 None:intergenic 40.0%
AATATCCAACAGTTGGCTGT+TGG - chr6_2:2546204-2546223 None:intergenic 40.0%
ATTAATTCACTCATGGCCCA+AGG + chr6_2:2546232-2546251 Msa0904750:CDS 40.0%
AGCCAATGAGATTACACCTT+GGG - chr6_2:2546251-2546270 None:intergenic 40.0%
TAGCCAATGAGATTACACCT+TGG - chr6_2:2546252-2546271 None:intergenic 40.0%
AGATTTCGTTACCTGTGAAG+GGG - chr6_2:2546281-2546300 None:intergenic 40.0%
GCAAGCAAGTCAAAAATGGA+AGG - chr6_2:2546338-2546357 None:intergenic 40.0%
GTTCGCAAGCAAGTCAAAAA+TGG - chr6_2:2546342-2546361 None:intergenic 40.0%
GTTTGATCCAGATACTCTGA+AGG + chr6_2:2546407-2546426 Msa0904750:CDS 40.0%
TCTGCAATCAGTGCCTTATA+CGG + chr6_2:2546441-2546460 Msa0904750:CDS 40.0%
CTCACAAACCATTTACGAGA+GGG - chr6_2:2546585-2546604 None:intergenic 40.0%
ACTCACAAACCATTTACGAG+AGG - chr6_2:2546586-2546605 None:intergenic 40.0%
CAAAAAACCTGGAGCTGATT+CGG - chr6_2:2546646-2546665 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6_2:2546721-2546740 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6_2:2546767-2546786 Msa0904750:CDS 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6_2:2546810-2546829 Msa0904750:CDS 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6_2:2546832-2546851 Msa0904750:CDS 40.0%
CATCACAAAATCTTCAGACG+GGG - chr6_2:2546904-2546923 None:intergenic 40.0%
CCATCACAAAATCTTCAGAC+GGG - chr6_2:2546905-2546924 None:intergenic 40.0%
!!! GAAGATTTTGTGATGGACGA+AGG + chr6_2:2546909-2546928 Msa0904750:CDS 40.0%
!!! AGATTTTGTGATGGACGAAG+GGG + chr6_2:2546911-2546930 Msa0904750:CDS 40.0%
ATAACATGACTGCCGAATTC+TGG - chr6_2:2547209-2547228 None:intergenic 40.0%
! CGGCAGTCATGTTATTCTTT+TGG + chr6_2:2547214-2547233 Msa0904750:intron 40.0%
GCAAAACATGACATAGAAGG+CGG - chr6_2:2547328-2547347 None:intergenic 40.0%
TTGTTTCCCTCTTTCTATGC+AGG + chr6_2:2547524-2547543 Msa0904750:intron 40.0%
TGTTTCCCTCTTTCTATGCA+GGG + chr6_2:2547525-2547544 Msa0904750:intron 40.0%
TCTTTGACTGCCTTCTTCAT+AGG - chr6_2:2547553-2547572 None:intergenic 40.0%
GCAGTCAAAGAAAACGAATG+CGG + chr6_2:2547562-2547581 Msa0904750:CDS 40.0%
CCGAAACTCATAAGTTACAG+TGG - chr6_2:2547614-2547633 None:intergenic 40.0%
!! GCAGAATCTTCTGAAATACG+TGG + chr6_2:2547670-2547689 Msa0904750:three_prime_UTR 40.0%
!! TTTTGGGGACAGTAAAGGTA+AGG - chr6_2:2547793-2547812 None:intergenic 40.0%
GGATCCATGAGCATTTACAA+AGG + chr6_2:2547884-2547903 Msa0904750:three_prime_UTR 40.0%
GGATCCTTTGTAAATGCTCA+TGG - chr6_2:2547891-2547910 None:intergenic 40.0%
CAATCTCATTGCTCATGGTG+GGG - chr6_2:2541741-2541760 None:intergenic 45.0%
AATCGACCAACGAGGATTGA+TGG - chr6_2:2541778-2541797 None:intergenic 45.0%
! AATCCTCGTTGGTCGATTCA+AGG + chr6_2:2541780-2541799 Msa0904750:CDS 45.0%
AACGTCGTGAAGAAGATCCT+CGG + chr6_2:2541815-2541834 Msa0904750:CDS 45.0%
! AAATACCGGCTATAGCGTAG+CGG + chr6_2:2542403-2542422 Msa0904750:intron 45.0%
AAATTCCGCTACGCTATAGC+CGG - chr6_2:2542411-2542430 None:intergenic 45.0%
! CTATGCTACAGTGCTGCTAT+AGG - chr6_2:2542499-2542518 None:intergenic 45.0%
ATAGCAGCACTGTAGCATAG+AGG + chr6_2:2542499-2542518 Msa0904750:intron 45.0%
ACAACCATGTTGTACTGCCT+TGG + chr6_2:2542789-2542808 Msa0904750:intron 45.0%
GTGTTGTCAAATTGCCACCA+AGG - chr6_2:2542809-2542828 None:intergenic 45.0%
! TTTTGGCAACCTGCTCAAGT+TGG + chr6_2:2542927-2542946 Msa0904750:intron 45.0%
CTACAAGCAACCTAAAACCC+AGG - chr6_2:2543027-2543046 None:intergenic 45.0%
! CTAGAAGATTGTTGGGTTGC+TGG + chr6_2:2543323-2543342 Msa0904750:intron 45.0%
GTCAACATTGGCAATCTCAG+AGG + chr6_2:2543609-2543628 Msa0904750:intron 45.0%
AAGTTTAGTGTGGAGACTGG+AGG + chr6_2:2543946-2543965 Msa0904750:intron 45.0%
GCTTCCTTCACTCTATCTCT+TGG + chr6_2:2544113-2544132 Msa0904750:CDS 45.0%
CTGTCCAAGAGATAGAGTGA+AGG - chr6_2:2544120-2544139 None:intergenic 45.0%
TCTGCTATGCGACATCTCTT+TGG + chr6_2:2544318-2544337 Msa0904750:CDS 45.0%
TCTTCCCTCCTTCTGTCTTA+CGG + chr6_2:2544355-2544374 Msa0904750:CDS 45.0%
TCTTCCGTAAGACAGAAGGA+GGG - chr6_2:2544362-2544381 None:intergenic 45.0%
ATCTTCCGTAAGACAGAAGG+AGG - chr6_2:2544363-2544382 None:intergenic 45.0%
TGTCTTACGGAAGATTGACG+TGG + chr6_2:2544368-2544387 Msa0904750:CDS 45.0%
CTAAGGGAATTAACGCCTGA+TGG - chr6_2:2544426-2544445 None:intergenic 45.0%
CATCAGGCGTTAATTCCCTT+AGG + chr6_2:2544424-2544443 Msa0904750:CDS 45.0%
AGGAGATTCAGAAGCCCTAA+GGG - chr6_2:2544442-2544461 None:intergenic 45.0%
AATCTCCTCGACCAACTCAT+GGG + chr6_2:2544454-2544473 Msa0904750:CDS 45.0%
CAAGAGTTCTCTGTTGCTAG+AGG - chr6_2:2544911-2544930 None:intergenic 45.0%
!! TGTGTTGGTTTCATCCTCAC+AGG + chr6_2:2544959-2544978 Msa0904750:intron 45.0%
GGTGAAAGGTTAGACTCAAC+AGG + chr6_2:2544987-2545006 Msa0904750:CDS 45.0%
CAATTTGTCCCAAGTAGGGT+TGG + chr6_2:2545056-2545075 Msa0904750:CDS 45.0%
GAAGATCTTCCAACCCTACT+TGG - chr6_2:2545068-2545087 None:intergenic 45.0%
TCTTCGTCACCACCAAGAAT+TGG + chr6_2:2545083-2545102 Msa0904750:CDS 45.0%
! CCCCATCATGCTGTTGATTA+TGG + chr6_2:2545185-2545204 Msa0904750:CDS 45.0%
GGCCATAATCAACAGCATGA+TGG - chr6_2:2545190-2545209 None:intergenic 45.0%
GAGAAGAAGAGTTGAGTGAG+TGG + chr6_2:2545228-2545247 Msa0904750:CDS 45.0%
!! AGCCGTTTTCTGGTGATAGT+CGG + chr6_2:2545258-2545277 Msa0904750:CDS 45.0%
!! AGTGCTCTTGGATTTTGACG+TGG - chr6_2:2545329-2545348 None:intergenic 45.0%
GCTTACTGCCAGAAGTTTCT+TGG - chr6_2:2545379-2545398 None:intergenic 45.0%
ATGGCAGAATACTGAAGAGG+AGG + chr6_2:2545454-2545473 Msa0904750:CDS 45.0%
TGAAGAGGAGGAGTTCGATT+GGG + chr6_2:2545466-2545485 Msa0904750:CDS 45.0%
GGTTTCCTGCAACCAACTAT+CGG + chr6_2:2545530-2545549 Msa0904750:CDS 45.0%
TCAAAAGCTGCAGGCAAAAC+TGG - chr6_2:2545653-2545672 None:intergenic 45.0%
!!! TGCCTGCAGCTTTTGAAATG+AGG + chr6_2:2545657-2545676 Msa0904750:CDS 45.0%
TGCCTCATTTCAAAAGCTGC+AGG - chr6_2:2545662-2545681 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6_2:2545687-2545706 None:intergenic 45.0%
TGCAACGATTGTTCATGCAC+AGG - chr6_2:2545821-2545840 None:intergenic 45.0%
GTGCATGAACAATCGTTGCA+CGG + chr6_2:2545821-2545840 Msa0904750:CDS 45.0%
GCTGATTAGGTAGCTGATAC+AGG - chr6_2:2545877-2545896 None:intergenic 45.0%
ATCAGACCAGGAAGCTGATT+AGG - chr6_2:2545890-2545909 None:intergenic 45.0%
GGGTTAGATGAAATCAGACC+AGG - chr6_2:2545902-2545921 None:intergenic 45.0%
GTGTTTGTACACTGTTTGGC+GGG - chr6_2:2545922-2545941 None:intergenic 45.0%
GGTGTTTGTACACTGTTTGG+CGG - chr6_2:2545923-2545942 None:intergenic 45.0%
GACGGTGTTTGTACACTGTT+TGG - chr6_2:2545926-2545945 None:intergenic 45.0%
GATCCTGAGGTGGAAAAAAC+TGG - chr6_2:2545952-2545971 None:intergenic 45.0%
ACTTATAGGCCATCTTTGCC+AGG + chr6_2:2545989-2546008 Msa0904750:CDS 45.0%
AACAGGTCGTACATTTGGCA+GGG - chr6_2:2546038-2546057 None:intergenic 45.0%
TAACAGGTCGTACATTTGGC+AGG - chr6_2:2546039-2546058 None:intergenic 45.0%
GGCATAACAGGTCGTACATT+TGG - chr6_2:2546043-2546062 None:intergenic 45.0%
TTGTTTCCGATTCTTTGGCC+TGG - chr6_2:2546076-2546095 None:intergenic 45.0%
!! AATGGACTAGGATTGGGATG+AGG - chr6_2:2546172-2546191 None:intergenic 45.0%
!! TGGCTTGGTACAAATGGACT+AGG - chr6_2:2546184-2546203 None:intergenic 45.0%
! TGACGAACCTTCAGAGTATC+TGG - chr6_2:2546417-2546436 None:intergenic 45.0%
GCTCGTCTTGGGATTTGAAT+CGG - chr6_2:2546500-2546519 None:intergenic 45.0%
GTCTCAGTTGGCAAAAAACC+TGG - chr6_2:2546657-2546676 None:intergenic 45.0%
! TTTTCCTCAGTGGTCTCAGT+TGG - chr6_2:2546669-2546688 None:intergenic 45.0%
TGATGAAGAGTTGGCTGTTC+CGG + chr6_2:2546695-2546714 Msa0904750:CDS 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6_2:2546822-2546841 Msa0904750:CDS 45.0%
! CCCGTCTGAAGATTTTGTGA+TGG + chr6_2:2546902-2546921 Msa0904750:CDS 45.0%
AAACATGACATAGAAGGCGG+CGG - chr6_2:2547325-2547344 None:intergenic 45.0%
ATAGATTGCAACACTAGGCG+TGG + chr6_2:2547371-2547390 Msa0904750:intron 45.0%
TGCTCGAAAAACATCAGCAC+TGG - chr6_2:2547488-2547507 None:intergenic 45.0%
TGGGATGGAGCAGTAATTAC+TGG + chr6_2:2547849-2547868 Msa0904750:three_prime_UTR 45.0%
GGGATGGAGCAGTAATTACT+GGG + chr6_2:2547850-2547869 Msa0904750:three_prime_UTR 45.0%
GGATGGAGCAGTAATTACTG+GGG + chr6_2:2547851-2547870 Msa0904750:three_prime_UTR 45.0%
AGCAGTAATTACTGGGGACA+TGG + chr6_2:2547857-2547876 Msa0904750:three_prime_UTR 45.0%
AATTACTGGGGACATGGCAA+AGG + chr6_2:2547863-2547882 Msa0904750:three_prime_UTR 45.0%
!!! ATAATATATCTAATTTTTAA+AGG + chr6_2:2542839-2542858 Msa0904750:intron 5.0%
!! ATTTAAAAAAAAAAAAACTT+AGG - chr6_2:2546306-2546325 None:intergenic 5.0%
AAGCCTTGAATCGACCAACG+AGG - chr6_2:2541786-2541805 None:intergenic 50.0%
GGTTGCGAATTTCTCAACCG+AGG - chr6_2:2541835-2541854 None:intergenic 50.0%
TCACAAATCGCGGAAAACGG+TGG - chr6_2:2542537-2542556 None:intergenic 50.0%
ATGGGGTTTATGGCCTATGG+TGG + chr6_2:2542726-2542745 Msa0904750:intron 50.0%
ACCATGTTGTACTGCCTTGG+TGG + chr6_2:2542792-2542811 Msa0904750:intron 50.0%
! GATAAGTGGTGATGAGGCCT+GGG - chr6_2:2543485-2543504 None:intergenic 50.0%
! TGATAAGTGGTGATGAGGCC+TGG - chr6_2:2543486-2543505 None:intergenic 50.0%
TAACCTACTTCGGGTAGACG+CGG - chr6_2:2544186-2544205 None:intergenic 50.0%
GTATGCCACGCAGAAAACCT+AGG - chr6_2:2544274-2544293 None:intergenic 50.0%
TGCGACATCTCTTTGGTACC+TGG + chr6_2:2544325-2544344 Msa0904750:CDS 50.0%
! AGGAGGGAAGACTTTTGACC+AGG - chr6_2:2544346-2544365 None:intergenic 50.0%
GAGGAGATTCAGAAGCCCTA+AGG - chr6_2:2544443-2544462 None:intergenic 50.0%
GAATCTCCTCGACCAACTCA+TGG + chr6_2:2544453-2544472 Msa0904750:CDS 50.0%
!! TGTATCCCATGAGTTGGTCG+AGG - chr6_2:2544462-2544481 None:intergenic 50.0%
GTTTCATCCTCACAGGTTGC+AGG + chr6_2:2544966-2544985 Msa0904750:intron 50.0%
GACGTGGTTGTCCGTTACTA+AGG - chr6_2:2545313-2545332 None:intergenic 50.0%
TCCAGCCGCTCAACTAACAA+AGG - chr6_2:2545401-2545420 None:intergenic 50.0%
GTTGAGCGGCTGGATAGAAA+TGG + chr6_2:2545407-2545426 Msa0904750:CDS 50.0%
GCGGCTGGATAGAAATGGTA+TGG + chr6_2:2545412-2545431 Msa0904750:CDS 50.0%
CTGAAGAGGAGGAGTTCGAT+TGG + chr6_2:2545465-2545484 Msa0904750:CDS 50.0%
AGTCCTGCAGTAGTAGACCA+TGG + chr6_2:2545497-2545516 Msa0904750:CDS 50.0%
CTACCATGGTCTACTACTGC+AGG - chr6_2:2545503-2545522 None:intergenic 50.0%
!! GCATTGGCTGCAACAGTAAC+AGG - chr6_2:2545572-2545591 None:intergenic 50.0%
!! TCAGTGTCAAGGGTGTTTCC+TGG + chr6_2:2545599-2545618 Msa0904750:CDS 50.0%
AAAGCTGCAGGCAAAACTGG+TGG - chr6_2:2545650-2545669 None:intergenic 50.0%
CAGCTACCTAATCAGCTTCC+TGG + chr6_2:2545881-2545900 Msa0904750:CDS 50.0%
ACAGGTCGTACATTTGGCAG+GGG - chr6_2:2546037-2546056 None:intergenic 50.0%
CGATTCTTTGGCCTGGCAAA+GGG - chr6_2:2546069-2546088 None:intergenic 50.0%
CCTTTGCCAGGCCAAAGAAT+CGG + chr6_2:2546067-2546086 Msa0904750:CDS 50.0%
ATTGGGATGAGGTGGCATCT+GGG - chr6_2:2546161-2546180 None:intergenic 50.0%
!! GGCTGTTGGCTTGGTACAAA+TGG - chr6_2:2546190-2546209 None:intergenic 50.0%
GGCCCAAGGTGTAATCTCAT+TGG + chr6_2:2546246-2546265 Msa0904750:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6_2:2546474-2546493 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6_2:2546471-2546490 Msa0904750:CDS 50.0%
CGTCTTGGGATTTGAATCGG+AGG - chr6_2:2546497-2546516 None:intergenic 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6_2:2546517-2546536 Msa0904750:CDS 50.0%
TACGAGAGGGCTTCTGCTTA+CGG - chr6_2:2546572-2546591 None:intergenic 50.0%
AGCAGAAGCCCTCTCGTAAA+TGG + chr6_2:2546574-2546593 Msa0904750:CDS 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6_2:2546595-2546614 Msa0904750:CDS 50.0%
AGTGAGACGATGTGGCTTAG+TGG + chr6_2:2546603-2546622 Msa0904750:CDS 50.0%
!! CTTAGTGGTGCAGAGGCATT+GGG + chr6_2:2546618-2546637 Msa0904750:CDS 50.0%
TTTGCCAACTGAGACCACTG+AGG + chr6_2:2546662-2546681 Msa0904750:CDS 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6_2:2546772-2546791 Msa0904750:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6_2:2546783-2546802 Msa0904750:CDS 50.0%
GGCATAGACAGGTCACAGTT+AGG + chr6_2:2546843-2546862 Msa0904750:CDS 50.0%
TGCGGGAGAGATCCAGAATT+CGG + chr6_2:2547194-2547213 Msa0904750:intron 50.0%
AGGTGCCCTGCATAGAAAGA+GGG - chr6_2:2547533-2547552 None:intergenic 50.0%
TAGGTGCCCTGCATAGAAAG+AGG - chr6_2:2547534-2547553 None:intergenic 50.0%
! ATGCAGGGCACCTATGAAGA+AGG + chr6_2:2547540-2547559 Msa0904750:intron 50.0%
!! CCAACGAGGATTGATGGTGG+AGG - chr6_2:2541772-2541791 None:intergenic 55.0%
CCTCCACCATCAATCCTCGT+TGG + chr6_2:2541769-2541788 Msa0904750:CDS 55.0%
CGACCAACGAGGATTGATGG+TGG - chr6_2:2541775-2541794 None:intergenic 55.0%
GCCACCAAGGCAGTACAACA+TGG - chr6_2:2542796-2542815 None:intergenic 55.0%
! GTCTGCCTAGGTTTTCTGCG+TGG + chr6_2:2544266-2544285 Msa0904750:intron 55.0%
CCTTTCACCTGCAACCTGTG+AGG - chr6_2:2544976-2544995 None:intergenic 55.0%
CCTCACAGGTTGCAGGTGAA+AGG + chr6_2:2544973-2544992 Msa0904750:intron 55.0%
!! TGGTCGCGAAAGCCGTTTTC+TGG + chr6_2:2545248-2545267 Msa0904750:CDS 55.0%
GCCTTTGTTAGTTGAGCGGC+TGG + chr6_2:2545397-2545416 Msa0904750:CDS 55.0%
CTGCAGGCAAAACTGGTGGA+CGG - chr6_2:2545646-2545665 None:intergenic 55.0%
AGGCCATCTTTGCCAGGACA+TGG + chr6_2:2545995-2546014 Msa0904750:CDS 55.0%
GGACCATGTCCTGGCAAAGA+TGG - chr6_2:2546001-2546020 None:intergenic 55.0%
CTCATAGCAGGACCATGTCC+TGG - chr6_2:2546010-2546029 None:intergenic 55.0%
CAGGTCGTACATTTGGCAGG+GGG - chr6_2:2546036-2546055 None:intergenic 55.0%
GGCAAAGGGAGTGGCATAAC+AGG - chr6_2:2546055-2546074 None:intergenic 55.0%
GTTATGCCACTCCCTTTGCC+AGG + chr6_2:2546055-2546074 Msa0904750:CDS 55.0%
CCGATTCTTTGGCCTGGCAA+AGG - chr6_2:2546070-2546089 None:intergenic 55.0%
TTGCGACCTTTACCTCCACC+TGG + chr6_2:2546121-2546140 Msa0904750:CDS 55.0%
GATTGGGATGAGGTGGCATC+TGG - chr6_2:2546162-2546181 None:intergenic 55.0%
GGACTAGGATTGGGATGAGG+TGG - chr6_2:2546169-2546188 None:intergenic 55.0%
! CCAACAGTTGGCTGTTGGCT+TGG - chr6_2:2546199-2546218 None:intergenic 55.0%
CCAAGCCAACAGCCAACTGT+TGG + chr6_2:2546196-2546215 Msa0904750:CDS 55.0%
GGCTAATCAAGCCCCTTCAC+AGG + chr6_2:2546267-2546286 Msa0904750:CDS 55.0%
GTGACTGCTGTGCTCGTCTT+GGG - chr6_2:2546511-2546530 None:intergenic 55.0%
TGTGACTGCTGTGCTCGTCT+TGG - chr6_2:2546512-2546531 None:intergenic 55.0%
AGACGAGCACAGCAGTCACA+TGG + chr6_2:2546512-2546531 Msa0904750:CDS 55.0%
GATGTGGCTTAGTGGTGCAG+AGG + chr6_2:2546611-2546630 Msa0904750:CDS 55.0%
! GCTTAGTGGTGCAGAGGCAT+TGG + chr6_2:2546617-2546636 Msa0904750:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6_2:2546717-2546736 None:intergenic 55.0%
ACCAGTTCGCGTTCTCTCCC+AGG + chr6_2:2543465-2543484 Msa0904750:intron 60.0%
TCACCGCGTCTACCCGAAGT+AGG + chr6_2:2544180-2544199 Msa0904750:intron 60.0%
GGAGTTATGCTGGGAGGACG+TGG - chr6_2:2545704-2545723 None:intergenic 60.0%
TGTGACGCTGCTGGATCCTG+AGG - chr6_2:2545965-2545984 None:intergenic 60.0%
GGCAGGGGGTTACTCATAGC+AGG - chr6_2:2546022-2546041 None:intergenic 60.0%
CTTTGGCCTGGCAAAGGGAG+TGG - chr6_2:2546064-2546083 None:intergenic 60.0%
AAGGTCGCAAAGCTCCTCCC+TGG - chr6_2:2546111-2546130 None:intergenic 60.0%
TGTGGGCCAGGTGGAGGTAA+AGG - chr6_2:2546130-2546149 None:intergenic 60.0%
! GCATCTGGGATGGAGCGTGT+GGG - chr6_2:2546147-2546166 None:intergenic 60.0%
GGATGAGGTGGCATCTGGGA+TGG - chr6_2:2546157-2546176 None:intergenic 60.0%
TTGGGAGCCGAATCAGCTCC+AGG + chr6_2:2546636-2546655 Msa0904750:CDS 60.0%
GCCTGGGAGAGAACGCGAAC+TGG - chr6_2:2543469-2543488 None:intergenic 65.0%
GACGCTGCTGGATCCTGAGG+TGG - chr6_2:2545962-2545981 None:intergenic 65.0%
! GGCATCTGGGATGGAGCGTG+TGG - chr6_2:2546148-2546167 None:intergenic 65.0%
GATGGAGCGTGTGGGCCAGG+TGG - chr6_2:2546139-2546158 None:intergenic 70.0%
TGGGATGGAGCGTGTGGGCC+AGG - chr6_2:2546142-2546161 None:intergenic 70.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6_2:2546704-2546723 Msa0904750:CDS 70.0%
GGAGCGTGTGGGCCAGGTGG+AGG - chr6_2:2546136-2546155 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 2541555 2547983 2541555 ID=Msa0904750;Name=Msa0904750
chr6_2 mRNA 2541555 2547983 2541555 ID=Msa0904750-mRNA-1;Parent=Msa0904750;Name=Msa0904750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190|1|1|1|1|1|6|393|840
chr6_2 exon 2541555 2542008 2541555 ID=Msa0904750-mRNA-1:exon:828;Parent=Msa0904750-mRNA-1
chr6_2 exon 2544096 2544197 2544096 ID=Msa0904750-mRNA-1:exon:829;Parent=Msa0904750-mRNA-1
chr6_2 exon 2544276 2544536 2544276 ID=Msa0904750-mRNA-1:exon:830;Parent=Msa0904750-mRNA-1
chr6_2 exon 2544981 2546288 2544981 ID=Msa0904750-mRNA-1:exon:831;Parent=Msa0904750-mRNA-1
chr6_2 exon 2546390 2546932 2546390 ID=Msa0904750-mRNA-1:exon:832;Parent=Msa0904750-mRNA-1
chr6_2 exon 2547546 2547983 2547546 ID=Msa0904750-mRNA-1:exon:833;Parent=Msa0904750-mRNA-1
chr6_2 five_prime_UTR 2541555 2541744 2541555 ID=Msa0904750-mRNA-1:five_prime_utr;Parent=Msa0904750-mRNA-1
chr6_2 CDS 2541745 2542008 2541745 ID=Msa0904750-mRNA-1:cds;Parent=Msa0904750-mRNA-1
chr6_2 CDS 2544096 2544197 2544096 ID=Msa0904750-mRNA-1:cds;Parent=Msa0904750-mRNA-1
chr6_2 CDS 2544276 2544536 2544276 ID=Msa0904750-mRNA-1:cds;Parent=Msa0904750-mRNA-1
chr6_2 CDS 2544981 2546288 2544981 ID=Msa0904750-mRNA-1:cds;Parent=Msa0904750-mRNA-1
chr6_2 CDS 2546390 2546932 2546390 ID=Msa0904750-mRNA-1:cds;Parent=Msa0904750-mRNA-1
chr6_2 CDS 2547546 2547590 2547546 ID=Msa0904750-mRNA-1:cds;Parent=Msa0904750-mRNA-1
chr6_2 three_prime_UTR 2547591 2547983 2547591 ID=Msa0904750-mRNA-1:three_prime_utr;Parent=Msa0904750-mRNA-1
Gene Sequence

>Msa0904750

ATGAGCAATGAGATTGTTCAAAAGCCTCCACCATCAATCCTCGTTGGTCGATTCAAGGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTCGGTTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCACCGCGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATCCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCTTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTCGGTCTTCTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCTTCGTCACCACCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATTTAGCTGACAATTCTACTGGTAGGACAGTTGAGAGAGAATCTCCCCATCATGCTGTTGATTATGGCCTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGTCGCGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGACAACCACGTCAAAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCTGCAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATCGGTTTCTCATCAGAAAAGCCTGTTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCACCAGTTTTGCCTGCAGCTTTTGAAATGAGGCACTCCGTAAATGTGCATGCTCCACGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCCAATAGTACCATTGTGAGTCATGGTCTAATTAATAGACCTTTTCCTGTGCATGAACAATCGTTGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCAGCGTCACAATTTACTTATAGGCCATCTTTGCCAGGACATGGTCCTGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGAGGAGCTTTGCGACCTTTACCTCCACCTGGCCCACACGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGATACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCCGAATCAGCTCCAGGTTTTTTGCCAACTGAGACCACTGAGGAAAAGAAAGATGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAAATCTGAATCTACCCCGTCTGAAGATTTTGTGATGGACGAAGGGGGCACCTATGAAGAAGGCAGTCAAAGAAAACGAATGCGGAGCTGA
Protein sequence

>Msa0904750

MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSPRLPEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTVGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEELSEWSRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPAVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRPPVLPAAFEMRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVSHGLINRPFPVHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHAPSQMPPHPNPSPFVPSQQPTVGYSNLINSLMAQGVISLANQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKDDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPIIHAKCKSESTPSEDFVMDEGGTYEEGSQRKRMRS*