AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907440 MtrunA17_Chr6g0455941 97.408 463 12 0 1 463 1 463 0.0 900
Msa0907440 MtrunA17_Chr6g0455981 86.534 453 61 0 9 461 4 456 0.0 774
Msa0907440 MtrunA17_Chr6g0455911 85.235 447 66 0 16 462 9 455 0.0 755
Msa0907440 MtrunA17_Chr6g0455951 81.385 462 83 2 1 462 1 459 0.0 737
Msa0907440 MtrunA17_Chr7g0220531 73.118 465 122 2 1 463 1 464 0.0 692
Msa0907440 MtrunA17_Chr8g0366021 56.798 456 186 2 18 463 8 462 0.0 526
Msa0907440 MtrunA17_Chr6g0459871 82.918 281 44 1 182 462 39 315 6.08e-154 439
Msa0907440 MtrunA17_Chr5g0437951 44.651 430 232 3 29 453 11 439 2.05e-127 377
Msa0907440 MtrunA17_Chr5g0437961 43.692 428 232 3 27 453 5 424 4.65e-122 362
Msa0907440 MtrunA17_Chr3g0114351 43.269 416 233 2 48 462 25 438 3.93e-119 355
Msa0907440 MtrunA17_Chr8g0366001 61.423 267 102 1 197 463 4 269 2.53e-117 345
Msa0907440 MtrunA17_Chr2g0333321 43.095 420 231 4 45 461 73 487 2.02e-113 342
Msa0907440 MtrunA17_Chr8g0365971 50.265 189 89 1 14 202 23 206 2.17e-54 181
Msa0907440 MtrunA17_Chr8g0365991 46.259 147 69 1 18 154 8 154 4.63e-34 126
Msa0907440 MtrunA17_Chr3g0114341 42.529 87 50 0 48 134 23 109 1.78e-18 81.3
Msa0907440 MtrunA17_Chr7g0256281 23.404 423 275 13 46 460 141 522 6.55e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907440 AT5G38820.1 62.838 444 162 2 20 461 8 450 0.0 580
Msa0907440 AT5G38820.3 62.838 444 162 2 20 461 8 450 0.0 580
Msa0907440 AT5G38820.2 62.838 444 162 2 20 461 13 455 0.0 580
Msa0907440 AT3G30390.1 63.387 437 159 1 25 461 21 456 0.0 572
Msa0907440 AT3G30390.3 63.387 437 159 1 25 461 21 456 0.0 572
Msa0907440 AT3G30390.2 63.387 437 159 1 25 461 21 456 0.0 572
Msa0907440 AT3G56200.1 42.657 429 240 3 30 457 9 432 3.10e-114 343
Msa0907440 AT2G40420.1 44.064 438 241 4 27 463 6 440 1.05e-111 337
Msa0907440 AT1G80510.1 39.627 482 244 7 14 462 22 489 3.80e-102 314
Msa0907440 AT2G41190.1 23.326 463 299 12 24 462 106 536 3.32e-14 75.1

Find 126 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAAGAAATATGATATTT+TGG 0.143049 6_2:-6044380 None:intergenic
TTCTTTGGGTTCCTTCTATT+TGG 0.167128 6_2:+6042540 Msa0907440:CDS
ATTGTAGGTGATGTGATTTC+TGG 0.204897 6_2:+6040407 Msa0907440:intron
TTCTTCCTATGGAAGTCTTA+TGG 0.207163 6_2:+6040146 Msa0907440:CDS
AATTTGTCCACCACAGTTAT+TGG 0.221850 6_2:+6039988 Msa0907440:CDS
TCCAAAATCAGTATCAAAAT+TGG 0.255928 6_2:-6042589 None:intergenic
TGGTCAAGTTCAAGCAGTTT+TGG 0.268106 6_2:+6044532 Msa0907440:three_prime_UTR
CAATAATGCTGTTAGGATTA+TGG 0.274763 6_2:-6040073 None:intergenic
ACTTGCTGTGTTTGGACCTT+TGG 0.275914 6_2:+6040526 Msa0907440:CDS
ACGACAAATAAATTGAATTA+TGG 0.276350 6_2:+6044557 Msa0907440:three_prime_UTR
CAAATTTCATACCTAGCATT+TGG 0.277042 6_2:+6042814 Msa0907440:CDS
TCTTCCTATGGAAGTCTTAT+GGG 0.289755 6_2:+6040147 Msa0907440:CDS
TGCAAAAGCATCCTATATTC+TGG 0.291692 6_2:+6044407 Msa0907440:three_prime_UTR
ATTGTTTACATGATCATTAT+TGG 0.304311 6_2:+6040240 Msa0907440:CDS
TACGTACTGACAAGCTTCTT+TGG 0.306305 6_2:+6042525 Msa0907440:CDS
TCCACCACAGTTATTGGTGC+TGG 0.320758 6_2:+6039994 Msa0907440:CDS
TTTACAACACTTGCTGTGTT+TGG 0.329895 6_2:+6040518 Msa0907440:CDS
AATGTAAGAGGGACATTTGT+TGG 0.335287 6_2:+6044447 Msa0907440:three_prime_UTR
TTTAATGGAGCTTCATTTCC+TGG 0.343179 6_2:+6039955 Msa0907440:CDS
TTTGGTGTCCATTGGTGGAC+TGG 0.358328 6_2:+6040476 Msa0907440:CDS
TTCCAGTTCTCTGGAGCAAC+AGG 0.363246 6_2:+6042843 Msa0907440:CDS
GTGATTTCTGGAACGACTTC+AGG 0.369597 6_2:+6040419 Msa0907440:CDS
GAATCTACATCAGTAATGAT+AGG 0.372014 6_2:-6041948 None:intergenic
TTCACATCTGCATTATCAAT+TGG 0.372056 6_2:+6041840 Msa0907440:CDS
TCAATTATCAAGATTATTAG+TGG 0.372252 6_2:+6041900 Msa0907440:CDS
AGTTATTGGTGCTGGGATCA+TGG 0.376122 6_2:+6040002 Msa0907440:CDS
AGTCTTATGGGAGATACCTT+TGG 0.377085 6_2:+6040159 Msa0907440:CDS
TTCCTCATCGAGAAGGCCTT+TGG 0.388580 6_2:+6042728 Msa0907440:CDS
TCTCTGTCAATAATGCTGTT+AGG 0.389276 6_2:-6040080 None:intergenic
CACCTGTTGCTCCAGAGAAC+TGG 0.391056 6_2:-6042845 None:intergenic
ATGTCCCTCTTACATTTAAG+AGG 0.392425 6_2:-6044440 None:intergenic
GTCTTATGGGAGATACCTTT+GGG 0.394756 6_2:+6040160 Msa0907440:CDS
ACGTACTGACAAGCTTCTTT+GGG 0.398754 6_2:+6042526 Msa0907440:CDS
AAATTTCATACCTAGCATTT+GGG 0.399236 6_2:+6042815 Msa0907440:CDS
ATCTCCCTCTTAAATGTAAG+AGG 0.399655 6_2:+6044435 Msa0907440:three_prime_UTR
TCAATTACTATTGCCCTTGT+TGG 0.399975 6_2:+6042774 Msa0907440:CDS
TTGGTCAGCTTAAAGCGAAT+TGG 0.402046 6_2:+6040545 Msa0907440:CDS
TTGGTGTCCATTGGTGGACT+GGG 0.404638 6_2:+6040477 Msa0907440:CDS
TTCCAGCTGCAATCACTTTG+AGG 0.404901 6_2:+6042889 Msa0907440:CDS
GCATTAGCTACAAGAGCATC+AGG 0.419568 6_2:-6039847 None:intergenic
TGAAAGCTGATAATGACAAT+TGG 0.425002 6_2:+6039814 Msa0907440:exon
GGAGATGAGACCCAGAATAT+AGG 0.425491 6_2:-6044418 None:intergenic
CACCATCCTGGTATCCTTGA+AGG 0.427798 6_2:+6040449 Msa0907440:CDS
ATTGAAAGTGTACCGGCTAA+AGG 0.431768 6_2:+6044477 Msa0907440:three_prime_UTR
GCAGGGAATCTTTCTTCCTA+TGG 0.437556 6_2:+6040135 Msa0907440:CDS
GGAGATACCTTTGGGAAATA+CGG 0.437934 6_2:+6040168 Msa0907440:CDS
AGTAATGATAGGGAAGAGTC+TGG 0.449295 6_2:-6041937 None:intergenic
GAGTTCCTTCACCAAATAGA+AGG 0.452164 6_2:-6042551 None:intergenic
GTTATTGGTGCTGGGATCAT+GGG 0.455926 6_2:+6040003 Msa0907440:CDS
CCATCTGTTTCTTGACACTT+AGG 0.461672 6_2:-6039919 None:intergenic
GCAAAAGCATCCTATATTCT+GGG 0.465863 6_2:+6044408 Msa0907440:three_prime_UTR
GGTATCCTTGAAGGATGGTT+TGG 0.466861 6_2:+6040458 Msa0907440:CDS
GACCATTCTTTCACAACCAC+CGG 0.469945 6_2:-6044514 None:intergenic
GGGTTCCTTCTATTTGGTGA+AGG 0.475952 6_2:+6042546 Msa0907440:CDS
CTTGTTGGCACTATCTTCCT+CGG 0.475953 6_2:+6042789 Msa0907440:CDS
AAGGATGGTTTGGTGTCCAT+TGG 0.478302 6_2:+6040468 Msa0907440:CDS
AAGATTATTAGTGGAAGCAT+TGG 0.480946 6_2:+6041909 Msa0907440:CDS
GCTACAAGAGCATCAGGTGC+AGG 0.481251 6_2:-6039841 None:intergenic
CACCTCAAAGTGATTGCAGC+TGG 0.481278 6_2:-6042891 None:intergenic
CCACCACAGTTATTGGTGCT+GGG 0.481742 6_2:+6039995 Msa0907440:CDS
AGGCAATTGAGTTCATGATC+AGG 0.483659 6_2:+6040103 Msa0907440:CDS
GATGGTTTGGTGTCCATTGG+TGG 0.485337 6_2:+6040471 Msa0907440:CDS
TTAATGGAGCTTCATTTCCT+GGG 0.487705 6_2:+6039956 Msa0907440:CDS
AGATTATTAGTGGAAGCATT+GGG 0.491513 6_2:+6041910 Msa0907440:CDS
TCATAACATTGATAATGAAC+TGG 0.495103 6_2:+6042443 Msa0907440:CDS
TTCTGCTTTGATCAACAAGA+AGG 0.498521 6_2:+6044005 Msa0907440:CDS
CTCAATGCATAGAAAACTAC+AGG 0.499017 6_2:-6042681 None:intergenic
GAGGATTCCTCACGGATGCG+TGG 0.508056 6_2:+6042465 Msa0907440:CDS
GCATTGAGGGTCAACATAGA+TGG 0.513114 6_2:+6042696 Msa0907440:CDS
AGGATTCCTCACGGATGCGT+GGG 0.514657 6_2:+6042466 Msa0907440:CDS
GGACACCAAACCATCCTTCA+AGG 0.515087 6_2:-6040463 None:intergenic
ACCATGTCCATATACAGCTT+CGG 0.515889 6_2:-6044267 None:intergenic
GCAACAAATATGTAGTCGGC+TGG 0.519004 6_2:-6044358 None:intergenic
AAACTGCCATCACTATCATA+AGG 0.525276 6_2:-6043951 None:intergenic
ACACTGAAGAGCATAGAGTA+AGG 0.526789 6_2:-6042503 None:intergenic
TATAATTGTGCAATACTATG+AGG 0.526825 6_2:-6044649 None:intergenic
AACAAGGTTGAACATGTTGT+AGG 0.530772 6_2:-6044210 None:intergenic
CATTGATTGGTTGTAAGAAG+AGG 0.534679 6_2:+6044680 Msa0907440:three_prime_UTR
CGTTCCTTTAGTCCTTTAGC+CGG 0.542592 6_2:-6044489 None:intergenic
CGAGGAAGATAGTGCCAACA+AGG 0.546384 6_2:-6042788 None:intergenic
AGGATTATGGCAAGAAGACC+AGG 0.549978 6_2:-6040060 None:intergenic
AATCTACATCAGTAATGATA+GGG 0.551706 6_2:-6041947 None:intergenic
GACAAATTGAAAACAGCCCC+AGG 0.556593 6_2:-6039973 None:intergenic
GCATCAAAAGTTCAATTACA+AGG 0.566341 6_2:-6044625 None:intergenic
TCAGGTGGAATTCACCATCC+TGG 0.566685 6_2:+6040437 Msa0907440:CDS
GTCTGTCCTTATGATAGTGA+TGG 0.567619 6_2:+6043945 Msa0907440:CDS
TTTGGCAACAAATATGTAGT+CGG 0.570243 6_2:-6044362 None:intergenic
TCATTAAGAGCAGAACCAAA+AGG 0.570302 6_2:-6042615 None:intergenic
ATGTGCGCCCAGTCCACCAA+TGG 0.574258 6_2:-6040484 None:intergenic
TGGAAAATAACCCAAATGCT+AGG 0.576363 6_2:-6042825 None:intergenic
ATCTCCCATAAGACTTCCAT+AGG 0.579026 6_2:-6040151 None:intergenic
ATTTCTGGAACGACTTCAGG+TGG 0.580424 6_2:+6040422 Msa0907440:CDS
AACCATCCTTCAAGGATACC+AGG 0.580545 6_2:-6040455 None:intergenic
TGTCCCTCTTACATTTAAGA+GGG 0.587491 6_2:-6044439 None:intergenic
TGCCGGTGGTTGTGAAAGAA+TGG 0.589513 6_2:+6044512 Msa0907440:three_prime_UTR
ATCCTGGTATCCTTGAAGGA+TGG 0.589559 6_2:+6040453 Msa0907440:CDS
CACTGAAGAGCATAGAGTAA+GGG 0.591533 6_2:-6042502 None:intergenic
TCTTGACACTTAGGTAACAA+AGG 0.596273 6_2:-6039910 None:intergenic
TAATGGAGCTTCATTTCCTG+GGG 0.598538 6_2:+6039957 Msa0907440:CDS
TGGGAAATACGGAAAAGCAC+TGG 0.598996 6_2:+6040179 Msa0907440:CDS
TGTACCGGCTAAAGGACTAA+AGG 0.599941 6_2:+6044485 Msa0907440:three_prime_UTR
AACAGCATTATTGACAGAGA+AGG 0.601333 6_2:+6040083 Msa0907440:CDS
TATTCTTCATAACTGTGTGA+AGG 0.602596 6_2:+6044187 Msa0907440:three_prime_UTR
TAACATTGATAATGAACTGG+AGG 0.604897 6_2:+6042446 Msa0907440:CDS
ATATAAGCTGTCATCAGCAC+AGG 0.613100 6_2:-6041996 None:intergenic
CTGAAGTTATCAACAACCAA+AGG 0.615882 6_2:-6042744 None:intergenic
TCTCCCTCTTAAATGTAAGA+GGG 0.615882 6_2:+6044436 Msa0907440:three_prime_UTR
CCCAGCACCAATAACTGTGG+TGG 0.618929 6_2:-6039995 None:intergenic
AACCAAAGGCCTTCTCGATG+AGG 0.619593 6_2:-6042730 None:intergenic
GCTTATATCTGTCACTACAA+TGG 0.622057 6_2:+6042011 Msa0907440:CDS
ATTCGCTTTAAGCTGACCAA+AGG 0.630059 6_2:-6040542 None:intergenic
CCTAAGTGTCAAGAAACAGA+TGG 0.641175 6_2:+6039919 Msa0907440:CDS
ATCCTTCAAGGATACCAGGA+TGG 0.644563 6_2:-6040451 None:intergenic
TCCGAAGCTGTATATGGACA+TGG 0.645244 6_2:+6044266 Msa0907440:three_prime_UTR
GTAATGATAGGGAAGAGTCT+GGG 0.650937 6_2:-6041936 None:intergenic
AAAGGACTAAAGGAACGTGC+CGG 0.652198 6_2:+6044495 Msa0907440:three_prime_UTR
GGATTCCTCACGGATGCGTG+GGG 0.652593 6_2:+6042467 Msa0907440:CDS
ACTCTACTCTGTTATAAACA+AGG 0.655190 6_2:-6044226 None:intergenic
ATGAAGAATATATGCACACA+TGG 0.667279 6_2:-6044174 None:intergenic
TGTGTTATAATCACTAACGT+TGG 0.671440 6_2:+6040210 Msa0907440:CDS
ATGAACTGGAGGATTCCTCA+CGG 0.679968 6_2:+6042457 Msa0907440:CDS
GGACTAAAGGAACGTGCCGG+TGG 0.686749 6_2:+6044498 Msa0907440:three_prime_UTR
CACAACCCCACGCATCCGTG+AGG 0.689700 6_2:-6042472 None:intergenic
GAGGAAGATAGTGCCAACAA+GGG 0.710864 6_2:-6042787 None:intergenic
GATCCCAGCACCAATAACTG+TGG 0.717106 6_2:-6039998 None:intergenic
TAGGTATGAAATTTGCTCCG+AGG 0.720719 6_2:-6042806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATCGAATTTTAATTAA+GGG - chr6_2:6040982-6041001 None:intergenic 10.0%
!!! AATAAATCGAATTTTAATTA+AGG - chr6_2:6040981-6041000 None:intergenic 10.0%
!!! AATTAAAATTCGATTTATTT+TGG - chr6_2:6040725-6040744 None:intergenic 10.0%
!!! AATAAATCGAATTTTAATTA+AGG + chr6_2:6040981-6041000 Msa0907440:intron 10.0%
!!! ATAAATCGAATTTTAATTAA+GGG + chr6_2:6040982-6041001 Msa0907440:intron 10.0%
!! TATTTGTAAATTGAAAAAAA+TGG + chr6_2:6041129-6041148 Msa0907440:intron 10.0%
!!! TTAAAAAGTCATATTTTTAT+CGG - chr6_2:6043102-6043121 None:intergenic 10.0%
!! AATTCATGAAATAAAATATT+GGG - chr6_2:6043775-6043794 None:intergenic 10.0%
!! TCAATTTACAAATAATGAAA+TGG - chr6_2:6041123-6041142 None:intergenic 15.0%
!! ACCAACAAATTAAAAAAAAA+TGG + chr6_2:6041323-6041342 Msa0907440:intron 15.0%
!!! TCCATTTTTTTTTAATTTGT+TGG - chr6_2:6041327-6041346 None:intergenic 15.0%
!!! AGATTATTTTAGTTAATTTC+TGG + chr6_2:6042319-6042338 Msa0907440:intron 15.0%
!! ATTCATGAAATAAAATATTG+GGG - chr6_2:6043774-6043793 None:intergenic 15.0%
!! GAATTCATGAAATAAAATAT+TGG - chr6_2:6043776-6043795 None:intergenic 15.0%
!!! ACAAAAGAAATATGATATTT+TGG - chr6_2:6044383-6044402 None:intergenic 15.0%
!!! TTATATATGTTTTCATTGAT+TGG + chr6_2:6044667-6044686 Msa0907440:three_prime_UTR 15.0%
!! ATTGTTTACATGATCATTAT+TGG + chr6_2:6040240-6040259 Msa0907440:CDS 20.0%
!! TAATCAACTAAAACAAAAAC+TGG - chr6_2:6040327-6040346 None:intergenic 20.0%
!!! AGTTTTAATTCAAAAACGTT+AGG + chr6_2:6040790-6040809 Msa0907440:intron 20.0%
!!! AGTTTTAATTCAAAAACGTT+AGG - chr6_2:6040790-6040809 None:intergenic 20.0%
!!! CGTTTTTGAATTAAAACTAA+CGG + chr6_2:6040917-6040936 Msa0907440:intron 20.0%
!! ATTGTTTGGTCATAAAAAAT+AGG - chr6_2:6041251-6041270 None:intergenic 20.0%
!! TTGTCAAACTTATAATTGTT+TGG - chr6_2:6041265-6041284 None:intergenic 20.0%
!! TCAATTATCAAGATTATTAG+TGG + chr6_2:6041900-6041919 Msa0907440:CDS 20.0%
!! GTGTAAAAACATTAAAACAA+GGG - chr6_2:6042074-6042093 None:intergenic 20.0%
!! TGTGTAAAAACATTAAAACA+AGG - chr6_2:6042075-6042094 None:intergenic 20.0%
!!! ATCTGAATTTCTATTGTTTT+AGG - chr6_2:6042303-6042322 None:intergenic 20.0%
!!! ACTAAAATTTGTTTACTTCA+TGG + chr6_2:6042370-6042389 Msa0907440:intron 20.0%
!! GTAACAAATAAATTGAAACA+TGG + chr6_2:6042997-6043016 Msa0907440:intron 20.0%
!!! TGGATGAAATATTAGTTTAT+AGG - chr6_2:6043148-6043167 None:intergenic 20.0%
!!! GAATATTATTTTGAGATTAG+TGG - chr6_2:6043168-6043187 None:intergenic 20.0%
!! TAAATCCAATGATAAAAAAG+TGG + chr6_2:6043194-6043213 Msa0907440:intron 20.0%
!! TTGTATATTTATATCGATGT+TGG - chr6_2:6043336-6043355 None:intergenic 20.0%
!!! ATTTTCTTCTTTAACTTGAA+TGG + chr6_2:6043449-6043468 Msa0907440:intron 20.0%
!! TAGGATTTACTAAATAAAGT+AGG - chr6_2:6043517-6043536 None:intergenic 20.0%
!! TTTATTTAGTAAATCCTAAC+TGG + chr6_2:6043519-6043538 Msa0907440:intron 20.0%
!! TTCATGAAATAAAATATTGG+GGG - chr6_2:6043773-6043792 None:intergenic 20.0%
!! AAAATAAATGAAAAACGCAA+TGG + chr6_2:6044326-6044345 Msa0907440:three_prime_UTR 20.0%
!! ACGACAAATAAATTGAATTA+TGG + chr6_2:6044557-6044576 Msa0907440:three_prime_UTR 20.0%
!! GGTGATTTTCATGAATTTAA+TGG + chr6_2:6039940-6039959 Msa0907440:CDS 25.0%
!!! TTTGGTTTTGTTTGTATTGT+AGG + chr6_2:6040392-6040411 Msa0907440:intron 25.0%
!! TTCTTGCATTACAACAATTT+TGG + chr6_2:6040579-6040598 Msa0907440:intron 25.0%
! GATACTACCTAAATAGTTAA+GGG - chr6_2:6041013-6041032 None:intergenic 25.0%
!!! TTTTCTTCTGGAATTTTTCT+AGG + chr6_2:6040822-6040841 Msa0907440:intron 25.0%
! ATGATATGAAGATGAAAAAG+AGG + chr6_2:6040871-6040890 Msa0907440:intron 25.0%
! GATACTACCTAAATAGTTAA+GGG + chr6_2:6041013-6041032 Msa0907440:intron 25.0%
!! TCATGACTAAATTGCATTTT+TGG - chr6_2:6041040-6041059 None:intergenic 25.0%
! AGAAAAATAGAGAAGTCATA+TGG + chr6_2:6041203-6041222 Msa0907440:intron 25.0%
! TTTGGTCATAAAAAATAGGA+TGG - chr6_2:6041247-6041266 None:intergenic 25.0%
! TTCTAACAACTGATATAGTT+AGG + chr6_2:6041479-6041498 Msa0907440:intron 25.0%
!!! AGTTTTGTTGCTAAATTGTT+TGG + chr6_2:6041573-6041592 Msa0907440:intron 25.0%
!! AAGTAGCAATTTGTTTCATT+TGG - chr6_2:6041606-6041625 None:intergenic 25.0%
! TCTAATGTTCTAATTCACTT+GGG - chr6_2:6041649-6041668 None:intergenic 25.0%
! ATCTAATGTTCTAATTCACT+TGG - chr6_2:6041650-6041669 None:intergenic 25.0%
!!! CTTTTTATGTTTTTGTACCT+TGG + chr6_2:6041693-6041712 Msa0907440:intron 25.0%
! AATCTACATCAGTAATGATA+GGG - chr6_2:6041950-6041969 None:intergenic 25.0%
!!! GTGAAATTCTAAGTTTGTTA+TGG + chr6_2:6042105-6042124 Msa0907440:intron 25.0%
!! CTTTTCAAATTAGTTGGAAA+TGG - chr6_2:6042189-6042208 None:intergenic 25.0%
!! TGGTTTCTTTTCAAATTAGT+TGG - chr6_2:6042195-6042214 None:intergenic 25.0%
! TTATAAAAAGTTGACATGCA+TGG - chr6_2:6042215-6042234 None:intergenic 25.0%
!!! TCATAACATTGATAATGAAC+TGG + chr6_2:6042443-6042462 Msa0907440:CDS 25.0%
! TCCAAAATCAGTATCAAAAT+TGG - chr6_2:6042592-6042611 None:intergenic 25.0%
! AAATTTCATACCTAGCATTT+GGG + chr6_2:6042815-6042834 Msa0907440:CDS 25.0%
!!! GAATTCATTTAGTTCTGTAA+TGG + chr6_2:6042926-6042945 Msa0907440:intron 25.0%
!!! TAGTTCTGTAATGGATTTTT+TGG + chr6_2:6042935-6042954 Msa0907440:intron 25.0%
!!! TGTTTGCTTTTGATATTTAG+TGG + chr6_2:6042967-6042986 Msa0907440:intron 25.0%
! TTATATAATCGAGATTCACA+CGG + chr6_2:6043020-6043039 Msa0907440:intron 25.0%
!! CGATTGATTTACTTCATTAT+AGG + chr6_2:6043426-6043445 Msa0907440:intron 25.0%
! TGATAATTAGAAATCCAGTT+AGG - chr6_2:6043536-6043555 None:intergenic 25.0%
!!! CTGCAGTTTTTTCTATATAA+TGG - chr6_2:6043563-6043582 None:intergenic 25.0%
! ATAGAAAAAACTGCAGAAAA+TGG + chr6_2:6043567-6043586 Msa0907440:intron 25.0%
! TCATGAAATAAAATATTGGG+GGG - chr6_2:6043772-6043791 None:intergenic 25.0%
!!! CAATTTTATTGAAAGTGTAC+CGG + chr6_2:6044470-6044489 Msa0907440:three_prime_UTR 25.0%
! TATAATTGTGCAATACTATG+AGG - chr6_2:6044652-6044671 None:intergenic 25.0%
! TGAAAGCTGATAATGACAAT+TGG + chr6_2:6039814-6039833 Msa0907440:exon 30.0%
TTGTAGCTAATGCAAAAACA+AGG + chr6_2:6039857-6039876 Msa0907440:CDS 30.0%
TGCAAAAACAAGGAAGAAAA+AGG + chr6_2:6039867-6039886 Msa0907440:CDS 30.0%
CAATAATGCTGTTAGGATTA+TGG - chr6_2:6040076-6040095 None:intergenic 30.0%
TGTGTTATAATCACTAACGT+TGG + chr6_2:6040210-6040229 Msa0907440:CDS 30.0%
ATTCACTTTAAGCTGATCAA+GGG - chr6_2:6040606-6040625 None:intergenic 30.0%
AATTCACTTTAAGCTGATCA+AGG - chr6_2:6040607-6040626 None:intergenic 30.0%
TTGATCAGCTTAAAGTGAAT+TGG + chr6_2:6040606-6040625 Msa0907440:intron 30.0%
CGATACTACCTAAATAGTTA+AGG - chr6_2:6041012-6041031 None:intergenic 30.0%
! AGGTTTTCTTCATTTTCTTC+TGG + chr6_2:6040810-6040829 Msa0907440:intron 30.0%
!!! TCTAGGATTTTTGTTGTTGA+AGG + chr6_2:6040839-6040858 Msa0907440:intron 30.0%
!!! TTTTTGTTGTTGAAGGTTGA+TGG + chr6_2:6040846-6040865 Msa0907440:intron 30.0%
CGATACTACCTAAATAGTTA+AGG + chr6_2:6041012-6041031 Msa0907440:intron 30.0%
! TTTTGGTCCCTTAACTATTT+AGG - chr6_2:6041023-6041042 None:intergenic 30.0%
CATGATAGATTAGATGACAA+TGG + chr6_2:6041055-6041074 Msa0907440:intron 30.0%
ATAGATTAGATGACAATGGT+AGG + chr6_2:6041059-6041078 Msa0907440:intron 30.0%
! TATTTTTCTTCACCCAGTTT+GGG - chr6_2:6041192-6041211 None:intergenic 30.0%
GCATAAAGGATTCAATTTGT+TGG - chr6_2:6041421-6041440 None:intergenic 30.0%
CTGAACATAACATTGCATAA+AGG - chr6_2:6041435-6041454 None:intergenic 30.0%
CTTTATGCAATGTTATGTTC+AGG + chr6_2:6041433-6041452 Msa0907440:intron 30.0%
! TTATGTTCAGGTTATGTGAT+AGG + chr6_2:6041445-6041464 Msa0907440:intron 30.0%
ACTTGGGCAAAAATATGAAA+GGG - chr6_2:6041633-6041652 None:intergenic 30.0%
CCATAAAACATGTAAAACCA+AGG - chr6_2:6041713-6041732 None:intergenic 30.0%
!!! CCTTGGTTTTACATGTTTTA+TGG + chr6_2:6041710-6041729 Msa0907440:intron 30.0%
! TTACATGTTTTATGGTACAC+CGG + chr6_2:6041718-6041737 Msa0907440:intron 30.0%
TTCACATCTGCATTATCAAT+TGG + chr6_2:6041840-6041859 Msa0907440:CDS 30.0%
! AAGATTATTAGTGGAAGCAT+TGG + chr6_2:6041909-6041928 Msa0907440:CDS 30.0%
!! AGATTATTAGTGGAAGCATT+GGG + chr6_2:6041910-6041929 Msa0907440:CDS 30.0%
GAATCTACATCAGTAATGAT+AGG - chr6_2:6041951-6041970 None:intergenic 30.0%
AAACATTAAAACAAGGGAAC+TGG - chr6_2:6042068-6042087 None:intergenic 30.0%
!! TAACATTGATAATGAACTGG+AGG + chr6_2:6042446-6042465 Msa0907440:CDS 30.0%
!!! GCCAATTTTGATACTGATTT+TGG + chr6_2:6042588-6042607 Msa0907440:CDS 30.0%
!!! ACTGATTTTGGAATTCCTTT+TGG + chr6_2:6042600-6042619 Msa0907440:CDS 30.0%
! TGTAGTTTTCTATGCATTGA+GGG + chr6_2:6042683-6042702 Msa0907440:CDS 30.0%
CAAATTTCATACCTAGCATT+TGG + chr6_2:6042814-6042833 Msa0907440:CDS 30.0%
!!! TTCTGTAATGGATTTTTTGG+TGG + chr6_2:6042938-6042957 Msa0907440:intron 30.0%
CCATACATGATTCAGAAAAT+AGG - chr6_2:6043050-6043069 None:intergenic 30.0%
! CCTATTTTCTGAATCATGTA+TGG + chr6_2:6043047-6043066 Msa0907440:intron 30.0%
!!! AACAGCCACTTTTTTATCAT+TGG - chr6_2:6043202-6043221 None:intergenic 30.0%
GTGATTCATTCTAATGAATC+TGG + chr6_2:6043271-6043290 Msa0907440:intron 30.0%
CAATAAAGATTCGTGTTGAA+TGG + chr6_2:6043353-6043372 Msa0907440:intron 30.0%
! TTTTTCATGGGTGCTTATTT+AGG - chr6_2:6043485-6043504 None:intergenic 30.0%
AAATAAGCACCCATGAAAAA+CGG + chr6_2:6043485-6043504 Msa0907440:intron 30.0%
! TAAGCATTTTCTTTTCCTAC+AGG + chr6_2:6043884-6043903 Msa0907440:intron 30.0%
! AAGCATTTTCTTTTCCTACA+GGG + chr6_2:6043885-6043904 Msa0907440:intron 30.0%
TATGGAAATACTTGTACTGT+GGG - chr6_2:6044064-6044083 None:intergenic 30.0%
TTTCCATACTTTCAGATGAA+AGG + chr6_2:6044076-6044095 Msa0907440:intron 30.0%
GAAAGGAACATAATTTCTGA+TGG + chr6_2:6044093-6044112 Msa0907440:intron 30.0%
!!! TTTTTTTTAGAGGGTCTGAT+AGG + chr6_2:6044129-6044148 Msa0907440:intron 30.0%
ATGAAGAATATATGCACACA+TGG - chr6_2:6044177-6044196 None:intergenic 30.0%
TATTCTTCATAACTGTGTGA+AGG + chr6_2:6044187-6044206 Msa0907440:three_prime_UTR 30.0%
ACTCTACTCTGTTATAAACA+AGG - chr6_2:6044229-6044248 None:intergenic 30.0%
TTTGGCAACAAATATGTAGT+CGG - chr6_2:6044365-6044384 None:intergenic 30.0%
GCATCAAAAGTTCAATTACA+AGG - chr6_2:6044628-6044647 None:intergenic 30.0%
TCTTGACACTTAGGTAACAA+AGG - chr6_2:6039913-6039932 None:intergenic 35.0%
TTTAATGGAGCTTCATTTCC+TGG + chr6_2:6039955-6039974 Msa0907440:CDS 35.0%
TTAATGGAGCTTCATTTCCT+GGG + chr6_2:6039956-6039975 Msa0907440:CDS 35.0%
AATTTGTCCACCACAGTTAT+TGG + chr6_2:6039988-6040007 Msa0907440:CDS 35.0%
TCTCTGTCAATAATGCTGTT+AGG - chr6_2:6040083-6040102 None:intergenic 35.0%
AACAGCATTATTGACAGAGA+AGG + chr6_2:6040083-6040102 Msa0907440:CDS 35.0%
TTCTTCCTATGGAAGTCTTA+TGG + chr6_2:6040146-6040165 Msa0907440:CDS 35.0%
! TCTTCCTATGGAAGTCTTAT+GGG + chr6_2:6040147-6040166 Msa0907440:CDS 35.0%
CAGTGCTAGACTTAAGAATA+AGG - chr6_2:6040271-6040290 None:intergenic 35.0%
GCACTGAAAATTTGTATGTC+TGG + chr6_2:6040285-6040304 Msa0907440:intron 35.0%
TCACGTCTAAACAGATCAAT+GGG - chr6_2:6040354-6040373 None:intergenic 35.0%
ATTGTAGGTGATGTGATTTC+TGG + chr6_2:6040407-6040426 Msa0907440:intron 35.0%
!! TTTACAACACTTGCTGTGTT+TGG + chr6_2:6040518-6040537 Msa0907440:CDS 35.0%
TTACAGCAGTGATGATAGAT+TGG + chr6_2:6040648-6040667 Msa0907440:intron 35.0%
! GATTGGCTAAATTGCATTTC+TGG + chr6_2:6040665-6040684 Msa0907440:intron 35.0%
TTCTGGTCCCTTAACTATTT+AGG + chr6_2:6040682-6040701 Msa0907440:intron 35.0%
CTATTTAGGTAGTATCGCTT+TGG + chr6_2:6040696-6040715 Msa0907440:intron 35.0%
GTGTAACTGAGAGAAGTTAA+GGG - chr6_2:6040752-6040771 None:intergenic 35.0%
TGTGTAACTGAGAGAAGTTA+AGG - chr6_2:6040753-6040772 None:intergenic 35.0%
CTATTTAGGTAGTATCGCTT+TGG - chr6_2:6040696-6040715 None:intergenic 35.0%
!! CTATTTTTCTTCACCCAGTT+TGG - chr6_2:6041193-6041212 None:intergenic 35.0%
!! TCATCCTCTAAAACCTATGT+TGG + chr6_2:6041503-6041522 Msa0907440:intron 35.0%
!! TCATCCAACATAGGTTTTAG+AGG - chr6_2:6041510-6041529 None:intergenic 35.0%
! TTAGAGTACTCATCCAACAT+AGG - chr6_2:6041519-6041538 None:intergenic 35.0%
TTGGGCAAAAATATGAAAGG+GGG - chr6_2:6041631-6041650 None:intergenic 35.0%
CTTGGGCAAAAATATGAAAG+GGG - chr6_2:6041632-6041651 None:intergenic 35.0%
CACTTGGGCAAAAATATGAA+AGG - chr6_2:6041634-6041653 None:intergenic 35.0%
TAATGATACAGGCAATGTAC+CGG - chr6_2:6041740-6041759 None:intergenic 35.0%
! TTCTTTTCCTTGTCATTGCT+GGG + chr6_2:6041871-6041890 Msa0907440:CDS 35.0%
GCTTATATCTGTCACTACAA+TGG + chr6_2:6042011-6042030 Msa0907440:CDS 35.0%
GTTATGGATTTCCATGAAGA+AGG + chr6_2:6042121-6042140 Msa0907440:intron 35.0%
TTGGAAATGGAATGAAGTGA+TGG - chr6_2:6042176-6042195 None:intergenic 35.0%
TAAAGACTAATGCAGTGCAA+AGG - chr6_2:6042256-6042275 None:intergenic 35.0%
TACTTCATGGATGTATTGTC+TGG + chr6_2:6042383-6042402 Msa0907440:intron 35.0%
! TTCTTTGGGTTCCTTCTATT+TGG + chr6_2:6042540-6042559 Msa0907440:CDS 35.0%
TCATTAAGAGCAGAACCAAA+AGG - chr6_2:6042618-6042637 None:intergenic 35.0%
CTCAATGCATAGAAAACTAC+AGG - chr6_2:6042684-6042703 None:intergenic 35.0%
! CTGTAGTTTTCTATGCATTG+AGG + chr6_2:6042682-6042701 Msa0907440:CDS 35.0%
! TGATATTTTCCTCATCGAGA+AGG + chr6_2:6042721-6042740 Msa0907440:CDS 35.0%
CTGAAGTTATCAACAACCAA+AGG - chr6_2:6042747-6042766 None:intergenic 35.0%
TCAATTACTATTGCCCTTGT+TGG + chr6_2:6042774-6042793 Msa0907440:CDS 35.0%
TGGAAAATAACCCAAATGCT+AGG - chr6_2:6042828-6042847 None:intergenic 35.0%
CTGGATTCATCTTAGTGAAT+CGG + chr6_2:6043290-6043309 Msa0907440:intron 35.0%
! AGATTCGTGTTGAATGGATT+TGG + chr6_2:6043359-6043378 Msa0907440:intron 35.0%
!!! AGGTTAATGCCGTTTTTCAT+GGG - chr6_2:6043497-6043516 None:intergenic 35.0%
!!! TAGGTTAATGCCGTTTTTCA+TGG - chr6_2:6043498-6043517 None:intergenic 35.0%
ATCCTGCTATCATATGTCAA+TGG - chr6_2:6043687-6043706 None:intergenic 35.0%
ACATATGATAGCAGGATAGA+AGG + chr6_2:6043690-6043709 Msa0907440:intron 35.0%
AAACTGCCATCACTATCATA+AGG - chr6_2:6043954-6043973 None:intergenic 35.0%
TTCTGCTTTGATCAACAAGA+AGG + chr6_2:6044005-6044024 Msa0907440:CDS 35.0%
GTATGGAAATACTTGTACTG+TGG - chr6_2:6044065-6044084 None:intergenic 35.0%
GTTCCTTTCATCTGAAAGTA+TGG - chr6_2:6044082-6044101 None:intergenic 35.0%
AACAAGGTTGAACATGTTGT+AGG - chr6_2:6044213-6044232 None:intergenic 35.0%
CAAAAATCCGAAGCTGTATA+TGG + chr6_2:6044260-6044279 Msa0907440:three_prime_UTR 35.0%
!! TGCAAAAGCATCCTATATTC+TGG + chr6_2:6044407-6044426 Msa0907440:three_prime_UTR 35.0%
!! GCAAAAGCATCCTATATTCT+GGG + chr6_2:6044408-6044427 Msa0907440:three_prime_UTR 35.0%
ATCTCCCTCTTAAATGTAAG+AGG + chr6_2:6044435-6044454 Msa0907440:three_prime_UTR 35.0%
TCTCCCTCTTAAATGTAAGA+GGG + chr6_2:6044436-6044455 Msa0907440:three_prime_UTR 35.0%
TGTCCCTCTTACATTTAAGA+GGG - chr6_2:6044442-6044461 None:intergenic 35.0%
ATGTCCCTCTTACATTTAAG+AGG - chr6_2:6044443-6044462 None:intergenic 35.0%
AATGTAAGAGGGACATTTGT+TGG + chr6_2:6044447-6044466 Msa0907440:three_prime_UTR 35.0%
! CCATCTGTTTCTTGACACTT+AGG - chr6_2:6039922-6039941 None:intergenic 40.0%
CCTAAGTGTCAAGAAACAGA+TGG + chr6_2:6039919-6039938 Msa0907440:CDS 40.0%
TAATGGAGCTTCATTTCCTG+GGG + chr6_2:6039957-6039976 Msa0907440:CDS 40.0%
TTGCGTCAAAAAGTTGGGAA+TGG + chr6_2:6040035-6040054 Msa0907440:CDS 40.0%
AAAAAGTTGGGAATGGTACC+TGG + chr6_2:6040042-6040061 Msa0907440:CDS 40.0%
AGGCAATTGAGTTCATGATC+AGG + chr6_2:6040103-6040122 Msa0907440:CDS 40.0%
! AGTTCATGATCAGGTTTTCG+AGG + chr6_2:6040112-6040131 Msa0907440:CDS 40.0%
! GTTCATGATCAGGTTTTCGA+GGG + chr6_2:6040113-6040132 Msa0907440:CDS 40.0%
ATCTCCCATAAGACTTCCAT+AGG - chr6_2:6040154-6040173 None:intergenic 40.0%
! AGTCTTATGGGAGATACCTT+TGG + chr6_2:6040159-6040178 Msa0907440:CDS 40.0%
GTCTTATGGGAGATACCTTT+GGG + chr6_2:6040160-6040179 Msa0907440:CDS 40.0%
! GGAGATACCTTTGGGAAATA+CGG + chr6_2:6040168-6040187 Msa0907440:CDS 40.0%
! TGCTTTTCCGTATTTCCCAA+AGG - chr6_2:6040178-6040197 None:intergenic 40.0%
CTCACGTCTAAACAGATCAA+TGG - chr6_2:6040355-6040374 None:intergenic 40.0%
! ATTCGCTTTAAGCTGACCAA+AGG - chr6_2:6040545-6040564 None:intergenic 40.0%
TTGGTCAGCTTAAAGCGAAT+TGG + chr6_2:6040545-6040564 Msa0907440:CDS 40.0%
TAGGAAGATGACTCAAACAC+TGG + chr6_2:6041078-6041097 Msa0907440:intron 40.0%
AAGATGACTCAAACACTGGA+TGG + chr6_2:6041082-6041101 Msa0907440:intron 40.0%
! TGTTCAGGTTATGTGATAGG+AGG + chr6_2:6041448-6041467 Msa0907440:intron 40.0%
CTAAACTCTCGAGTGCAAAT+TGG + chr6_2:6041535-6041554 Msa0907440:intron 40.0%
!! TTGAGCACTGGTAATGATAC+AGG - chr6_2:6041751-6041770 None:intergenic 40.0%
!! TGTGTTAAAGAAGTGTCGCA+TGG - chr6_2:6041780-6041799 None:intergenic 40.0%
ACATTCAGCTGCATTATCTG+TGG + chr6_2:6041797-6041816 Msa0907440:intron 40.0%
! GTTCTTTTCCTTGTCATTGC+TGG + chr6_2:6041870-6041889 Msa0907440:CDS 40.0%
! TCTTTTCCTTGTCATTGCTG+GGG + chr6_2:6041872-6041891 Msa0907440:CDS 40.0%
GTAATGATAGGGAAGAGTCT+GGG - chr6_2:6041939-6041958 None:intergenic 40.0%
AGTAATGATAGGGAAGAGTC+TGG - chr6_2:6041940-6041959 None:intergenic 40.0%
ATATAAGCTGTCATCAGCAC+AGG - chr6_2:6041999-6042018 None:intergenic 40.0%
!!! GGGAACTGGTTTTTAAGCAA+AGG - chr6_2:6042054-6042073 None:intergenic 40.0%
GATTTCCATGAAGAAGGTTG+AGG + chr6_2:6042127-6042146 Msa0907440:intron 40.0%
TAAGACCTCAACCTTCTTCA+TGG - chr6_2:6042135-6042154 None:intergenic 40.0%
TTCATGGATGTATTGTCTGG+TGG + chr6_2:6042386-6042405 Msa0907440:intron 40.0%
! CACTGAAGAGCATAGAGTAA+GGG - chr6_2:6042505-6042524 None:intergenic 40.0%
! ACACTGAAGAGCATAGAGTA+AGG - chr6_2:6042506-6042525 None:intergenic 40.0%
! TACGTACTGACAAGCTTCTT+TGG + chr6_2:6042525-6042544 Msa0907440:CDS 40.0%
! ACGTACTGACAAGCTTCTTT+GGG + chr6_2:6042526-6042545 Msa0907440:CDS 40.0%
GAGTTCCTTCACCAAATAGA+AGG - chr6_2:6042554-6042573 None:intergenic 40.0%
! TAGGTATGAAATTTGCTCCG+AGG - chr6_2:6042809-6042828 None:intergenic 40.0%
!! TGGGTTATTTTCCAGTTCTC+TGG + chr6_2:6042834-6042853 Msa0907440:CDS 40.0%
! CTAAGTTGACAGAAAAGCAG+TGG + chr6_2:6043226-6043245 Msa0907440:intron 40.0%
TCGGAGAAAACTTCGTCTAA+GGG - chr6_2:6043653-6043672 None:intergenic 40.0%
! AGTTTTCTCCGACATTGAGA+TGG + chr6_2:6043661-6043680 Msa0907440:intron 40.0%
AGAGAAAAAGGACTCTGACA+GGG - chr6_2:6043734-6043753 None:intergenic 40.0%
AAGAGAAAAAGGACTCTGAC+AGG - chr6_2:6043735-6043754 None:intergenic 40.0%
! TATGTTGTATCGATCCCTGT+AGG - chr6_2:6043902-6043921 None:intergenic 40.0%
! GTCTGTCCTTATGATAGTGA+TGG + chr6_2:6043945-6043964 Msa0907440:CDS 40.0%
ACCATGTCCATATACAGCTT+CGG - chr6_2:6044270-6044289 None:intergenic 40.0%
!! ATTGAAAGTGTACCGGCTAA+AGG + chr6_2:6044477-6044496 Msa0907440:three_prime_UTR 40.0%
! TGGTCAAGTTCAAGCAGTTT+TGG + chr6_2:6044532-6044551 Msa0907440:three_prime_UTR 40.0%
! GGTCAAGTTCAAGCAGTTTT+GGG + chr6_2:6044533-6044552 Msa0907440:three_prime_UTR 40.0%
!! GCATTAGCTACAAGAGCATC+AGG - chr6_2:6039850-6039869 None:intergenic 45.0%
GACAAATTGAAAACAGCCCC+AGG - chr6_2:6039976-6039995 None:intergenic 45.0%
!! AGTTATTGGTGCTGGGATCA+TGG + chr6_2:6040002-6040021 Msa0907440:CDS 45.0%
!! GTTATTGGTGCTGGGATCAT+GGG + chr6_2:6040003-6040022 Msa0907440:CDS 45.0%
! TCCCAACTTTTTGACGCAAG+CGG - chr6_2:6040034-6040053 None:intergenic 45.0%
AGGATTATGGCAAGAAGACC+AGG - chr6_2:6040063-6040082 None:intergenic 45.0%
GCAGGGAATCTTTCTTCCTA+TGG + chr6_2:6040135-6040154 Msa0907440:CDS 45.0%
! TGGGAAATACGGAAAAGCAC+TGG + chr6_2:6040179-6040198 Msa0907440:CDS 45.0%
TGATCTGTTTAGACGTGAGC+AGG + chr6_2:6040356-6040375 Msa0907440:intron 45.0%
GCAGGTTGCATGATTCAGTT+TGG + chr6_2:6040374-6040393 Msa0907440:intron 45.0%
!! GTGATTTCTGGAACGACTTC+AGG + chr6_2:6040419-6040438 Msa0907440:CDS 45.0%
!! ATTTCTGGAACGACTTCAGG+TGG + chr6_2:6040422-6040441 Msa0907440:CDS 45.0%
ATCCTTCAAGGATACCAGGA+TGG - chr6_2:6040454-6040473 None:intergenic 45.0%
ATCCTGGTATCCTTGAAGGA+TGG + chr6_2:6040453-6040472 Msa0907440:CDS 45.0%
AACCATCCTTCAAGGATACC+AGG - chr6_2:6040458-6040477 None:intergenic 45.0%
GGTATCCTTGAAGGATGGTT+TGG + chr6_2:6040458-6040477 Msa0907440:CDS 45.0%
!! AAGGATGGTTTGGTGTCCAT+TGG + chr6_2:6040468-6040487 Msa0907440:CDS 45.0%
!! ACTTGCTGTGTTTGGACCTT+TGG + chr6_2:6040526-6040545 Msa0907440:CDS 45.0%
GACCAAAATGTGTGACGAAG+AGG + chr6_2:6040944-6040963 Msa0907440:intron 45.0%
! CTCCTCTTCGTCACACATTT+TGG - chr6_2:6040949-6040968 None:intergenic 45.0%
TGTGTGACGAAGAGGAGTTA+AGG + chr6_2:6040952-6040971 Msa0907440:intron 45.0%
GTGTGACGAAGAGGAGTTAA+GGG + chr6_2:6040953-6040972 Msa0907440:intron 45.0%
GACTCAAACACTGGATGGTA+TGG + chr6_2:6041087-6041106 Msa0907440:intron 45.0%
TTTCTTCACCCAGTTTGGGA+CGG - chr6_2:6041188-6041207 None:intergenic 45.0%
CAGGTTATGTGATAGGAGGA+TGG + chr6_2:6041452-6041471 Msa0907440:intron 45.0%
! CTTTTCCTTGTCATTGCTGG+GGG + chr6_2:6041873-6041892 Msa0907440:CDS 45.0%
! TTTTCCTTGTCATTGCTGGG+GGG + chr6_2:6041874-6041893 Msa0907440:CDS 45.0%
ATGGAATGAAGTGATGGCTG+TGG - chr6_2:6042170-6042189 None:intergenic 45.0%
ATGAACTGGAGGATTCCTCA+CGG + chr6_2:6042457-6042476 Msa0907440:CDS 45.0%
! GGGTTCCTTCTATTTGGTGA+AGG + chr6_2:6042546-6042565 Msa0907440:CDS 45.0%
GCATTGAGGGTCAACATAGA+TGG + chr6_2:6042696-6042715 Msa0907440:CDS 45.0%
GAGGAAGATAGTGCCAACAA+GGG - chr6_2:6042790-6042809 None:intergenic 45.0%
CTTGTTGGCACTATCTTCCT+CGG + chr6_2:6042789-6042808 Msa0907440:CDS 45.0%
TTCCAGCTGCAATCACTTTG+AGG + chr6_2:6042889-6042908 Msa0907440:CDS 45.0%
!! CAATCACTTTGAGGTGAGTC+TGG + chr6_2:6042898-6042917 Msa0907440:intron 45.0%
! TGGCTGGCTATTCTGAGTTT+AGG + chr6_2:6043246-6043265 Msa0907440:intron 45.0%
CTGATGTCTAGCATGGTACA+AGG - chr6_2:6043602-6043621 None:intergenic 45.0%
CTTGTACCATGCTAGACATC+AGG + chr6_2:6043600-6043619 Msa0907440:intron 45.0%
CGGAGAAAACTTCGTCTAAG+GGG - chr6_2:6043652-6043671 None:intergenic 45.0%
GTCGGAGAAAACTTCGTCTA+AGG - chr6_2:6043654-6043673 None:intergenic 45.0%
GTCAATGGCCATCTCAATGT+CGG - chr6_2:6043672-6043691 None:intergenic 45.0%
GGCCATTGACATATGATAGC+AGG + chr6_2:6043682-6043701 Msa0907440:intron 45.0%
AAAGGACTCTGACAGGGTTT+GGG - chr6_2:6043728-6043747 None:intergenic 45.0%
AAAAGGACTCTGACAGGGTT+TGG - chr6_2:6043729-6043748 None:intergenic 45.0%
! CAGAGTCCTTTTTCTCTTCC+AGG + chr6_2:6043737-6043756 Msa0907440:intron 45.0%
! AGTCCTTTTTCTCTTCCAGG+AGG + chr6_2:6043740-6043759 Msa0907440:intron 45.0%
! CTTTTTCTCTTCCAGGAGGA+GGG + chr6_2:6043744-6043763 Msa0907440:intron 45.0%
!! GGCAGTTTTGTCAAATGCTG+TGG + chr6_2:6043966-6043985 Msa0907440:CDS 45.0%
! TACTGTGGGCTATCAGATCA+AGG - chr6_2:6044050-6044069 None:intergenic 45.0%
TCCGAAGCTGTATATGGACA+TGG + chr6_2:6044266-6044285 Msa0907440:three_prime_UTR 45.0%
GCAACAAATATGTAGTCGGC+TGG - chr6_2:6044361-6044380 None:intergenic 45.0%
GGAGATGAGACCCAGAATAT+AGG - chr6_2:6044421-6044440 None:intergenic 45.0%
!! TGTACCGGCTAAAGGACTAA+AGG + chr6_2:6044485-6044504 Msa0907440:three_prime_UTR 45.0%
CGTTCCTTTAGTCCTTTAGC+CGG - chr6_2:6044492-6044511 None:intergenic 45.0%
AAAGGACTAAAGGAACGTGC+CGG + chr6_2:6044495-6044514 Msa0907440:three_prime_UTR 45.0%
GACCATTCTTTCACAACCAC+CGG - chr6_2:6044517-6044536 None:intergenic 45.0%
!!! TATAAAATTATTTTTTTTAG+AGG + chr6_2:6044119-6044138 Msa0907440:intron 5.0%
!!! ATAAAATTATTTTTTTTAGA+GGG + chr6_2:6044120-6044139 Msa0907440:intron 5.0%
TCCACCACAGTTATTGGTGC+TGG + chr6_2:6039994-6040013 Msa0907440:CDS 50.0%
! CCACCACAGTTATTGGTGCT+GGG + chr6_2:6039995-6040014 Msa0907440:CDS 50.0%
GATCCCAGCACCAATAACTG+TGG - chr6_2:6040001-6040020 None:intergenic 50.0%
! CCCAACTTTTTGACGCAAGC+GGG - chr6_2:6040033-6040052 None:intergenic 50.0%
CCCGCTTGCGTCAAAAAGTT+GGG + chr6_2:6040030-6040049 Msa0907440:CDS 50.0%
!! ATGATCAGGTTTTCGAGGGC+AGG + chr6_2:6040117-6040136 Msa0907440:CDS 50.0%
!! TGATCAGGTTTTCGAGGGCA+GGG + chr6_2:6040118-6040137 Msa0907440:CDS 50.0%
TCAGGTGGAATTCACCATCC+TGG + chr6_2:6040437-6040456 Msa0907440:CDS 50.0%
CACCATCCTGGTATCCTTGA+AGG + chr6_2:6040449-6040468 Msa0907440:CDS 50.0%
GGACACCAAACCATCCTTCA+AGG - chr6_2:6040466-6040485 None:intergenic 50.0%
!! GATGGTTTGGTGTCCATTGG+TGG + chr6_2:6040471-6040490 Msa0907440:CDS 50.0%
!! TTTGGTGTCCATTGGTGGAC+TGG + chr6_2:6040476-6040495 Msa0907440:CDS 50.0%
!! TTGGTGTCCATTGGTGGACT+GGG + chr6_2:6040477-6040496 Msa0907440:CDS 50.0%
TGATTCCTTCCGTCCCAAAC+TGG + chr6_2:6041176-6041195 Msa0907440:intron 50.0%
GATTCCTTCCGTCCCAAACT+GGG + chr6_2:6041177-6041196 Msa0907440:intron 50.0%
GCATGGACATAGTTGAGCAC+TGG - chr6_2:6041763-6041782 None:intergenic 50.0%
TCTGGCTGTGCACCATTAGT+CGG + chr6_2:6042337-6042356 Msa0907440:intron 50.0%
TGTGCACCATTAGTCGGAAC+TGG + chr6_2:6042343-6042362 Msa0907440:intron 50.0%
GTGCACCATTAGTCGGAACT+GGG + chr6_2:6042344-6042363 Msa0907440:intron 50.0%
GTCTTCCCAGTTCCGACTAA+TGG - chr6_2:6042352-6042371 None:intergenic 50.0%
TTCCTCATCGAGAAGGCCTT+TGG + chr6_2:6042728-6042747 Msa0907440:CDS 50.0%
AACCAAAGGCCTTCTCGATG+AGG - chr6_2:6042733-6042752 None:intergenic 50.0%
CGAGGAAGATAGTGCCAACA+AGG - chr6_2:6042791-6042810 None:intergenic 50.0%
!! TTCCAGTTCTCTGGAGCAAC+AGG + chr6_2:6042843-6042862 Msa0907440:CDS 50.0%
CACCTCAAAGTGATTGCAGC+TGG - chr6_2:6042894-6042913 None:intergenic 50.0%
GTTGACAGAAAAGCAGTGGC+TGG + chr6_2:6043230-6043249 Msa0907440:intron 50.0%
GTTGCACCTGATGTCTAGCA+TGG - chr6_2:6043609-6043628 None:intergenic 50.0%
AAGGACTCTGACAGGGTTTG+GGG - chr6_2:6043727-6043746 None:intergenic 50.0%
CCTCCTCCTGGAAGAGAAAA+AGG - chr6_2:6043746-6043765 None:intergenic 50.0%
! CCTTTTTCTCTTCCAGGAGG+AGG + chr6_2:6043743-6043762 Msa0907440:intron 50.0%
TGCCGGTGGTTGTGAAAGAA+TGG + chr6_2:6044512-6044531 Msa0907440:three_prime_UTR 50.0%
!! GCTACAAGAGCATCAGGTGC+AGG - chr6_2:6039844-6039863 None:intergenic 55.0%
CCCAGCACCAATAACTGTGG+TGG - chr6_2:6039998-6040017 None:intergenic 55.0%
GCCCGCTTGCGTCAAAAAGT+TGG + chr6_2:6040029-6040048 Msa0907440:CDS 55.0%
! TTCACCCAGTTTGGGACGGA+AGG - chr6_2:6041184-6041203 None:intergenic 55.0%
AGATCCCCCCAGCAATGACA+AGG - chr6_2:6041881-6041900 None:intergenic 55.0%
AGGATTCCTCACGGATGCGT+GGG + chr6_2:6042466-6042485 Msa0907440:CDS 55.0%
CACCTGTTGCTCCAGAGAAC+TGG - chr6_2:6042848-6042867 None:intergenic 55.0%
ATGTGCGCCCAGTCCACCAA+TGG - chr6_2:6040487-6040506 None:intergenic 60.0%
GAGGATTCCTCACGGATGCG+TGG + chr6_2:6042465-6042484 Msa0907440:CDS 60.0%
GGATTCCTCACGGATGCGTG+GGG + chr6_2:6042467-6042486 Msa0907440:CDS 60.0%
! CTTCGTCTAAGGGGCGTGCA+AGG - chr6_2:6043643-6043662 None:intergenic 60.0%
GGACTAAAGGAACGTGCCGG+TGG + chr6_2:6044498-6044517 Msa0907440:three_prime_UTR 60.0%
CACAACCCCACGCATCCGTG+AGG - chr6_2:6042475-6042494 None:intergenic 65.0%
ATTGGGGGGAGCCCTCCTCC+TGG - chr6_2:6043758-6043777 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 6039814 6044702 6039814 ID=Msa0907440;Name=Msa0907440
chr6_2 mRNA 6039814 6044702 6039814 ID=Msa0907440-mRNA-1;Parent=Msa0907440;Name=Msa0907440-mRNA-1;_AED=0.30;_eAED=0.30;_QI=12|1|1|1|0.8|0.66|6|565|463
chr6_2 exon 6039814 6040261 6039814 ID=Msa0907440-mRNA-1:exon:1929;Parent=Msa0907440-mRNA-1
chr6_2 exon 6040414 6040566 6040414 ID=Msa0907440-mRNA-1:exon:1930;Parent=Msa0907440-mRNA-1
chr6_2 exon 6041829 6042032 6041829 ID=Msa0907440-mRNA-1:exon:1931;Parent=Msa0907440-mRNA-1
chr6_2 exon 6042442 6042910 6042442 ID=Msa0907440-mRNA-1:exon:1932;Parent=Msa0907440-mRNA-1
chr6_2 exon 6043906 6044036 6043906 ID=Msa0907440-mRNA-1:exon:1933;Parent=Msa0907440-mRNA-1
chr6_2 exon 6044139 6044702 6044139 ID=Msa0907440-mRNA-1:exon:1934;Parent=Msa0907440-mRNA-1
chr6_2 five_prime_UTR 6039814 6039825 6039814 ID=Msa0907440-mRNA-1:five_prime_utr;Parent=Msa0907440-mRNA-1
chr6_2 CDS 6039826 6040261 6039826 ID=Msa0907440-mRNA-1:cds;Parent=Msa0907440-mRNA-1
chr6_2 CDS 6040414 6040566 6040414 ID=Msa0907440-mRNA-1:cds;Parent=Msa0907440-mRNA-1
chr6_2 CDS 6041829 6042032 6041829 ID=Msa0907440-mRNA-1:cds;Parent=Msa0907440-mRNA-1
chr6_2 CDS 6042442 6042910 6042442 ID=Msa0907440-mRNA-1:cds;Parent=Msa0907440-mRNA-1
chr6_2 CDS 6043906 6044035 6043906 ID=Msa0907440-mRNA-1:cds;Parent=Msa0907440-mRNA-1
chr6_2 three_prime_UTR 6044036 6044036 6044036 ID=Msa0907440-mRNA-1:three_prime_utr;Parent=Msa0907440-mRNA-1
chr6_2 three_prime_UTR 6044139 6044702 6044139 ID=Msa0907440-mRNA-1:three_prime_utr;Parent=Msa0907440-mRNA-1
Gene Sequence

>Msa0907440

ATGACAATTGGAGCTCCTGCACCTGATGCTCTTGTAGCTAATGCAAAAACAAGGAAGAAAAAGGAAGTTGTTGATGAAAATGCACCTTTGTTACCTAAGTGTCAAGAAACAGATGGTGATTTTCATGAATTTAATGGAGCTTCATTTCCTGGGGCTGTTTTCAATTTGTCCACCACAGTTATTGGTGCTGGGATCATGGGCTTGCCCGCTTGCGTCAAAAAGTTGGGAATGGTACCTGGTCTTCTTGCCATAATCCTAACAGCATTATTGACAGAGAAGGCAATTGAGTTCATGATCAGGTTTTCGAGGGCAGGGAATCTTTCTTCCTATGGAAGTCTTATGGGAGATACCTTTGGGAAATACGGAAAAGCACTGGTAGAGATATGTGTTATAATCACTAACGTTGGTATTCTGATTGTTTACATGATCATTATTGGTGATGTGATTTCTGGAACGACTTCAGGTGGAATTCACCATCCTGGTATCCTTGAAGGATGGTTTGGTGTCCATTGGTGGACTGGGCGCACATTTGTTGTTGTTTTTACAACACTTGCTGTGTTTGGACCTTTGGTCAGCTTAAAGCGAATTGATTCATTGAGATTCACATCTGCATTATCAATTGGATTAGCAGTTCTTTTCCTTGTCATTGCTGGGGGGATCTCAATTATCAAGATTATTAGTGGAAGCATTGGGATGCCCAGACTCTTCCCTATCATTACTGATGTAGATTCTGTTTTTGATCTATTCACTGTAGTTCCTGTGCTGATGACAGCTTATATCTGTCACTACAATGTTCATAACATTGATAATGAACTGGAGGATTCCTCACGGATGCGTGGGGTTGTGCGTACTTCCCTTACTCTATGCTCTTCAGTGTACGTACTGACAAGCTTCTTTGGGTTCCTTCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCCAATTTTGATACTGATTTTGGAATTCCTTTTGGTTCTGCTCTTAATGATGCTGTTCGTTTTAGCTATGTTGCGCATCTTGTGCTTGTATTTCCTGTAGTTTTCTATGCATTGAGGGTCAACATAGATGGTCTGATATTTTCCTCATCGAGAAGGCCTTTGGTTGTTGATAACTTCAGATTTGCATCAATTACTATTGCCCTTGTTGGCACTATCTTCCTCGGAGCAAATTTCATACCTAGCATTTGGGTTATTTTCCAGTTCTCTGGAGCAACAGGTGCTGTTTGTATAGCATTCATATTTCCAGCTGCAATCACTTTGAGGGATCGATACAACATAGCAACTAAAAAAGACAAGATTCTGTCTGTCCTTATGATAGTGATGGCAGTTTTGTCAAATGCTGTGGCTATATACAGTGATGCTTCTGCTTTGATCAACAAGAAGGAAACTTAA
Protein sequence

>Msa0907440

MTIGAPAPDALVANAKTRKKKEVVDENAPLLPKCQETDGDFHEFNGASFPGAVFNLSTTVIGAGIMGLPACVKKLGMVPGLLAIILTALLTEKAIEFMIRFSRAGNLSSYGSLMGDTFGKYGKALVEICVIITNVGILIVYMIIIGDVISGTTSGGIHHPGILEGWFGVHWWTGRTFVVVFTTLAVFGPLVSLKRIDSLRFTSALSIGLAVLFLVIAGGISIIKIISGSIGMPRLFPIITDVDSVFDLFTVVPVLMTAYICHYNVHNIDNELEDSSRMRGVVRTSLTLCSSVYVLTSFFGFLLFGEGTLDDVLANFDTDFGIPFGSALNDAVRFSYVAHLVLVFPVVFYALRVNIDGLIFSSSRRPLVVDNFRFASITIALVGTIFLGANFIPSIWVIFQFSGATGAVCIAFIFPAAITLRDRYNIATKKDKILSVLMIVMAVLSNAVAIYSDASALINKKET*