Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911680 | XP_039689507.1 | 82.997 | 347 | 37 | 2 | 1 | 342 | 54 | 383 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078590 | Msa0911680 | 0.817748 | 2.807376e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911680 | MtrunA17_Chr4g0019921 | 82.997 | 347 | 37 | 2 | 1 | 342 | 1 | 330 | 0.0 | 591 |
| Msa0911680 | MtrunA17_Chr2g0332321 | 79.870 | 308 | 51 | 3 | 1 | 303 | 170 | 471 | 1.07e-176 | 515 |
| Msa0911680 | MtrunA17_Chr3g0087121 | 73.279 | 247 | 58 | 2 | 1 | 242 | 25 | 268 | 1.86e-134 | 383 |
| Msa0911680 | MtrunA17_Chr6g0471851 | 72.821 | 195 | 45 | 2 | 1 | 190 | 25 | 216 | 3.20e-103 | 302 |
| Msa0911680 | MtrunA17_Chr8g0355501 | 82.941 | 170 | 29 | 0 | 1 | 170 | 77 | 246 | 1.06e-102 | 314 |
| Msa0911680 | MtrunA17_Chr8g0355501 | 80.952 | 63 | 12 | 0 | 242 | 304 | 247 | 309 | 8.36e-25 | 105 |
| Msa0911680 | MtrunA17_Chr8g0355431 | 81.818 | 165 | 30 | 0 | 1 | 165 | 77 | 241 | 5.01e-100 | 296 |
| Msa0911680 | MtrunA17_Chr6g0467971 | 70.370 | 189 | 48 | 2 | 1 | 184 | 69 | 254 | 9.68e-97 | 287 |
| Msa0911680 | MtrunA17_Chr3g0087111 | 75.294 | 170 | 39 | 1 | 1 | 170 | 160 | 326 | 2.22e-93 | 281 |
| Msa0911680 | MtrunA17_Chr8g0358561 | 79.191 | 173 | 30 | 2 | 150 | 316 | 1 | 173 | 3.32e-88 | 265 |
| Msa0911680 | MtrunA17_Chr4g0019891 | 78.125 | 160 | 17 | 2 | 183 | 342 | 51 | 192 | 9.75e-77 | 243 |
| Msa0911680 | MtrunA17_Chr6g0469401 | 85.714 | 112 | 16 | 0 | 27 | 138 | 1 | 112 | 9.44e-66 | 204 |
| Msa0911680 | MtrunA17_Chr4g0074241 | 78.448 | 116 | 25 | 0 | 1 | 116 | 128 | 243 | 1.81e-63 | 202 |
| Msa0911680 | MtrunA17_Chr8g0358571 | 77.778 | 90 | 20 | 0 | 1 | 90 | 109 | 198 | 5.18e-48 | 160 |
| Msa0911680 | MtrunA17_Chr6g0467981 | 62.626 | 99 | 32 | 1 | 207 | 305 | 1 | 94 | 1.42e-36 | 127 |
| Msa0911680 | MtrunA17_Chr6g0471841 | 46.429 | 112 | 30 | 3 | 241 | 322 | 7 | 118 | 3.11e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 96 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTATTCTCCTCGGTTTC+AGG | 0.131386 | 6_2:+18839115 | None:intergenic |
| TTGTATTTCCCTGTCATAAA+TGG | 0.198190 | 6_2:+18840517 | None:intergenic |
| GAGGGAAATGTTGGAACTTC+TGG | 0.223270 | 6_2:-18839199 | Msa0911680:CDS |
| TTGGTTGTGTTTGTTTCTTT+TGG | 0.237371 | 6_2:+18839160 | None:intergenic |
| AAGAGTTCAAGTAATGAAAA+AGG | 0.243861 | 6_2:-18839097 | Msa0911680:CDS |
| AACTGGTGCTCCCATGTTCT+TGG | 0.270270 | 6_2:-18840697 | Msa0911680:CDS |
| GCACCCTTCACCCACACTTT+TGG | 0.277158 | 6_2:+18840823 | None:intergenic |
| GAGAGATTGAGGAAAGAATT+AGG | 0.296207 | 6_2:-18840916 | Msa0911680:CDS |
| CCACAATTTCTTTGTGGATT+GGG | 0.311206 | 6_2:-18841088 | Msa0911680:CDS |
| ATCATTGTAGGTCTTGTATA+CGG | 0.343818 | 6_2:-18839264 | Msa0911680:CDS |
| ATTAATTACATGAAGAAAAT+GGG | 0.353915 | 6_2:-18840550 | Msa0911680:intron |
| CACTTCAATCAGATTGTCCT+TGG | 0.356731 | 6_2:+18839141 | None:intergenic |
| CATGGACCTTCTGAAGGTCT+TGG | 0.357266 | 6_2:+18840455 | None:intergenic |
| AGAAGTTCTAGTGTAGATAA+TGG | 0.357626 | 6_2:-18839001 | Msa0911680:CDS |
| GCTAATGGATTTGCAACTTC+CGG | 0.386059 | 6_2:+18840649 | None:intergenic |
| TCCACAATTTCTTTGTGGAT+TGG | 0.391790 | 6_2:-18841089 | Msa0911680:CDS |
| CACTACAACCGCGGAAACCT+TGG | 0.392087 | 6_2:-18839236 | Msa0911680:CDS |
| AGATACCTGTCCACTCTCTA+AGG | 0.401736 | 6_2:-18840344 | Msa0911680:intron |
| AGCGGTCATCACTTCGTGAT+TGG | 0.407724 | 6_2:-18840495 | Msa0911680:CDS |
| CTGGGGTATCATCTTATAAC+TGG | 0.409514 | 6_2:-18840714 | Msa0911680:CDS |
| TGTATTTCCCTGTCATAAAT+GGG | 0.421302 | 6_2:+18840518 | None:intergenic |
| CTCAGCTATTCTTCTTTCCA+AGG | 0.421507 | 6_2:+18839219 | None:intergenic |
| CTTCTAATATGTGAGCATAT+TGG | 0.428949 | 6_2:+18840743 | None:intergenic |
| CTTCTATTATCTTCAGTCTC+AGG | 0.438068 | 6_2:+18839064 | None:intergenic |
| GCGGTCATCACTTCGTGATT+GGG | 0.442115 | 6_2:-18840494 | Msa0911680:CDS |
| AGATGCATCTTAATCATTGT+AGG | 0.448462 | 6_2:-18839276 | Msa0911680:CDS |
| TTAATCTGCTTCCCCGCCAT+TGG | 0.449695 | 6_2:+18840967 | None:intergenic |
| AGGAAGTGGATGTCCGCTAA+TGG | 0.450533 | 6_2:+18840634 | None:intergenic |
| AAAAGTCCACAATTTCTTTG+TGG | 0.452855 | 6_2:-18841094 | Msa0911680:CDS |
| AGCGGACATCCACTTCCTAA+TGG | 0.456836 | 6_2:-18840629 | Msa0911680:intron |
| AGGGAAATGTTGGAACTTCT+GGG | 0.461640 | 6_2:-18839198 | Msa0911680:CDS |
| AGAATAGCTGAGGGAAATGT+TGG | 0.469982 | 6_2:-18839208 | Msa0911680:CDS |
| AAATCTGTCACCTTCACAAA+AGG | 0.473464 | 6_2:+18840874 | None:intergenic |
| GTGTATGAGCTTCCAATGGC+GGG | 0.473643 | 6_2:-18840979 | Msa0911680:CDS |
| GAATGTTGCATATCTGCAAC+TGG | 0.475324 | 6_2:-18841119 | Msa0911680:CDS |
| TTCGTCGGTGTTGTACAGTC+TGG | 0.475558 | 6_2:+18840393 | None:intergenic |
| TGTACATCATCCTCTTTCAA+TGG | 0.490209 | 6_2:+18841006 | None:intergenic |
| TTGCAACTTCCGGAGTGTGC+AGG | 0.495358 | 6_2:+18840659 | None:intergenic |
| AGATACAAAGCTACTATTAG+TGG | 0.497139 | 6_2:+18840768 | None:intergenic |
| CTTTCATATATCCAAGAACA+TGG | 0.497935 | 6_2:+18840686 | None:intergenic |
| GACCTTGTGGGACTCGAGCA+TGG | 0.499314 | 6_2:-18840433 | Msa0911680:CDS |
| CAGAAGGTCCATGACCTTGT+GGG | 0.500084 | 6_2:-18840445 | Msa0911680:CDS |
| GATACAAAGCTACTATTAGT+GGG | 0.506158 | 6_2:+18840769 | None:intergenic |
| ATTGAGGAAAGAATTAGGAC+TGG | 0.513989 | 6_2:-18840911 | Msa0911680:CDS |
| AGGAAAGAATTAGGACTGGA+TGG | 0.519085 | 6_2:-18840907 | Msa0911680:CDS |
| GTTCTTGGATATATGAAAGA+AGG | 0.521826 | 6_2:-18840682 | Msa0911680:CDS |
| AAGAGAAGCCCATTTATGAC+AGG | 0.523203 | 6_2:-18840526 | Msa0911680:CDS |
| ACTTGAACTCTTATTCTCCT+CGG | 0.523827 | 6_2:+18839108 | None:intergenic |
| ATGTAGCAATAGAGAGATTG+AGG | 0.525072 | 6_2:-18840927 | Msa0911680:CDS |
| CCCAATCCACAAAGAAATTG+TGG | 0.525885 | 6_2:+18841088 | None:intergenic |
| TTATAAGATGATACCCCAGC+TGG | 0.526208 | 6_2:+18840718 | None:intergenic |
| AGTTGATCACCATTAGGAAG+TGG | 0.530213 | 6_2:+18840620 | None:intergenic |
| CACATATTAGAAGATCCAGC+TGG | 0.541125 | 6_2:-18840733 | Msa0911680:CDS |
| GCTCGAGTCCCACAAGGTCA+TGG | 0.542708 | 6_2:+18840437 | None:intergenic |
| GAAAGAGGATGATGTACATA+GGG | 0.544704 | 6_2:-18841001 | Msa0911680:CDS |
| TGAAAGAGGATGATGTACAT+AGG | 0.546471 | 6_2:-18841002 | Msa0911680:CDS |
| TGAAGTGCAACCTGAAACCG+AGG | 0.557192 | 6_2:-18839125 | Msa0911680:CDS |
| GATAATAGAAGTTTGAGTGC+CGG | 0.560056 | 6_2:-18839052 | Msa0911680:CDS |
| TCAGAAGGTCCATGACCTTG+TGG | 0.566219 | 6_2:-18840446 | Msa0911680:CDS |
| CGAGGTACTTCCATTGAAAG+AGG | 0.566709 | 6_2:-18841016 | Msa0911680:CDS |
| TCGTGATTGGGATGTCAAGA+AGG | 0.569381 | 6_2:-18840482 | Msa0911680:CDS |
| CAAGGTCATGGACCTTCTGA+AGG | 0.569613 | 6_2:+18840449 | None:intergenic |
| AAACCAAAAGTGTGGGTGAA+GGG | 0.572555 | 6_2:-18840826 | Msa0911680:CDS |
| GAAACCAAAAGTGTGGGTGA+AGG | 0.572740 | 6_2:-18840827 | Msa0911680:CDS |
| CAATACAAGCGGACCTTCGT+CGG | 0.575233 | 6_2:+18840378 | None:intergenic |
| CGAGCATGGACTGACGGCCG+CGG | 0.585014 | 6_2:-18840419 | Msa0911680:CDS |
| TCTTCTTTCCAAGGTTTCCG+CGG | 0.585458 | 6_2:+18839228 | None:intergenic |
| ACATATTAGAAGATCCAGCT+GGG | 0.590011 | 6_2:-18840732 | Msa0911680:CDS |
| CACTAGAGAAACCAAAAGTG+TGG | 0.590626 | 6_2:-18840834 | Msa0911680:CDS |
| CTCTTTCAATGGAAGTACCT+CGG | 0.592638 | 6_2:+18841017 | None:intergenic |
| ACTTTGAGAAAGAGCACATG+TGG | 0.594422 | 6_2:-18841056 | Msa0911680:CDS |
| GAAAGAAGGCCTGCACACTC+CGG | 0.594444 | 6_2:-18840668 | Msa0911680:CDS |
| TCTCACCTTAGAGAGTGGAC+AGG | 0.598675 | 6_2:+18840339 | None:intergenic |
| GGAAGTTGCAAATCCATTAG+CGG | 0.612887 | 6_2:-18840647 | Msa0911680:CDS |
| TTTCATATATCCAAGAACAT+GGG | 0.618566 | 6_2:+18840687 | None:intergenic |
| CTTGGAAAGAAGAATAGCTG+AGG | 0.620235 | 6_2:-18839218 | Msa0911680:CDS |
| GCATCAAAACACAATACAAG+CGG | 0.625263 | 6_2:+18840367 | None:intergenic |
| GGTGTATGAGCTTCCAATGG+CGG | 0.625971 | 6_2:-18840980 | Msa0911680:CDS |
| TTAATTACATGAAGAAAATG+GGG | 0.626557 | 6_2:-18840549 | Msa0911680:intron |
| GGGACTCGAGCATGGACTGA+CGG | 0.628365 | 6_2:-18840425 | Msa0911680:CDS |
| TTCTAGTGTAGATAATGGAT+AGG | 0.630561 | 6_2:-18838996 | None:intergenic |
| GTCCATGCTCGAGTCCCACA+AGG | 0.638686 | 6_2:+18840431 | None:intergenic |
| TTGGAAAGAAGAATAGCTGA+GGG | 0.649019 | 6_2:-18839217 | Msa0911680:CDS |
| GGCAAACCAAGACCTTCAGA+AGG | 0.649702 | 6_2:-18840461 | Msa0911680:CDS |
| TGTATGAGCTTCCAATGGCG+GGG | 0.654369 | 6_2:-18840978 | Msa0911680:CDS |
| TAGGGTGTATGAGCTTCCAA+TGG | 0.657008 | 6_2:-18840983 | Msa0911680:CDS |
| AAAAGAAACAAACACAACCA+AGG | 0.660541 | 6_2:-18839158 | Msa0911680:CDS |
| ACTAGAGAAACCAAAAGTGT+GGG | 0.662149 | 6_2:-18840833 | Msa0911680:CDS |
| AGAGAAGCCCATTTATGACA+GGG | 0.681472 | 6_2:-18840525 | Msa0911680:CDS |
| AGACTGTACAACACCGACGA+AGG | 0.681760 | 6_2:-18840391 | Msa0911680:CDS |
| ACGGATCTACACTACAACCG+CGG | 0.689418 | 6_2:-18839245 | Msa0911680:CDS |
| ATACAAAGCTACTATTAGTG+GGG | 0.694074 | 6_2:+18840770 | None:intergenic |
| GTTGTACAGTCTGGTTACCG+CGG | 0.697186 | 6_2:+18840402 | None:intergenic |
| TTATGACAGGGAAATACAAG+CGG | 0.702905 | 6_2:-18840513 | Msa0911680:CDS |
| CATATTAGAAGATCCAGCTG+GGG | 0.704362 | 6_2:-18840731 | Msa0911680:CDS |
| GATTGTATTAAGCAAGACCG+AGG | 0.726667 | 6_2:-18841034 | Msa0911680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAATATAGATTAAA+TGG | - | chr6_2:18839842-18839861 | Msa0911680:intron | 10.0% |
| !! | ATATATATATATGTACTATT+AGG | + | chr6_2:18840801-18840820 | None:intergenic | 10.0% |
| !! | TATATATATAAAAAAATTGC+AGG | - | chr6_2:18840812-18840831 | Msa0911680:CDS | 10.0% |
| !! | AATCATTAATATAGATTAAA+TGG | - | chr6_2:18839842-18839861 | Msa0911680:intron | 10.0% |
| !! | ATATATATATATGTACTATT+AGG | + | chr6_2:18840801-18840820 | None:intergenic | 10.0% |
| !! | TATATATATAAAAAAATTGC+AGG | - | chr6_2:18840812-18840831 | Msa0911680:CDS | 10.0% |
| !! | TATTAATTACATGAAGAAAA+TGG | - | chr6_2:18839563-18839582 | Msa0911680:intron | 15.0% |
| !! | ATTAATTACATGAAGAAAAT+GGG | - | chr6_2:18839564-18839583 | Msa0911680:intron | 15.0% |
| !! | TATATAATCCTATCAAAATT+TGG | + | chr6_2:18840212-18840231 | None:intergenic | 15.0% |
| !!! | AAATTTTGATAGGATTATAT+AGG | - | chr6_2:18840211-18840230 | Msa0911680:intron | 15.0% |
| !! | TATTAATTACATGAAGAAAA+TGG | - | chr6_2:18839563-18839582 | Msa0911680:intron | 15.0% |
| !! | ATTAATTACATGAAGAAAAT+GGG | - | chr6_2:18839564-18839583 | Msa0911680:intron | 15.0% |
| !! | TATATAATCCTATCAAAATT+TGG | + | chr6_2:18840212-18840231 | None:intergenic | 15.0% |
| !!! | AAATTTTGATAGGATTATAT+AGG | - | chr6_2:18840211-18840230 | Msa0911680:intron | 15.0% |
| !! | TTAATATGCACAATAAAAAC+AGG | + | chr6_2:18839549-18839568 | None:intergenic | 20.0% |
| !! | TTAATTACATGAAGAAAATG+GGG | - | chr6_2:18839565-18839584 | Msa0911680:intron | 20.0% |
| !! | CTACTATTTATGCAATATTA+TGG | - | chr6_2:18839815-18839834 | Msa0911680:intron | 20.0% |
| !! | TTAAGGAAATAATTTCAGAT+TGG | - | chr6_2:18840051-18840070 | Msa0911680:intron | 20.0% |
| !!! | CTTAATTTAACTTATACTAG+CGG | + | chr6_2:18840151-18840170 | None:intergenic | 20.0% |
| !! | AATCATTAGTATTGTTAAAC+CGG | - | chr6_2:18840326-18840345 | Msa0911680:intron | 20.0% |
| !!! | TGTTACATATTGTGTTTTTA+TGG | - | chr6_2:18840765-18840784 | Msa0911680:CDS | 20.0% |
| !!! | AACTTCTTTCTTTTCTTTTT+CGG | + | chr6_2:18841100-18841119 | None:intergenic | 20.0% |
| !! | TTAATATGCACAATAAAAAC+AGG | + | chr6_2:18839549-18839568 | None:intergenic | 20.0% |
| !! | TTAATTACATGAAGAAAATG+GGG | - | chr6_2:18839565-18839584 | Msa0911680:intron | 20.0% |
| !! | CTACTATTTATGCAATATTA+TGG | - | chr6_2:18839815-18839834 | Msa0911680:intron | 20.0% |
| !! | TTAAGGAAATAATTTCAGAT+TGG | - | chr6_2:18840051-18840070 | Msa0911680:intron | 20.0% |
| !!! | CTTAATTTAACTTATACTAG+CGG | + | chr6_2:18840151-18840170 | None:intergenic | 20.0% |
| !! | AATCATTAGTATTGTTAAAC+CGG | - | chr6_2:18840326-18840345 | Msa0911680:intron | 20.0% |
| !!! | TGTTACATATTGTGTTTTTA+TGG | - | chr6_2:18840765-18840784 | Msa0911680:CDS | 20.0% |
| !!! | AACTTCTTTCTTTTCTTTTT+CGG | + | chr6_2:18841100-18841119 | None:intergenic | 20.0% |
| !! | AAATTATTCTCCTTTTGTGA+AGG | - | chr6_2:18839230-18839249 | Msa0911680:CDS | 25.0% |
| ! | TTTCATATATCCAAGAACAT+GGG | + | chr6_2:18839430-18839449 | None:intergenic | 25.0% |
| ! | CTATTTATGCAATATTATGG+CGG | - | chr6_2:18839818-18839837 | Msa0911680:intron | 25.0% |
| ! | TAGATTAAATGGTTTCAAGA+TGG | - | chr6_2:18839853-18839872 | Msa0911680:intron | 25.0% |
| ! | TTGAGAGATATAAACTACTT+TGG | + | chr6_2:18839899-18839918 | None:intergenic | 25.0% |
| ! | TAACTAACAAGTAACAAACA+AGG | + | chr6_2:18840077-18840096 | None:intergenic | 25.0% |
| ! | AACCAATTAACAATACTACT+GGG | + | chr6_2:18840300-18840319 | None:intergenic | 25.0% |
| ! | AAACCAATTAACAATACTAC+TGG | + | chr6_2:18840301-18840320 | None:intergenic | 25.0% |
| ! | TTGGAAATCAATAAGATATC+CGG | + | chr6_2:18840348-18840367 | None:intergenic | 25.0% |
| ! | AAGAGTTCAAGTAATGAAAA+AGG | - | chr6_2:18841017-18841036 | Msa0911680:CDS | 25.0% |
| ! | AGAGTTCAAGTAATGAAAAA+GGG | - | chr6_2:18841018-18841037 | Msa0911680:CDS | 25.0% |
| !! | ACTTCTTTCTTTTCTTTTTC+GGG | + | chr6_2:18841099-18841118 | None:intergenic | 25.0% |
| !! | AAATTATTCTCCTTTTGTGA+AGG | - | chr6_2:18839230-18839249 | Msa0911680:CDS | 25.0% |
| ! | TTTCATATATCCAAGAACAT+GGG | + | chr6_2:18839430-18839449 | None:intergenic | 25.0% |
| ! | CTATTTATGCAATATTATGG+CGG | - | chr6_2:18839818-18839837 | Msa0911680:intron | 25.0% |
| ! | TAGATTAAATGGTTTCAAGA+TGG | - | chr6_2:18839853-18839872 | Msa0911680:intron | 25.0% |
| ! | TTGAGAGATATAAACTACTT+TGG | + | chr6_2:18839899-18839918 | None:intergenic | 25.0% |
| ! | TAACTAACAAGTAACAAACA+AGG | + | chr6_2:18840077-18840096 | None:intergenic | 25.0% |
| ! | AACCAATTAACAATACTACT+GGG | + | chr6_2:18840300-18840319 | None:intergenic | 25.0% |
| ! | AAACCAATTAACAATACTAC+TGG | + | chr6_2:18840301-18840320 | None:intergenic | 25.0% |
| ! | TTGGAAATCAATAAGATATC+CGG | + | chr6_2:18840348-18840367 | None:intergenic | 25.0% |
| ! | AAGAGTTCAAGTAATGAAAA+AGG | - | chr6_2:18841017-18841036 | Msa0911680:CDS | 25.0% |
| ! | AGAGTTCAAGTAATGAAAAA+GGG | - | chr6_2:18841018-18841037 | Msa0911680:CDS | 25.0% |
| !! | ACTTCTTTCTTTTCTTTTTC+GGG | + | chr6_2:18841099-18841118 | None:intergenic | 25.0% |
| AAAAGTCCACAATTTCTTTG+TGG | - | chr6_2:18839020-18839039 | Msa0911680:CDS | 30.0% | |
| ATACAAAGCTACTATTAGTG+GGG | + | chr6_2:18839347-18839366 | None:intergenic | 30.0% | |
| GATACAAAGCTACTATTAGT+GGG | + | chr6_2:18839348-18839367 | None:intergenic | 30.0% | |
| AGATACAAAGCTACTATTAG+TGG | + | chr6_2:18839349-18839368 | None:intergenic | 30.0% | |
| CTTCTAATATGTGAGCATAT+TGG | + | chr6_2:18839374-18839393 | None:intergenic | 30.0% | |
| CTTTCATATATCCAAGAACA+TGG | + | chr6_2:18839431-18839450 | None:intergenic | 30.0% | |
| GTTCTTGGATATATGAAAGA+AGG | - | chr6_2:18839432-18839451 | Msa0911680:intron | 30.0% | |
| TGTATTTCCCTGTCATAAAT+GGG | + | chr6_2:18839599-18839618 | None:intergenic | 30.0% | |
| TTGTATTTCCCTGTCATAAA+TGG | + | chr6_2:18839600-18839619 | None:intergenic | 30.0% | |
| !! | TTTCCTTAAGTTGAAGACAA+GGG | + | chr6_2:18840040-18840059 | None:intergenic | 30.0% |
| !! | ATTTCCTTAAGTTGAAGACA+AGG | + | chr6_2:18840041-18840060 | None:intergenic | 30.0% |
| ! | TGTGAATTTAAGGCTCTTTA+TGG | + | chr6_2:18840178-18840197 | None:intergenic | 30.0% |
| TCATGTCTTGTGTGAATTTA+AGG | + | chr6_2:18840188-18840207 | None:intergenic | 30.0% | |
| !! | GACATGAACCAAATTTTGAT+AGG | - | chr6_2:18840201-18840220 | Msa0911680:intron | 30.0% |
| ATCCCAGTAGTATTGTTAAT+TGG | - | chr6_2:18840295-18840314 | Msa0911680:intron | 30.0% | |
| ! | GGTGTTACACAATATTATGT+TGG | + | chr6_2:18840367-18840386 | None:intergenic | 30.0% |
| ATAATATTGTGTAACACCCA+CGG | - | chr6_2:18840369-18840388 | Msa0911680:CDS | 30.0% | |
| ATAAAGGAACCGAATCATAA+CGG | - | chr6_2:18840457-18840476 | Msa0911680:CDS | 30.0% | |
| GAAGGCTTATAAGAATTGTT+AGG | - | chr6_2:18840529-18840548 | Msa0911680:CDS | 30.0% | |
| AAGATGCATCTTGTTGATAT+AGG | + | chr6_2:18840560-18840579 | None:intergenic | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | - | chr6_2:18840565-18840584 | Msa0911680:intron | 30.0% |
| AGATGCATCTTAATCATTGT+AGG | - | chr6_2:18840838-18840857 | Msa0911680:CDS | 30.0% | |
| ! | ATCATTGTAGGTCTTGTATA+CGG | - | chr6_2:18840850-18840869 | Msa0911680:CDS | 30.0% |
| !! | TTGGTTGTGTTTGTTTCTTT+TGG | + | chr6_2:18840957-18840976 | None:intergenic | 30.0% |
| AAAAGAAACAAACACAACCA+AGG | - | chr6_2:18840956-18840975 | Msa0911680:CDS | 30.0% | |
| TTCAAGTAATGAAAAAGGGA+TGG | - | chr6_2:18841022-18841041 | Msa0911680:CDS | 30.0% | |
| ! | AGAAGTTCTAGTGTAGATAA+TGG | - | chr6_2:18841113-18841132 | Msa0911680:CDS | 30.0% |
| AAAAGTCCACAATTTCTTTG+TGG | - | chr6_2:18839020-18839039 | Msa0911680:CDS | 30.0% | |
| ATACAAAGCTACTATTAGTG+GGG | + | chr6_2:18839347-18839366 | None:intergenic | 30.0% | |
| GATACAAAGCTACTATTAGT+GGG | + | chr6_2:18839348-18839367 | None:intergenic | 30.0% | |
| AGATACAAAGCTACTATTAG+TGG | + | chr6_2:18839349-18839368 | None:intergenic | 30.0% | |
| CTTCTAATATGTGAGCATAT+TGG | + | chr6_2:18839374-18839393 | None:intergenic | 30.0% | |
| CTTTCATATATCCAAGAACA+TGG | + | chr6_2:18839431-18839450 | None:intergenic | 30.0% | |
| GTTCTTGGATATATGAAAGA+AGG | - | chr6_2:18839432-18839451 | Msa0911680:intron | 30.0% | |
| TGTATTTCCCTGTCATAAAT+GGG | + | chr6_2:18839599-18839618 | None:intergenic | 30.0% | |
| TTGTATTTCCCTGTCATAAA+TGG | + | chr6_2:18839600-18839619 | None:intergenic | 30.0% | |
| !! | TTTCCTTAAGTTGAAGACAA+GGG | + | chr6_2:18840040-18840059 | None:intergenic | 30.0% |
| !! | ATTTCCTTAAGTTGAAGACA+AGG | + | chr6_2:18840041-18840060 | None:intergenic | 30.0% |
| ! | TGTGAATTTAAGGCTCTTTA+TGG | + | chr6_2:18840178-18840197 | None:intergenic | 30.0% |
| TCATGTCTTGTGTGAATTTA+AGG | + | chr6_2:18840188-18840207 | None:intergenic | 30.0% | |
| !! | GACATGAACCAAATTTTGAT+AGG | - | chr6_2:18840201-18840220 | Msa0911680:intron | 30.0% |
| ATCCCAGTAGTATTGTTAAT+TGG | - | chr6_2:18840295-18840314 | Msa0911680:intron | 30.0% | |
| ! | GGTGTTACACAATATTATGT+TGG | + | chr6_2:18840367-18840386 | None:intergenic | 30.0% |
| ATAATATTGTGTAACACCCA+CGG | - | chr6_2:18840369-18840388 | Msa0911680:CDS | 30.0% | |
| ATAAAGGAACCGAATCATAA+CGG | - | chr6_2:18840457-18840476 | Msa0911680:CDS | 30.0% | |
| GAAGGCTTATAAGAATTGTT+AGG | - | chr6_2:18840529-18840548 | Msa0911680:CDS | 30.0% | |
| AAGATGCATCTTGTTGATAT+AGG | + | chr6_2:18840560-18840579 | None:intergenic | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | - | chr6_2:18840565-18840584 | Msa0911680:intron | 30.0% |
| AGATGCATCTTAATCATTGT+AGG | - | chr6_2:18840838-18840857 | Msa0911680:CDS | 30.0% | |
| ! | ATCATTGTAGGTCTTGTATA+CGG | - | chr6_2:18840850-18840869 | Msa0911680:CDS | 30.0% |
| !! | TTGGTTGTGTTTGTTTCTTT+TGG | + | chr6_2:18840957-18840976 | None:intergenic | 30.0% |
| AAAAGAAACAAACACAACCA+AGG | - | chr6_2:18840956-18840975 | Msa0911680:CDS | 30.0% | |
| TTCAAGTAATGAAAAAGGGA+TGG | - | chr6_2:18841022-18841041 | Msa0911680:CDS | 30.0% | |
| ! | AGAAGTTCTAGTGTAGATAA+TGG | - | chr6_2:18841113-18841132 | Msa0911680:CDS | 30.0% |
| TCCACAATTTCTTTGTGGAT+TGG | - | chr6_2:18839025-18839044 | Msa0911680:CDS | 35.0% | |
| CCACAATTTCTTTGTGGATT+GGG | - | chr6_2:18839026-18839045 | Msa0911680:CDS | 35.0% | |
| TGTACATCATCCTCTTTCAA+TGG | + | chr6_2:18839111-18839130 | None:intergenic | 35.0% | |
| TGAAAGAGGATGATGTACAT+AGG | - | chr6_2:18839112-18839131 | Msa0911680:CDS | 35.0% | |
| GAAAGAGGATGATGTACATA+GGG | - | chr6_2:18839113-18839132 | Msa0911680:CDS | 35.0% | |
| ATGTAGCAATAGAGAGATTG+AGG | - | chr6_2:18839187-18839206 | Msa0911680:CDS | 35.0% | |
| GAGAGATTGAGGAAAGAATT+AGG | - | chr6_2:18839198-18839217 | Msa0911680:CDS | 35.0% | |
| ATTGAGGAAAGAATTAGGAC+TGG | - | chr6_2:18839203-18839222 | Msa0911680:CDS | 35.0% | |
| AAATCTGTCACCTTCACAAA+AGG | + | chr6_2:18839243-18839262 | None:intergenic | 35.0% | |
| ! | TTTTGTGAAGGTGACAGATT+TGG | - | chr6_2:18839242-18839261 | Msa0911680:CDS | 35.0% |
| ! | ACTAGAGAAACCAAAAGTGT+GGG | - | chr6_2:18839281-18839300 | Msa0911680:CDS | 35.0% |
| ACATATTAGAAGATCCAGCT+GGG | - | chr6_2:18839382-18839401 | Msa0911680:intron | 35.0% | |
| CCATTTAGTTGATCACCATT+AGG | + | chr6_2:18839503-18839522 | None:intergenic | 35.0% | |
| CCTAATGGTGATCAACTAAA+TGG | - | chr6_2:18839500-18839519 | Msa0911680:intron | 35.0% | |
| AATGGTGATCAACTAAATGG+TGG | - | chr6_2:18839503-18839522 | Msa0911680:intron | 35.0% | |
| TTATGACAGGGAAATACAAG+CGG | - | chr6_2:18839601-18839620 | Msa0911680:intron | 35.0% | |
| GCATCAAAACACAATACAAG+CGG | + | chr6_2:18839750-18839769 | None:intergenic | 35.0% | |
| TTATATCTCTCAACTGCACT+TGG | - | chr6_2:18839906-18839925 | Msa0911680:intron | 35.0% | |
| AATCCAACACATGCATGTAA+TGG | + | chr6_2:18839956-18839975 | None:intergenic | 35.0% | |
| GATTGAAACTATATGTGTGC+TGG | + | chr6_2:18839998-18840017 | None:intergenic | 35.0% | |
| GGGAATATGAAAACTATACG+TGG | + | chr6_2:18840020-18840039 | None:intergenic | 35.0% | |
| ATTCCCTTGTCTTCAACTTA+AGG | - | chr6_2:18840034-18840053 | Msa0911680:intron | 35.0% | |
| GTTGATGCTCATTCTATAGT+AGG | + | chr6_2:18840121-18840140 | None:intergenic | 35.0% | |
| TACTGGGATAATTACAACTG+AGG | + | chr6_2:18840284-18840303 | None:intergenic | 35.0% | |
| TTGGAAAGAAGAATAGCTGA+GGG | - | chr6_2:18840897-18840916 | Msa0911680:CDS | 35.0% | |
| ACTTGAACTCTTATTCTCCT+CGG | + | chr6_2:18841009-18841028 | None:intergenic | 35.0% | |
| CTTCTATTATCTTCAGTCTC+AGG | + | chr6_2:18841053-18841072 | None:intergenic | 35.0% | |
| GATAATAGAAGTTTGAGTGC+CGG | - | chr6_2:18841062-18841081 | Msa0911680:CDS | 35.0% | |
| !!! | TTTTCGGGTTAGATATGTTC+CGG | + | chr6_2:18841084-18841103 | None:intergenic | 35.0% |
| TCCACAATTTCTTTGTGGAT+TGG | - | chr6_2:18839025-18839044 | Msa0911680:CDS | 35.0% | |
| CCACAATTTCTTTGTGGATT+GGG | - | chr6_2:18839026-18839045 | Msa0911680:CDS | 35.0% | |
| TGTACATCATCCTCTTTCAA+TGG | + | chr6_2:18839111-18839130 | None:intergenic | 35.0% | |
| TGAAAGAGGATGATGTACAT+AGG | - | chr6_2:18839112-18839131 | Msa0911680:CDS | 35.0% | |
| GAAAGAGGATGATGTACATA+GGG | - | chr6_2:18839113-18839132 | Msa0911680:CDS | 35.0% | |
| ATGTAGCAATAGAGAGATTG+AGG | - | chr6_2:18839187-18839206 | Msa0911680:CDS | 35.0% | |
| GAGAGATTGAGGAAAGAATT+AGG | - | chr6_2:18839198-18839217 | Msa0911680:CDS | 35.0% | |
| ATTGAGGAAAGAATTAGGAC+TGG | - | chr6_2:18839203-18839222 | Msa0911680:CDS | 35.0% | |
| AAATCTGTCACCTTCACAAA+AGG | + | chr6_2:18839243-18839262 | None:intergenic | 35.0% | |
| ! | TTTTGTGAAGGTGACAGATT+TGG | - | chr6_2:18839242-18839261 | Msa0911680:CDS | 35.0% |
| ! | ACTAGAGAAACCAAAAGTGT+GGG | - | chr6_2:18839281-18839300 | Msa0911680:CDS | 35.0% |
| ACATATTAGAAGATCCAGCT+GGG | - | chr6_2:18839382-18839401 | Msa0911680:intron | 35.0% | |
| CCATTTAGTTGATCACCATT+AGG | + | chr6_2:18839503-18839522 | None:intergenic | 35.0% | |
| CCTAATGGTGATCAACTAAA+TGG | - | chr6_2:18839500-18839519 | Msa0911680:intron | 35.0% | |
| AATGGTGATCAACTAAATGG+TGG | - | chr6_2:18839503-18839522 | Msa0911680:intron | 35.0% | |
| TTATGACAGGGAAATACAAG+CGG | - | chr6_2:18839601-18839620 | Msa0911680:intron | 35.0% | |
| GCATCAAAACACAATACAAG+CGG | + | chr6_2:18839750-18839769 | None:intergenic | 35.0% | |
| TTATATCTCTCAACTGCACT+TGG | - | chr6_2:18839906-18839925 | Msa0911680:intron | 35.0% | |
| AATCCAACACATGCATGTAA+TGG | + | chr6_2:18839956-18839975 | None:intergenic | 35.0% | |
| GATTGAAACTATATGTGTGC+TGG | + | chr6_2:18839998-18840017 | None:intergenic | 35.0% | |
| GGGAATATGAAAACTATACG+TGG | + | chr6_2:18840020-18840039 | None:intergenic | 35.0% | |
| ATTCCCTTGTCTTCAACTTA+AGG | - | chr6_2:18840034-18840053 | Msa0911680:intron | 35.0% | |
| GTTGATGCTCATTCTATAGT+AGG | + | chr6_2:18840121-18840140 | None:intergenic | 35.0% | |
| TACTGGGATAATTACAACTG+AGG | + | chr6_2:18840284-18840303 | None:intergenic | 35.0% | |
| TTGGAAAGAAGAATAGCTGA+GGG | - | chr6_2:18840897-18840916 | Msa0911680:CDS | 35.0% | |
| ACTTGAACTCTTATTCTCCT+CGG | + | chr6_2:18841009-18841028 | None:intergenic | 35.0% | |
| CTTCTATTATCTTCAGTCTC+AGG | + | chr6_2:18841053-18841072 | None:intergenic | 35.0% | |
| GATAATAGAAGTTTGAGTGC+CGG | - | chr6_2:18841062-18841081 | Msa0911680:CDS | 35.0% | |
| !!! | TTTTCGGGTTAGATATGTTC+CGG | + | chr6_2:18841084-18841103 | None:intergenic | 35.0% |
| CCCAATCCACAAAGAAATTG+TGG | + | chr6_2:18839029-18839048 | None:intergenic | 40.0% | |
| ! | ACTTTGAGAAAGAGCACATG+TGG | - | chr6_2:18839058-18839077 | Msa0911680:CDS | 40.0% |
| GATTGTATTAAGCAAGACCG+AGG | - | chr6_2:18839080-18839099 | Msa0911680:CDS | 40.0% | |
| !! | CTCTTTCAATGGAAGTACCT+CGG | + | chr6_2:18839100-18839119 | None:intergenic | 40.0% |
| AGGAAAGAATTAGGACTGGA+TGG | - | chr6_2:18839207-18839226 | Msa0911680:CDS | 40.0% | |
| CACTAGAGAAACCAAAAGTG+TGG | - | chr6_2:18839280-18839299 | Msa0911680:CDS | 40.0% | |
| ! | AAACCAAAAGTGTGGGTGAA+GGG | - | chr6_2:18839288-18839307 | Msa0911680:intron | 40.0% |
| CACATATTAGAAGATCCAGC+TGG | - | chr6_2:18839381-18839400 | Msa0911680:intron | 40.0% | |
| CATATTAGAAGATCCAGCTG+GGG | - | chr6_2:18839383-18839402 | Msa0911680:intron | 40.0% | |
| TTATAAGATGATACCCCAGC+TGG | + | chr6_2:18839399-18839418 | None:intergenic | 40.0% | |
| ! | CTGGGGTATCATCTTATAAC+TGG | - | chr6_2:18839400-18839419 | Msa0911680:intron | 40.0% |
| !! | GCTAATGGATTTGCAACTTC+CGG | + | chr6_2:18839468-18839487 | None:intergenic | 40.0% |
| GGAAGTTGCAAATCCATTAG+CGG | - | chr6_2:18839467-18839486 | Msa0911680:intron | 40.0% | |
| AGTTGATCACCATTAGGAAG+TGG | + | chr6_2:18839497-18839516 | None:intergenic | 40.0% | |
| AAGAGAAGCCCATTTATGAC+AGG | - | chr6_2:18839588-18839607 | Msa0911680:intron | 40.0% | |
| AGAGAAGCCCATTTATGACA+GGG | - | chr6_2:18839589-18839608 | Msa0911680:intron | 40.0% | |
| ! | TTTTCTCTCACCTTAGAGAG+TGG | + | chr6_2:18839783-18839802 | None:intergenic | 40.0% |
| TTGCCATTACATGCATGTGT+TGG | - | chr6_2:18839950-18839969 | Msa0911680:intron | 40.0% | |
| GCTCATTCTATAGTAGGTGA+TGG | + | chr6_2:18840115-18840134 | None:intergenic | 40.0% | |
| TCGGTTCCTTTATAAGCTGT+CGG | + | chr6_2:18840450-18840469 | None:intergenic | 40.0% | |
| CCTCTCATTCCGTTATGATT+CGG | + | chr6_2:18840469-18840488 | None:intergenic | 40.0% | |
| ! | CGAATCATAACGGAATGAGA+GGG | - | chr6_2:18840467-18840486 | Msa0911680:CDS | 40.0% |
| CATGTAGTCTCATACCTACA+CGG | + | chr6_2:18840502-18840521 | None:intergenic | 40.0% | |
| GTATGAGACTACATGGTTGA+AGG | - | chr6_2:18840507-18840526 | Msa0911680:CDS | 40.0% | |
| GCTTAACTGTGGAGTTCTTA+TGG | + | chr6_2:18840600-18840619 | None:intergenic | 40.0% | |
| !!! | TGCTTGACTTGGAGCAATTT+TGG | - | chr6_2:18840621-18840640 | Msa0911680:intron | 40.0% |
| !!! | GCTTGACTTGGAGCAATTTT+GGG | - | chr6_2:18840622-18840641 | Msa0911680:intron | 40.0% |
| !!! | ACTTGGAGCAATTTTGGGAT+GGG | - | chr6_2:18840627-18840646 | Msa0911680:intron | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+AGG | - | chr6_2:18840714-18840733 | Msa0911680:CDS | 40.0% |
| !! | AAGACTCGTGTTGGTTTGTA+GGG | - | chr6_2:18840715-18840734 | Msa0911680:CDS | 40.0% |
| ATGTAACATCGCAGACTTTC+AGG | + | chr6_2:18840753-18840772 | None:intergenic | 40.0% | |
| CTCAGCTATTCTTCTTTCCA+AGG | + | chr6_2:18840898-18840917 | None:intergenic | 40.0% | |
| CTTGGAAAGAAGAATAGCTG+AGG | - | chr6_2:18840896-18840915 | Msa0911680:CDS | 40.0% | |
| AGAATAGCTGAGGGAAATGT+TGG | - | chr6_2:18840906-18840925 | Msa0911680:CDS | 40.0% | |
| AGGGAAATGTTGGAACTTCT+GGG | - | chr6_2:18840916-18840935 | Msa0911680:CDS | 40.0% | |
| CACTTCAATCAGATTGTCCT+TGG | + | chr6_2:18840976-18840995 | None:intergenic | 40.0% | |
| CCCAATCCACAAAGAAATTG+TGG | + | chr6_2:18839029-18839048 | None:intergenic | 40.0% | |
| ! | ACTTTGAGAAAGAGCACATG+TGG | - | chr6_2:18839058-18839077 | Msa0911680:CDS | 40.0% |
| GATTGTATTAAGCAAGACCG+AGG | - | chr6_2:18839080-18839099 | Msa0911680:CDS | 40.0% | |
| !! | CTCTTTCAATGGAAGTACCT+CGG | + | chr6_2:18839100-18839119 | None:intergenic | 40.0% |
| AGGAAAGAATTAGGACTGGA+TGG | - | chr6_2:18839207-18839226 | Msa0911680:CDS | 40.0% | |
| CACTAGAGAAACCAAAAGTG+TGG | - | chr6_2:18839280-18839299 | Msa0911680:CDS | 40.0% | |
| ! | AAACCAAAAGTGTGGGTGAA+GGG | - | chr6_2:18839288-18839307 | Msa0911680:intron | 40.0% |
| CACATATTAGAAGATCCAGC+TGG | - | chr6_2:18839381-18839400 | Msa0911680:intron | 40.0% | |
| CATATTAGAAGATCCAGCTG+GGG | - | chr6_2:18839383-18839402 | Msa0911680:intron | 40.0% | |
| TTATAAGATGATACCCCAGC+TGG | + | chr6_2:18839399-18839418 | None:intergenic | 40.0% | |
| ! | CTGGGGTATCATCTTATAAC+TGG | - | chr6_2:18839400-18839419 | Msa0911680:intron | 40.0% |
| !! | GCTAATGGATTTGCAACTTC+CGG | + | chr6_2:18839468-18839487 | None:intergenic | 40.0% |
| GGAAGTTGCAAATCCATTAG+CGG | - | chr6_2:18839467-18839486 | Msa0911680:intron | 40.0% | |
| AGTTGATCACCATTAGGAAG+TGG | + | chr6_2:18839497-18839516 | None:intergenic | 40.0% | |
| AAGAGAAGCCCATTTATGAC+AGG | - | chr6_2:18839588-18839607 | Msa0911680:intron | 40.0% | |
| AGAGAAGCCCATTTATGACA+GGG | - | chr6_2:18839589-18839608 | Msa0911680:intron | 40.0% | |
| ! | TTTTCTCTCACCTTAGAGAG+TGG | + | chr6_2:18839783-18839802 | None:intergenic | 40.0% |
| TTGCCATTACATGCATGTGT+TGG | - | chr6_2:18839950-18839969 | Msa0911680:intron | 40.0% | |
| GCTCATTCTATAGTAGGTGA+TGG | + | chr6_2:18840115-18840134 | None:intergenic | 40.0% | |
| TCGGTTCCTTTATAAGCTGT+CGG | + | chr6_2:18840450-18840469 | None:intergenic | 40.0% | |
| CCTCTCATTCCGTTATGATT+CGG | + | chr6_2:18840469-18840488 | None:intergenic | 40.0% | |
| ! | CGAATCATAACGGAATGAGA+GGG | - | chr6_2:18840467-18840486 | Msa0911680:CDS | 40.0% |
| CATGTAGTCTCATACCTACA+CGG | + | chr6_2:18840502-18840521 | None:intergenic | 40.0% | |
| GTATGAGACTACATGGTTGA+AGG | - | chr6_2:18840507-18840526 | Msa0911680:CDS | 40.0% | |
| GCTTAACTGTGGAGTTCTTA+TGG | + | chr6_2:18840600-18840619 | None:intergenic | 40.0% | |
| !!! | TGCTTGACTTGGAGCAATTT+TGG | - | chr6_2:18840621-18840640 | Msa0911680:intron | 40.0% |
| !!! | GCTTGACTTGGAGCAATTTT+GGG | - | chr6_2:18840622-18840641 | Msa0911680:intron | 40.0% |
| !!! | ACTTGGAGCAATTTTGGGAT+GGG | - | chr6_2:18840627-18840646 | Msa0911680:intron | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+AGG | - | chr6_2:18840714-18840733 | Msa0911680:CDS | 40.0% |
| !! | AAGACTCGTGTTGGTTTGTA+GGG | - | chr6_2:18840715-18840734 | Msa0911680:CDS | 40.0% |
| ATGTAACATCGCAGACTTTC+AGG | + | chr6_2:18840753-18840772 | None:intergenic | 40.0% | |
| CTCAGCTATTCTTCTTTCCA+AGG | + | chr6_2:18840898-18840917 | None:intergenic | 40.0% | |
| CTTGGAAAGAAGAATAGCTG+AGG | - | chr6_2:18840896-18840915 | Msa0911680:CDS | 40.0% | |
| AGAATAGCTGAGGGAAATGT+TGG | - | chr6_2:18840906-18840925 | Msa0911680:CDS | 40.0% | |
| AGGGAAATGTTGGAACTTCT+GGG | - | chr6_2:18840916-18840935 | Msa0911680:CDS | 40.0% | |
| CACTTCAATCAGATTGTCCT+TGG | + | chr6_2:18840976-18840995 | None:intergenic | 40.0% | |
| ! | CGAGGTACTTCCATTGAAAG+AGG | - | chr6_2:18839098-18839117 | Msa0911680:CDS | 45.0% |
| TAGGGTGTATGAGCTTCCAA+TGG | - | chr6_2:18839131-18839150 | Msa0911680:CDS | 45.0% | |
| ! | GAAACCAAAAGTGTGGGTGA+AGG | - | chr6_2:18839287-18839306 | Msa0911680:intron | 45.0% |
| TCGTGATTGGGATGTCAAGA+AGG | - | chr6_2:18839632-18839651 | Msa0911680:intron | 45.0% | |
| AGATACCTGTCCACTCTCTA+AGG | - | chr6_2:18839770-18839789 | Msa0911680:intron | 45.0% | |
| CGGTTCCTTTATAAGCTGTC+GGG | + | chr6_2:18840449-18840468 | None:intergenic | 45.0% | |
| ! | CCGAATCATAACGGAATGAG+AGG | - | chr6_2:18840466-18840485 | Msa0911680:CDS | 45.0% |
| CGTGTAGGTATGAGACTACA+TGG | - | chr6_2:18840500-18840519 | Msa0911680:CDS | 45.0% | |
| GAGACTACATGGTTGAAGGA+AGG | - | chr6_2:18840511-18840530 | Msa0911680:CDS | 45.0% | |
| AAGTCAAGCACGCTTAACTG+TGG | + | chr6_2:18840611-18840630 | None:intergenic | 45.0% | |
| ACAGTTAAGCGTGCTTGACT+TGG | - | chr6_2:18840610-18840629 | Msa0911680:intron | 45.0% | |
| !! | GACTTGGAGCAATTTTGGGA+TGG | - | chr6_2:18840626-18840645 | Msa0911680:intron | 45.0% |
| !! | TGTTGGTTTGTAGGGTCAGT+CGG | - | chr6_2:18840723-18840742 | Msa0911680:CDS | 45.0% |
| TCTTCTTTCCAAGGTTTCCG+CGG | + | chr6_2:18840889-18840908 | None:intergenic | 45.0% | |
| GAGGGAAATGTTGGAACTTC+TGG | - | chr6_2:18840915-18840934 | Msa0911680:CDS | 45.0% | |
| CTCTTATTCTCCTCGGTTTC+AGG | + | chr6_2:18841002-18841021 | None:intergenic | 45.0% | |
| ! | CGAGGTACTTCCATTGAAAG+AGG | - | chr6_2:18839098-18839117 | Msa0911680:CDS | 45.0% |
| TAGGGTGTATGAGCTTCCAA+TGG | - | chr6_2:18839131-18839150 | Msa0911680:CDS | 45.0% | |
| ! | GAAACCAAAAGTGTGGGTGA+AGG | - | chr6_2:18839287-18839306 | Msa0911680:intron | 45.0% |
| TCGTGATTGGGATGTCAAGA+AGG | - | chr6_2:18839632-18839651 | Msa0911680:intron | 45.0% | |
| AGATACCTGTCCACTCTCTA+AGG | - | chr6_2:18839770-18839789 | Msa0911680:intron | 45.0% | |
| CGGTTCCTTTATAAGCTGTC+GGG | + | chr6_2:18840449-18840468 | None:intergenic | 45.0% | |
| ! | CCGAATCATAACGGAATGAG+AGG | - | chr6_2:18840466-18840485 | Msa0911680:CDS | 45.0% |
| CGTGTAGGTATGAGACTACA+TGG | - | chr6_2:18840500-18840519 | Msa0911680:CDS | 45.0% | |
| GAGACTACATGGTTGAAGGA+AGG | - | chr6_2:18840511-18840530 | Msa0911680:CDS | 45.0% | |
| AAGTCAAGCACGCTTAACTG+TGG | + | chr6_2:18840611-18840630 | None:intergenic | 45.0% | |
| ACAGTTAAGCGTGCTTGACT+TGG | - | chr6_2:18840610-18840629 | Msa0911680:intron | 45.0% | |
| !! | GACTTGGAGCAATTTTGGGA+TGG | - | chr6_2:18840626-18840645 | Msa0911680:intron | 45.0% |
| !! | TGTTGGTTTGTAGGGTCAGT+CGG | - | chr6_2:18840723-18840742 | Msa0911680:CDS | 45.0% |
| TCTTCTTTCCAAGGTTTCCG+CGG | + | chr6_2:18840889-18840908 | None:intergenic | 45.0% | |
| GAGGGAAATGTTGGAACTTC+TGG | - | chr6_2:18840915-18840934 | Msa0911680:CDS | 45.0% | |
| CTCTTATTCTCCTCGGTTTC+AGG | + | chr6_2:18841002-18841021 | None:intergenic | 45.0% | |
| GGTGTATGAGCTTCCAATGG+CGG | - | chr6_2:18839134-18839153 | Msa0911680:CDS | 50.0% | |
| GTGTATGAGCTTCCAATGGC+GGG | - | chr6_2:18839135-18839154 | Msa0911680:CDS | 50.0% | |
| TGTATGAGCTTCCAATGGCG+GGG | - | chr6_2:18839136-18839155 | Msa0911680:CDS | 50.0% | |
| TTAATCTGCTTCCCCGCCAT+TGG | + | chr6_2:18839150-18839169 | None:intergenic | 50.0% | |
| AACTGGTGCTCCCATGTTCT+TGG | - | chr6_2:18839417-18839436 | Msa0911680:intron | 50.0% | |
| AGGAAGTGGATGTCCGCTAA+TGG | + | chr6_2:18839483-18839502 | None:intergenic | 50.0% | |
| AGCGGACATCCACTTCCTAA+TGG | - | chr6_2:18839485-18839504 | Msa0911680:intron | 50.0% | |
| AGCGGTCATCACTTCGTGAT+TGG | - | chr6_2:18839619-18839638 | Msa0911680:intron | 50.0% | |
| GCGGTCATCACTTCGTGATT+GGG | - | chr6_2:18839620-18839639 | Msa0911680:intron | 50.0% | |
| GGCAAACCAAGACCTTCAGA+AGG | - | chr6_2:18839653-18839672 | Msa0911680:intron | 50.0% | |
| ! | CATGGACCTTCTGAAGGTCT+TGG | + | chr6_2:18839662-18839681 | None:intergenic | 50.0% |
| CAAGGTCATGGACCTTCTGA+AGG | + | chr6_2:18839668-18839687 | None:intergenic | 50.0% | |
| TCAGAAGGTCCATGACCTTG+TGG | - | chr6_2:18839668-18839687 | Msa0911680:intron | 50.0% | |
| CAGAAGGTCCATGACCTTGT+GGG | - | chr6_2:18839669-18839688 | Msa0911680:intron | 50.0% | |
| GTTGTACAGTCTGGTTACCG+CGG | + | chr6_2:18839715-18839734 | None:intergenic | 50.0% | |
| !! | TTCGTCGGTGTTGTACAGTC+TGG | + | chr6_2:18839724-18839743 | None:intergenic | 50.0% |
| AGACTGTACAACACCGACGA+AGG | - | chr6_2:18839723-18839742 | Msa0911680:intron | 50.0% | |
| CAATACAAGCGGACCTTCGT+CGG | + | chr6_2:18839739-18839758 | None:intergenic | 50.0% | |
| TCTCACCTTAGAGAGTGGAC+AGG | + | chr6_2:18839778-18839797 | None:intergenic | 50.0% | |
| !!! | TTTTGGGATGGGTGACCTAC+CGG | - | chr6_2:18840638-18840657 | Msa0911680:CDS | 50.0% |
| CACGCTGAAAAGACTCGTGT+TGG | - | chr6_2:18840706-18840725 | Msa0911680:CDS | 50.0% | |
| ACGGATCTACACTACAACCG+CGG | - | chr6_2:18840869-18840888 | Msa0911680:CDS | 50.0% | |
| TGAAGTGCAACCTGAAACCG+AGG | - | chr6_2:18840989-18841008 | Msa0911680:CDS | 50.0% | |
| GGTGTATGAGCTTCCAATGG+CGG | - | chr6_2:18839134-18839153 | Msa0911680:CDS | 50.0% | |
| GTGTATGAGCTTCCAATGGC+GGG | - | chr6_2:18839135-18839154 | Msa0911680:CDS | 50.0% | |
| TGTATGAGCTTCCAATGGCG+GGG | - | chr6_2:18839136-18839155 | Msa0911680:CDS | 50.0% | |
| TTAATCTGCTTCCCCGCCAT+TGG | + | chr6_2:18839150-18839169 | None:intergenic | 50.0% | |
| AACTGGTGCTCCCATGTTCT+TGG | - | chr6_2:18839417-18839436 | Msa0911680:intron | 50.0% | |
| AGGAAGTGGATGTCCGCTAA+TGG | + | chr6_2:18839483-18839502 | None:intergenic | 50.0% | |
| AGCGGACATCCACTTCCTAA+TGG | - | chr6_2:18839485-18839504 | Msa0911680:intron | 50.0% | |
| AGCGGTCATCACTTCGTGAT+TGG | - | chr6_2:18839619-18839638 | Msa0911680:intron | 50.0% | |
| GCGGTCATCACTTCGTGATT+GGG | - | chr6_2:18839620-18839639 | Msa0911680:intron | 50.0% | |
| GGCAAACCAAGACCTTCAGA+AGG | - | chr6_2:18839653-18839672 | Msa0911680:intron | 50.0% | |
| ! | CATGGACCTTCTGAAGGTCT+TGG | + | chr6_2:18839662-18839681 | None:intergenic | 50.0% |
| CAAGGTCATGGACCTTCTGA+AGG | + | chr6_2:18839668-18839687 | None:intergenic | 50.0% | |
| TCAGAAGGTCCATGACCTTG+TGG | - | chr6_2:18839668-18839687 | Msa0911680:intron | 50.0% | |
| CAGAAGGTCCATGACCTTGT+GGG | - | chr6_2:18839669-18839688 | Msa0911680:intron | 50.0% | |
| GTTGTACAGTCTGGTTACCG+CGG | + | chr6_2:18839715-18839734 | None:intergenic | 50.0% | |
| !! | TTCGTCGGTGTTGTACAGTC+TGG | + | chr6_2:18839724-18839743 | None:intergenic | 50.0% |
| AGACTGTACAACACCGACGA+AGG | - | chr6_2:18839723-18839742 | Msa0911680:intron | 50.0% | |
| CAATACAAGCGGACCTTCGT+CGG | + | chr6_2:18839739-18839758 | None:intergenic | 50.0% | |
| TCTCACCTTAGAGAGTGGAC+AGG | + | chr6_2:18839778-18839797 | None:intergenic | 50.0% | |
| !!! | TTTTGGGATGGGTGACCTAC+CGG | - | chr6_2:18840638-18840657 | Msa0911680:CDS | 50.0% |
| CACGCTGAAAAGACTCGTGT+TGG | - | chr6_2:18840706-18840725 | Msa0911680:CDS | 50.0% | |
| ACGGATCTACACTACAACCG+CGG | - | chr6_2:18840869-18840888 | Msa0911680:CDS | 50.0% | |
| TGAAGTGCAACCTGAAACCG+AGG | - | chr6_2:18840989-18841008 | Msa0911680:CDS | 50.0% | |
| ! | GCACCCTTCACCCACACTTT+TGG | + | chr6_2:18839294-18839313 | None:intergenic | 55.0% |
| GAAAGAAGGCCTGCACACTC+CGG | - | chr6_2:18839446-18839465 | Msa0911680:intron | 55.0% | |
| TTGCAACTTCCGGAGTGTGC+AGG | + | chr6_2:18839458-18839477 | None:intergenic | 55.0% | |
| CATTGTCGTGCCTTGTGCAC+CGG | + | chr6_2:18840419-18840438 | None:intergenic | 55.0% | |
| GCACAAGGCACGACAATGAG+CGG | - | chr6_2:18840421-18840440 | Msa0911680:CDS | 55.0% | |
| CGGCTCCCGACAGCTTATAA+AGG | - | chr6_2:18840441-18840460 | Msa0911680:CDS | 55.0% | |
| ACGGAATGAGAGGGATCCTG+AGG | - | chr6_2:18840476-18840495 | Msa0911680:CDS | 55.0% | |
| TCTCATACCTACACGGCCTC+AGG | + | chr6_2:18840495-18840514 | None:intergenic | 55.0% | |
| ! | TTTGGGATGGGTGACCTACC+GGG | - | chr6_2:18840639-18840658 | Msa0911680:CDS | 55.0% |
| TGACCTACCGGGAAGTTTCC+CGG | - | chr6_2:18840650-18840669 | Msa0911680:CDS | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | + | chr6_2:18840656-18840675 | None:intergenic | 55.0% | |
| ACGCTTACCGGGAAACTTCC+CGG | + | chr6_2:18840660-18840679 | None:intergenic | 55.0% | |
| CACTACAACCGCGGAAACCT+TGG | - | chr6_2:18840878-18840897 | Msa0911680:CDS | 55.0% | |
| ! | GCACCCTTCACCCACACTTT+TGG | + | chr6_2:18839294-18839313 | None:intergenic | 55.0% |
| GAAAGAAGGCCTGCACACTC+CGG | - | chr6_2:18839446-18839465 | Msa0911680:intron | 55.0% | |
| TTGCAACTTCCGGAGTGTGC+AGG | + | chr6_2:18839458-18839477 | None:intergenic | 55.0% | |
| CATTGTCGTGCCTTGTGCAC+CGG | + | chr6_2:18840419-18840438 | None:intergenic | 55.0% | |
| GCACAAGGCACGACAATGAG+CGG | - | chr6_2:18840421-18840440 | Msa0911680:CDS | 55.0% | |
| CGGCTCCCGACAGCTTATAA+AGG | - | chr6_2:18840441-18840460 | Msa0911680:CDS | 55.0% | |
| ACGGAATGAGAGGGATCCTG+AGG | - | chr6_2:18840476-18840495 | Msa0911680:CDS | 55.0% | |
| TCTCATACCTACACGGCCTC+AGG | + | chr6_2:18840495-18840514 | None:intergenic | 55.0% | |
| ! | TTTGGGATGGGTGACCTACC+GGG | - | chr6_2:18840639-18840658 | Msa0911680:CDS | 55.0% |
| TGACCTACCGGGAAGTTTCC+CGG | - | chr6_2:18840650-18840669 | Msa0911680:CDS | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | + | chr6_2:18840656-18840675 | None:intergenic | 55.0% | |
| ACGCTTACCGGGAAACTTCC+CGG | + | chr6_2:18840660-18840679 | None:intergenic | 55.0% | |
| CACTACAACCGCGGAAACCT+TGG | - | chr6_2:18840878-18840897 | Msa0911680:CDS | 55.0% | |
| GCTCGAGTCCCACAAGGTCA+TGG | + | chr6_2:18839680-18839699 | None:intergenic | 60.0% | |
| GACCTTGTGGGACTCGAGCA+TGG | - | chr6_2:18839681-18839700 | Msa0911680:intron | 60.0% | |
| GTCCATGCTCGAGTCCCACA+AGG | + | chr6_2:18839686-18839705 | None:intergenic | 60.0% | |
| ! | GGGACTCGAGCATGGACTGA+CGG | - | chr6_2:18839689-18839708 | Msa0911680:intron | 60.0% |
| TCCTCACTCGCACGCTTACC+GGG | + | chr6_2:18840671-18840690 | None:intergenic | 60.0% | |
| GTCCTCACTCGCACGCTTAC+CGG | + | chr6_2:18840672-18840691 | None:intergenic | 60.0% | |
| GCTCGAGTCCCACAAGGTCA+TGG | + | chr6_2:18839680-18839699 | None:intergenic | 60.0% | |
| GACCTTGTGGGACTCGAGCA+TGG | - | chr6_2:18839681-18839700 | Msa0911680:intron | 60.0% | |
| GTCCATGCTCGAGTCCCACA+AGG | + | chr6_2:18839686-18839705 | None:intergenic | 60.0% | |
| ! | GGGACTCGAGCATGGACTGA+CGG | - | chr6_2:18839689-18839708 | Msa0911680:intron | 60.0% |
| TCCTCACTCGCACGCTTACC+GGG | + | chr6_2:18840671-18840690 | None:intergenic | 60.0% | |
| GTCCTCACTCGCACGCTTAC+CGG | + | chr6_2:18840672-18840691 | None:intergenic | 60.0% | |
| ACCCACGGCTGACGAGAGCA+AGG | - | chr6_2:18840384-18840403 | Msa0911680:CDS | 65.0% | |
| CCCTTGCTCTCGTCAGCCGT+GGG | + | chr6_2:18840388-18840407 | None:intergenic | 65.0% | |
| CCCACGGCTGACGAGAGCAA+GGG | - | chr6_2:18840385-18840404 | Msa0911680:CDS | 65.0% | |
| TCCCTTGCTCTCGTCAGCCG+TGG | + | chr6_2:18840389-18840408 | None:intergenic | 65.0% | |
| GGCTGACGAGAGCAAGGGAG+TGG | - | chr6_2:18840390-18840409 | Msa0911680:CDS | 65.0% | |
| GAGAGCAAGGGAGTGGTCGC+CGG | - | chr6_2:18840397-18840416 | Msa0911680:CDS | 65.0% | |
| GAGGGATCCTGAGGCCGTGT+AGG | - | chr6_2:18840485-18840504 | Msa0911680:CDS | 65.0% | |
| TCCCGGTAAGCGTGCGAGTG+AGG | - | chr6_2:18840667-18840686 | Msa0911680:CDS | 65.0% | |
| CGTGCGAGTGAGGACGAGTG+CGG | - | chr6_2:18840677-18840696 | Msa0911680:CDS | 65.0% | |
| ACCCACGGCTGACGAGAGCA+AGG | - | chr6_2:18840384-18840403 | Msa0911680:CDS | 65.0% | |
| CCCTTGCTCTCGTCAGCCGT+GGG | + | chr6_2:18840388-18840407 | None:intergenic | 65.0% | |
| CCCACGGCTGACGAGAGCAA+GGG | - | chr6_2:18840385-18840404 | Msa0911680:CDS | 65.0% | |
| TCCCTTGCTCTCGTCAGCCG+TGG | + | chr6_2:18840389-18840408 | None:intergenic | 65.0% | |
| GGCTGACGAGAGCAAGGGAG+TGG | - | chr6_2:18840390-18840409 | Msa0911680:CDS | 65.0% | |
| GAGAGCAAGGGAGTGGTCGC+CGG | - | chr6_2:18840397-18840416 | Msa0911680:CDS | 65.0% | |
| GAGGGATCCTGAGGCCGTGT+AGG | - | chr6_2:18840485-18840504 | Msa0911680:CDS | 65.0% | |
| TCCCGGTAAGCGTGCGAGTG+AGG | - | chr6_2:18840667-18840686 | Msa0911680:CDS | 65.0% | |
| CGTGCGAGTGAGGACGAGTG+CGG | - | chr6_2:18840677-18840696 | Msa0911680:CDS | 65.0% | |
| ! | CGAGCATGGACTGACGGCCG+CGG | - | chr6_2:18839695-18839714 | Msa0911680:intron | 70.0% |
| GGAGTGGTCGCCGGTGCACA+AGG | - | chr6_2:18840406-18840425 | Msa0911680:CDS | 70.0% | |
| ! | CGAGCATGGACTGACGGCCG+CGG | - | chr6_2:18839695-18839714 | Msa0911680:intron | 70.0% |
| GGAGTGGTCGCCGGTGCACA+AGG | - | chr6_2:18840406-18840425 | Msa0911680:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 18838997 | 18841139 | 18838997 | ID=Msa0911680;Name=Msa0911680 |
| chr6_2 | mRNA | 18838997 | 18841139 | 18838997 | ID=Msa0911680-mRNA-1;Parent=Msa0911680;Name=Msa0911680-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0|1|1|1|3|0|342 |
| chr6_2 | exon | 18840630 | 18841139 | 18840630 | ID=Msa0911680-mRNA-1:exon:3883;Parent=Msa0911680-mRNA-1 |
| chr6_2 | exon | 18840345 | 18840557 | 18840345 | ID=Msa0911680-mRNA-1:exon:3882;Parent=Msa0911680-mRNA-1 |
| chr6_2 | exon | 18838997 | 18839302 | 18838997 | ID=Msa0911680-mRNA-1:exon:3881;Parent=Msa0911680-mRNA-1 |
| chr6_2 | CDS | 18840630 | 18841139 | 18840630 | ID=Msa0911680-mRNA-1:cds;Parent=Msa0911680-mRNA-1 |
| chr6_2 | CDS | 18840345 | 18840557 | 18840345 | ID=Msa0911680-mRNA-1:cds;Parent=Msa0911680-mRNA-1 |
| chr6_2 | CDS | 18838997 | 18839302 | 18838997 | ID=Msa0911680-mRNA-1:cds;Parent=Msa0911680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
