AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0974100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974100 MtrunA17_Chr6g0452881 98.452 840 13 0 1 840 1 840 0.0 1709
Msa0974100 MtrunA17_Chr6g0452891 73.469 245 37 3 569 813 1 217 9.39e-120 360
Msa0974100 MtrunA17_Chr4g0037071 89.286 196 21 0 631 826 1 196 2.64e-113 345
Msa0974100 MtrunA17_Chr4g0037081 77.976 168 34 1 295 462 15 179 1.18e-80 257
Msa0974100 MtrunA17_Chr7g0265781 37.978 366 172 11 37 388 78 402 2.09e-60 222
Msa0974100 MtrunA17_Chr7g0265781 37.356 174 105 3 645 816 847 1018 2.58e-33 138
Msa0974100 MtrunA17_Chr1g0179281 37.534 365 186 11 40 394 80 412 4.55e-57 212
Msa0974100 MtrunA17_Chr1g0179281 36.207 174 105 4 645 814 838 1009 2.28e-31 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974100 AT4G04885.1 45.455 869 363 20 1 840 22 808 0.0 635
Msa0974100 AT2G36480.2 35.754 358 180 10 41 379 88 414 4.65e-50 191
Msa0974100 AT2G36480.2 33.140 172 106 3 645 816 785 947 1.78e-25 114
Msa0974100 AT2G36480.1 35.754 358 180 10 41 379 88 414 4.65e-50 191
Msa0974100 AT2G36480.1 33.140 172 106 3 645 816 785 947 1.78e-25 114
Msa0974100 AT1G66500.1 35.326 368 157 16 496 821 68 396 8.46e-50 181
Msa0974100 AT5G43620.1 36.770 291 124 11 568 821 123 390 1.18e-45 169

Find 256 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTTAGGGTTCTGAATT+TGG 0.136419 6_4:-6971580 None:intergenic
GTTGATTATGGCCTAGTTAA+AGG 0.199059 6_4:+6975098 Msa0974100:CDS
GGAAAATTGAGAGAGAAATT+AGG 0.204170 6_4:-6971599 None:intergenic
CACATAATGCACATGTATTT+TGG 0.204278 6_4:-6976628 None:intergenic
TCTATTTGTCTTACGTATCT+TGG 0.237116 6_4:-6974391 None:intergenic
CATCAATGCACCATTTATAT+TGG 0.241138 6_4:-6977841 None:intergenic
CGGCGTCACAATTTACTTAT+AGG 0.255733 6_4:+6975876 Msa0974100:CDS
AGGGTTAGGGTTCTGAATTT+GGG 0.264343 6_4:-6971579 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.278868 6_4:-6975979 None:intergenic
CCCCATCATGCTGTTGATTA+TGG 0.284990 6_4:+6975086 Msa0974100:CDS
AGCAGAAGCCCTCTCGTAAA+TGG 0.298225 6_4:+6976474 Msa0974100:CDS
TCAGTGTCAAGGGTGTTTCC+TGG 0.301890 6_4:+6975500 Msa0974100:CDS
GCTTACTGCCAGAAGTTTCT+TGG 0.305569 6_4:-6975277 None:intergenic
CCTATACATGTACATAATTT+AGG 0.307610 6_4:-6977601 None:intergenic
CCTGATGGTTGATTATTAAC+TGG 0.309564 6_4:-6974310 None:intergenic
TAGGCATATGCCCTCATATA+TGG 0.310130 6_4:+6975013 Msa0974100:CDS
GAAAATTGAGAGAGAAATTA+GGG 0.313585 6_4:-6971598 None:intergenic
GCATTGGCTGCAACAGTAAC+AGG 0.313592 6_4:-6975470 None:intergenic
TCTTTGACTGCCTTCTTCAT+AGG 0.318589 6_4:-6977450 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6_4:-6976725 None:intergenic
GGGGTGTGAAATTGAGAAAT+TGG 0.329039 6_4:-6971621 None:intergenic
GATTGGGATGAGGTGGCATC+TGG 0.331410 6_4:-6976060 None:intergenic
TGAACAATTTCTTCTGTTGA+AGG 0.331657 6_4:-6971755 None:intergenic
GATTCGAATGGATTCCTAAC+AGG 0.333615 6_4:-6975644 None:intergenic
CTGCATTTAGCATGAATAAT+GGG 0.336904 6_4:-6976767 None:intergenic
TGGGATGGAGCAGTAATTAC+TGG 0.337629 6_4:+6977750 Msa0974100:three_prime_UTR
TGATGAAGAGTTGGCTGTTC+CGG 0.339955 6_4:+6976595 Msa0974100:CDS
TCAAAAGCTGCAGGCAAAAC+TGG 0.340119 6_4:-6975551 None:intergenic
TGACGAACCTTCAGAGTATC+TGG 0.351247 6_4:-6976314 None:intergenic
CCACTGTAACTTATGAGTTT+CGG 0.352733 6_4:+6977511 Msa0974100:three_prime_UTR
TCTAGGAAGATTACCGTATA+AGG 0.356434 6_4:-6976354 None:intergenic
TCTGCTATGCGACATCTCTT+TGG 0.357635 6_4:+6974220 Msa0974100:CDS
TTATTCCATTAGGCGCATTA+AGG 0.358655 6_4:-6976715 None:intergenic
TTGAGAGAGAAATTAGGGTT+AGG 0.360280 6_4:-6971593 None:intergenic
CCTAAATTATGTACATGTAT+AGG 0.366794 6_4:+6977601 Msa0974100:three_prime_UTR
TATGGCCTAGTTAAAGGATT+AGG 0.367937 6_4:+6975104 Msa0974100:CDS
TCTGCATTTAGCATGAATAA+TGG 0.369592 6_4:-6976768 None:intergenic
TGCCTATCAAGTCCAATTCT+TGG 0.377024 6_4:-6974996 None:intergenic
CTATTTGTCTTACGTATCTT+GGG 0.379077 6_4:-6974390 None:intergenic
TGAGAGAGAAATTAGGGTTA+GGG 0.380815 6_4:-6971592 None:intergenic
GTTTCATCCTCACAGGTTGC+AGG 0.381654 6_4:+6974867 Msa0974100:intron
TGGGATGGAGCGTGTGGGCC+AGG 0.382563 6_4:-6976040 None:intergenic
TACGAGAGGGCTTCTGCTTA+CGG 0.385096 6_4:-6976469 None:intergenic
GTAAGGAACTGAAAATTTGC+AGG 0.385387 6_4:-6977674 None:intergenic
TAGGCATCAATTAGTGCTCT+TGG 0.388516 6_4:-6975239 None:intergenic
ATGACTCACAATGGTACTAT+TGG 0.398029 6_4:-6975675 None:intergenic
TCTTCGTCACCACCAAGAAT+TGG 0.400029 6_4:+6974984 Msa0974100:CDS
GGCTGTTGGCTTGGTACAAA+TGG 0.400747 6_4:-6976088 None:intergenic
GGCATAACAGGTCGTACATT+TGG 0.402384 6_4:-6975941 None:intergenic
CAGCTACCTAATCAGCTTCC+TGG 0.402588 6_4:+6975782 Msa0974100:CDS
TCTGCAATCAGTGCCTTATA+CGG 0.402883 6_4:+6976341 Msa0974100:CDS
ACGTGGAGCATGCACATTTA+CGG 0.404948 6_4:-6975585 None:intergenic
GCTGATTAGGTAGCTGATAC+AGG 0.407419 6_4:-6975775 None:intergenic
GTGACTGCTGTGCTCGTCTT+GGG 0.407489 6_4:-6976408 None:intergenic
CGATTCTTTGGCCTGGCAAA+GGG 0.408289 6_4:-6975967 None:intergenic
AGAAACCGATAGTTGGTTGC+AGG 0.410939 6_4:-6975436 None:intergenic
CGCATAGCAGAATGTAAACT+TGG 0.411538 6_4:-6974208 None:intergenic
ATTGTTGTATCCAATATAAA+TGG 0.413298 6_4:+6977831 Msa0974100:three_prime_UTR
TAAATATTCATCCATATATG+AGG 0.415257 6_4:-6975024 None:intergenic
GACAAAAGCCAAGAAACTTC+TGG 0.416293 6_4:+6975269 Msa0974100:CDS
GAAGATCTTCCAACCCTACT+TGG 0.416371 6_4:-6974966 None:intergenic
GGAGCGTGTGGGCCAGGTGG+AGG 0.420614 6_4:-6976034 None:intergenic
GGCAAAGGGAGTGGCATAAC+AGG 0.420754 6_4:-6975953 None:intergenic
GACGGTGTTTGTACACTGTT+TGG 0.421276 6_4:-6975824 None:intergenic
AGAAGTATCGAACATATTCC+TGG 0.424947 6_4:-6974060 None:intergenic
TGTGACTGCTGTGCTCGTCT+TGG 0.427292 6_4:-6976409 None:intergenic
GGATTCTTCGATGGAAATAT+AGG 0.431337 6_4:-6975623 None:intergenic
CTTAGTGGTGCAGAGGCATT+GGG 0.433928 6_4:+6976518 Msa0974100:CDS
GACGTGGTTGTCCGTTACTA+AGG 0.434804 6_4:-6975211 None:intergenic
ATCAGACCAGGAAGCTGATT+AGG 0.435569 6_4:-6975788 None:intergenic
GCTTCCTTCACTCTATCTCT+TGG 0.436037 6_4:+6974015 Msa0974100:CDS
GTATACCTTAATGCGCCTAA+TGG 0.441302 6_4:+6976710 Msa0974100:CDS
CCGATTCTTTGGCCTGGCAA+AGG 0.444884 6_4:-6975968 None:intergenic
CATCAGGCGTTAATTCCCTT+AGG 0.446704 6_4:+6974326 Msa0974100:CDS
AATCCTCGTTGGTCGATTCA+AGG 0.447934 6_4:+6971682 Msa0974100:CDS
GCCATAATCAACAGCATGAT+GGG 0.449248 6_4:-6975087 None:intergenic
GCTTAGTGGTGCAGAGGCAT+TGG 0.449928 6_4:+6976517 Msa0974100:CDS
ACTGTTGGAAATGCAAATTT+CGG 0.451845 6_4:+6974912 Msa0974100:CDS
AATCGACCAACGAGGATTGA+TGG 0.453327 6_4:-6971677 None:intergenic
TATAGTTTATTGCAGTCAAA+AGG 0.456065 6_4:+6977641 Msa0974100:three_prime_UTR
GCTCGTCTTGGGATTTGAAT+CGG 0.457134 6_4:-6976397 None:intergenic
GCCTTTGTTAGTTGAGCGGC+TGG 0.457470 6_4:+6975298 Msa0974100:CDS
AGCCAATGAGATTACACCTT+GGG 0.459714 6_4:-6976149 None:intergenic
TGGAAATATAGGAGTTATGC+TGG 0.461860 6_4:-6975612 None:intergenic
TAACAGGTCGTACATTTGGC+AGG 0.462054 6_4:-6975937 None:intergenic
TCTTCCCTCCTTCTGTCTTA+CGG 0.462978 6_4:+6974257 Msa0974100:CDS
TTGGGAGCCGAATCAGCTCC+AGG 0.463136 6_4:+6976536 Msa0974100:CDS
TTCCATCGAAGAATCCTGTT+AGG 0.463431 6_4:+6975630 Msa0974100:CDS
GGGTGTGAAATTGAGAAATT+GGG 0.466361 6_4:-6971620 None:intergenic
CCAACAGTTGGCTGTTGGCT+TGG 0.468279 6_4:-6976097 None:intergenic
AAAGAAAGATGATGAAGAGT+TGG 0.468658 6_4:+6976586 Msa0974100:CDS
GATTGTTCATGCACAGGAAA+AGG 0.472985 6_4:-6975713 None:intergenic
GTTATGCCACTCCCTTTGCC+AGG 0.474289 6_4:+6975956 Msa0974100:CDS
GAATCTCCTCGACCAACTCA+TGG 0.475030 6_4:+6974355 Msa0974100:CDS
TGTGGGCCAGGTGGAGGTAA+AGG 0.475834 6_4:-6976028 None:intergenic
CTTTGGCCTGGCAAAGGGAG+TGG 0.476898 6_4:-6975962 None:intergenic
CTCTACCTAATCCTTTAACT+AGG 0.477129 6_4:-6975109 None:intergenic
TGGTACAAATGGACTAGGAT+TGG 0.478050 6_4:-6976077 None:intergenic
GGTGAAAGGTTAGACTCAAC+AGG 0.478337 6_4:+6974888 Msa0974100:CDS
TTGGCATTTATTGATTCGAA+TGG 0.478491 6_4:-6975656 None:intergenic
GGCCCAAGGTGTAATCTCAT+TGG 0.478710 6_4:+6976147 Msa0974100:CDS
TTGAACAATCTCATTGCTCA+TGG 0.479291 6_4:-6971645 None:intergenic
ACTTATAGGCCATCTTTGCC+AGG 0.479835 6_4:+6975890 Msa0974100:CDS
CCAGTTAATAATCAACCATC+AGG 0.481608 6_4:+6974310 Msa0974100:CDS
ATCAGGCGTTAATTCCCTTA+GGG 0.483589 6_4:+6974327 Msa0974100:CDS
GGCATCTGGGATGGAGCGTG+TGG 0.487332 6_4:-6976046 None:intergenic
GGATAGAAATGGTATGGATA+AGG 0.494929 6_4:+6975319 Msa0974100:CDS
CAACATCGTAATCATGCTAA+AGG 0.497052 6_4:+6971854 Msa0974100:CDS
GCGCCTAATGGAATAACAAC+AGG 0.497466 6_4:+6976722 Msa0974100:CDS
TATTTAGCTGACAATTCTAC+TGG 0.498608 6_4:+6975041 Msa0974100:CDS
GGCATAGACAGGTCACAGTT+AGG 0.499248 6_4:+6976743 Msa0974100:CDS
TATTGTGAAGAATGTTGGCC+AGG 0.499257 6_4:+6974042 Msa0974100:CDS
TTAGACTCAACAGGAACTGT+TGG 0.499630 6_4:+6974897 Msa0974100:CDS
ATAGTAAGATCAGTGATGAT+AGG 0.500445 6_4:-6971821 None:intergenic
GGTACAAATGGACTAGGATT+GGG 0.500633 6_4:-6976076 None:intergenic
TAAGTAAATTGTGACGCCGC+TGG 0.501369 6_4:-6975872 None:intergenic
GGCCATAATCAACAGCATGA+TGG 0.502882 6_4:-6975088 None:intergenic
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6_4:+6976683 Msa0974100:CDS
CTGAAGAGGAGGAGTTCGAT+TGG 0.502985 6_4:+6975366 Msa0974100:CDS
TGAATTCTTCAATTGTTCAA+AGG 0.503051 6_4:-6971501 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6_4:-6976371 None:intergenic
ATAGATTTCGTTACCTGTGA+AGG 0.506777 6_4:-6976181 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6_4:-6976656 None:intergenic
GGATGAGGTGGCATCTGGGA+TGG 0.507178 6_4:-6976055 None:intergenic
GGACCATGTCCTGGCAAAGA+TGG 0.508872 6_4:-6975899 None:intergenic
TGCGACATCTCTTTGGTACC+TGG 0.510544 6_4:+6974227 Msa0974100:CDS
TAATTTGATTAATTCACTCA+TGG 0.510613 6_4:+6976126 Msa0974100:CDS
CACCAAGAATTGGACTTGAT+AGG 0.511974 6_4:+6974994 Msa0974100:CDS
TCTGATGAGAAACCGATAGT+TGG 0.513144 6_4:-6975443 None:intergenic
TAATCAATTTGTCCCAAGTA+GGG 0.514638 6_4:+6974953 Msa0974100:CDS
CCTTTGCCAGGCCAAAGAAT+CGG 0.515014 6_4:+6975968 Msa0974100:CDS
GGATCCTTTGTAAATGCTCA+TGG 0.515592 6_4:-6977789 None:intergenic
ATAAATGGTGCATTGATGAA+TGG 0.520360 6_4:+6977846 Msa0974100:three_prime_UTR
CAATTTGTCCCAAGTAGGGT+TGG 0.520932 6_4:+6974957 Msa0974100:CDS
AGGCCATCTTTGCCAGGACA+TGG 0.522510 6_4:+6975896 Msa0974100:CDS
TTGCGACCTTTACCTCCACC+TGG 0.523511 6_4:+6976022 Msa0974100:CDS
GGAGTTATGCTGGGAGGACG+TGG 0.523802 6_4:-6975602 None:intergenic
ATTCAAACAGTAAATGCTCA+TGG 0.523956 6_4:-6977810 None:intergenic
TTGTTTCCGATTCTTTGGCC+TGG 0.524049 6_4:-6975974 None:intergenic
AACAATCTCATTGCTCATGG+TGG 0.527409 6_4:-6971642 None:intergenic
GTGTTTGTACACTGTTTGGC+GGG 0.527616 6_4:-6975820 None:intergenic
AGAGCACTAATTGATGCCTA+TGG 0.528940 6_4:+6975242 Msa0974100:CDS
TGCCTCATTTCAAAAGCTGC+AGG 0.529200 6_4:-6975560 None:intergenic
CAAAATACATGTGCATTATG+TGG 0.529245 6_4:+6976629 Msa0974100:CDS
TTCCGACTATCACCAGAAAA+CGG 0.530968 6_4:-6975161 None:intergenic
GTTGAGCGGCTGGATAGAAA+TGG 0.532637 6_4:+6975308 Msa0974100:CDS
AAGGTCGCAAAGCTCCTCCC+TGG 0.535607 6_4:-6976009 None:intergenic
TGAAGAGGAGGAGTTCGATT+GGG 0.536389 6_4:+6975367 Msa0974100:CDS
TAGATTTCGTTACCTGTGAA+GGG 0.539547 6_4:-6976180 None:intergenic
GAATAACAACAGGCATAGAC+AGG 0.540275 6_4:+6976732 Msa0974100:CDS
GGTTTCCTGCAACCAACTAT+CGG 0.543300 6_4:+6975431 Msa0974100:CDS
CCATCACAAAATCTTCAGAC+GGG 0.543390 6_4:-6976802 None:intergenic
GAGGAGATTCAGAAGCCCTA+AGG 0.544074 6_4:-6974342 None:intergenic
AGCACAGCAGTCACATGGAT+TGG 0.544101 6_4:+6976417 Msa0974100:CDS
AATATCCAACAGTTGGCTGT+TGG 0.544187 6_4:-6976102 None:intergenic
AAATTAGAATATCCAACAGT+TGG 0.545058 6_4:-6976109 None:intergenic
GGTGTTTGTACACTGTTTGG+CGG 0.545314 6_4:-6975821 None:intergenic
TTAATCAATTTGTCCCAAGT+AGG 0.545867 6_4:+6974952 Msa0974100:CDS
CTCATAGCAGGACCATGTCC+TGG 0.548016 6_4:-6975908 None:intergenic
GACAGTATTGTGAAGAATGT+TGG 0.548430 6_4:+6974037 Msa0974100:CDS
TGACACTGAAGAAGTTGCAT+TGG 0.548483 6_4:-6975486 None:intergenic
TGGCTTGGTACAAATGGACT+AGG 0.548518 6_4:-6976082 None:intergenic
GAGAAGAAGAGTTGAGTGAG+TGG 0.550334 6_4:+6975129 Msa0974100:CDS
GGCTAATCAAGCCCCTTCAC+AGG 0.551075 6_4:+6976168 Msa0974100:CDS
GCGGCTGGATAGAAATGGTA+TGG 0.551376 6_4:+6975313 Msa0974100:CDS
GTAGACCATGGTAGAAGTAA+TGG 0.552062 6_4:+6975410 Msa0974100:CDS
CCTCACAGGTTGCAGGTGAA+AGG 0.553428 6_4:+6974874 Msa0974100:intron
GGGATGGAGCAGTAATTACT+GGG 0.554304 6_4:+6977751 Msa0974100:three_prime_UTR
ATGCAACTTCTTCAGTGTCA+AGG 0.556856 6_4:+6975489 Msa0974100:CDS
CTACCATGGTCTACTACTGC+AGG 0.557738 6_4:-6975401 None:intergenic
GCATCTGGGATGGAGCGTGT+GGG 0.559981 6_4:-6976045 None:intergenic
ATCTTCCGTAAGACAGAAGG+AGG 0.562765 6_4:-6974262 None:intergenic
GGGTTAGGGTTCTGAATTTG+GGG 0.562839 6_4:-6971578 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6_4:-6975632 None:intergenic
CTAAGGGAATTAACGCCTGA+TGG 0.563337 6_4:-6974325 None:intergenic
ATTGGGATGAGGTGGCATCT+GGG 0.564645 6_4:-6976059 None:intergenic
TGCAACTTCTTCAGTGTCAA+GGG 0.565136 6_4:+6975490 Msa0974100:CDS
CCAAGCCAACAGCCAACTGT+TGG 0.566173 6_4:+6976097 Msa0974100:CDS
TATTTGCAACCGTATTGTTG+AGG 0.569428 6_4:+6971889 Msa0974100:CDS
CTATCAAGTCCAATTCTTGG+TGG 0.571361 6_4:-6974993 None:intergenic
TCCATCACAAAATCTTCAGA+CGG 0.571706 6_4:-6976803 None:intergenic
ATGCAGGGCACCTATGAAGA+AGG 0.574284 6_4:+6977440 Msa0974100:intron
ACAATCTCATTGCTCATGGT+GGG 0.574651 6_4:-6971641 None:intergenic
TCAATATTTGAATTGAGACC+AGG 0.575901 6_4:-6975518 None:intergenic
ATTAATTCACTCATGGCCCA+AGG 0.576294 6_4:+6976133 Msa0974100:CDS
AAGATCTTCCAACCCTACTT+GGG 0.576601 6_4:-6974965 None:intergenic
GTAAGCCTTTGTTAGTTGAG+CGG 0.577243 6_4:+6975294 Msa0974100:CDS
AACAGGTCGTACATTTGGCA+GGG 0.583155 6_4:-6975936 None:intergenic
TAGCTGACAATTCTACTGGT+AGG 0.585559 6_4:+6975045 Msa0974100:CDS
CCTAGACAGTGCACAACTTG+TGG 0.586792 6_4:+6976371 Msa0974100:CDS
AATAGTACCATTGTGAGTCA+TGG 0.588735 6_4:+6975677 Msa0974100:CDS
ACAGGTCGTACATTTGGCAG+GGG 0.590048 6_4:-6975935 None:intergenic
GATGGAGCGTGTGGGCCAGG+TGG 0.590396 6_4:-6976037 None:intergenic
AGCAGTAATTACTGGGGACA+TGG 0.590558 6_4:+6977758 Msa0974100:three_prime_UTR
TGCAACGATTGTTCATGCAC+AGG 0.594090 6_4:-6975719 None:intergenic
GGACTAGGATTGGGATGAGG+TGG 0.594447 6_4:-6976067 None:intergenic
AATTACTGGGGACATGGCAA+AGG 0.594802 6_4:+6977764 Msa0974100:three_prime_UTR
AGACGAGCACAGCAGTCACA+TGG 0.599845 6_4:+6976412 Msa0974100:CDS
AGATTTCGTTACCTGTGAAG+GGG 0.600998 6_4:-6976179 None:intergenic
AGTGAGACGATGTGGCTTAG+TGG 0.601641 6_4:+6976503 Msa0974100:CDS
AATCTCCTCGACCAACTCAT+GGG 0.602277 6_4:+6974356 Msa0974100:CDS
GTTTGATCCAGATACTCTGA+AGG 0.602293 6_4:+6976307 Msa0974100:CDS
AGGAGATTCAGAAGCCCTAA+GGG 0.603089 6_4:-6974341 None:intergenic
TCAATCTTCCGTAAGACAGA+AGG 0.606789 6_4:-6974265 None:intergenic
CTCACAAACCATTTACGAGA+GGG 0.607148 6_4:-6976482 None:intergenic
GGAAACCATTACTTCTACCA+TGG 0.608961 6_4:-6975415 None:intergenic
TCCAGCCGCTCAACTAACAA+AGG 0.610598 6_4:-6975299 None:intergenic
GGGTTAGATGAAATCAGACC+AGG 0.611439 6_4:-6975800 None:intergenic
GGAAATATAGGAGTTATGCT+GGG 0.611878 6_4:-6975611 None:intergenic
TTAACATGTATCCCATGAGT+TGG 0.613297 6_4:-6974367 None:intergenic
AACGTCGTGAAGAAGATCCT+CGG 0.613895 6_4:+6971717 Msa0974100:CDS
CCTCCACCATCAATCCTCGT+TGG 0.618578 6_4:+6971671 Msa0974100:CDS
TGTATCCCATGAGTTGGTCG+AGG 0.619165 6_4:-6974361 None:intergenic
AAAGCTGCAGGCAAAACTGG+TGG 0.620190 6_4:-6975548 None:intergenic
AAATATTCATCCATATATGA+GGG 0.620513 6_4:-6975023 None:intergenic
ATGTACATAATTTAGGCAAG+AGG 0.623567 6_4:-6977594 None:intergenic
CGACCAACGAGGATTGATGG+TGG 0.625674 6_4:-6971674 None:intergenic
TGTGACGCCGCTGGATCCTG+AGG 0.629147 6_4:-6975863 None:intergenic
CCAACGAGGATTGATGGTGG+AGG 0.631737 6_4:-6971671 None:intergenic
ATGGCAGAATACTGAAGAGG+AGG 0.632607 6_4:+6975355 Msa0974100:CDS
TGCATTTAGCATGAATAATG+GGG 0.635399 6_4:-6976766 None:intergenic
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6_4:+6976672 Msa0974100:CDS
CAATCTCATTGCTCATGGTG+GGG 0.637259 6_4:-6971640 None:intergenic
CGTCTTGGGATTTGAATCGG+AGG 0.638892 6_4:-6976394 None:intergenic
CTGTCCAAGAGATAGAGTGA+AGG 0.641585 6_4:-6974019 None:intergenic
AATGGACTAGGATTGGGATG+AGG 0.642770 6_4:-6976070 None:intergenic
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6_4:+6976604 Msa0974100:CDS
CCGAAACTCATAAGTTACAG+TGG 0.652773 6_4:-6977511 None:intergenic
TGTCTTACGGAAGATTGACG+TGG 0.654293 6_4:+6974270 Msa0974100:CDS
ATAAGGTTATGACAACATCA+TGG 0.656509 6_4:+6975336 Msa0974100:CDS
AATTAGACCATGACTCACAA+TGG 0.658655 6_4:-6975684 None:intergenic
ATAAACTATAGATGTTACAC+AGG 0.660062 6_4:-6977628 None:intergenic
CTGCAGGCAAAACTGGTGGA+CGG 0.660560 6_4:-6975544 None:intergenic
ATGACATATAGCCTTAGTAA+CGG 0.660592 6_4:+6975200 Msa0974100:CDS
TAGCCAATGAGATTACACCT+TGG 0.661273 6_4:-6976150 None:intergenic
GATGTGGCTTAGTGGTGCAG+AGG 0.663497 6_4:+6976511 Msa0974100:CDS
ATCATGGCAGAATACTGAAG+AGG 0.665757 6_4:+6975352 Msa0974100:CDS
TAACCTACTTCGGGTAGACG+CGG 0.669168 6_4:-6974085 None:intergenic
CATCACAAAATCTTCAGACG+GGG 0.674739 6_4:-6976801 None:intergenic
CCATAATCAACAGCATGATG+GGG 0.676024 6_4:-6975086 None:intergenic
CAGGTCGTACATTTGGCAGG+GGG 0.677425 6_4:-6975934 None:intergenic
ACTCACAAACCATTTACGAG+AGG 0.681960 6_4:-6976483 None:intergenic
GACGCCGCTGGATCCTGAGG+TGG 0.683714 6_4:-6975860 None:intergenic
GGATCCATGAGCATTTACAA+AGG 0.684536 6_4:+6977785 Msa0974100:three_prime_UTR
GTGCATGAACAATCGTTGCA+CGG 0.685001 6_4:+6975722 Msa0974100:CDS
AGTCCTGCAGTAGTAGACCA+TGG 0.689778 6_4:+6975398 Msa0974100:CDS
GGTTGCGAATTTCTCAACCG+AGG 0.700396 6_4:-6971734 None:intergenic
GCAGTCAAAGAAAACGAATG+CGG 0.700511 6_4:+6977462 Msa0974100:CDS
GGTTTGTGAGTGAGACGATG+TGG 0.720083 6_4:+6976495 Msa0974100:CDS
TCTTCCGTAAGACAGAAGGA+GGG 0.728444 6_4:-6974261 None:intergenic
GCAGAATCTTCTGAAATACG+TGG 0.729536 6_4:+6977571 Msa0974100:three_prime_UTR
GGTTAGGGTTCTGAATTTGG+GGG 0.730916 6_4:-6971577 None:intergenic
AATATAGGAGTTATGCTGGG+AGG 0.735215 6_4:-6975608 None:intergenic
GGATGGAGCAGTAATTACTG+GGG 0.757111 6_4:+6977752 Msa0974100:three_prime_UTR
TTTGCCAACTGAGACCACTG+AGG 0.763418 6_4:+6976562 Msa0974100:CDS
AAGCCTTGAATCGACCAACG+AGG 0.765396 6_4:-6971685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTAATAATTGTTTATT+TGG + chr6_4:6972138-6972157 Msa0974100:intron 10.0%
!! TGATTAATAATTGTTTATTT+GGG + chr6_4:6972139-6972158 Msa0974100:intron 10.0%
!! ATAATTTCGTTTAATAATAA+TGG + chr6_4:6972609-6972628 Msa0974100:intron 10.0%
!! TAATTTCGTTTAATAATAAT+GGG + chr6_4:6972610-6972629 Msa0974100:intron 10.0%
!! ATATAATATAATTACAAAGT+TGG - chr6_4:6976264-6976283 None:intergenic 10.0%
!! TGTAATTATATTATATTTGT+AGG + chr6_4:6976268-6976287 Msa0974100:intron 10.0%
!!! ACAATTTTAAAAGATTTTTT+GGG - chr6_4:6977710-6977729 None:intergenic 10.0%
!! AATTTCGTTTAATAATAATG+GGG + chr6_4:6972611-6972630 Msa0974100:intron 15.0%
!! ACAAAATAACATATTAACAT+AGG - chr6_4:6973131-6973150 None:intergenic 15.0%
!! TATTTATAGAAAATGATAAG+TGG - chr6_4:6973401-6973420 None:intergenic 15.0%
!! AAATGAAATAGAAAAGAAAA+AGG - chr6_4:6973883-6973902 None:intergenic 15.0%
!! ATAACAGAATTAAATCATTT+AGG - chr6_4:6974129-6974148 None:intergenic 15.0%
!!! AAATATTTTAATTTCTGTTG+AGG + chr6_4:6974688-6974707 Msa0974100:intron 15.0%
!!! CAATTTTAAAAGATTTTTTG+GGG - chr6_4:6977709-6977728 None:intergenic 15.0%
!!! GACAATTTTAAAAGATTTTT+TGG - chr6_4:6977711-6977730 None:intergenic 15.0%
!!! ATTTCTTTTACATTATTTCT+GGG + chr6_4:6977731-6977750 Msa0974100:three_prime_UTR 15.0%
!!! TTTTAGTTCATTTCATTTGA+TGG + chr6_4:6972078-6972097 Msa0974100:intron 20.0%
!!! TTTAGTTCATTTCATTTGAT+GGG + chr6_4:6972079-6972098 Msa0974100:intron 20.0%
!! ATAATTGTTTATTTGGGAAT+TGG + chr6_4:6972145-6972164 Msa0974100:intron 20.0%
!!! TGAAAGTAATGATTTTTTTG+AGG + chr6_4:6972172-6972191 Msa0974100:intron 20.0%
!!! AGTACTTAAAAATCGATTTT+TGG + chr6_4:6972529-6972548 Msa0974100:intron 20.0%
!!! TTTAATAATAATGGGGTTTA+TGG + chr6_4:6972618-6972637 Msa0974100:intron 20.0%
!! CAAAATCATTCAATTTATTC+AGG - chr6_4:6973001-6973020 None:intergenic 20.0%
!!! CTGAATAAATTGAATGATTT+TGG + chr6_4:6972999-6973018 Msa0974100:intron 20.0%
!! CTCTTCTTATTAAGTTTATA+CGG + chr6_4:6973572-6973591 Msa0974100:intron 20.0%
!! TCTTCTTATTAAGTTTATAC+GGG + chr6_4:6973573-6973592 Msa0974100:intron 20.0%
!! AAATAAGTTTGATTCTTTGT+TGG + chr6_4:6973619-6973638 Msa0974100:intron 20.0%
!! CCTGAAAAAAAATAAACAAT+TGG - chr6_4:6973979-6973998 None:intergenic 20.0%
!!! CCAATTGTTTATTTTTTTTC+AGG + chr6_4:6973976-6973995 Msa0974100:intron 20.0%
!! AAATATTCATCCATATATGA+GGG - chr6_4:6975026-6975045 None:intergenic 20.0%
!! TAAATATTCATCCATATATG+AGG - chr6_4:6975027-6975046 None:intergenic 20.0%
!! TAATTTGATTAATTCACTCA+TGG + chr6_4:6976126-6976145 Msa0974100:CDS 20.0%
!!! TTATATTTGTAGGATTTTGT+TGG + chr6_4:6976278-6976297 Msa0974100:intron 20.0%
!!! TTATTTTTTTACTTTCCCAA+TGG + chr6_4:6977058-6977077 Msa0974100:intron 20.0%
!!! CATTTCTTTTACATTATTTC+TGG + chr6_4:6977730-6977749 Msa0974100:three_prime_UTR 20.0%
!! ATTGTTGTATCCAATATAAA+TGG + chr6_4:6977831-6977850 Msa0974100:three_prime_UTR 20.0%
! TGAATTCTTCAATTGTTCAA+AGG - chr6_4:6971504-6971523 None:intergenic 25.0%
!!! AAACATTAAGGGTTTTGAAA+CGG - chr6_4:6971551-6971570 None:intergenic 25.0%
! GAAAATTGAGAGAGAAATTA+GGG - chr6_4:6971601-6971620 None:intergenic 25.0%
! AAACAAAAACCTCAACAATA+CGG - chr6_4:6971901-6971920 None:intergenic 25.0%
! ATAACTCTTAATCTGAACAA+TGG - chr6_4:6971952-6971971 None:intergenic 25.0%
!! TTAGTTTATTGCTATTCGAT+AGG + chr6_4:6972042-6972061 Msa0974100:intron 25.0%
! TGAAAATGATAAGGATTACA+TGG + chr6_4:6972237-6972256 Msa0974100:intron 25.0%
!! TTGATAACATTGTTAACAGA+TGG + chr6_4:6972459-6972478 Msa0974100:intron 25.0%
! TAAGTACTCAATTGTGTTAA+TGG - chr6_4:6972517-6972536 None:intergenic 25.0%
! ACTAACTATTTCACTTTCAT+TGG - chr6_4:6972557-6972576 None:intergenic 25.0%
! TGAAATAGTTAGTGTATCAA+TGG + chr6_4:6972564-6972583 Msa0974100:intron 25.0%
! ATAATAGGAATTAGGAATTC+AGG + chr6_4:6972653-6972672 Msa0974100:intron 25.0%
! GAAATAAATGAGAATGAACA+AGG + chr6_4:6972951-6972970 Msa0974100:intron 25.0%
! GAAATATATATGAAGTAAGC+TGG - chr6_4:6973105-6973124 None:intergenic 25.0%
! CGTATAAACTTAATAAGAAG+AGG - chr6_4:6973574-6973593 None:intergenic 25.0%
!! GAATCAAACTTATTTCTCAT+TGG - chr6_4:6973614-6973633 None:intergenic 25.0%
! TTTGTTGGAAAAATCATACA+GGG + chr6_4:6973634-6973653 Msa0974100:intron 25.0%
! CTAAAATCAAAATTGATACG+AGG - chr6_4:6973691-6973710 None:intergenic 25.0%
! ACTTTGTAAGAATTGGTTAA+AGG + chr6_4:6973737-6973756 Msa0974100:intron 25.0%
! TAAGAATTGGTTAAAGGATT+CGG + chr6_4:6973743-6973762 Msa0974100:intron 25.0%
! AAATTACAATAACCTACTTC+GGG - chr6_4:6974097-6974116 None:intergenic 25.0%
! CAAATTACAATAACCTACTT+CGG - chr6_4:6974098-6974117 None:intergenic 25.0%
!! GTACTCCTTACAAAATATTT+TGG + chr6_4:6974464-6974483 Msa0974100:intron 25.0%
!!! TCCTTACAAAATATTTTGGA+TGG + chr6_4:6974468-6974487 Msa0974100:intron 25.0%
!! TCCATCCAAAATATTTTGTA+AGG - chr6_4:6974472-6974491 None:intergenic 25.0%
! ATTTAGTTGCGGATTTAATA+AGG + chr6_4:6974502-6974521 Msa0974100:intron 25.0%
! AAATTAGAATATCCAACAGT+TGG - chr6_4:6976112-6976131 None:intergenic 25.0%
! GAAAAAATATAGTTCAATGC+TGG - chr6_4:6976909-6976928 None:intergenic 25.0%
! ATGTGCAATTTACGATATAA+TGG - chr6_4:6977166-6977185 None:intergenic 25.0%
!! ATATCGTAAATTGCACATTT+TGG + chr6_4:6977168-6977187 Msa0974100:intron 25.0%
! CCTATACATGTACATAATTT+AGG - chr6_4:6977604-6977623 None:intergenic 25.0%
! CCTAAATTATGTACATGTAT+AGG + chr6_4:6977601-6977620 Msa0974100:three_prime_UTR 25.0%
! ATAAACTATAGATGTTACAC+AGG - chr6_4:6977631-6977650 None:intergenic 25.0%
! TATAGTTTATTGCAGTCAAA+AGG + chr6_4:6977641-6977660 Msa0974100:three_prime_UTR 25.0%
GGAAAATTGAGAGAGAAATT+AGG - chr6_4:6971602-6971621 None:intergenic 30.0%
TGAACAATTTCTTCTGTTGA+AGG - chr6_4:6971758-6971777 None:intergenic 30.0%
ATAGTAAGATCAGTGATGAT+AGG - chr6_4:6971824-6971843 None:intergenic 30.0%
! TGGTGTGGAATTTTACAAAA+GGG - chr6_4:6971932-6971951 None:intergenic 30.0%
! ATGGTGTGGAATTTTACAAA+AGG - chr6_4:6971933-6971952 None:intergenic 30.0%
TTAAACCAATTAGTAGCATC+TGG + chr6_4:6972209-6972228 Msa0974100:intron 30.0%
TAAACCAATTAGTAGCATCT+GGG + chr6_4:6972210-6972229 Msa0974100:intron 30.0%
ATGTTATCAATCACAAATCG+CGG - chr6_4:6972449-6972468 None:intergenic 30.0%
AATAGTTAGTGTATCAATGG+TGG + chr6_4:6972567-6972586 Msa0974100:intron 30.0%
ATTCCTATTATATCCACCAT+AGG - chr6_4:6972644-6972663 None:intergenic 30.0%
! TGGTGGATATAATAGGAATT+AGG + chr6_4:6972645-6972664 Msa0974100:intron 30.0%
GACAAACATTTCATCTGAAA+CGG + chr6_4:6972769-6972788 Msa0974100:intron 30.0%
! ACAAACATTTCATCTGAAAC+GGG + chr6_4:6972770-6972789 Msa0974100:intron 30.0%
! GCTGAAATGATTAAGTCTTT+TGG + chr6_4:6972812-6972831 Msa0974100:intron 30.0%
ACTTGCTTGGAGTAAATATT+AGG + chr6_4:6973035-6973054 Msa0974100:intron 30.0%
TACTTATGCTAGAAGATTGT+TGG + chr6_4:6973217-6973236 Msa0974100:intron 30.0%
ACTTATGCTAGAAGATTGTT+GGG + chr6_4:6973218-6973237 Msa0974100:intron 30.0%
GGATTGAAAATTGGCATTAT+AGG - chr6_4:6973424-6973443 None:intergenic 30.0%
GTAGTAAGAGGATTGAAAAT+TGG - chr6_4:6973433-6973452 None:intergenic 30.0%
AAAGTGTGTTATGTAGTAAG+AGG - chr6_4:6973445-6973464 None:intergenic 30.0%
TGCTTTATCTTTGTCAACAT+TGG + chr6_4:6973499-6973518 Msa0974100:intron 30.0%
CTTTGTTGGAAAAATCATAC+AGG + chr6_4:6973633-6973652 Msa0974100:intron 30.0%
ATCAAAATTGATACGAGGTT+AGG - chr6_4:6973686-6973705 None:intergenic 30.0%
ATTTATCGTCACTAATCTCT+GGG + chr6_4:6973713-6973732 Msa0974100:intron 30.0%
! CATTTTGCATGATGAGTTAT+GGG - chr6_4:6973809-6973828 None:intergenic 30.0%
! ACATTTTGCATGATGAGTTA+TGG - chr6_4:6973810-6973829 None:intergenic 30.0%
CTATTTGTCTTACGTATCTT+GGG - chr6_4:6974393-6974412 None:intergenic 30.0%
TCTATTTGTCTTACGTATCT+TGG - chr6_4:6974394-6974413 None:intergenic 30.0%
GGATTTAATAAGGATGTGTT+TGG + chr6_4:6974512-6974531 Msa0974100:intron 30.0%
ACAAAAATCACATTGAGTTC+TGG - chr6_4:6974596-6974615 None:intergenic 30.0%
! AGAACTCAATGTGATTTTTG+TGG + chr6_4:6974595-6974614 Msa0974100:intron 30.0%
CTATTTCCTTGTATTCAGTA+AGG + chr6_4:6974742-6974761 Msa0974100:intron 30.0%
ACTGTTGGAAATGCAAATTT+CGG + chr6_4:6974912-6974931 Msa0974100:CDS 30.0%
TTAATCAATTTGTCCCAAGT+AGG + chr6_4:6974952-6974971 Msa0974100:CDS 30.0%
TAATCAATTTGTCCCAAGTA+GGG + chr6_4:6974953-6974972 Msa0974100:CDS 30.0%
TATTTAGCTGACAATTCTAC+TGG + chr6_4:6975041-6975060 Msa0974100:CDS 30.0%
! ATGACATATAGCCTTAGTAA+CGG + chr6_4:6975200-6975219 Msa0974100:CDS 30.0%
ATAAGGTTATGACAACATCA+TGG + chr6_4:6975336-6975355 Msa0974100:CDS 30.0%
TCAATATTTGAATTGAGACC+AGG - chr6_4:6975521-6975540 None:intergenic 30.0%
!! TTGGCATTTATTGATTCGAA+TGG - chr6_4:6975659-6975678 None:intergenic 30.0%
! AAACAACTCTTTTCATTTCC+AGG + chr6_4:6975991-6976010 Msa0974100:CDS 30.0%
! AACAACTCTTTTCATTTCCA+GGG + chr6_4:6975992-6976011 Msa0974100:CDS 30.0%
GTCAAAAATGGAAGGAAAAT+GGG - chr6_4:6976230-6976249 None:intergenic 30.0%
AGTCAAAAATGGAAGGAAAA+TGG - chr6_4:6976231-6976250 None:intergenic 30.0%
AAAGAAAGATGATGAAGAGT+TGG + chr6_4:6976586-6976605 Msa0974100:CDS 30.0%
! CACATAATGCACATGTATTT+TGG - chr6_4:6976631-6976650 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6_4:6976629-6976648 Msa0974100:CDS 30.0%
TGCATTTAGCATGAATAATG+GGG - chr6_4:6976769-6976788 None:intergenic 30.0%
CTGCATTTAGCATGAATAAT+GGG - chr6_4:6976770-6976789 None:intergenic 30.0%
TCTGCATTTAGCATGAATAA+TGG - chr6_4:6976771-6976790 None:intergenic 30.0%
! GAATAAATCTAGTTCAATGC+TGG - chr6_4:6977032-6977051 None:intergenic 30.0%
! CAAAAACACGTTTTACCATT+GGG - chr6_4:6977076-6977095 None:intergenic 30.0%
!! AATGGTAAAACGTGTTTTTG+CGG + chr6_4:6977076-6977095 Msa0974100:intron 30.0%
TTTGCAAAACATGACATAGA+AGG - chr6_4:6977231-6977250 None:intergenic 30.0%
! TATGTCATGTTTTGCAAATG+TGG + chr6_4:6977233-6977252 Msa0974100:intron 30.0%
! TTTTGCAAATGTGGATATCA+TGG + chr6_4:6977242-6977261 Msa0974100:intron 30.0%
GAAGTTAGCAGTGATTAAAT+AGG - chr6_4:6977348-6977367 None:intergenic 30.0%
TAAGTTACAGTGGACAAAAA+TGG - chr6_4:6977504-6977523 None:intergenic 30.0%
ATGTACATAATTTAGGCAAG+AGG - chr6_4:6977597-6977616 None:intergenic 30.0%
!!! CTTTTACATTATTTCTGGGA+TGG + chr6_4:6977735-6977754 Msa0974100:three_prime_UTR 30.0%
ATTCAAACAGTAAATGCTCA+TGG - chr6_4:6977813-6977832 None:intergenic 30.0%
CATCAATGCACCATTTATAT+TGG - chr6_4:6977844-6977863 None:intergenic 30.0%
! ATAAATGGTGCATTGATGAA+TGG + chr6_4:6977846-6977865 Msa0974100:three_prime_UTR 30.0%
GGGGGAAAATGAAACATTAA+GGG - chr6_4:6971562-6971581 None:intergenic 35.0%
TGGGGGAAAATGAAACATTA+AGG - chr6_4:6971563-6971582 None:intergenic 35.0%
TGAGAGAGAAATTAGGGTTA+GGG - chr6_4:6971595-6971614 None:intergenic 35.0%
TTGAGAGAGAAATTAGGGTT+AGG - chr6_4:6971596-6971615 None:intergenic 35.0%
GGGTGTGAAATTGAGAAATT+GGG - chr6_4:6971623-6971642 None:intergenic 35.0%
TTGAACAATCTCATTGCTCA+TGG - chr6_4:6971648-6971667 None:intergenic 35.0%
CAACATCGTAATCATGCTAA+AGG + chr6_4:6971854-6971873 Msa0974100:CDS 35.0%
TATTTGCAACCGTATTGTTG+AGG + chr6_4:6971889-6971908 Msa0974100:CDS 35.0%
! GTGTGGAATTTTACAAAAGG+GGG - chr6_4:6971930-6971949 None:intergenic 35.0%
! GGTGTGGAATTTTACAAAAG+GGG - chr6_4:6971931-6971950 None:intergenic 35.0%
TCTTAATCTGAACAATGGTG+TGG - chr6_4:6971947-6971966 None:intergenic 35.0%
!!! TTTGATGGGTTTCACAGTTT+TGG + chr6_4:6972093-6972112 Msa0974100:intron 35.0%
CTGGGCAATTGAAAATGATA+AGG + chr6_4:6972228-6972247 Msa0974100:intron 35.0%
TTAAACGAAATTATGTGCCC+TGG - chr6_4:6972603-6972622 None:intergenic 35.0%
! ATATGAGTTACCTGGGTTTT+AGG + chr6_4:6972916-6972935 Msa0974100:intron 35.0%
AACATTAGCGTATACTTGCT+TGG + chr6_4:6973022-6973041 Msa0974100:intron 35.0%
TTTAGACAAGCTGTTAACCA+AGG + chr6_4:6973189-6973208 Msa0974100:intron 35.0%
ATGTCATCTAACTGACTGTT+AGG + chr6_4:6973252-6973271 Msa0974100:intron 35.0%
CGAACTGGTAAGAATATGTT+AGG - chr6_4:6973356-6973375 None:intergenic 35.0%
! GAAAATGATAAGTGGTGATG+AGG - chr6_4:6973393-6973412 None:intergenic 35.0%
GATTTATCGTCACTAATCTC+TGG + chr6_4:6973712-6973731 Msa0974100:intron 35.0%
TCTGGGAACTTTGTAAGAAT+TGG + chr6_4:6973730-6973749 Msa0974100:intron 35.0%
ATTGGAGACCATACAAATAG+CGG - chr6_4:6973961-6973980 None:intergenic 35.0%
GACAGTATTGTGAAGAATGT+TGG + chr6_4:6974037-6974056 Msa0974100:CDS 35.0%
!! AGAAGTATCGAACATATTCC+TGG - chr6_4:6974063-6974082 None:intergenic 35.0%
! TATAGTTCTATTGTCTGCCT+AGG + chr6_4:6974156-6974175 Msa0974100:intron 35.0%
CCTGATGGTTGATTATTAAC+TGG - chr6_4:6974313-6974332 None:intergenic 35.0%
CCAGTTAATAATCAACCATC+AGG + chr6_4:6974310-6974329 Msa0974100:CDS 35.0%
TTAACATGTATCCCATGAGT+TGG - chr6_4:6974370-6974389 None:intergenic 35.0%
! GTAAGGAGTACAGATTTGAA+GGG - chr6_4:6974455-6974474 None:intergenic 35.0%
! TGTAAGGAGTACAGATTTGA+AGG - chr6_4:6974456-6974475 None:intergenic 35.0%
AACTGCATCTCATTTAGTTG+CGG + chr6_4:6974491-6974510 Msa0974100:intron 35.0%
CAAAGTCCTTACTGAATACA+AGG - chr6_4:6974751-6974770 None:intergenic 35.0%
GACTTTGTTCTACATGAAAC+TGG + chr6_4:6974764-6974783 Msa0974100:intron 35.0%
GTTGATTATGGCCTAGTTAA+AGG + chr6_4:6975098-6975117 Msa0974100:CDS 35.0%
TATGGCCTAGTTAAAGGATT+AGG + chr6_4:6975104-6975123 Msa0974100:CDS 35.0%
CTCTACCTAATCCTTTAACT+AGG - chr6_4:6975112-6975131 None:intergenic 35.0%
GGATAGAAATGGTATGGATA+AGG + chr6_4:6975319-6975338 Msa0974100:CDS 35.0%
GGAAATATAGGAGTTATGCT+GGG - chr6_4:6975614-6975633 None:intergenic 35.0%
TGGAAATATAGGAGTTATGC+TGG - chr6_4:6975615-6975634 None:intergenic 35.0%
GGATTCTTCGATGGAAATAT+AGG - chr6_4:6975626-6975645 None:intergenic 35.0%
ATGACTCACAATGGTACTAT+TGG - chr6_4:6975678-6975697 None:intergenic 35.0%
AATAGTACCATTGTGAGTCA+TGG + chr6_4:6975677-6975696 Msa0974100:CDS 35.0%
AATTAGACCATGACTCACAA+TGG - chr6_4:6975687-6975706 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6_4:6975982-6976001 None:intergenic 35.0%
TAGATTTCGTTACCTGTGAA+GGG - chr6_4:6976183-6976202 None:intergenic 35.0%
ATAGATTTCGTTACCTGTGA+AGG - chr6_4:6976184-6976203 None:intergenic 35.0%
TCTAGGAAGATTACCGTATA+AGG - chr6_4:6976357-6976376 None:intergenic 35.0%
!! GCTTACGGTTTTTAGACATA+CGG - chr6_4:6976457-6976476 None:intergenic 35.0%
! ATCATCTTTCTTTTCCTCAG+TGG - chr6_4:6976579-6976598 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6_4:6976643-6976662 Msa0974100:CDS 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6_4:6976659-6976678 None:intergenic 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6_4:6976664-6976683 Msa0974100:CDS 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6_4:6976718-6976737 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6_4:6976728-6976747 None:intergenic 35.0%
TCCATCACAAAATCTTCAGA+CGG - chr6_4:6976806-6976825 None:intergenic 35.0%
!!! AAGATTTTGTGATGGACGAA+GGG + chr6_4:6976810-6976829 Msa0974100:CDS 35.0%
! GCAAAAACACGTTTTACCAT+TGG - chr6_4:6977077-6977096 None:intergenic 35.0%
!! ATGGTAAAACGTGTTTTTGC+GGG + chr6_4:6977077-6977096 Msa0974100:intron 35.0%
TCACAATAGATTGCAACACT+AGG + chr6_4:6977266-6977285 Msa0974100:intron 35.0%
TTGTTTCCCTCTTTATATGC+AGG + chr6_4:6977424-6977443 Msa0974100:intron 35.0%
TGTTTCCCTCTTTATATGCA+GGG + chr6_4:6977425-6977444 Msa0974100:intron 35.0%
CCACTGTAACTTATGAGTTT+CGG + chr6_4:6977511-6977530 Msa0974100:three_prime_UTR 35.0%
GTAAGGAACTGAAAATTTGC+AGG - chr6_4:6977677-6977696 None:intergenic 35.0%
!!! AGATTTTTTGGGGACAGTAA+AGG - chr6_4:6977699-6977718 None:intergenic 35.0%
!! AGGGTTAGGGTTCTGAATTT+GGG - chr6_4:6971582-6971601 None:intergenic 40.0%
!! TAGGGTTAGGGTTCTGAATT+TGG - chr6_4:6971583-6971602 None:intergenic 40.0%
GGGGTGTGAAATTGAGAAAT+TGG - chr6_4:6971624-6971643 None:intergenic 40.0%
ACAATCTCATTGCTCATGGT+GGG - chr6_4:6971644-6971663 None:intergenic 40.0%
AACAATCTCATTGCTCATGG+TGG - chr6_4:6971645-6971664 None:intergenic 40.0%
ATTGCCCAGATGCTACTAAT+TGG - chr6_4:6972217-6972236 None:intergenic 40.0%
TGAACGATGCTGTCAAATAC+CGG + chr6_4:6972291-6972310 Msa0974100:intron 40.0%
CAATCACAAATCGCGGAAAA+CGG - chr6_4:6972442-6972461 None:intergenic 40.0%
!! AATGGTGGATTATAGAAGCC+AGG + chr6_4:6972582-6972601 Msa0974100:intron 40.0%
!! ATGGTGGATTATAGAAGCCA+GGG + chr6_4:6972583-6972602 Msa0974100:intron 40.0%
! ATAATGGGGTTTATGGCCTA+TGG + chr6_4:6972625-6972644 Msa0974100:intron 40.0%
!! TGGCCTATGGTGGATATAAT+AGG + chr6_4:6972638-6972657 Msa0974100:intron 40.0%
TTAGGAATTCAGGACGATGA+TGG + chr6_4:6972663-6972682 Msa0974100:intron 40.0%
TACTGTATTCCAACTTGAGC+AGG - chr6_4:6972841-6972860 None:intergenic 40.0%
GATGATAAGCTGTGAGGATT+TGG - chr6_4:6972866-6972885 None:intergenic 40.0%
AACTCAGATGATAAGCTGTG+AGG - chr6_4:6972872-6972891 None:intergenic 40.0%
TGCGTGTTATATGAGTTACC+TGG + chr6_4:6972908-6972927 Msa0974100:intron 40.0%
GCGTGTTATATGAGTTACCT+GGG + chr6_4:6972909-6972928 Msa0974100:intron 40.0%
CTAGCATAAGTACACAACCT+TGG - chr6_4:6973209-6973228 None:intergenic 40.0%
! GCATGATGAGTTATGGGTTT+TGG - chr6_4:6973803-6973822 None:intergenic 40.0%
ACATGCCACTAAGTTTAGTG+TGG + chr6_4:6973838-6973857 Msa0974100:intron 40.0%
AGTCTCCACACTAAACTTAG+TGG - chr6_4:6973846-6973865 None:intergenic 40.0%
ACTAAGTTTAGTGTGGAGAC+TGG + chr6_4:6973845-6973864 Msa0974100:intron 40.0%
TCGAATCTCCGCTATTTGTA+TGG + chr6_4:6973950-6973969 Msa0974100:intron 40.0%
TATTGTGAAGAATGTTGGCC+AGG + chr6_4:6974042-6974061 Msa0974100:CDS 40.0%
CGCATAGCAGAATGTAAACT+TGG - chr6_4:6974211-6974230 None:intergenic 40.0%
TCAATCTTCCGTAAGACAGA+AGG - chr6_4:6974268-6974287 None:intergenic 40.0%
ATCAGGCGTTAATTCCCTTA+GGG + chr6_4:6974327-6974346 Msa0974100:CDS 40.0%
AAGAGTTCTCTGTTGCTAGA+GGG - chr6_4:6974811-6974830 None:intergenic 40.0%
GATGTATTCTGACAGTGTGT+TGG + chr6_4:6974845-6974864 Msa0974100:intron 40.0%
TTAGACTCAACAGGAACTGT+TGG + chr6_4:6974897-6974916 Msa0974100:CDS 40.0%
AAGATCTTCCAACCCTACTT+GGG - chr6_4:6974968-6974987 None:intergenic 40.0%
CTATCAAGTCCAATTCTTGG+TGG - chr6_4:6974996-6975015 None:intergenic 40.0%
CACCAAGAATTGGACTTGAT+AGG + chr6_4:6974994-6975013 Msa0974100:CDS 40.0%
TGCCTATCAAGTCCAATTCT+TGG - chr6_4:6974999-6975018 None:intergenic 40.0%
TAGGCATATGCCCTCATATA+TGG + chr6_4:6975013-6975032 Msa0974100:CDS 40.0%
TAGCTGACAATTCTACTGGT+AGG + chr6_4:6975045-6975064 Msa0974100:CDS 40.0%
CCATAATCAACAGCATGATG+GGG - chr6_4:6975089-6975108 None:intergenic 40.0%
GCCATAATCAACAGCATGAT+GGG - chr6_4:6975090-6975109 None:intergenic 40.0%
TTCCGACTATCACCAGAAAA+CGG - chr6_4:6975164-6975183 None:intergenic 40.0%
TAGGCATCAATTAGTGCTCT+TGG - chr6_4:6975242-6975261 None:intergenic 40.0%
! AGAGCACTAATTGATGCCTA+TGG + chr6_4:6975242-6975261 Msa0974100:CDS 40.0%
!! TTGGCTTTTGTCACTACCAT+AGG - chr6_4:6975261-6975280 None:intergenic 40.0%
GACAAAAGCCAAGAAACTTC+TGG + chr6_4:6975269-6975288 Msa0974100:CDS 40.0%
GTAAGCCTTTGTTAGTTGAG+CGG + chr6_4:6975294-6975313 Msa0974100:CDS 40.0%
ATCATGGCAGAATACTGAAG+AGG + chr6_4:6975352-6975371 Msa0974100:CDS 40.0%
GTAGACCATGGTAGAAGTAA+TGG + chr6_4:6975410-6975429 Msa0974100:CDS 40.0%
GGAAACCATTACTTCTACCA+TGG - chr6_4:6975418-6975437 None:intergenic 40.0%
TCTGATGAGAAACCGATAGT+TGG - chr6_4:6975446-6975465 None:intergenic 40.0%
TGACACTGAAGAAGTTGCAT+TGG - chr6_4:6975489-6975508 None:intergenic 40.0%
ATGCAACTTCTTCAGTGTCA+AGG + chr6_4:6975489-6975508 Msa0974100:CDS 40.0%
TGCAACTTCTTCAGTGTCAA+GGG + chr6_4:6975490-6975509 Msa0974100:CDS 40.0%
AATATAGGAGTTATGCTGGG+AGG - chr6_4:6975611-6975630 None:intergenic 40.0%
TTCCATCGAAGAATCCTGTT+AGG + chr6_4:6975630-6975649 Msa0974100:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6_4:6975635-6975654 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6_4:6975647-6975666 None:intergenic 40.0%
GATTGTTCATGCACAGGAAA+AGG - chr6_4:6975716-6975735 None:intergenic 40.0%
GGTGGAAAAAACTGGAATGA+CGG - chr6_4:6975845-6975864 None:intergenic 40.0%
!!! ATTCCAGTTTTTTCCACCTC+AGG + chr6_4:6975847-6975866 Msa0974100:CDS 40.0%
CGGCGTCACAATTTACTTAT+AGG + chr6_4:6975876-6975895 Msa0974100:CDS 40.0%
! AACTCTTTTCATTTCCAGGG+AGG + chr6_4:6975995-6976014 Msa0974100:CDS 40.0%
!! GGTACAAATGGACTAGGATT+GGG - chr6_4:6976079-6976098 None:intergenic 40.0%
!! TGGTACAAATGGACTAGGAT+TGG - chr6_4:6976080-6976099 None:intergenic 40.0%
AATATCCAACAGTTGGCTGT+TGG - chr6_4:6976105-6976124 None:intergenic 40.0%
ATTAATTCACTCATGGCCCA+AGG + chr6_4:6976133-6976152 Msa0974100:CDS 40.0%
AGCCAATGAGATTACACCTT+GGG - chr6_4:6976152-6976171 None:intergenic 40.0%
TAGCCAATGAGATTACACCT+TGG - chr6_4:6976153-6976172 None:intergenic 40.0%
AGATTTCGTTACCTGTGAAG+GGG - chr6_4:6976182-6976201 None:intergenic 40.0%
GCAAGCAAGTCAAAAATGGA+AGG - chr6_4:6976238-6976257 None:intergenic 40.0%
GTTCGCAAGCAAGTCAAAAA+TGG - chr6_4:6976242-6976261 None:intergenic 40.0%
GTTTGATCCAGATACTCTGA+AGG + chr6_4:6976307-6976326 Msa0974100:CDS 40.0%
TCTGCAATCAGTGCCTTATA+CGG + chr6_4:6976341-6976360 Msa0974100:CDS 40.0%
CTCACAAACCATTTACGAGA+GGG - chr6_4:6976485-6976504 None:intergenic 40.0%
ACTCACAAACCATTTACGAG+AGG - chr6_4:6976486-6976505 None:intergenic 40.0%
CAAAAAACCTGGAGCTGATT+CGG - chr6_4:6976546-6976565 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6_4:6976621-6976640 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6_4:6976667-6976686 Msa0974100:CDS 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6_4:6976710-6976729 Msa0974100:CDS 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6_4:6976732-6976751 Msa0974100:CDS 40.0%
CATCACAAAATCTTCAGACG+GGG - chr6_4:6976804-6976823 None:intergenic 40.0%
CCATCACAAAATCTTCAGAC+GGG - chr6_4:6976805-6976824 None:intergenic 40.0%
!!! GAAGATTTTGTGATGGACGA+AGG + chr6_4:6976809-6976828 Msa0974100:CDS 40.0%
!!! AGATTTTGTGATGGACGAAG+GGG + chr6_4:6976811-6976830 Msa0974100:CDS 40.0%
ATAACATGACTGCCGAATTC+TGG - chr6_4:6977109-6977128 None:intergenic 40.0%
! CGGCAGTCATGTTATTCTTT+TGG + chr6_4:6977114-6977133 Msa0974100:intron 40.0%
GCAAAACATGACATAGAAGG+CGG - chr6_4:6977228-6977247 None:intergenic 40.0%
TCTTTGACTGCCTTCTTCAT+AGG - chr6_4:6977453-6977472 None:intergenic 40.0%
GCAGTCAAAGAAAACGAATG+CGG + chr6_4:6977462-6977481 Msa0974100:CDS 40.0%
CCGAAACTCATAAGTTACAG+TGG - chr6_4:6977514-6977533 None:intergenic 40.0%
!! GCAGAATCTTCTGAAATACG+TGG + chr6_4:6977571-6977590 Msa0974100:three_prime_UTR 40.0%
!! TTTTGGGGACAGTAAAGGTA+AGG - chr6_4:6977694-6977713 None:intergenic 40.0%
GGATCCATGAGCATTTACAA+AGG + chr6_4:6977785-6977804 Msa0974100:three_prime_UTR 40.0%
GGATCCTTTGTAAATGCTCA+TGG - chr6_4:6977792-6977811 None:intergenic 40.0%
!! GGTTAGGGTTCTGAATTTGG+GGG - chr6_4:6971580-6971599 None:intergenic 45.0%
!! GGGTTAGGGTTCTGAATTTG+GGG - chr6_4:6971581-6971600 None:intergenic 45.0%
CAATCTCATTGCTCATGGTG+GGG - chr6_4:6971643-6971662 None:intergenic 45.0%
AATCGACCAACGAGGATTGA+TGG - chr6_4:6971680-6971699 None:intergenic 45.0%
! AATCCTCGTTGGTCGATTCA+AGG + chr6_4:6971682-6971701 Msa0974100:CDS 45.0%
AACGTCGTGAAGAAGATCCT+CGG + chr6_4:6971717-6971736 Msa0974100:CDS 45.0%
! AAATACCGGCTATAGCGTAG+CGG + chr6_4:6972305-6972324 Msa0974100:intron 45.0%
AAATTCCGCTACGCTATAGC+CGG - chr6_4:6972313-6972332 None:intergenic 45.0%
! CTATGCTACAGTGCTGCTAT+AGG - chr6_4:6972401-6972420 None:intergenic 45.0%
ATAGCAGCACTGTAGCATAG+AGG + chr6_4:6972401-6972420 Msa0974100:intron 45.0%
ACAACCATGTTGTACTGCCT+TGG + chr6_4:6972691-6972710 Msa0974100:intron 45.0%
GTGTTGTCAAATTGCCACCA+AGG - chr6_4:6972711-6972730 None:intergenic 45.0%
! TTTTGGCAACCTGCTCAAGT+TGG + chr6_4:6972829-6972848 Msa0974100:intron 45.0%
CTACAAGCAACCTAAAACCC+AGG - chr6_4:6972929-6972948 None:intergenic 45.0%
! CTAGAAGATTGTTGGGTTGC+TGG + chr6_4:6973225-6973244 Msa0974100:intron 45.0%
GTCAACATTGGCAATCTCAG+AGG + chr6_4:6973511-6973530 Msa0974100:intron 45.0%
AAGTTTAGTGTGGAGACTGG+AGG + chr6_4:6973848-6973867 Msa0974100:intron 45.0%
GCTTCCTTCACTCTATCTCT+TGG + chr6_4:6974015-6974034 Msa0974100:CDS 45.0%
CTGTCCAAGAGATAGAGTGA+AGG - chr6_4:6974022-6974041 None:intergenic 45.0%
TCTGCTATGCGACATCTCTT+TGG + chr6_4:6974220-6974239 Msa0974100:CDS 45.0%
TCTTCCCTCCTTCTGTCTTA+CGG + chr6_4:6974257-6974276 Msa0974100:CDS 45.0%
TCTTCCGTAAGACAGAAGGA+GGG - chr6_4:6974264-6974283 None:intergenic 45.0%
ATCTTCCGTAAGACAGAAGG+AGG - chr6_4:6974265-6974284 None:intergenic 45.0%
TGTCTTACGGAAGATTGACG+TGG + chr6_4:6974270-6974289 Msa0974100:CDS 45.0%
CTAAGGGAATTAACGCCTGA+TGG - chr6_4:6974328-6974347 None:intergenic 45.0%
CATCAGGCGTTAATTCCCTT+AGG + chr6_4:6974326-6974345 Msa0974100:CDS 45.0%
AGGAGATTCAGAAGCCCTAA+GGG - chr6_4:6974344-6974363 None:intergenic 45.0%
AATCTCCTCGACCAACTCAT+GGG + chr6_4:6974356-6974375 Msa0974100:CDS 45.0%
CAAGAGTTCTCTGTTGCTAG+AGG - chr6_4:6974812-6974831 None:intergenic 45.0%
!! TGTGTTGGTTTCATCCTCAC+AGG + chr6_4:6974860-6974879 Msa0974100:intron 45.0%
GGTGAAAGGTTAGACTCAAC+AGG + chr6_4:6974888-6974907 Msa0974100:CDS 45.0%
CAATTTGTCCCAAGTAGGGT+TGG + chr6_4:6974957-6974976 Msa0974100:CDS 45.0%
GAAGATCTTCCAACCCTACT+TGG - chr6_4:6974969-6974988 None:intergenic 45.0%
TCTTCGTCACCACCAAGAAT+TGG + chr6_4:6974984-6975003 Msa0974100:CDS 45.0%
! CCCCATCATGCTGTTGATTA+TGG + chr6_4:6975086-6975105 Msa0974100:CDS 45.0%
GGCCATAATCAACAGCATGA+TGG - chr6_4:6975091-6975110 None:intergenic 45.0%
GAGAAGAAGAGTTGAGTGAG+TGG + chr6_4:6975129-6975148 Msa0974100:CDS 45.0%
!! AGCCGTTTTCTGGTGATAGT+CGG + chr6_4:6975159-6975178 Msa0974100:CDS 45.0%
!! AGTGCTCTTGGATTTTGACG+TGG - chr6_4:6975230-6975249 None:intergenic 45.0%
GCTTACTGCCAGAAGTTTCT+TGG - chr6_4:6975280-6975299 None:intergenic 45.0%
ATGGCAGAATACTGAAGAGG+AGG + chr6_4:6975355-6975374 Msa0974100:CDS 45.0%
TGAAGAGGAGGAGTTCGATT+GGG + chr6_4:6975367-6975386 Msa0974100:CDS 45.0%
GGTTTCCTGCAACCAACTAT+CGG + chr6_4:6975431-6975450 Msa0974100:CDS 45.0%
AGAAACCGATAGTTGGTTGC+AGG - chr6_4:6975439-6975458 None:intergenic 45.0%
TCAAAAGCTGCAGGCAAAAC+TGG - chr6_4:6975554-6975573 None:intergenic 45.0%
!!! TGCCTGCAGCTTTTGAAATG+AGG + chr6_4:6975558-6975577 Msa0974100:CDS 45.0%
TGCCTCATTTCAAAAGCTGC+AGG - chr6_4:6975563-6975582 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6_4:6975588-6975607 None:intergenic 45.0%
TGCAACGATTGTTCATGCAC+AGG - chr6_4:6975722-6975741 None:intergenic 45.0%
GTGCATGAACAATCGTTGCA+CGG + chr6_4:6975722-6975741 Msa0974100:CDS 45.0%
GCTGATTAGGTAGCTGATAC+AGG - chr6_4:6975778-6975797 None:intergenic 45.0%
ATCAGACCAGGAAGCTGATT+AGG - chr6_4:6975791-6975810 None:intergenic 45.0%
GGGTTAGATGAAATCAGACC+AGG - chr6_4:6975803-6975822 None:intergenic 45.0%
GTGTTTGTACACTGTTTGGC+GGG - chr6_4:6975823-6975842 None:intergenic 45.0%
GGTGTTTGTACACTGTTTGG+CGG - chr6_4:6975824-6975843 None:intergenic 45.0%
GACGGTGTTTGTACACTGTT+TGG - chr6_4:6975827-6975846 None:intergenic 45.0%
GATCCTGAGGTGGAAAAAAC+TGG - chr6_4:6975853-6975872 None:intergenic 45.0%
TAAGTAAATTGTGACGCCGC+TGG - chr6_4:6975875-6975894 None:intergenic 45.0%
ACTTATAGGCCATCTTTGCC+AGG + chr6_4:6975890-6975909 Msa0974100:CDS 45.0%
AACAGGTCGTACATTTGGCA+GGG - chr6_4:6975939-6975958 None:intergenic 45.0%
TAACAGGTCGTACATTTGGC+AGG - chr6_4:6975940-6975959 None:intergenic 45.0%
GGCATAACAGGTCGTACATT+TGG - chr6_4:6975944-6975963 None:intergenic 45.0%
TTGTTTCCGATTCTTTGGCC+TGG - chr6_4:6975977-6975996 None:intergenic 45.0%
!! AATGGACTAGGATTGGGATG+AGG - chr6_4:6976073-6976092 None:intergenic 45.0%
!! TGGCTTGGTACAAATGGACT+AGG - chr6_4:6976085-6976104 None:intergenic 45.0%
! TGACGAACCTTCAGAGTATC+TGG - chr6_4:6976317-6976336 None:intergenic 45.0%
GCTCGTCTTGGGATTTGAAT+CGG - chr6_4:6976400-6976419 None:intergenic 45.0%
GTCTCAGTTGGCAAAAAACC+TGG - chr6_4:6976557-6976576 None:intergenic 45.0%
! TTTTCCTCAGTGGTCTCAGT+TGG - chr6_4:6976569-6976588 None:intergenic 45.0%
TGATGAAGAGTTGGCTGTTC+CGG + chr6_4:6976595-6976614 Msa0974100:CDS 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6_4:6976722-6976741 Msa0974100:CDS 45.0%
! CCCGTCTGAAGATTTTGTGA+TGG + chr6_4:6976802-6976821 Msa0974100:CDS 45.0%
AAACATGACATAGAAGGCGG+CGG - chr6_4:6977225-6977244 None:intergenic 45.0%
ATAGATTGCAACACTAGGCG+TGG + chr6_4:6977271-6977290 Msa0974100:intron 45.0%
TGCTCGAAAAACATCAGCAC+TGG - chr6_4:6977388-6977407 None:intergenic 45.0%
AGGTGCCCTGCATATAAAGA+GGG - chr6_4:6977433-6977452 None:intergenic 45.0%
TAGGTGCCCTGCATATAAAG+AGG - chr6_4:6977434-6977453 None:intergenic 45.0%
TGGGATGGAGCAGTAATTAC+TGG + chr6_4:6977750-6977769 Msa0974100:three_prime_UTR 45.0%
GGGATGGAGCAGTAATTACT+GGG + chr6_4:6977751-6977770 Msa0974100:three_prime_UTR 45.0%
GGATGGAGCAGTAATTACTG+GGG + chr6_4:6977752-6977771 Msa0974100:three_prime_UTR 45.0%
AGCAGTAATTACTGGGGACA+TGG + chr6_4:6977758-6977777 Msa0974100:three_prime_UTR 45.0%
AATTACTGGGGACATGGCAA+AGG + chr6_4:6977764-6977783 Msa0974100:three_prime_UTR 45.0%
!!! ATAATATATCTAATTTTTAA+AGG + chr6_4:6972741-6972760 Msa0974100:intron 5.0%
!! AATTTAAAAAAAAAAAACTT+AGG - chr6_4:6976207-6976226 None:intergenic 5.0%
AAGCCTTGAATCGACCAACG+AGG - chr6_4:6971688-6971707 None:intergenic 50.0%
GGTTGCGAATTTCTCAACCG+AGG - chr6_4:6971737-6971756 None:intergenic 50.0%
TCACAAATCGCGGAAAACGG+TGG - chr6_4:6972439-6972458 None:intergenic 50.0%
ATGGGGTTTATGGCCTATGG+TGG + chr6_4:6972628-6972647 Msa0974100:intron 50.0%
ACCATGTTGTACTGCCTTGG+TGG + chr6_4:6972694-6972713 Msa0974100:intron 50.0%
! GATAAGTGGTGATGAGGCCT+GGG - chr6_4:6973387-6973406 None:intergenic 50.0%
! TGATAAGTGGTGATGAGGCC+TGG - chr6_4:6973388-6973407 None:intergenic 50.0%
TAACCTACTTCGGGTAGACG+CGG - chr6_4:6974088-6974107 None:intergenic 50.0%
GTATGCCACGCAGAAAACCT+AGG - chr6_4:6974176-6974195 None:intergenic 50.0%
TGCGACATCTCTTTGGTACC+TGG + chr6_4:6974227-6974246 Msa0974100:CDS 50.0%
! AGGAGGGAAGACTTTTGACC+AGG - chr6_4:6974248-6974267 None:intergenic 50.0%
GAGGAGATTCAGAAGCCCTA+AGG - chr6_4:6974345-6974364 None:intergenic 50.0%
GAATCTCCTCGACCAACTCA+TGG + chr6_4:6974355-6974374 Msa0974100:CDS 50.0%
!! TGTATCCCATGAGTTGGTCG+AGG - chr6_4:6974364-6974383 None:intergenic 50.0%
GTTTCATCCTCACAGGTTGC+AGG + chr6_4:6974867-6974886 Msa0974100:intron 50.0%
GACGTGGTTGTCCGTTACTA+AGG - chr6_4:6975214-6975233 None:intergenic 50.0%
TCCAGCCGCTCAACTAACAA+AGG - chr6_4:6975302-6975321 None:intergenic 50.0%
GTTGAGCGGCTGGATAGAAA+TGG + chr6_4:6975308-6975327 Msa0974100:CDS 50.0%
GCGGCTGGATAGAAATGGTA+TGG + chr6_4:6975313-6975332 Msa0974100:CDS 50.0%
CTGAAGAGGAGGAGTTCGAT+TGG + chr6_4:6975366-6975385 Msa0974100:CDS 50.0%
AGTCCTGCAGTAGTAGACCA+TGG + chr6_4:6975398-6975417 Msa0974100:CDS 50.0%
CTACCATGGTCTACTACTGC+AGG - chr6_4:6975404-6975423 None:intergenic 50.0%
!! GCATTGGCTGCAACAGTAAC+AGG - chr6_4:6975473-6975492 None:intergenic 50.0%
!! TCAGTGTCAAGGGTGTTTCC+TGG + chr6_4:6975500-6975519 Msa0974100:CDS 50.0%
AAAGCTGCAGGCAAAACTGG+TGG - chr6_4:6975551-6975570 None:intergenic 50.0%
CAGCTACCTAATCAGCTTCC+TGG + chr6_4:6975782-6975801 Msa0974100:CDS 50.0%
! TTTTCCACCTCAGGATCCAG+CGG + chr6_4:6975856-6975875 Msa0974100:CDS 50.0%
ACAGGTCGTACATTTGGCAG+GGG - chr6_4:6975938-6975957 None:intergenic 50.0%
CGATTCTTTGGCCTGGCAAA+GGG - chr6_4:6975970-6975989 None:intergenic 50.0%
CCTTTGCCAGGCCAAAGAAT+CGG + chr6_4:6975968-6975987 Msa0974100:CDS 50.0%
ATTGGGATGAGGTGGCATCT+GGG - chr6_4:6976062-6976081 None:intergenic 50.0%
!! GGCTGTTGGCTTGGTACAAA+TGG - chr6_4:6976091-6976110 None:intergenic 50.0%
GGCCCAAGGTGTAATCTCAT+TGG + chr6_4:6976147-6976166 Msa0974100:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6_4:6976374-6976393 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6_4:6976371-6976390 Msa0974100:CDS 50.0%
CGTCTTGGGATTTGAATCGG+AGG - chr6_4:6976397-6976416 None:intergenic 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6_4:6976417-6976436 Msa0974100:CDS 50.0%
TACGAGAGGGCTTCTGCTTA+CGG - chr6_4:6976472-6976491 None:intergenic 50.0%
AGCAGAAGCCCTCTCGTAAA+TGG + chr6_4:6976474-6976493 Msa0974100:CDS 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6_4:6976495-6976514 Msa0974100:CDS 50.0%
AGTGAGACGATGTGGCTTAG+TGG + chr6_4:6976503-6976522 Msa0974100:CDS 50.0%
!! CTTAGTGGTGCAGAGGCATT+GGG + chr6_4:6976518-6976537 Msa0974100:CDS 50.0%
TTTGCCAACTGAGACCACTG+AGG + chr6_4:6976562-6976581 Msa0974100:CDS 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6_4:6976672-6976691 Msa0974100:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6_4:6976683-6976702 Msa0974100:CDS 50.0%
GGCATAGACAGGTCACAGTT+AGG + chr6_4:6976743-6976762 Msa0974100:CDS 50.0%
TGCGGGAGAGATCCAGAATT+CGG + chr6_4:6977094-6977113 Msa0974100:intron 50.0%
! ATGCAGGGCACCTATGAAGA+AGG + chr6_4:6977440-6977459 Msa0974100:intron 50.0%
!! CCAACGAGGATTGATGGTGG+AGG - chr6_4:6971674-6971693 None:intergenic 55.0%
CCTCCACCATCAATCCTCGT+TGG + chr6_4:6971671-6971690 Msa0974100:CDS 55.0%
CGACCAACGAGGATTGATGG+TGG - chr6_4:6971677-6971696 None:intergenic 55.0%
GCCACCAAGGCAGTACAACA+TGG - chr6_4:6972698-6972717 None:intergenic 55.0%
! GTCTGCCTAGGTTTTCTGCG+TGG + chr6_4:6974168-6974187 Msa0974100:intron 55.0%
CCTTTCACCTGCAACCTGTG+AGG - chr6_4:6974877-6974896 None:intergenic 55.0%
CCTCACAGGTTGCAGGTGAA+AGG + chr6_4:6974874-6974893 Msa0974100:intron 55.0%
!! TGGTCGCGAAAGCCGTTTTC+TGG + chr6_4:6975149-6975168 Msa0974100:CDS 55.0%
GCCTTTGTTAGTTGAGCGGC+TGG + chr6_4:6975298-6975317 Msa0974100:CDS 55.0%
CTGCAGGCAAAACTGGTGGA+CGG - chr6_4:6975547-6975566 None:intergenic 55.0%
AGGCCATCTTTGCCAGGACA+TGG + chr6_4:6975896-6975915 Msa0974100:CDS 55.0%
GGACCATGTCCTGGCAAAGA+TGG - chr6_4:6975902-6975921 None:intergenic 55.0%
CTCATAGCAGGACCATGTCC+TGG - chr6_4:6975911-6975930 None:intergenic 55.0%
CAGGTCGTACATTTGGCAGG+GGG - chr6_4:6975937-6975956 None:intergenic 55.0%
GGCAAAGGGAGTGGCATAAC+AGG - chr6_4:6975956-6975975 None:intergenic 55.0%
GTTATGCCACTCCCTTTGCC+AGG + chr6_4:6975956-6975975 Msa0974100:CDS 55.0%
CCGATTCTTTGGCCTGGCAA+AGG - chr6_4:6975971-6975990 None:intergenic 55.0%
TTGCGACCTTTACCTCCACC+TGG + chr6_4:6976022-6976041 Msa0974100:CDS 55.0%
GATTGGGATGAGGTGGCATC+TGG - chr6_4:6976063-6976082 None:intergenic 55.0%
GGACTAGGATTGGGATGAGG+TGG - chr6_4:6976070-6976089 None:intergenic 55.0%
! CCAACAGTTGGCTGTTGGCT+TGG - chr6_4:6976100-6976119 None:intergenic 55.0%
CCAAGCCAACAGCCAACTGT+TGG + chr6_4:6976097-6976116 Msa0974100:CDS 55.0%
GGCTAATCAAGCCCCTTCAC+AGG + chr6_4:6976168-6976187 Msa0974100:CDS 55.0%
GTGACTGCTGTGCTCGTCTT+GGG - chr6_4:6976411-6976430 None:intergenic 55.0%
TGTGACTGCTGTGCTCGTCT+TGG - chr6_4:6976412-6976431 None:intergenic 55.0%
AGACGAGCACAGCAGTCACA+TGG + chr6_4:6976412-6976431 Msa0974100:CDS 55.0%
GATGTGGCTTAGTGGTGCAG+AGG + chr6_4:6976511-6976530 Msa0974100:CDS 55.0%
! GCTTAGTGGTGCAGAGGCAT+TGG + chr6_4:6976517-6976536 Msa0974100:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6_4:6976617-6976636 None:intergenic 55.0%
ACCAGTTCGCGTTCTCTCCC+AGG + chr6_4:6973367-6973386 Msa0974100:intron 60.0%
TCACCGCGTCTACCCGAAGT+AGG + chr6_4:6974082-6974101 Msa0974100:intron 60.0%
GGAGTTATGCTGGGAGGACG+TGG - chr6_4:6975605-6975624 None:intergenic 60.0%
GGCAGGGGGTTACTCATAGC+AGG - chr6_4:6975923-6975942 None:intergenic 60.0%
CTTTGGCCTGGCAAAGGGAG+TGG - chr6_4:6975965-6975984 None:intergenic 60.0%
AAGGTCGCAAAGCTCCTCCC+TGG - chr6_4:6976012-6976031 None:intergenic 60.0%
TGTGGGCCAGGTGGAGGTAA+AGG - chr6_4:6976031-6976050 None:intergenic 60.0%
! GCATCTGGGATGGAGCGTGT+GGG - chr6_4:6976048-6976067 None:intergenic 60.0%
GGATGAGGTGGCATCTGGGA+TGG - chr6_4:6976058-6976077 None:intergenic 60.0%
TTGGGAGCCGAATCAGCTCC+AGG + chr6_4:6976536-6976555 Msa0974100:CDS 60.0%
GCCTGGGAGAGAACGCGAAC+TGG - chr6_4:6973371-6973390 None:intergenic 65.0%
TGTGACGCCGCTGGATCCTG+AGG - chr6_4:6975866-6975885 None:intergenic 65.0%
! GGCATCTGGGATGGAGCGTG+TGG - chr6_4:6976049-6976068 None:intergenic 65.0%
GACGCCGCTGGATCCTGAGG+TGG - chr6_4:6975863-6975882 None:intergenic 70.0%
GATGGAGCGTGTGGGCCAGG+TGG - chr6_4:6976040-6976059 None:intergenic 70.0%
TGGGATGGAGCGTGTGGGCC+AGG - chr6_4:6976043-6976062 None:intergenic 70.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6_4:6976604-6976623 Msa0974100:CDS 70.0%
GGAGCGTGTGGGCCAGGTGG+AGG - chr6_4:6976037-6976056 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 6971466 6977884 6971466 ID=Msa0974100;Name=Msa0974100
chr6_4 mRNA 6971466 6977884 6971466 ID=Msa0974100-mRNA-1;Parent=Msa0974100;Name=Msa0974100-mRNA-1;_AED=0.14;_eAED=0.14;_QI=181|1|1|1|1|1|6|394|840
chr6_4 exon 6971466 6971910 6971466 ID=Msa0974100-mRNA-1:exon:2762;Parent=Msa0974100-mRNA-1
chr6_4 exon 6973998 6974099 6973998 ID=Msa0974100-mRNA-1:exon:2763;Parent=Msa0974100-mRNA-1
chr6_4 exon 6974178 6974438 6974178 ID=Msa0974100-mRNA-1:exon:2764;Parent=Msa0974100-mRNA-1
chr6_4 exon 6974882 6976189 6974882 ID=Msa0974100-mRNA-1:exon:2765;Parent=Msa0974100-mRNA-1
chr6_4 exon 6976290 6976832 6976290 ID=Msa0974100-mRNA-1:exon:2766;Parent=Msa0974100-mRNA-1
chr6_4 exon 6977446 6977884 6977446 ID=Msa0974100-mRNA-1:exon:2767;Parent=Msa0974100-mRNA-1
chr6_4 five_prime_UTR 6971466 6971646 6971466 ID=Msa0974100-mRNA-1:five_prime_utr;Parent=Msa0974100-mRNA-1
chr6_4 CDS 6971647 6971910 6971647 ID=Msa0974100-mRNA-1:cds;Parent=Msa0974100-mRNA-1
chr6_4 CDS 6973998 6974099 6973998 ID=Msa0974100-mRNA-1:cds;Parent=Msa0974100-mRNA-1
chr6_4 CDS 6974178 6974438 6974178 ID=Msa0974100-mRNA-1:cds;Parent=Msa0974100-mRNA-1
chr6_4 CDS 6974882 6976189 6974882 ID=Msa0974100-mRNA-1:cds;Parent=Msa0974100-mRNA-1
chr6_4 CDS 6976290 6976832 6976290 ID=Msa0974100-mRNA-1:cds;Parent=Msa0974100-mRNA-1
chr6_4 CDS 6977446 6977490 6977446 ID=Msa0974100-mRNA-1:cds;Parent=Msa0974100-mRNA-1
chr6_4 three_prime_UTR 6977491 6977884 6977491 ID=Msa0974100-mRNA-1:three_prime_utr;Parent=Msa0974100-mRNA-1
Gene Sequence

>Msa0974100

ATGAGCAATGAGATTGTTCAAAAGCCTCCACCATCAATCCTCGTTGGTCGATTCAAGGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTCGGTTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCACCGCGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATCCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCTTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTCGGTCTTCTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCTTCGTCACCACCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATTTAGCTGACAATTCTACTGGTAGGACAGTTGAGAGAGAATCTCCCCATCATGCTGTTGATTATGGCCTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGTCGCGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGACAACCACGTCAAAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCTGCAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATCGGTTTCTCATCAGAAAAGCCTGTTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCACCAGTTTTGCCTGCAGCTTTTGAAATGAGGCACTCCGTAAATGTGCATGCTCCACGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCCAATAGTACCATTGTGAGTCATGGTCTAATTAATAGACCTTTTCCTGTGCATGAACAATCGTTGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCGGCGTCACAATTTACTTATAGGCCATCTTTGCCAGGACATGGTCCTGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGAGGAGCTTTGCGACCTTTACCTCCACCTGGCCCACACGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGATACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCCGAATCAGCTCCAGGTTTTTTGCCAACTGAGACCACTGAGGAAAAGAAAGATGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACCCCGTCTGAAGATTTTGTGATGGACGAAGGGGGCACCTATGAAGAAGGCAGTCAAAGAAAACGAATGCGGAGCTGA
Protein sequence

>Msa0974100

MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSPRLPEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTVGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEELSEWSRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPAVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRPPVLPAAFEMRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVSHGLINRPFPVHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHAPSQMPPHPNPSPFVPSQQPTVGYSNLINSLMAQGVISLANQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKDDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPIIHAKCRSESTPSEDFVMDEGGTYEEGSQRKRMRS*