Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0906190 | XP_013468204.1 | 73.067 | 401 | 95 | 5 | 4 | 394 | 3 | 400 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0906190 | Msa0938200 | 0.807165 | 5.774837e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0906190 | MtrunA17_Chr1g0181301 | 73.067 | 401 | 95 | 5 | 4 | 394 | 3 | 400 | 0.0 | 590 |
| Msa0906190 | MtrunA17_Chr5g0415931 | 52.417 | 393 | 167 | 8 | 5 | 393 | 6 | 382 | 7.23e-140 | 404 |
| Msa0906190 | MtrunA17_Chr5g0415901 | 46.154 | 390 | 143 | 8 | 5 | 392 | 4 | 328 | 2.33e-112 | 332 |
| Msa0906190 | MtrunA17_Chr1g0208731 | 42.965 | 398 | 167 | 11 | 1 | 392 | 1 | 344 | 2.37e-84 | 260 |
| Msa0906190 | MtrunA17_Chr5g0437231 | 47.619 | 315 | 136 | 9 | 5 | 318 | 4 | 290 | 2.32e-80 | 248 |
| Msa0906190 | MtrunA17_Chr7g0247731 | 40.476 | 420 | 172 | 16 | 1 | 394 | 1 | 368 | 1.20e-72 | 231 |
| Msa0906190 | MtrunA17_Chr7g0247701 | 40.049 | 412 | 185 | 17 | 1 | 392 | 1 | 370 | 2.50e-72 | 231 |
| Msa0906190 | MtrunA17_Chr7g0247721 | 39.486 | 428 | 169 | 18 | 1 | 394 | 39 | 410 | 1.80e-69 | 224 |
| Msa0906190 | MtrunA17_Chr5g0437241 | 42.105 | 285 | 131 | 6 | 80 | 361 | 1 | 254 | 2.17e-61 | 198 |
| Msa0906190 | MtrunA17_Chr6g0459631 | 78.571 | 112 | 20 | 1 | 117 | 224 | 41 | 152 | 5.60e-53 | 175 |
| Msa0906190 | MtrunA17_Chr6g0459631 | 83.871 | 62 | 10 | 0 | 333 | 394 | 149 | 210 | 8.29e-32 | 119 |
| Msa0906190 | MtrunA17_Chr7g0246641 | 42.671 | 307 | 129 | 14 | 95 | 394 | 4 | 270 | 7.13e-50 | 169 |
| Msa0906190 | MtrunA17_Chr1g0151451 | 44.279 | 201 | 85 | 5 | 1 | 190 | 1 | 185 | 2.05e-42 | 148 |
| Msa0906190 | MtrunA17_Chr3g0143621 | 26.992 | 389 | 230 | 17 | 3 | 366 | 21 | 380 | 3.02e-23 | 100 |
| Msa0906190 | MtrunA17_Chr7g0246651 | 36.517 | 178 | 93 | 6 | 95 | 263 | 45 | 211 | 8.95e-23 | 95.5 |
| Msa0906190 | MtrunA17_Chr3g0143611 | 27.250 | 400 | 229 | 20 | 3 | 389 | 2 | 352 | 4.65e-22 | 96.3 |
| Msa0906190 | MtrunA17_Chr7g0246661 | 37.594 | 133 | 65 | 3 | 176 | 301 | 8 | 129 | 5.38e-15 | 71.6 |
| Msa0906190 | MtrunA17_Chr8g0371101 | 26.316 | 399 | 212 | 19 | 2 | 366 | 3 | 353 | 1.50e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCGGCTTCGTATTT+TGG | 0.208690 | 6_2:+4755287 | Msa0906190:CDS |
| AATGTTAAAGCTTGATAGTT+TGG | 0.243559 | 6_2:+4755226 | Msa0906190:CDS |
| TAAAAGCTGGACAAAAGTTT+TGG | 0.251379 | 6_2:+4754853 | Msa0906190:CDS |
| TATGTTGTAGTTGCAATTTA+TGG | 0.256703 | 6_2:+4754807 | Msa0906190:CDS |
| TAGGGTTATAATTGTAAGTT+TGG | 0.256944 | 6_2:-4754646 | None:intergenic |
| CCACAAAGCCTCTTGTTATA+AGG | 0.264739 | 6_2:-4754585 | None:intergenic |
| TGGATTGTAAGGAAATTTAT+TGG | 0.267743 | 6_2:+4755092 | Msa0906190:CDS |
| TGTTATAAGGGAGTGGTAAT+TGG | 0.273748 | 6_2:-4754572 | None:intergenic |
| TTCATATCAAATGGTCCATT+AGG | 0.289459 | 6_2:-4755377 | None:intergenic |
| TATCGGCAAATCCTACAATT+AGG | 0.290712 | 6_2:+4754775 | Msa0906190:CDS |
| CTAACTCTTCTATATATATC+TGG | 0.344601 | 6_2:-4754720 | None:intergenic |
| TCATATCAAATGGTCCATTA+GGG | 0.347171 | 6_2:-4755376 | None:intergenic |
| GTCAATGGAGGCAGTAGATT+GGG | 0.349372 | 6_2:+4754320 | None:intergenic |
| ATATATATCTGGCATGTAGA+TGG | 0.350445 | 6_2:-4754709 | None:intergenic |
| CGAAGTGTATAAGTTGGAAT+TGG | 0.356208 | 6_2:+4755178 | Msa0906190:CDS |
| AGAACAAAGAGATGTTTATA+TGG | 0.371045 | 6_2:+4754522 | Msa0906190:CDS |
| CCTTATAACAAGAGGCTTTG+TGG | 0.380145 | 6_2:+4754585 | Msa0906190:CDS |
| ATGTTAAAGCTTGATAGTTT+GGG | 0.382709 | 6_2:+4755227 | Msa0906190:CDS |
| TCCTAATGTTGTTTCACCAT+GGG | 0.397638 | 6_2:+4755016 | Msa0906190:CDS |
| AGGGAGACTTGTGGATTGTA+AGG | 0.412036 | 6_2:+4755081 | Msa0906190:CDS |
| AGCTATTATTCCCACTGAAA+TGG | 0.414384 | 6_2:-4755491 | None:intergenic |
| TTTGTGGTTCAAGTCATGGC+TGG | 0.414828 | 6_2:+4754601 | Msa0906190:CDS |
| CACAAAGCCTCTTGTTATAA+GGG | 0.423159 | 6_2:-4754584 | None:intergenic |
| TCAGCGTGGTATGCAAGAAT+TGG | 0.424757 | 6_2:+4754412 | Msa0906190:CDS |
| TGTCAATGGAGGCAGTAGAT+TGG | 0.445882 | 6_2:+4754319 | None:intergenic |
| TTATGAATGTAACGTTCATA+AGG | 0.448018 | 6_2:+4754746 | Msa0906190:CDS |
| TGTCTTGCTTTCATAAAAGC+TGG | 0.450654 | 6_2:+4754840 | Msa0906190:CDS |
| GAACAAAGAGATGTTTATAT+GGG | 0.454874 | 6_2:+4754523 | Msa0906190:CDS |
| AAAATCTATAATGTAAAAGA+TGG | 0.455567 | 6_2:+4755398 | Msa0906190:CDS |
| GTTCACACGGATGCCACCTT+CGG | 0.463341 | 6_2:+4755454 | Msa0906190:CDS |
| TAATCGTGAGGCCTAATTGT+AGG | 0.471723 | 6_2:-4754786 | None:intergenic |
| AAGATTCGAAGTGTATAAGT+TGG | 0.476468 | 6_2:+4755172 | Msa0906190:CDS |
| GCACCGGATCCTTACCCTAA+TGG | 0.478062 | 6_2:+4755362 | Msa0906190:CDS |
| CCCCATGGTGAAACAACATT+AGG | 0.481080 | 6_2:-4755017 | None:intergenic |
| TTGTGGTTCAAGTCATGGCT+GGG | 0.496054 | 6_2:+4754602 | Msa0906190:CDS |
| AGCATTGCAATTTCGAACAT+TGG | 0.498979 | 6_2:+4755432 | Msa0906190:CDS |
| TCATCATCAGTGTCATCATC+GGG | 0.504068 | 6_2:-4755119 | None:intergenic |
| AGGCTTTGTGGTTCAAGTCA+TGG | 0.511865 | 6_2:+4754597 | Msa0906190:CDS |
| TTCATCATCAGTGTCATCAT+CGG | 0.513248 | 6_2:-4755120 | None:intergenic |
| GGCATGTAGATGGGTGGTAG+AGG | 0.516014 | 6_2:-4754699 | None:intergenic |
| TTGATAACTAAACTTTGCAA+TGG | 0.525381 | 6_2:-4754439 | None:intergenic |
| AAGGGAGTGGTAATTGGAAG+TGG | 0.531731 | 6_2:-4754566 | None:intergenic |
| TAATGTTGTTTCACCATGGG+GGG | 0.533333 | 6_2:+4755019 | Msa0906190:CDS |
| CACGGATGCCACCTTCGGTG+TGG | 0.534966 | 6_2:+4755459 | Msa0906190:CDS |
| TAGTCTATGCTGCGGGACGA+TGG | 0.540068 | 6_2:+4754931 | Msa0906190:CDS |
| TCAAATGGTCCATTAGGGTA+AGG | 0.543154 | 6_2:-4755371 | None:intergenic |
| TTCCTAATGTTGTTTCACCA+TGG | 0.544368 | 6_2:+4755015 | Msa0906190:CDS |
| GGGTTCTTCCGCCATTTCAG+TGG | 0.545118 | 6_2:+4755480 | Msa0906190:CDS |
| GGTTCTTCCGCCATTTCAGT+GGG | 0.545364 | 6_2:+4755481 | Msa0906190:CDS |
| TACCACTCCCTTATAACAAG+AGG | 0.545416 | 6_2:+4754577 | Msa0906190:CDS |
| ACGGATGCCACCTTCGGTGT+GGG | 0.551054 | 6_2:+4755460 | Msa0906190:CDS |
| AGCCTCTTGTTATAAGGGAG+TGG | 0.552882 | 6_2:-4754579 | None:intergenic |
| TATATATCTGGCATGTAGAT+GGG | 0.560379 | 6_2:-4754708 | None:intergenic |
| GTAGATGGGTGGTAGAGGGA+TGG | 0.563925 | 6_2:-4754694 | None:intergenic |
| TCATGGCTGGGTAGCAAAGG+TGG | 0.565480 | 6_2:+4754614 | Msa0906190:CDS |
| TGATTATTTCGAAGAAGCAC+CGG | 0.570964 | 6_2:+4755346 | Msa0906190:CDS |
| GGAAGAACCCACACCGAAGG+TGG | 0.579383 | 6_2:-4755467 | None:intergenic |
| AAGTCATGGCTGGGTAGCAA+AGG | 0.579727 | 6_2:+4754611 | Msa0906190:CDS |
| GGTCCATTAGGGTAAGGATC+CGG | 0.584997 | 6_2:-4755365 | None:intergenic |
| AAAGGGTTAGTCTATGCTGC+GGG | 0.586027 | 6_2:+4754924 | Msa0906190:CDS |
| TAGTGATTCTGTATCTATGT+CGG | 0.590343 | 6_2:+4755274 | Msa0906190:CDS |
| AATCATTGGAGGGAGACTTG+TGG | 0.595580 | 6_2:+4755072 | Msa0906190:CDS |
| CCTAATGTTGTTTCACCATG+GGG | 0.597547 | 6_2:+4755017 | Msa0906190:CDS |
| GCATGTAGATGGGTGGTAGA+GGG | 0.597842 | 6_2:-4754698 | None:intergenic |
| ATTTCGAACATTGGTTCACA+CGG | 0.602276 | 6_2:+4755441 | Msa0906190:CDS |
| GATAGTAACTTGCCTAGTAG+TGG | 0.603948 | 6_2:+4755143 | Msa0906190:CDS |
| TCAATGGAGGCAGTAGATTG+GGG | 0.615269 | 6_2:+4754321 | None:intergenic |
| GGCGGAAGAACCCACACCGA+AGG | 0.621085 | 6_2:-4755470 | None:intergenic |
| TGCTTCTTCGAAATAATCAT+CGG | 0.622108 | 6_2:-4755342 | None:intergenic |
| TAAAGGGTTAGTCTATGCTG+CGG | 0.625231 | 6_2:+4754923 | Msa0906190:CDS |
| TATTATTCCCACTGAAATGG+CGG | 0.639125 | 6_2:-4755488 | None:intergenic |
| TTGGAATTGGATCTTCAAAG+TGG | 0.643699 | 6_2:+4755191 | Msa0906190:CDS |
| CTAATGTTGTTTCACCATGG+GGG | 0.657132 | 6_2:+4755018 | Msa0906190:CDS |
| CGATCACATTTATTTCAGCG+TGG | 0.681214 | 6_2:+4754398 | Msa0906190:CDS |
| ATATCTGGCATGTAGATGGG+TGG | 0.682216 | 6_2:-4754705 | None:intergenic |
| GCAACTACAACATAATCGTG+AGG | 0.708433 | 6_2:-4754798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTGATGTTATATTTTATAA+AGG | + | chr6_2:4754906-4754925 | Msa0906190:CDS | 15.0% |
| !!! | GTGATGTTATATTTTATAAA+GGG | + | chr6_2:4754907-4754926 | Msa0906190:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | - | chr6_2:4755389-4755408 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | + | chr6_2:4755398-4755417 | Msa0906190:CDS | 15.0% |
| !!! | AGTGATGTTATATTTTATAA+AGG | + | chr6_2:4754906-4754925 | Msa0906190:CDS | 15.0% |
| !!! | GTGATGTTATATTTTATAAA+GGG | + | chr6_2:4754907-4754926 | Msa0906190:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | - | chr6_2:4755389-4755408 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | + | chr6_2:4755398-4755417 | Msa0906190:CDS | 15.0% |
| !! | TTGTTAAAAATCAAACTAAG+AGG | - | chr6_2:4754363-4754382 | None:intergenic | 20.0% |
| !!! | CTAATACATTGTTTTTGATT+TGG | - | chr6_2:4754470-4754489 | None:intergenic | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | + | chr6_2:4755304-4755323 | Msa0906190:CDS | 20.0% |
| !! | TTGTTAAAAATCAAACTAAG+AGG | - | chr6_2:4754363-4754382 | None:intergenic | 20.0% |
| !!! | CTAATACATTGTTTTTGATT+TGG | - | chr6_2:4754470-4754489 | None:intergenic | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | + | chr6_2:4755304-4755323 | Msa0906190:CDS | 20.0% |
| !! | TTGATAACTAAACTTTGCAA+TGG | - | chr6_2:4754442-4754461 | None:intergenic | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | + | chr6_2:4754522-4754541 | Msa0906190:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | + | chr6_2:4754523-4754542 | Msa0906190:CDS | 25.0% |
| ! | TAGGGTTATAATTGTAAGTT+TGG | - | chr6_2:4754649-4754668 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | - | chr6_2:4754667-4754686 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | - | chr6_2:4754678-4754697 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | - | chr6_2:4754723-4754742 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | + | chr6_2:4754746-4754765 | Msa0906190:CDS | 25.0% |
| !!! | CGTTCATAAGGTTATTTTAT+CGG | + | chr6_2:4754758-4754777 | Msa0906190:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | + | chr6_2:4754807-4754826 | Msa0906190:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | + | chr6_2:4754968-4754987 | Msa0906190:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | + | chr6_2:4755058-4755077 | Msa0906190:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | + | chr6_2:4755061-4755080 | Msa0906190:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | + | chr6_2:4755062-4755081 | Msa0906190:CDS | 25.0% |
| ! | TGGATTGTAAGGAAATTTAT+TGG | + | chr6_2:4755092-4755111 | Msa0906190:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | + | chr6_2:4755226-4755245 | Msa0906190:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | + | chr6_2:4755227-4755246 | Msa0906190:CDS | 25.0% |
| !! | TTGATAACTAAACTTTGCAA+TGG | - | chr6_2:4754442-4754461 | None:intergenic | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | + | chr6_2:4754522-4754541 | Msa0906190:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | + | chr6_2:4754523-4754542 | Msa0906190:CDS | 25.0% |
| ! | TAGGGTTATAATTGTAAGTT+TGG | - | chr6_2:4754649-4754668 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | - | chr6_2:4754667-4754686 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | - | chr6_2:4754678-4754697 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | - | chr6_2:4754723-4754742 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | + | chr6_2:4754746-4754765 | Msa0906190:CDS | 25.0% |
| !!! | CGTTCATAAGGTTATTTTAT+CGG | + | chr6_2:4754758-4754777 | Msa0906190:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | + | chr6_2:4754807-4754826 | Msa0906190:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | + | chr6_2:4754968-4754987 | Msa0906190:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | + | chr6_2:4755058-4755077 | Msa0906190:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | + | chr6_2:4755061-4755080 | Msa0906190:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | + | chr6_2:4755062-4755081 | Msa0906190:CDS | 25.0% |
| ! | TGGATTGTAAGGAAATTTAT+TGG | + | chr6_2:4755092-4755111 | Msa0906190:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | + | chr6_2:4755226-4755245 | Msa0906190:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | + | chr6_2:4755227-4755246 | Msa0906190:CDS | 25.0% |
| TAATGATTCCCACAAAAAGA+AGG | + | chr6_2:4754496-4754515 | Msa0906190:CDS | 30.0% | |
| ! | TTGGAAGTGGTAAATTTTGT+TGG | - | chr6_2:4754556-4754575 | None:intergenic | 30.0% |
| !! | GATTTTTGAAGGGATTTAGT+AGG | - | chr6_2:4754668-4754687 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | - | chr6_2:4754679-4754698 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | - | chr6_2:4754711-4754730 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | - | chr6_2:4754712-4754731 | None:intergenic | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | + | chr6_2:4754853-4754872 | Msa0906190:CDS | 30.0% |
| ! | AATCTTTTAGTACCACTACT+AGG | - | chr6_2:4755158-4755177 | None:intergenic | 30.0% |
| AAGATTCGAAGTGTATAAGT+TGG | + | chr6_2:4755172-4755191 | Msa0906190:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | + | chr6_2:4755248-4755267 | Msa0906190:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | + | chr6_2:4755274-4755293 | Msa0906190:CDS | 30.0% | |
| TGCTTCTTCGAAATAATCAT+CGG | - | chr6_2:4755345-4755364 | None:intergenic | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | - | chr6_2:4755379-4755398 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | - | chr6_2:4755380-4755399 | None:intergenic | 30.0% | |
| TAATGATTCCCACAAAAAGA+AGG | + | chr6_2:4754496-4754515 | Msa0906190:CDS | 30.0% | |
| ! | TTGGAAGTGGTAAATTTTGT+TGG | - | chr6_2:4754556-4754575 | None:intergenic | 30.0% |
| !! | GATTTTTGAAGGGATTTAGT+AGG | - | chr6_2:4754668-4754687 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | - | chr6_2:4754679-4754698 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | - | chr6_2:4754711-4754730 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | - | chr6_2:4754712-4754731 | None:intergenic | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | + | chr6_2:4754853-4754872 | Msa0906190:CDS | 30.0% |
| ! | AATCTTTTAGTACCACTACT+AGG | - | chr6_2:4755158-4755177 | None:intergenic | 30.0% |
| AAGATTCGAAGTGTATAAGT+TGG | + | chr6_2:4755172-4755191 | Msa0906190:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | + | chr6_2:4755248-4755267 | Msa0906190:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | + | chr6_2:4755274-4755293 | Msa0906190:CDS | 30.0% | |
| TGCTTCTTCGAAATAATCAT+CGG | - | chr6_2:4755345-4755364 | None:intergenic | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | - | chr6_2:4755379-4755398 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | - | chr6_2:4755380-4755399 | None:intergenic | 30.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | - | chr6_2:4754507-4754526 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | - | chr6_2:4754508-4754527 | None:intergenic | 35.0% |
| TGTTATAAGGGAGTGGTAAT+TGG | - | chr6_2:4754575-4754594 | None:intergenic | 35.0% | |
| ! | CACAAAGCCTCTTGTTATAA+GGG | - | chr6_2:4754587-4754606 | None:intergenic | 35.0% |
| TATCGGCAAATCCTACAATT+AGG | + | chr6_2:4754775-4754794 | Msa0906190:CDS | 35.0% | |
| TGTCTTGCTTTCATAAAAGC+TGG | + | chr6_2:4754840-4754859 | Msa0906190:CDS | 35.0% | |
| !! | TTCCTAATGTTGTTTCACCA+TGG | + | chr6_2:4755015-4755034 | Msa0906190:CDS | 35.0% |
| !! | TCCTAATGTTGTTTCACCAT+GGG | + | chr6_2:4755016-4755035 | Msa0906190:CDS | 35.0% |
| TTCATCATCAGTGTCATCAT+CGG | - | chr6_2:4755123-4755142 | None:intergenic | 35.0% | |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr6_2:4755178-4755197 | Msa0906190:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | + | chr6_2:4755191-4755210 | Msa0906190:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | + | chr6_2:4755247-4755266 | Msa0906190:CDS | 35.0% |
| ! | TGATTATTTCGAAGAAGCAC+CGG | + | chr6_2:4755346-4755365 | Msa0906190:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | + | chr6_2:4755432-4755451 | Msa0906190:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | + | chr6_2:4755441-4755460 | Msa0906190:CDS | 35.0% |
| ! | GTTCTACACCTTCTTTTTGT+GGG | - | chr6_2:4754507-4754526 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | - | chr6_2:4754508-4754527 | None:intergenic | 35.0% |
| TGTTATAAGGGAGTGGTAAT+TGG | - | chr6_2:4754575-4754594 | None:intergenic | 35.0% | |
| ! | CACAAAGCCTCTTGTTATAA+GGG | - | chr6_2:4754587-4754606 | None:intergenic | 35.0% |
| TATCGGCAAATCCTACAATT+AGG | + | chr6_2:4754775-4754794 | Msa0906190:CDS | 35.0% | |
| TGTCTTGCTTTCATAAAAGC+TGG | + | chr6_2:4754840-4754859 | Msa0906190:CDS | 35.0% | |
| !! | TTCCTAATGTTGTTTCACCA+TGG | + | chr6_2:4755015-4755034 | Msa0906190:CDS | 35.0% |
| !! | TCCTAATGTTGTTTCACCAT+GGG | + | chr6_2:4755016-4755035 | Msa0906190:CDS | 35.0% |
| TTCATCATCAGTGTCATCAT+CGG | - | chr6_2:4755123-4755142 | None:intergenic | 35.0% | |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr6_2:4755178-4755197 | Msa0906190:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | + | chr6_2:4755191-4755210 | Msa0906190:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | + | chr6_2:4755247-4755266 | Msa0906190:CDS | 35.0% |
| ! | TGATTATTTCGAAGAAGCAC+CGG | + | chr6_2:4755346-4755365 | Msa0906190:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | + | chr6_2:4755432-4755451 | Msa0906190:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | + | chr6_2:4755441-4755460 | Msa0906190:CDS | 35.0% |
| CGATCACATTTATTTCAGCG+TGG | + | chr6_2:4754398-4754417 | Msa0906190:CDS | 40.0% | |
| TACCACTCCCTTATAACAAG+AGG | + | chr6_2:4754577-4754596 | Msa0906190:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | - | chr6_2:4754588-4754607 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | + | chr6_2:4754585-4754604 | Msa0906190:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+AGG | - | chr6_2:4754789-4754808 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | - | chr6_2:4754801-4754820 | None:intergenic | 40.0% | |
| !! | TAAAGGGTTAGTCTATGCTG+CGG | + | chr6_2:4754923-4754942 | Msa0906190:CDS | 40.0% |
| !! | CCTAATGTTGTTTCACCATG+GGG | + | chr6_2:4755017-4755036 | Msa0906190:CDS | 40.0% |
| !! | CTAATGTTGTTTCACCATGG+GGG | + | chr6_2:4755018-4755037 | Msa0906190:CDS | 40.0% |
| !! | TAATGTTGTTTCACCATGGG+GGG | + | chr6_2:4755019-4755038 | Msa0906190:CDS | 40.0% |
| TCATCATCAGTGTCATCATC+GGG | - | chr6_2:4755122-4755141 | None:intergenic | 40.0% | |
| ! | GATAGTAACTTGCCTAGTAG+TGG | + | chr6_2:4755143-4755162 | Msa0906190:CDS | 40.0% |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | + | chr6_2:4755287-4755306 | Msa0906190:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | - | chr6_2:4755374-4755393 | None:intergenic | 40.0% | |
| CGATCACATTTATTTCAGCG+TGG | + | chr6_2:4754398-4754417 | Msa0906190:CDS | 40.0% | |
| TACCACTCCCTTATAACAAG+AGG | + | chr6_2:4754577-4754596 | Msa0906190:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | - | chr6_2:4754588-4754607 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | + | chr6_2:4754585-4754604 | Msa0906190:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+AGG | - | chr6_2:4754789-4754808 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | - | chr6_2:4754801-4754820 | None:intergenic | 40.0% | |
| !! | TAAAGGGTTAGTCTATGCTG+CGG | + | chr6_2:4754923-4754942 | Msa0906190:CDS | 40.0% |
| !! | CCTAATGTTGTTTCACCATG+GGG | + | chr6_2:4755017-4755036 | Msa0906190:CDS | 40.0% |
| !! | CTAATGTTGTTTCACCATGG+GGG | + | chr6_2:4755018-4755037 | Msa0906190:CDS | 40.0% |
| !! | TAATGTTGTTTCACCATGGG+GGG | + | chr6_2:4755019-4755038 | Msa0906190:CDS | 40.0% |
| TCATCATCAGTGTCATCATC+GGG | - | chr6_2:4755122-4755141 | None:intergenic | 40.0% | |
| ! | GATAGTAACTTGCCTAGTAG+TGG | + | chr6_2:4755143-4755162 | Msa0906190:CDS | 40.0% |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | + | chr6_2:4755287-4755306 | Msa0906190:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | - | chr6_2:4755374-4755393 | None:intergenic | 40.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | + | chr6_2:4754412-4754431 | Msa0906190:CDS | 45.0% | |
| AAGGGAGTGGTAATTGGAAG+TGG | - | chr6_2:4754569-4754588 | None:intergenic | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAG+TGG | - | chr6_2:4754582-4754601 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | + | chr6_2:4754597-4754616 | Msa0906190:CDS | 45.0% |
| TTTGTGGTTCAAGTCATGGC+TGG | + | chr6_2:4754601-4754620 | Msa0906190:CDS | 45.0% | |
| TTGTGGTTCAAGTCATGGCT+GGG | + | chr6_2:4754602-4754621 | Msa0906190:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | - | chr6_2:4754708-4754727 | None:intergenic | 45.0% | |
| !! | AAAGGGTTAGTCTATGCTGC+GGG | + | chr6_2:4754924-4754943 | Msa0906190:CDS | 45.0% |
| CCCCATGGTGAAACAACATT+AGG | - | chr6_2:4755020-4755039 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | + | chr6_2:4755072-4755091 | Msa0906190:CDS | 45.0% | |
| ! | AGGGAGACTTGTGGATTGTA+AGG | + | chr6_2:4755081-4755100 | Msa0906190:CDS | 45.0% |
| TCAGCGTGGTATGCAAGAAT+TGG | + | chr6_2:4754412-4754431 | Msa0906190:CDS | 45.0% | |
| AAGGGAGTGGTAATTGGAAG+TGG | - | chr6_2:4754569-4754588 | None:intergenic | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAG+TGG | - | chr6_2:4754582-4754601 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | + | chr6_2:4754597-4754616 | Msa0906190:CDS | 45.0% |
| TTTGTGGTTCAAGTCATGGC+TGG | + | chr6_2:4754601-4754620 | Msa0906190:CDS | 45.0% | |
| TTGTGGTTCAAGTCATGGCT+GGG | + | chr6_2:4754602-4754621 | Msa0906190:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | - | chr6_2:4754708-4754727 | None:intergenic | 45.0% | |
| !! | AAAGGGTTAGTCTATGCTGC+GGG | + | chr6_2:4754924-4754943 | Msa0906190:CDS | 45.0% |
| CCCCATGGTGAAACAACATT+AGG | - | chr6_2:4755020-4755039 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | + | chr6_2:4755072-4755091 | Msa0906190:CDS | 45.0% | |
| ! | AGGGAGACTTGTGGATTGTA+AGG | + | chr6_2:4755081-4755100 | Msa0906190:CDS | 45.0% |
| AAGTCATGGCTGGGTAGCAA+AGG | + | chr6_2:4754611-4754630 | Msa0906190:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | - | chr6_2:4754701-4754720 | None:intergenic | 50.0% | |
| TGAGCAAAATCATCCCCCCA+TGG | - | chr6_2:4755035-4755054 | None:intergenic | 50.0% | |
| GGTCCATTAGGGTAAGGATC+CGG | - | chr6_2:4755368-4755387 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | + | chr6_2:4755481-4755500 | Msa0906190:CDS | 50.0% | |
| AAGTCATGGCTGGGTAGCAA+AGG | + | chr6_2:4754611-4754630 | Msa0906190:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | - | chr6_2:4754701-4754720 | None:intergenic | 50.0% | |
| TGAGCAAAATCATCCCCCCA+TGG | - | chr6_2:4755035-4755054 | None:intergenic | 50.0% | |
| GGTCCATTAGGGTAAGGATC+CGG | - | chr6_2:4755368-4755387 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | + | chr6_2:4755481-4755500 | Msa0906190:CDS | 50.0% | |
| TCATGGCTGGGTAGCAAAGG+TGG | + | chr6_2:4754614-4754633 | Msa0906190:CDS | 55.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | - | chr6_2:4754697-4754716 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | - | chr6_2:4754702-4754721 | None:intergenic | 55.0% | |
| TAGTCTATGCTGCGGGACGA+TGG | + | chr6_2:4754931-4754950 | Msa0906190:CDS | 55.0% | |
| GCACCGGATCCTTACCCTAA+TGG | + | chr6_2:4755362-4755381 | Msa0906190:CDS | 55.0% | |
| GTTCACACGGATGCCACCTT+CGG | + | chr6_2:4755454-4755473 | Msa0906190:CDS | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | + | chr6_2:4755480-4755499 | Msa0906190:CDS | 55.0% | |
| TCATGGCTGGGTAGCAAAGG+TGG | + | chr6_2:4754614-4754633 | Msa0906190:CDS | 55.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | - | chr6_2:4754697-4754716 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | - | chr6_2:4754702-4754721 | None:intergenic | 55.0% | |
| TAGTCTATGCTGCGGGACGA+TGG | + | chr6_2:4754931-4754950 | Msa0906190:CDS | 55.0% | |
| GCACCGGATCCTTACCCTAA+TGG | + | chr6_2:4755362-4755381 | Msa0906190:CDS | 55.0% | |
| GTTCACACGGATGCCACCTT+CGG | + | chr6_2:4755454-4755473 | Msa0906190:CDS | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | + | chr6_2:4755480-4755499 | Msa0906190:CDS | 55.0% | |
| ! | ACGGATGCCACCTTCGGTGT+GGG | + | chr6_2:4755460-4755479 | Msa0906190:CDS | 60.0% |
| GGAAGAACCCACACCGAAGG+TGG | - | chr6_2:4755470-4755489 | None:intergenic | 60.0% | |
| ! | ACGGATGCCACCTTCGGTGT+GGG | + | chr6_2:4755460-4755479 | Msa0906190:CDS | 60.0% |
| GGAAGAACCCACACCGAAGG+TGG | - | chr6_2:4755470-4755489 | None:intergenic | 60.0% | |
| CACGGATGCCACCTTCGGTG+TGG | + | chr6_2:4755459-4755478 | Msa0906190:CDS | 65.0% | |
| GGCGGAAGAACCCACACCGA+AGG | - | chr6_2:4755473-4755492 | None:intergenic | 65.0% | |
| CACGGATGCCACCTTCGGTG+TGG | + | chr6_2:4755459-4755478 | Msa0906190:CDS | 65.0% | |
| GGCGGAAGAACCCACACCGA+AGG | - | chr6_2:4755473-4755492 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 4754324 | 4755508 | 4754324 | ID=Msa0906190;Name=Msa0906190 |
| chr6_2 | mRNA | 4754324 | 4755508 | 4754324 | ID=Msa0906190-mRNA-1;Parent=Msa0906190;Name=Msa0906190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|394 |
| chr6_2 | exon | 4754324 | 4755508 | 4754324 | ID=Msa0906190-mRNA-1:exon:1355;Parent=Msa0906190-mRNA-1 |
| chr6_2 | CDS | 4754324 | 4755508 | 4754324 | ID=Msa0906190-mRNA-1:cds;Parent=Msa0906190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
