AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030030 MtrunA17_Chr1g0187091 95.365 561 26 0 1 561 1 561 0.0 1112
Msa0030030 MtrunA17_Chr5g0395051 35.314 303 133 8 207 462 94 380 7.07e-34 137
Msa0030030 MtrunA17_Chr5g0395051 58.750 80 33 0 1 80 9 88 3.41e-22 101
Msa0030030 MtrunA17_Chr6g0468301 55.000 80 36 0 1 80 9 88 1.05e-21 92.0
Msa0030030 MtrunA17_Chr6g0468291 43.478 92 49 2 335 424 3 93 1.65e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 141 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTGTATGCTTCTGTTTC+TGG 0.077711 1_1:-55945193 Msa0030030:five_prime_UTR
CTCATTTGATGGATAATTTA+AGG 0.100332 1_1:-55944702 Msa0030030:five_prime_UTR
TTAAATAAACATACCTATTT+AGG 0.154959 1_1:-55939972 Msa0030030:three_prime_UTR
AACAAATCTTCTACTATTTC+AGG 0.180626 1_1:-55943317 Msa0030030:intron
CGCAATTATCACTTCTTGTT+TGG 0.221275 1_1:+55942462 None:intergenic
GATGGTATTGGCTTGGGATT+TGG 0.227323 1_1:-55944577 Msa0030030:five_prime_UTR
ACAATATGTGGACTGAAAAT+TGG 0.244513 1_1:+55942216 None:intergenic
ATAAGAAAATGATAGGTTTC+TGG 0.247563 1_1:-55940220 Msa0030030:three_prime_UTR
GAATCTCTCAATCTCGAAAA+AGG 0.270101 1_1:+55941793 None:intergenic
GCCAGGATCTGGTGATAATT+TGG 0.270512 1_1:-55943483 Msa0030030:intron
ATGGTATTGGCTTGGGATTT+GGG 0.285962 1_1:-55944576 Msa0030030:five_prime_UTR
AATGAGTTGATTGTCATAAC+TGG 0.290846 1_1:-55944780 Msa0030030:five_prime_UTR
TTAAGACTGAAACCTTTATC+TGG 0.299755 1_1:+55944128 None:intergenic
TTTGTGAAATACTCATTTGA+TGG 0.304301 1_1:-55944713 Msa0030030:five_prime_UTR
ATGACTTCAAAACCAGTCTT+TGG 0.306670 1_1:+55944278 None:intergenic
CCTGTATCATGTTCTTGATA+TGG 0.316401 1_1:+55943873 None:intergenic
ATCCTCTATCTGAAATAGTT+TGG 0.324431 1_1:-55944154 Msa0030030:CDS
TCTTGATATGGTGTATATTC+TGG 0.346161 1_1:+55943885 None:intergenic
TGGCCTGATGGTATTGGCTT+GGG 0.347396 1_1:-55944583 Msa0030030:five_prime_UTR
TGTTTGTTGGCATTGTTTGA+TGG 0.368003 1_1:+55941732 None:intergenic
TTGATGAGACATTCTTGTTC+CGG 0.369355 1_1:+55942177 None:intergenic
AGCTAAAATATCTGAGATAA+TGG 0.370067 1_1:-55943348 Msa0030030:CDS
TCGGGTTGGCCTGATGGTAT+TGG 0.371402 1_1:-55944589 Msa0030030:five_prime_UTR
CCTTCTTTGTAATGTTTCCT+TGG 0.372511 1_1:+55942835 None:intergenic
AAAGTACACACCTCTTTGTT+TGG 0.378695 1_1:+55945369 None:intergenic
ATGAAACATCACATTAATAT+AGG 0.381042 1_1:+55944751 None:intergenic
ACATAAAAGATTCCAGTCTA+AGG 0.388544 1_1:+55944963 None:intergenic
ATAGTTTGGACTCCAGATAA+AGG 0.389342 1_1:-55944140 Msa0030030:CDS
TGCTGGAGGAACATCTGATT+TGG 0.391359 1_1:-55943447 Msa0030030:CDS
GTAAATTACCAACTGGACTT+TGG 0.394116 1_1:+55942905 None:intergenic
TCAAGATGAGGAGAAGTCTT+TGG 0.394857 1_1:-55942320 Msa0030030:CDS
CGACTCTCATTCTTATTGTA+TGG 0.395854 1_1:+55942541 None:intergenic
TTGGAGAAAATTAACTCTGC+TGG 0.405206 1_1:-55943464 Msa0030030:CDS
ATTCTCTTCAGTGTCAAGTT+AGG 0.410731 1_1:-55944523 Msa0030030:intron
TATTTCAGATAGAGGATCAT+TGG 0.411235 1_1:+55944160 None:intergenic
GAACACATGATTGAAGATAA+AGG 0.411777 1_1:-55942751 Msa0030030:CDS
ATGTTTGTTTCACGTGATCA+TGG 0.420997 1_1:-55945124 Msa0030030:five_prime_UTR
AAAATATTGTGAATTTAGTA+AGG 0.424454 1_1:+55945083 None:intergenic
GTGAGATGCATCTTATTTCA+AGG 0.425141 1_1:+55944614 None:intergenic
TGGTAGACTATTCTGTTTGT+TGG 0.430093 1_1:+55941719 None:intergenic
TCCATGTTTGCAAAGAGGTT+AGG 0.431116 1_1:-55941757 Msa0030030:CDS
TCATGTCAATTTCCTTAGAC+TGG 0.431825 1_1:-55944975 Msa0030030:five_prime_UTR
GACCCTTGTAAGGCCATTGA+AGG 0.432085 1_1:+55942269 None:intergenic
TTGGCCTGATGGTATTGGCT+TGG 0.432109 1_1:-55944584 Msa0030030:five_prime_UTR
ATCATCCGGCATTAATCATT+CGG 0.432649 1_1:-55942701 Msa0030030:CDS
CGATGTTGAACCTAGTAGTA+TGG 0.433354 1_1:-55944060 Msa0030030:CDS
TCATAGCTCATTCATGAACT+TGG 0.436526 1_1:-55942377 Msa0030030:CDS
GGAGAATTTAATGAACCATT+GGG 0.439177 1_1:-55943411 Msa0030030:CDS
GGCCATTGAAGGTGGCGATC+AGG 0.439496 1_1:+55942280 None:intergenic
TGAACTTGTAAATTACCAAC+TGG 0.441384 1_1:+55942898 None:intergenic
ATCCTGATCGCCACCTTCAA+TGG 0.442121 1_1:-55942282 Msa0030030:CDS
AGCTGCTTCAATTTCAATGC+AGG 0.443120 1_1:+55943367 None:intergenic
GTGTTCTTCTTTACATCCTC+AGG 0.443827 1_1:-55942119 Msa0030030:intron
GTCCAAACTATTTCAGATAG+AGG 0.446372 1_1:+55944152 None:intergenic
AGGAGAATTTAATGAACCAT+TGG 0.446595 1_1:-55943412 Msa0030030:CDS
TTCCAGAAACAGAAGCATAC+AGG 0.449645 1_1:+55945191 None:intergenic
TTGACGCGTTAATGCTTCAT+AGG 0.450951 1_1:-55944818 Msa0030030:five_prime_UTR
TAAACATACCTATTTAGGTA+TGG 0.452955 1_1:-55939967 None:intergenic
CTTCTCATCTTTAAGACCAA+TGG 0.453090 1_1:+55941861 None:intergenic
TTGTAATGTTTCCTTGGTGA+AGG 0.453555 1_1:+55942841 None:intergenic
AAAGAGGCTTGTTCTTCCAT+TGG 0.453603 1_1:-55941877 Msa0030030:CDS
GCATCGATACTTCTTATTGA+AGG 0.456704 1_1:-55944927 Msa0030030:five_prime_UTR
GGAACATATTTGATATCATC+CGG 0.456936 1_1:-55942715 Msa0030030:CDS
AATTTACAAGTTCATCAAGA+TGG 0.458602 1_1:-55942889 Msa0030030:CDS
CCACCTTCAATGGCCTTACA+AGG 0.462556 1_1:-55942272 Msa0030030:CDS
CCAAGGAAACATTACAAAGA+AGG 0.463419 1_1:-55942835 Msa0030030:CDS
TTGGTTTCAAACATGACTAA+AGG 0.464068 1_1:-55942358 Msa0030030:CDS
GATAAAGGTTCTAATCCTCT+TGG 0.465705 1_1:-55942736 Msa0030030:CDS
GGAACATCTGATTTGGCAAA+TGG 0.468310 1_1:-55943440 Msa0030030:CDS
GGACTGAAAATTGGATTTGA+AGG 0.473417 1_1:+55942225 None:intergenic
TCTGGAGCTTGACCCTTGTA+AGG 0.474736 1_1:+55942259 None:intergenic
ACAATATGCTGATAACCAAT+TGG 0.476134 1_1:-55941938 Msa0030030:CDS
AAACATACCTATTTAGGTAT+GGG 0.476206 1_1:-55939966 None:intergenic
TGATTTGGCAAATGGTCAAA+AGG 0.486780 1_1:-55943432 Msa0030030:CDS
GTGCTCCTACTCAAGGTCTC+AGG 0.488647 1_1:-55944550 Msa0030030:five_prime_UTR
CTTGAGTACTCAGCAGTAGA+AGG 0.489690 1_1:+55944329 None:intergenic
TGTTTGTTTCACGTGATCAT+GGG 0.491716 1_1:-55945123 Msa0030030:five_prime_UTR
TCACACTCGGGTTGGCCTGA+TGG 0.502802 1_1:-55944595 Msa0030030:five_prime_UTR
GAAACATTACAAAGAAGGCT+TGG 0.503191 1_1:-55942830 Msa0030030:CDS
CTCAAAACACTGACAATATG+TGG 0.503790 1_1:+55942204 None:intergenic
CACAAATATTCTTCTCCCAA+TGG 0.514033 1_1:+55943396 None:intergenic
AATATCTGAGATAATGGAAG+AGG 0.514653 1_1:-55943342 Msa0030030:CDS
ATTGAGAGATTCAGAGGCAA+TGG 0.519119 1_1:-55941782 Msa0030030:CDS
AATCCCAAGCCAATACCATC+AGG 0.525771 1_1:+55944580 None:intergenic
CATTGGTCTTAAAGATGAGA+AGG 0.529065 1_1:-55941860 Msa0030030:CDS
TGGTGTATATTCTGGAAAGA+TGG 0.529676 1_1:+55943893 None:intergenic
ATTTACAAGTTCATCAAGAT+GGG 0.530667 1_1:-55942888 Msa0030030:CDS
TTATTCTAGTCAATGTCATA+AGG 0.530823 1_1:-55944249 Msa0030030:CDS
TGGGAGTGTGCTCCTACTCA+AGG 0.531589 1_1:-55944557 Msa0030030:five_prime_UTR
AAGAAAATGAAACCAAAGAC+TGG 0.532411 1_1:-55944290 Msa0030030:exon
TCGCTTGTTGAATTCCTAGC+AGG 0.535881 1_1:+55943924 None:intergenic
TAGCATCATCTCATTGACCT+TGG 0.536137 1_1:+55942564 None:intergenic
CCATATCAAGAACATGATAC+AGG 0.536521 1_1:-55943873 Msa0030030:intron
TATGAAAGAATATTAGTACA+TGG 0.541481 1_1:+55945221 None:intergenic
ACCTAACCTCTTTGCAAACA+TGG 0.543122 1_1:+55941756 None:intergenic
AAGTATACATAAATTGACTA+AGG 0.544426 1_1:+55945298 None:intergenic
AATAAGATGCATCTCACACT+CGG 0.548373 1_1:-55944608 Msa0030030:five_prime_UTR
AATATAGAATAGAAAAGATA+CGG 0.550149 1_1:+55945154 None:intergenic
TTCGAGATTGAGAGATTCAG+AGG 0.550691 1_1:-55941788 Msa0030030:CDS
CTAAGGAAATTGACATGACT+AGG 0.551663 1_1:+55944980 None:intergenic
AGAGCAAGAACCATACTACT+AGG 0.554225 1_1:+55944050 None:intergenic
AATGGAATTGTATATTGGGT+AGG 0.554982 1_1:+55940070 None:intergenic
AGATGGGTCTAAACTTAGCA+TGG 0.563633 1_1:-55942872 Msa0030030:CDS
TTGCAAACTGAGTCAAGTGC+AGG 0.567039 1_1:-55944221 Msa0030030:CDS
TGTACTGCAGGAAGACATCA+TGG 0.567554 1_1:-55940316 Msa0030030:intron
TTCAACATCGCGCAAAAGCG+AGG 0.569210 1_1:+55944073 None:intergenic
ATGGTGGTTGAAATAGAAGA+TGG 0.572650 1_1:-55942790 Msa0030030:CDS
TGGTTTCCATGTTTGCAAAG+AGG 0.574375 1_1:-55941762 Msa0030030:CDS
ACAAGAATGTCTCATCAAGT+AGG 0.578856 1_1:-55942172 Msa0030030:CDS
TGAGCTATGATGATTAACAT+AGG 0.579724 1_1:+55942390 None:intergenic
TTTGCGCATATAACAGCAAG+AGG 0.582464 1_1:+55943972 None:intergenic
ATTGGTCTTAAAGATGAGAA+GGG 0.585207 1_1:-55941859 Msa0030030:CDS
CTTCAACAGATACTCCTGCT+AGG 0.592036 1_1:-55943938 Msa0030030:CDS
GAGAAAATTAACTCTGCTGG+AGG 0.604426 1_1:-55943461 Msa0030030:CDS
CAGATCAACCAAAGTCCAGT+TGG 0.604525 1_1:-55942913 Msa0030030:CDS
GATGCATCTCACACTCGGGT+TGG 0.606974 1_1:-55944603 Msa0030030:five_prime_UTR
ATGAGTTGATTGTCATAACT+GGG 0.610790 1_1:-55944779 Msa0030030:five_prime_UTR
CCTTGTAAGGCCATTGAAGG+TGG 0.610795 1_1:+55942272 None:intergenic
AATTTGAGAAAATGAAGTAA+CGG 0.616414 1_1:+55944851 None:intergenic
GCGTCCGATCCGATGTGTGT+CGG 0.620727 1_1:-55944903 Msa0030030:five_prime_UTR
CAGCAACGTTAAATGAGTTG+AGG 0.626104 1_1:+55940282 None:intergenic
GGATACTAGTGTTGACAACA+TGG 0.626835 1_1:-55942809 Msa0030030:CDS
AAGAAGAACACCGTCTGCAG+AGG 0.634486 1_1:+55942131 None:intergenic
CAAGCAATAGCCTCTGCAGA+CGG 0.634882 1_1:-55942141 Msa0030030:CDS
GTTTGTTTCACGTGATCATG+GGG 0.636921 1_1:-55945122 Msa0030030:five_prime_UTR
AGATGAGAAGGGAAACAATG+AGG 0.641689 1_1:-55941848 Msa0030030:CDS
CTCACAATCTAGTCAAGATG+AGG 0.644826 1_1:-55942332 Msa0030030:CDS
ATTACGACACCGACACACAT+CGG 0.645224 1_1:+55944894 None:intergenic
ATCTTCTACAGGTTTATCTG+TGG 0.647818 1_1:+55944007 None:intergenic
TCAAGCCATGTTTACCTGTG+TGG 0.651284 1_1:+55941699 None:intergenic
CACCTTCAATGGCCTTACAA+GGG 0.652263 1_1:-55942271 Msa0030030:CDS
GACACCGACACACATCGGAT+CGG 0.654809 1_1:+55944899 None:intergenic
TATTTCCTAACCAAACAAAG+AGG 0.654876 1_1:-55945379 None:intergenic
TCGAACCTGAGACCTTGAGT+AGG 0.655490 1_1:+55944545 None:intergenic
ATAAGATGCATCTCACACTC+GGG 0.659150 1_1:-55944607 Msa0030030:five_prime_UTR
TGTTTCTGGAAATTCTACCA+CGG 0.659691 1_1:-55945179 Msa0030030:five_prime_UTR
GATATCAAATATGTTCCAAG+AGG 0.664662 1_1:+55942721 None:intergenic
AACAGAATAGTCTACCACAC+AGG 0.676350 1_1:-55941713 Msa0030030:intron
ATAGAAAAGATACGGTACCG+TGG 0.710931 1_1:+55945162 None:intergenic
TGGAACAAAATCCTTCACCA+AGG 0.714111 1_1:-55942852 Msa0030030:CDS
TACTAGTGTTGACAACATGG+TGG 0.817206 1_1:-55942806 Msa0030030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATACTCTTTTAATAAAT+TGG + chr1_1:55941718-55941737 None:intergenic 10.0%
!! AATATAGAATAGAAAAGATA+CGG + chr1_1:55940188-55940207 None:intergenic 15.0%
!! AAAATATTGTGAATTTAGTA+AGG + chr1_1:55940259-55940278 None:intergenic 15.0%
!! AAATTACTTGATTGAATTAT+AGG + chr1_1:55940904-55940923 None:intergenic 15.0%
!!! TCTATTAGTATTTTTTTTGT+TGG - chr1_1:55944198-55944217 Msa0030030:CDS 15.0%
!!! CTATTAGTATTTTTTTTGTT+GGG - chr1_1:55944199-55944218 Msa0030030:CDS 15.0%
!! AGATATAATTCAATAACAAA+TGG + chr1_1:55944393-55944412 None:intergenic 15.0%
!! AATATCTATAATCGAATAAA+GGG + chr1_1:55944915-55944934 None:intergenic 15.0%
!! AAATATCTATAATCGAATAA+AGG + chr1_1:55944916-55944935 None:intergenic 15.0%
!! ATCAAAAATAAGAAAATGAT+AGG - chr1_1:55945112-55945131 Msa0030030:five_prime_UTR 15.0%
!! AAATAGAAACAATTCAAAAA+TGG + chr1_1:55945290-55945309 None:intergenic 15.0%
!! TTAAATAAACATACCTATTT+AGG - chr1_1:55945367-55945386 Msa0030030:five_prime_UTR 15.0%
!!! CTCTTTCAATTTTCTATTTT+CGG - chr1_1:55940002-55940021 Msa0030030:three_prime_UTR 20.0%
!! AAGTATACATAAATTGACTA+AGG + chr1_1:55940044-55940063 None:intergenic 20.0%
!! TATGAAAGAATATTAGTACA+TGG + chr1_1:55940121-55940140 None:intergenic 20.0%
!! AATTTGAGAAAATGAAGTAA+CGG + chr1_1:55940491-55940510 None:intergenic 20.0%
!! ATGAAACATCACATTAATAT+AGG + chr1_1:55940591-55940610 None:intergenic 20.0%
!! AATTCAATCAAGTAATTTGA+TGG - chr1_1:55940906-55940925 Msa0030030:intron 20.0%
!!! TTGAGCAAAAAATGTTTTAA+AGG + chr1_1:55941821-55941840 None:intergenic 20.0%
!! ATCATGATAGTATCTTAAAA+TGG + chr1_1:55942085-55942104 None:intergenic 20.0%
!!! TTTAAGATACTATCATGATT+TGG - chr1_1:55942086-55942105 Msa0030030:intron 20.0%
!!! ATATAAATTTTCCTCAATCA+TGG - chr1_1:55942147-55942166 Msa0030030:CDS 20.0%
!!! GGATTTGTTTTTATTATCAT+TGG + chr1_1:55942757-55942776 None:intergenic 20.0%
!! TGATAATAAAAACAAATCCA+AGG - chr1_1:55942758-55942777 Msa0030030:CDS 20.0%
!!! TCATAATACTGAATTGTTTT+TGG - chr1_1:55942839-55942858 Msa0030030:CDS 20.0%
!! TTTACAAAATAGAATCAGTA+AGG - chr1_1:55943308-55943327 Msa0030030:intron 20.0%
!! ATGATTGTTATCTGAAAAAT+AGG - chr1_1:55943703-55943722 Msa0030030:intron 20.0%
!! AATATGACATCACAAAAAAA+TGG + chr1_1:55944498-55944517 None:intergenic 20.0%
!!! GTTTTAGAAAACTTGTATAT+GGG + chr1_1:55944722-55944741 None:intergenic 20.0%
!!! TGTTTTAGAAAACTTGTATA+TGG + chr1_1:55944723-55944742 None:intergenic 20.0%
!!! TTACGGTATTGAATAATTTT+TGG + chr1_1:55944783-55944802 None:intergenic 20.0%
!! TATTACAATTTACATGAACA+TGG - chr1_1:55944944-55944963 Msa0030030:five_prime_UTR 20.0%
!! CAAAAATGGAATTGTATATT+GGG + chr1_1:55945276-55945295 None:intergenic 20.0%
!! TCAAAAATGGAATTGTATAT+TGG + chr1_1:55945277-55945296 None:intergenic 20.0%
! TTTGTGAAATACTCATTTGA+TGG - chr1_1:55940626-55940645 Msa0030030:intron 25.0%
!! CTCATTTGATGGATAATTTA+AGG - chr1_1:55940637-55940656 Msa0030030:intron 25.0%
! TTGGAACAATATTTCATTTC+AGG - chr1_1:55940986-55941005 Msa0030030:intron 25.0%
! TTATTCTAGTCAATGTCATA+AGG - chr1_1:55941090-55941109 Msa0030030:intron 25.0%
! ATTAATTAAAGTGACACTAG+TGG + chr1_1:55941678-55941697 None:intergenic 25.0%
!! AGCTAAAATATCTGAGATAA+TGG - chr1_1:55941991-55942010 Msa0030030:intron 25.0%
! AACAAATCTTCTACTATTTC+AGG - chr1_1:55942022-55942041 Msa0030030:intron 25.0%
! TTTAGATATGCAAAAGAGAA+TGG + chr1_1:55942376-55942395 None:intergenic 25.0%
! AATTTACAAGTTCATCAAGA+TGG - chr1_1:55942450-55942469 Msa0030030:CDS 25.0%
! ATTTACAAGTTCATCAAGAT+GGG - chr1_1:55942451-55942470 Msa0030030:CDS 25.0%
! CATTAATCATTCGGAAAAAA+TGG - chr1_1:55942647-55942666 Msa0030030:CDS 25.0%
!! TTGAAGGAATTTTTAATCTC+TGG + chr1_1:55943101-55943120 None:intergenic 25.0%
! TGGCTATTGAGAAAATTTAT+AGG + chr1_1:55943251-55943270 None:intergenic 25.0%
! CAGTAATTCAAATGAGAAAT+TGG + chr1_1:55943360-55943379 None:intergenic 25.0%
!!! GAATTGTTTTATCAACAAAG+AGG - chr1_1:55943446-55943465 Msa0030030:CDS 25.0%
!!! CACATTATTGATTTACTTCA+TGG + chr1_1:55943683-55943702 None:intergenic 25.0%
! TTGATTCTATGACAATAAGA+AGG - chr1_1:55943830-55943849 Msa0030030:intron 25.0%
! AAAAATGGATATCTATGTGT+TGG + chr1_1:55944483-55944502 None:intergenic 25.0%
!! ATGTCATATTCATCTTTTTG+TGG - chr1_1:55944508-55944527 Msa0030030:intron 25.0%
!! ATATTCATCTTTTTGTGGTT+TGG - chr1_1:55944513-55944532 Msa0030030:intron 25.0%
!! GACATGTGAAAGTATATATT+AGG - chr1_1:55944535-55944554 Msa0030030:five_prime_UTR 25.0%
! TTTGATCTGCTAAAAAATGA+AGG - chr1_1:55944563-55944582 Msa0030030:five_prime_UTR 25.0%
! TTTATTTGTAAAACTGCTTC+AGG - chr1_1:55944617-55944636 Msa0030030:five_prime_UTR 25.0%
! TTATTTGTAAAACTGCTTCA+GGG - chr1_1:55944618-55944637 Msa0030030:five_prime_UTR 25.0%
!! CAACACAAGACAAAATTTTA+CGG + chr1_1:55944800-55944819 None:intergenic 25.0%
!!! GGATATCAACTTTTTTGTTT+TGG - chr1_1:55944965-55944984 Msa0030030:five_prime_UTR 25.0%
!! TTTTCTGTCATATCTTTAGT+TGG + chr1_1:55945091-55945110 None:intergenic 25.0%
! ATAAGAAAATGATAGGTTTC+TGG - chr1_1:55945119-55945138 Msa0030030:five_prime_UTR 25.0%
!!! ATCAAGACTTTTTTCAACAA+GGG + chr1_1:55945328-55945347 None:intergenic 25.0%
ACATAAAAGATTCCAGTCTA+AGG + chr1_1:55940379-55940398 None:intergenic 30.0%
!! AATGAGTTGATTGTCATAAC+TGG - chr1_1:55940559-55940578 Msa0030030:intron 30.0%
!! ATGAGTTGATTGTCATAACT+GGG - chr1_1:55940560-55940579 Msa0030030:intron 30.0%
! AATCAAAATTAGCCTGTGTA+GGG + chr1_1:55940968-55940987 None:intergenic 30.0%
AAGAAAATGAAACCAAAGAC+TGG - chr1_1:55941049-55941068 Msa0030030:intron 30.0%
TATTTCAGATAGAGGATCAT+TGG + chr1_1:55941182-55941201 None:intergenic 30.0%
! ATCCTCTATCTGAAATAGTT+TGG - chr1_1:55941185-55941204 Msa0030030:intron 30.0%
TTAAGACTGAAACCTTTATC+TGG + chr1_1:55941214-55941233 None:intergenic 30.0%
TCTTGATATGGTGTATATTC+TGG + chr1_1:55941457-55941476 None:intergenic 30.0%
GGTAAATATAACATCCCTTA+TGG - chr1_1:55941487-55941506 Msa0030030:intron 30.0%
AGGAGAATTTAATGAACCAT+TGG - chr1_1:55941927-55941946 Msa0030030:CDS 30.0%
GGAGAATTTAATGAACCATT+GGG - chr1_1:55941928-55941947 Msa0030030:CDS 30.0%
!! AATATCTGAGATAATGGAAG+AGG - chr1_1:55941997-55942016 Msa0030030:intron 30.0%
!! GGATTTATTTTCCATGATTG+AGG + chr1_1:55942161-55942180 None:intergenic 30.0%
CTTTGATATGCAGTGTTAAT+TGG + chr1_1:55942182-55942201 None:intergenic 30.0%
CAATTAACACTGCATATCAA+AGG - chr1_1:55942180-55942199 Msa0030030:CDS 30.0%
TGAACTTGTAAATTACCAAC+TGG + chr1_1:55942444-55942463 None:intergenic 30.0%
GAACACATGATTGAAGATAA+AGG - chr1_1:55942588-55942607 Msa0030030:CDS 30.0%
GATATCAAATATGTTCCAAG+AGG + chr1_1:55942621-55942640 None:intergenic 30.0%
GGAACATATTTGATATCATC+CGG - chr1_1:55942624-55942643 Msa0030030:CDS 30.0%
! TTTTTCCGAATGATTAATGC+CGG + chr1_1:55942646-55942665 None:intergenic 30.0%
!!! CTGAATTGTTTTTGGCAAAT+CGG - chr1_1:55942847-55942866 Msa0030030:CDS 30.0%
TGAGCTATGATGATTAACAT+AGG + chr1_1:55942952-55942971 None:intergenic 30.0%
TTGGTTTCAAACATGACTAA+AGG - chr1_1:55942981-55943000 Msa0030030:intron 30.0%
! ACAATATGTGGACTGAAAAT+TGG + chr1_1:55943126-55943145 None:intergenic 30.0%
!! GTGATATTTTTCAGTGTTCA+TGG + chr1_1:55943271-55943290 None:intergenic 30.0%
TTCTCATTTGAATTACTGCA+AGG - chr1_1:55943362-55943381 Msa0030030:CDS 30.0%
ACAATATGCTGATAACCAAT+TGG - chr1_1:55943401-55943420 Msa0030030:CDS 30.0%
! TTTTAGTCTCAATGACCAAT+TGG + chr1_1:55943419-55943438 None:intergenic 30.0%
!! ATTGGTCTTAAAGATGAGAA+GGG - chr1_1:55943480-55943499 Msa0030030:CDS 30.0%
GATCATTGACAACAATTGTA+GGG + chr1_1:55943953-55943972 None:intergenic 30.0%
ACTTTATTAAGTCTGTGTTG+TGG - chr1_1:55944257-55944276 Msa0030030:CDS 30.0%
ATATGACTTTATCCTTCAAG+TGG - chr1_1:55944347-55944366 Msa0030030:intron 30.0%
ACATATGTGATACAACACTT+TGG + chr1_1:55944433-55944452 None:intergenic 30.0%
!!! TACGATTTTTTGTGGACAAA+AGG + chr1_1:55944755-55944774 None:intergenic 30.0%
!!! TGGTCTTATACGATTTTTTG+TGG + chr1_1:55944763-55944782 None:intergenic 30.0%
!!! ACTTTTTTCAACAAGTCTGA+AGG + chr1_1:55944849-55944868 None:intergenic 30.0%
AATGGAATTGTATATTGGGT+AGG + chr1_1:55945272-55945291 None:intergenic 30.0%
!!! TCAAGACTTTTTTCAACAAG+GGG + chr1_1:55945327-55945346 None:intergenic 30.0%
!!! CATCAAGACTTTTTTCAACA+AGG + chr1_1:55945329-55945348 None:intergenic 30.0%
AAAGTACACACCTCTTTGTT+TGG + chr1_1:55939973-55939992 None:intergenic 35.0%
!! TGTTTCTGGAAATTCTACCA+CGG - chr1_1:55940160-55940179 Msa0030030:intron 35.0%
ATGTTTGTTTCACGTGATCA+TGG - chr1_1:55940215-55940234 Msa0030030:three_prime_UTR 35.0%
TGTTTGTTTCACGTGATCAT+GGG - chr1_1:55940216-55940235 Msa0030030:three_prime_UTR 35.0%
CTAAGGAAATTGACATGACT+AGG + chr1_1:55940362-55940381 None:intergenic 35.0%
TCATGTCAATTTCCTTAGAC+TGG - chr1_1:55940364-55940383 Msa0030030:intron 35.0%
! CTGGAATCTTTTATGTTCAG+AGG - chr1_1:55940383-55940402 Msa0030030:intron 35.0%
! GCATCGATACTTCTTATTGA+AGG - chr1_1:55940412-55940431 Msa0030030:intron 35.0%
! GTGAGATGCATCTTATTTCA+AGG + chr1_1:55940728-55940747 None:intergenic 35.0%
AATAAGATGCATCTCACACT+CGG - chr1_1:55940731-55940750 Msa0030030:intron 35.0%
ATTCTCTTCAGTGTCAAGTT+AGG - chr1_1:55940816-55940835 Msa0030030:intron 35.0%
! TTTGATGGTTTAGTGTTGAG+TGG - chr1_1:55940921-55940940 Msa0030030:intron 35.0%
! CAATCAAAATTAGCCTGTGT+AGG + chr1_1:55940969-55940988 None:intergenic 35.0%
!! CTACACAGGCTAATTTTGAT+TGG - chr1_1:55940967-55940986 Msa0030030:intron 35.0%
ATGACTTCAAAACCAGTCTT+TGG + chr1_1:55941064-55941083 None:intergenic 35.0%
GTCCAAACTATTTCAGATAG+AGG + chr1_1:55941190-55941209 None:intergenic 35.0%
ATAGTTTGGACTCCAGATAA+AGG - chr1_1:55941199-55941218 Msa0030030:intron 35.0%
ATCTTCTACAGGTTTATCTG+TGG + chr1_1:55941335-55941354 None:intergenic 35.0%
TGCACAAAAACATCTTCTAC+AGG + chr1_1:55941346-55941365 None:intergenic 35.0%
! TGGTGTATATTCTGGAAAGA+TGG + chr1_1:55941449-55941468 None:intergenic 35.0%
CCTGTATCATGTTCTTGATA+TGG + chr1_1:55941469-55941488 None:intergenic 35.0%
CCATATCAAGAACATGATAC+AGG - chr1_1:55941466-55941485 Msa0030030:intron 35.0%
TACATCTGTAGGATCCATAA+GGG + chr1_1:55941504-55941523 None:intergenic 35.0%
TTATGGATCCTACAGATGTA+GGG - chr1_1:55941504-55941523 Msa0030030:intron 35.0%
TGAGTTTGCAGTAAGAACTT+TGG - chr1_1:55941532-55941551 Msa0030030:intron 35.0%
! GAAGTATTTACTTTGTCACG+AGG - chr1_1:55941573-55941592 Msa0030030:intron 35.0%
! GATTTGAATTTTGTCCCTTC+AGG + chr1_1:55941632-55941651 None:intergenic 35.0%
ATAGTTCATTGCGACGTATT+AGG - chr1_1:55941765-55941784 Msa0030030:CDS 35.0%
TTGGAGAAAATTAACTCTGC+TGG - chr1_1:55941875-55941894 Msa0030030:CDS 35.0%
! TGATTTGGCAAATGGTCAAA+AGG - chr1_1:55941907-55941926 Msa0030030:CDS 35.0%
CACAAATATTCTTCTCCCAA+TGG + chr1_1:55941946-55941965 None:intergenic 35.0%
GTAAATTACCAACTGGACTT+TGG + chr1_1:55942437-55942456 None:intergenic 35.0%
TTGTAATGTTTCCTTGGTGA+AGG + chr1_1:55942501-55942520 None:intergenic 35.0%
CCTTCTTTGTAATGTTTCCT+TGG + chr1_1:55942507-55942526 None:intergenic 35.0%
CCAAGGAAACATTACAAAGA+AGG - chr1_1:55942504-55942523 Msa0030030:CDS 35.0%
GAAACATTACAAAGAAGGCT+TGG - chr1_1:55942509-55942528 Msa0030030:CDS 35.0%
ATGGTGGTTGAAATAGAAGA+TGG - chr1_1:55942549-55942568 Msa0030030:CDS 35.0%
! GATAAAGGTTCTAATCCTCT+TGG - chr1_1:55942603-55942622 Msa0030030:CDS 35.0%
ATCATCCGGCATTAATCATT+CGG - chr1_1:55942638-55942657 Msa0030030:CDS 35.0%
CGACTCTCATTCTTATTGTA+TGG + chr1_1:55942801-55942820 None:intergenic 35.0%
CGCAATTATCACTTCTTGTT+TGG + chr1_1:55942880-55942899 None:intergenic 35.0%
TCATAGCTCATTCATGAACT+TGG - chr1_1:55942962-55942981 Msa0030030:intron 35.0%
GGACTGAAAATTGGATTTGA+AGG + chr1_1:55943117-55943136 None:intergenic 35.0%
CTCAAAACACTGACAATATG+TGG + chr1_1:55943138-55943157 None:intergenic 35.0%
TTGATGAGACATTCTTGTTC+CGG + chr1_1:55943165-55943184 None:intergenic 35.0%
ACAAGAATGTCTCATCAAGT+AGG - chr1_1:55943167-55943186 Msa0030030:intron 35.0%
AAATTTATAGGCCTAACCTG+AGG + chr1_1:55943239-55943258 None:intergenic 35.0%
!! CTTCTCATCTTTAAGACCAA+TGG + chr1_1:55943481-55943500 None:intergenic 35.0%
!! CATTGGTCTTAAAGATGAGA+AGG - chr1_1:55943479-55943498 Msa0030030:CDS 35.0%
GAATCTCTCAATCTCGAAAA+AGG + chr1_1:55943549-55943568 None:intergenic 35.0%
! TGTTTGTTGGCATTGTTTGA+TGG + chr1_1:55943610-55943629 None:intergenic 35.0%
TGGTAGACTATTCTGTTTGT+TGG + chr1_1:55943623-55943642 None:intergenic 35.0%
CGATCATTGACAACAATTGT+AGG + chr1_1:55943954-55943973 None:intergenic 35.0%
CTCAACCAATGAATGAAGAT+CGG + chr1_1:55944040-55944059 None:intergenic 35.0%
TAAAGAACTACTCCACTTGA+AGG + chr1_1:55944362-55944381 None:intergenic 35.0%
TCTGCTAAAAAATGAAGGAC+AGG - chr1_1:55944568-55944587 Msa0030030:five_prime_UTR 35.0%
! TTGTGGACAAAAGGCTATTT+TGG + chr1_1:55944746-55944765 None:intergenic 35.0%
TTGCACTATATGTTTCCTAG+TGG - chr1_1:55944888-55944907 Msa0030030:five_prime_UTR 35.0%
GTACAAACAAGATAGAGAGA+TGG + chr1_1:55945008-55945027 None:intergenic 35.0%
AACCTGTATGCTTCTGTTTC+TGG - chr1_1:55940146-55940165 Msa0030030:intron 40.0%
! TTCCAGAAACAGAAGCATAC+AGG + chr1_1:55940151-55940170 None:intergenic 40.0%
ATAGAAAAGATACGGTACCG+TGG + chr1_1:55940180-55940199 None:intergenic 40.0%
GTTTGTTTCACGTGATCATG+GGG - chr1_1:55940217-55940236 Msa0030030:three_prime_UTR 40.0%
TTGACGCGTTAATGCTTCAT+AGG - chr1_1:55940521-55940540 Msa0030030:intron 40.0%
ATAAGATGCATCTCACACTC+GGG - chr1_1:55940732-55940751 Msa0030030:intron 40.0%
!! ATGGTATTGGCTTGGGATTT+GGG - chr1_1:55940763-55940782 Msa0030030:intron 40.0%
TCTTCAGTGTCAAGTTAGGT+GGG - chr1_1:55940820-55940839 Msa0030030:intron 40.0%
CGATGTTGAACCTAGTAGTA+TGG - chr1_1:55941279-55941298 Msa0030030:intron 40.0%
AGAGCAAGAACCATACTACT+AGG + chr1_1:55941292-55941311 None:intergenic 40.0%
TTTGCGCATATAACAGCAAG+AGG + chr1_1:55941370-55941389 None:intergenic 40.0%
CTACATCTGTAGGATCCATA+AGG + chr1_1:55941505-55941524 None:intergenic 40.0%
CTTATGGATCCTACAGATGT+AGG - chr1_1:55941503-55941522 Msa0030030:intron 40.0%
TCACATTTCCCTACATCTGT+AGG + chr1_1:55941515-55941534 None:intergenic 40.0%
!! TTTTGTCCCTTCAGGTTACA+CGG + chr1_1:55941624-55941643 None:intergenic 40.0%
GGGACAAAATTCAAATCCCT+CGG - chr1_1:55941635-55941654 Msa0030030:intron 40.0%
GGACAAAATTCAAATCCCTC+GGG - chr1_1:55941636-55941655 Msa0030030:intron 40.0%
GACAAAATTCAAATCCCTCG+GGG - chr1_1:55941637-55941656 Msa0030030:intron 40.0%
AATCATGATGTTGATCTGCC+AGG - chr1_1:55941839-55941858 Msa0030030:CDS 40.0%
TCCAAATTATCACCAGATCC+TGG + chr1_1:55941860-55941879 None:intergenic 40.0%
GAGAAAATTAACTCTGCTGG+AGG - chr1_1:55941878-55941897 Msa0030030:CDS 40.0%
!! GGAACATCTGATTTGGCAAA+TGG - chr1_1:55941899-55941918 Msa0030030:CDS 40.0%
AGCTGCTTCAATTTCAATGC+AGG + chr1_1:55941975-55941994 None:intergenic 40.0%
! CTGCATATCAAAGGCATGTA+TGG - chr1_1:55942189-55942208 Msa0030030:CDS 40.0%
ATGACACTGACATGTAGACA+CGG + chr1_1:55942285-55942304 None:intergenic 40.0%
AGAATGCATTGTCGCATAAC+CGG + chr1_1:55942310-55942329 None:intergenic 40.0%
TCTGCATCATGACTTTCTTC+AGG - chr1_1:55942402-55942421 Msa0030030:CDS 40.0%
AGATGGGTCTAAACTTAGCA+TGG - chr1_1:55942467-55942486 Msa0030030:CDS 40.0%
TGGAACAAAATCCTTCACCA+AGG - chr1_1:55942487-55942506 Msa0030030:CDS 40.0%
!! GGATACTAGTGTTGACAACA+TGG - chr1_1:55942530-55942549 Msa0030030:CDS 40.0%
!! TACTAGTGTTGACAACATGG+TGG - chr1_1:55942533-55942552 Msa0030030:CDS 40.0%
TAGCATCATCTCATTGACCT+TGG + chr1_1:55942778-55942797 None:intergenic 40.0%
CTCACAATCTAGTCAAGATG+AGG - chr1_1:55943007-55943026 Msa0030030:intron 40.0%
TCAAGATGAGGAGAAGTCTT+TGG - chr1_1:55943019-55943038 Msa0030030:intron 40.0%
!!! TGTCAGTGTTTTGAGAATGC+CGG - chr1_1:55943143-55943162 Msa0030030:intron 40.0%
GTGTTCTTCTTTACATCCTC+AGG - chr1_1:55943220-55943239 Msa0030030:intron 40.0%
CTTCTTTACATCCTCAGGTT+AGG - chr1_1:55943225-55943244 Msa0030030:intron 40.0%
! AAAGAGGCTTGTTCTTCCAT+TGG - chr1_1:55943462-55943481 Msa0030030:CDS 40.0%
AGATGAGAAGGGAAACAATG+AGG - chr1_1:55943491-55943510 Msa0030030:intron 40.0%
TTCGAGATTGAGAGATTCAG+AGG - chr1_1:55943551-55943570 Msa0030030:intron 40.0%
ATTGAGAGATTCAGAGGCAA+TGG - chr1_1:55943557-55943576 Msa0030030:intron 40.0%
TGGTTTCCATGTTTGCAAAG+AGG - chr1_1:55943577-55943596 Msa0030030:intron 40.0%
TCCATGTTTGCAAAGAGGTT+AGG - chr1_1:55943582-55943601 Msa0030030:intron 40.0%
ACCTAACCTCTTTGCAAACA+TGG + chr1_1:55943586-55943605 None:intergenic 40.0%
AACAGAATAGTCTACCACAC+AGG - chr1_1:55943626-55943645 Msa0030030:intron 40.0%
TTGTCAATGATCGTGATCGT+TGG - chr1_1:55943961-55943980 Msa0030030:CDS 40.0%
TTCGTCCGATCTTCATTCAT+TGG - chr1_1:55944032-55944051 Msa0030030:CDS 40.0%
GTTGTGCTGTGATTTAGTGA+GGG + chr1_1:55944692-55944711 None:intergenic 40.0%
AGTTGTGCTGTGATTTAGTG+AGG + chr1_1:55944693-55944712 None:intergenic 40.0%
AATCGAATAAAGGGACCACT+AGG + chr1_1:55944906-55944925 None:intergenic 40.0%
!!! GTTTTGGAACTTCCCTAACT+TGG - chr1_1:55944981-55945000 Msa0030030:five_prime_UTR 40.0%
TAGAGAGATGGACCAAGTTA+GGG + chr1_1:55944996-55945015 None:intergenic 40.0%
ATAGAGAGATGGACCAAGTT+AGG + chr1_1:55944997-55945016 None:intergenic 40.0%
! CTCTATCTTGTTTGTACTGC+AGG - chr1_1:55945011-55945030 Msa0030030:five_prime_UTR 40.0%
CAGCAACGTTAAATGAGTTG+AGG + chr1_1:55945060-55945079 None:intergenic 40.0%
ATTACGACACCGACACACAT+CGG + chr1_1:55940448-55940467 None:intergenic 45.0%
AATCCCAAGCCAATACCATC+AGG + chr1_1:55940762-55940781 None:intergenic 45.0%
!! GATGGTATTGGCTTGGGATT+TGG - chr1_1:55940762-55940781 Msa0030030:intron 45.0%
CTCTTCAGTGTCAAGTTAGG+TGG - chr1_1:55940819-55940838 Msa0030030:intron 45.0%
TCCACATTCATACCCTACAC+AGG - chr1_1:55940953-55940972 Msa0030030:intron 45.0%
CTTGAGTACTCAGCAGTAGA+AGG + chr1_1:55941013-55941032 None:intergenic 45.0%
TTGCAAACTGAGTCAAGTGC+AGG - chr1_1:55941118-55941137 Msa0030030:intron 45.0%
CTTCAACAGATACTCCTGCT+AGG - chr1_1:55941401-55941420 Msa0030030:intron 45.0%
! TCGCTTGTTGAATTCCTAGC+AGG + chr1_1:55941418-55941437 None:intergenic 45.0%
TCAGCTCAATGGTAAGAGCT+TGG - chr1_1:55941598-55941617 Msa0030030:intron 45.0%
AAATTCAAATCCCTCGGGGA+TGG - chr1_1:55941641-55941660 Msa0030030:intron 45.0%
!! CATTTTTCAACCATCCCCGA+GGG + chr1_1:55941654-55941673 None:intergenic 45.0%
!! TCATTTTTCAACCATCCCCG+AGG + chr1_1:55941655-55941674 None:intergenic 45.0%
GCCAGGATCTGGTGATAATT+TGG - chr1_1:55941856-55941875 Msa0030030:CDS 45.0%
TGCTGGAGGAACATCTGATT+TGG - chr1_1:55941892-55941911 Msa0030030:CDS 45.0%
GTAACCACATGTGTCAGTGT+CGG + chr1_1:55942231-55942250 None:intergenic 45.0%
CTACATGTCAGTGTCATGTC+CGG - chr1_1:55942288-55942307 Msa0030030:CDS 45.0%
CAGATCAACCAAAGTCCAGT+TGG - chr1_1:55942426-55942445 Msa0030030:CDS 45.0%
! CACCTTCAATGGCCTTACAA+GGG - chr1_1:55943068-55943087 Msa0030030:intron 45.0%
GTCTACCACACAGGTAAACA+TGG - chr1_1:55943635-55943654 Msa0030030:intron 45.0%
TCAAGCCATGTTTACCTGTG+TGG + chr1_1:55943643-55943662 None:intergenic 45.0%
GCTTCAGGGACAAAACAAAC+TGG - chr1_1:55944632-55944651 Msa0030030:five_prime_UTR 45.0%
TCAGGGACAAAACAAACTGG+AGG - chr1_1:55944635-55944654 Msa0030030:five_prime_UTR 45.0%
TGTACTGCAGGAAGACATCA+TGG - chr1_1:55945023-55945042 Msa0030030:five_prime_UTR 45.0%
!! TTGGCCTGATGGTATTGGCT+TGG - chr1_1:55940755-55940774 Msa0030030:intron 50.0%
!! TGGCCTGATGGTATTGGCTT+GGG - chr1_1:55940756-55940775 Msa0030030:intron 50.0%
TCGAACCTGAGACCTTGAGT+AGG + chr1_1:55940797-55940816 None:intergenic 50.0%
GCCTGTGTAGGGTATGAATG+TGG + chr1_1:55940957-55940976 None:intergenic 50.0%
TTCAACATCGCGCAAAAGCG+AGG + chr1_1:55941269-55941288 None:intergenic 50.0%
GATGTTGATCTGCCAGGATC+TGG - chr1_1:55941845-55941864 Msa0030030:CDS 50.0%
GTATCCGACACTGACACATG+TGG - chr1_1:55942224-55942243 Msa0030030:CDS 50.0%
ATCCTGATCGCCACCTTCAA+TGG - chr1_1:55943057-55943076 Msa0030030:intron 50.0%
CCTTGTAAGGCCATTGAAGG+TGG + chr1_1:55943070-55943089 None:intergenic 50.0%
! CCACCTTCAATGGCCTTACA+AGG - chr1_1:55943067-55943086 Msa0030030:intron 50.0%
GACCCTTGTAAGGCCATTGA+AGG + chr1_1:55943073-55943092 None:intergenic 50.0%
! TCTGGAGCTTGACCCTTGTA+AGG + chr1_1:55943083-55943102 None:intergenic 50.0%
CAAGCAATAGCCTCTGCAGA+CGG - chr1_1:55943198-55943217 Msa0030030:intron 50.0%
AAGAAGAACACCGTCTGCAG+AGG + chr1_1:55943211-55943230 None:intergenic 50.0%
GACACCGACACACATCGGAT+CGG + chr1_1:55940443-55940462 None:intergenic 55.0%
GATGCATCTCACACTCGGGT+TGG - chr1_1:55940736-55940755 Msa0030030:intron 55.0%
!! TCGGGTTGGCCTGATGGTAT+TGG - chr1_1:55940750-55940769 Msa0030030:intron 55.0%
! TGGGAGTGTGCTCCTACTCA+AGG - chr1_1:55940782-55940801 Msa0030030:intron 55.0%
GTGCTCCTACTCAAGGTCTC+AGG - chr1_1:55940789-55940808 Msa0030030:intron 55.0%
! GTCACGAGGTGTCAGCTCAA+TGG - chr1_1:55941587-55941606 Msa0030030:intron 55.0%
AGCTTGGCCGTGTAACCTGA+AGG - chr1_1:55941614-55941633 Msa0030030:intron 55.0%
GCTTGGCCGTGTAACCTGAA+GGG - chr1_1:55941615-55941634 Msa0030030:intron 55.0%
GCGTCCGATCCGATGTGTGT+CGG - chr1_1:55940436-55940455 Msa0030030:intron 60.0%
!! TCACACTCGGGTTGGCCTGA+TGG - chr1_1:55940744-55940763 Msa0030030:intron 60.0%
GGCCATTGAAGGTGGCGATC+AGG + chr1_1:55943062-55943081 None:intergenic 60.0%
TGGTTGAGATCTGCGAGCGC+AGG - chr1_1:55944052-55944071 Msa0030030:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 55939969 55945392 55939969 ID=Msa0030030;Name=Msa0030030
chr1_1 mRNA 55939969 55945392 55939969 ID=Msa0030030-mRNA-1;Parent=Msa0030030;Name=Msa0030030-mRNA-1;_AED=0.20;_eAED=0.20;_QI=916|1|1|1|0.5|0.28|7|344|561
chr1_1 exon 55939969 55940159 55939969 ID=Msa0030030-mRNA-1:exon:16717;Parent=Msa0030030-mRNA-1
chr1_1 exon 55940188 55940328 55940188 ID=Msa0030030-mRNA-1:exon:16716;Parent=Msa0030030-mRNA-1
chr1_1 exon 55941714 55941977 55941714 ID=Msa0030030-mRNA-1:exon:16715;Parent=Msa0030030-mRNA-1
chr1_1 exon 55942120 55942937 55942120 ID=Msa0030030-mRNA-1:exon:16714;Parent=Msa0030030-mRNA-1
chr1_1 exon 55943318 55943500 55943318 ID=Msa0030030-mRNA-1:exon:16713;Parent=Msa0030030-mRNA-1
chr1_1 exon 55943874 55944353 55943874 ID=Msa0030030-mRNA-1:exon:16712;Parent=Msa0030030-mRNA-1
chr1_1 exon 55944524 55945392 55944524 ID=Msa0030030-mRNA-1:exon:16711;Parent=Msa0030030-mRNA-1
chr1_1 five_prime_UTR 55944524 55945392 55944524 ID=Msa0030030-mRNA-1:five_prime_utr;Parent=Msa0030030-mRNA-1
chr1_1 five_prime_UTR 55944307 55944353 55944307 ID=Msa0030030-mRNA-1:five_prime_utr;Parent=Msa0030030-mRNA-1
chr1_1 CDS 55943874 55944306 55943874 ID=Msa0030030-mRNA-1:cds;Parent=Msa0030030-mRNA-1
chr1_1 CDS 55943318 55943500 55943318 ID=Msa0030030-mRNA-1:cds;Parent=Msa0030030-mRNA-1
chr1_1 CDS 55942120 55942937 55942120 ID=Msa0030030-mRNA-1:cds;Parent=Msa0030030-mRNA-1
chr1_1 CDS 55941726 55941977 55941726 ID=Msa0030030-mRNA-1:cds;Parent=Msa0030030-mRNA-1
chr1_1 three_prime_UTR 55941714 55941725 55941714 ID=Msa0030030-mRNA-1:three_prime_utr;Parent=Msa0030030-mRNA-1
chr1_1 three_prime_UTR 55940188 55940328 55940188 ID=Msa0030030-mRNA-1:three_prime_utr;Parent=Msa0030030-mRNA-1
chr1_1 three_prime_UTR 55939969 55940159 55939969 ID=Msa0030030-mRNA-1:three_prime_utr;Parent=Msa0030030-mRNA-1
Gene Sequence

>Msa0030030

ATGAAACCAAAGACTGGTTTTGAAGTCATTCTGAATTATTCTAGTCAATGTCATAAGGAAAAATTGCAAACTGAGTCAAGTGCAGGTGCAAATGCAGCTTCTAGAGCAAACACAATCTTTTCTGCCAATGATCCTCTATCTGAAATAGTTTGGACTCCAGATAAAGGTTTCAGTCTTAAATGTGTTGATTCAAGTTTTACTAACAAAAATACCTCGCTTTTGCGCGATGTTGAACCTAGTAGTATGGTTCTTGCTCTGCTACAAAGTGTTACTTGTACCACAGATAAACCTGTAGAAGATGTTTTTGTGCAACCTCTTGCTGTTATATGCGCAAAGAGTGATGTTTCTTCAACAGATACTCCTGCTAGGAATTCAACAAGCGATTCAGTTGCCATCTTTCCAGAATATACACCATATCAAGAACATGATACAGGATCTGGTGATAATTTGGAGAAAATTAACTCTGCTGGAGGAACATCTGATTTGGCAAATGGTCAAAAGGAGAATTTAATGAACCATTGGGAGAAGAATATTTGTGCTCAAGCCTGCATTGAAATTGAAGCAGCTAAAATATCTGAGATAATGGAAGAGGAAAACAAATCTTCTACTATTTCAGGTCAGATCAACCAAAGTCCAGTTGGTAATTTACAAGTTCATCAAGATGGGTCTAAACTTAGCATGGAACAAAATCCTTCACCAAGGAAACATTACAAAGAAGGCTTGGATACTAGTGTTGACAACATGGTGGTTGAAATAGAAGATGGCTCATATGCTAGAGTTGAACACATGATTGAAGATAAAGGTTCTAATCCTCTTGGAACATATTTGATATCATCCGGCATTAATCATTCGGAAAAAATGGATTTAACTTCACAGAAAGATTTACAAACTTTCAGCTGTAAAGCAGCTACTTCTGCAGCAACAAGCAGAGTTCTTGTTTCAAAATCCAATGATAATAAAAACAAATCCAAGGTCAATGAGATGATGCTACCATACAATAAGAATGAGAGTCGTCTAAGTTTTGAGAACTATCATAATACTGAATTGTTTTTGGCAAATCGGAAGCGATCCAAACAAGAAGTGATAATTGCGAGTAAAAGAGTCAAAATGCAAATTCAAGAAACTTCATCATATTCTAAATCCTATGTTAATCATCATAGCTCATTCATGAACTTGGTTTCAAACATGACTAAAGGATACTCACAATCTAGTCAAGATGAGGAGAAGTCTTTGGCTCTTGCTTACGAAAATCCTGATCGCCACCTTCAATGGCCTTACAAGGGTCAAGCTCCAGAGATTAAAAATTCCTTCAAATCCAATTTTCAGTCCACATATTGTCAGTGTTTTGAGAATGCCGGAACAAGAATGTCTCATCAAGTAGGAGAGTCTTCAAGCAATAGCCTCTGCAGACGGTGTTCTTCTTTACATCCTCAGGTTGAAGAGACTAAAGAACAATATGCTGATAACCAATTGGTCATTGAGACTAAAAAGTTACAGAATTGTTTTATCAACAAAGAGGCTTGTTCTTCCATTGGTCTTAAAGATGAGAAGGGAAACAATGAGGACATATCTAAGCATAAGTTTAACAATGTTACGCCTTTTTCGAGATTGAGAGATTCAGAGGCAATGGTTTCCATGTTTGCAAAGAGGTTAGGTGCCATCAAACAATGCCAACAAACAGAATAG

Protein sequence

>Msa0030030

MKPKTGFEVILNYSSQCHKEKLQTESSAGANAASRANTIFSANDPLSEIVWTPDKGFSLKCVDSSFTNKNTSLLRDVEPSSMVLALLQSVTCTTDKPVEDVFVQPLAVICAKSDVSSTDTPARNSTSDSVAIFPEYTPYQEHDTGSGDNLEKINSAGGTSDLANGQKENLMNHWEKNICAQACIEIEAAKISEIMEEENKSSTISGQINQSPVGNLQVHQDGSKLSMEQNPSPRKHYKEGLDTSVDNMVVEIEDGSYARVEHMIEDKGSNPLGTYLISSGINHSEKMDLTSQKDLQTFSCKAATSAATSRVLVSKSNDNKNKSKVNEMMLPYNKNESRLSFENYHNTELFLANRKRSKQEVIIASKRVKMQIQETSSYSKSYVNHHSSFMNLVSNMTKGYSQSSQDEEKSLALAYENPDRHLQWPYKGQAPEIKNSFKSNFQSTYCQCFENAGTRMSHQVGESSSNSLCRRCSSLHPQVEETKEQYADNQLVIETKKLQNCFINKEACSSIGLKDEKGNNEDISKHKFNNVTPFSRLRDSEAMVSMFAKRLGAIKQCQQTE*