AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078590 MtrunA17_Chr3g0101871 46.604 957 495 9 311 1262 180 1125 0.0 843
Msa0078590 MtrunA17_Chr7g0269651 46.491 798 410 6 288 1076 198 987 0.0 750
Msa0078590 MtrunA17_Chr7g0270391 60.442 407 161 0 776 1182 1 407 2.96e-172 527
Msa0078590 MtrunA17_Chr1g0173671 44.522 575 312 3 282 856 192 759 1.29e-166 525
Msa0078590 MtrunA17_Chr3g0101861 52.340 470 219 1 1264 1733 1 465 6.42e-165 509
Msa0078590 MtrunA17_Chr1g0206501 45.363 496 270 1 1026 1520 3 498 3.97e-147 462
Msa0078590 MtrunA17_Chr1g0206491 48.140 430 219 2 318 747 151 576 7.72e-133 426
Msa0078590 MtrunA17_Chr1g0173691 52.561 371 176 0 1363 1733 1 371 1.97e-127 403
Msa0078590 MtrunA17_Chr3g0093501 57.343 286 105 2 698 983 1 269 1.28e-111 355
Msa0078590 MtrunA17_Chr7g0269671 51.807 332 159 1 1363 1693 1 332 1.10e-110 355
Msa0078590 MtrunA17_Chr3g0133361 55.631 293 130 0 1441 1733 1 293 1.35e-107 345
Msa0078590 MtrunA17_Chr1g0173681 48.512 336 171 1 880 1215 2 335 4.53e-104 337
Msa0078590 MtrunA17_Chr6g0472831 55.777 251 111 0 1441 1691 1 251 4.03e-93 301
Msa0078590 MtrunA17_Chr1g0206511 58.586 198 82 0 1536 1733 1 198 2.06e-73 243
Msa0078590 MtrunA17_Chr7g0248821 59.898 197 79 0 1537 1733 1 197 3.64e-73 242
Msa0078590 MtrunA17_Chr7g0269661 43.421 228 129 0 1113 1340 1 228 6.67e-58 200
Msa0078590 MtrunA17_Chr5g0400991 40.909 176 101 1 506 681 2 174 6.02e-41 149
Msa0078590 MtrunA17_Chr3g0100401 47.244 127 67 0 1536 1662 1 127 1.88e-34 129
Msa0078590 MtrunA17_Chr3g0139511 63.514 74 27 0 1660 1733 107 180 2.55e-23 99.0
Msa0078590 MtrunA17_Chr4g0021841 51.685 89 43 0 1200 1288 2 90 2.05e-21 90.5
Msa0078590 MtrunA17_Chr2g0308591 59.322 59 22 1 1346 1404 47 103 1.98e-16 76.6
Msa0078590 MtrunA17_Chr3g0129801 68.750 48 15 0 1636 1683 7 54 7.27e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078590 AT3G51690.1 41.877 277 156 3 1458 1733 59 331 1.59e-62 217
Msa0078590 AT3G51700.1 43.011 279 147 5 1458 1730 60 332 1.77e-61 215
Msa0078590 AT5G28780.1 40.659 273 153 4 1465 1733 63 330 3.26e-55 196

Find 345 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTAACTCTTCTAATATT+TGG 0.111011 1_2:-56244575 Msa0078590:CDS
TGGAGGAAAGGTTGTCATTT+TGG 0.159940 1_2:-56244664 Msa0078590:CDS
TTCATCAGCAATGAATTTAT+TGG 0.179650 1_2:+56245163 None:intergenic
ATCACAGGACCTCTTGATTT+TGG 0.187343 1_2:-56248378 Msa0078590:intron
ACAAGAAACATGAGGTTAAT+TGG 0.208778 1_2:-56244528 Msa0078590:CDS
GATTTGGTCCCCTCAGATTC+AGG 0.227188 1_2:-56243919 Msa0078590:CDS
GTGTTTCCGCGCGGTGATTA+TGG 0.230358 1_2:-56247497 Msa0078590:CDS
GAGAAGCAAGTCTAATTATA+TGG 0.240520 1_2:-56244788 Msa0078590:CDS
GAAAGCTACTTGGAAGTTAT+TGG 0.247737 1_2:-56245659 Msa0078590:CDS
CAATAACTTGCAACTCAAAT+TGG 0.248972 1_2:-56247061 Msa0078590:CDS
CTTCCACATAAAGGTCTTTC+CGG 0.253434 1_2:+56244992 None:intergenic
GTAGCTTTCCATACATTATC+AGG 0.258340 1_2:+56245673 None:intergenic
GTGGAATCTATGAACTTCTT+TGG 0.267086 1_2:+56246564 None:intergenic
ATACTTCCAGATTCATTTAC+AGG 0.272715 1_2:-56247164 Msa0078590:CDS
ATTTGGAGGTTTGCTCTATC+AGG 0.273042 1_2:+56246339 None:intergenic
AGCAATGAATTTATTGGTTT+GGG 0.274067 1_2:+56245169 None:intergenic
CCTAATCCACCCGTTATAAA+TGG 0.275632 1_2:-56249892 Msa0078590:CDS
AGCAATGATAACAGTAGTTT+TGG 0.284118 1_2:+56248210 None:intergenic
AGGGTTGAAAATGCTAATTT+TGG 0.285037 1_2:-56243728 Msa0078590:CDS
TTTCTAAAAGATTTGCATAA+AGG 0.289259 1_2:+56247758 None:intergenic
AATCTTGCCTTGTGACCTTA+TGG 0.292302 1_2:+56244956 None:intergenic
CAGCAATGAATTTATTGGTT+TGG 0.295761 1_2:+56245168 None:intergenic
CCCTTCTTCGCTATATATCT+TGG 0.307677 1_2:+56248749 None:intergenic
AACAACCTTAATGCCATCTT+TGG 0.309688 1_2:+56247704 None:intergenic
TTCTAAAAGATTTGCATAAA+GGG 0.309893 1_2:+56247759 None:intergenic
CACCATTTGCATACGAAGTC+TGG 0.311273 1_2:+56248351 None:intergenic
TTAAATGACATAAAATGTTC+TGG 0.319742 1_2:-56244126 Msa0078590:CDS
TCAAAATCCAAACGCGCAAT+AGG 0.322452 1_2:+56248683 None:intergenic
CTCATTCAAGTTTGTTAAAG+AGG 0.322502 1_2:-56249012 Msa0078590:CDS
CTCATTCAAGTTTGTTAAAG+AGG 0.322502 1_2:-56249710 Msa0078590:CDS
AAGAACTTGAACAAACCTTT+TGG 0.322714 1_2:-56244684 Msa0078590:CDS
CAAGAGAGGGATTGCGAGTC+TGG 0.323785 1_2:-56247371 Msa0078590:CDS
CAAGAAACATGAGGTTAATT+GGG 0.324971 1_2:-56244527 Msa0078590:CDS
AGGACTCCCTATTGCGCGTT+TGG 0.331643 1_2:-56248690 Msa0078590:CDS
CAAGATGCATGTTATGCTCT+TGG 0.333618 1_2:-56245814 Msa0078590:CDS
AGACAAAGAAAACATAAATT+TGG 0.336476 1_2:-56248530 Msa0078590:CDS
AGATGGCATTAAGGTTGTTC+AGG 0.336595 1_2:-56247700 Msa0078590:CDS
GCAAACTTTGGAGTACTTCC+TGG 0.340189 1_2:+56248009 None:intergenic
GATGATAAAGAGTTTATTGA+TGG 0.340391 1_2:-56245781 Msa0078590:CDS
CACCTCCAAAGATGGCATTA+AGG 0.340517 1_2:-56247709 Msa0078590:CDS
TAACGCTTTATTTCATCAAT+TGG 0.344222 1_2:+56246282 None:intergenic
GATAATGGACTTCTTTGTTC+AGG 0.344390 1_2:+56248962 None:intergenic
GACTTGCTTCTCTAAGCAAC+TGG 0.346401 1_2:+56244799 None:intergenic
CCATTTATAACGGGTGGATT+AGG 0.348333 1_2:+56249892 None:intergenic
AACCTTTCAAAAGGGTTGTA+AGG 0.349066 1_2:-56245884 Msa0078590:CDS
GATAATCGACTTCTTTGTTC+AGG 0.349806 1_2:+56249660 None:intergenic
TTGACAGCATAAGGAAAATT+CGG 0.350273 1_2:+56248269 None:intergenic
ATGAGGAGGATATACCTTAC+AGG 0.351957 1_2:-56247472 Msa0078590:CDS
TTCCTACAATGTTTCTTGCT+TGG 0.353458 1_2:-56246086 Msa0078590:CDS
CACAAAGGCTATCTTATATT+CGG 0.357583 1_2:-56247283 Msa0078590:CDS
CATAGCAAAGCACAATGAAA+TGG 0.358313 1_2:+56243864 None:intergenic
TCATTACAGGTAAGGGTATT+GGG 0.358778 1_2:-56243966 Msa0078590:CDS
CTACTGTTATCATTGCTTGA+TGG 0.358872 1_2:-56248204 Msa0078590:CDS
TCAGAACTTAGATACTCTTT+TGG 0.360777 1_2:+56244210 None:intergenic
GATCCGTGATATGGTTGAAC+AGG 0.361827 1_2:-56247735 Msa0078590:CDS
ATAACTGCCACTGTCATTAC+AGG 0.364417 1_2:-56243979 Msa0078590:CDS
AGTAAACTTTGATGGAAATT+CGG 0.366851 1_2:+56246017 None:intergenic
TTCAAAATCAACCTATGGTT+TGG 0.369321 1_2:+56244099 None:intergenic
ATGGTACTCAGTTGGACAAT+AGG 0.375942 1_2:-56246476 Msa0078590:CDS
TTAGATACAACACATAATTA+TGG 0.375959 1_2:-56250219 Msa0078590:CDS
CACAACCAAGGAAATTGATA+TGG 0.378025 1_2:-56246727 Msa0078590:CDS
CATGCGGAATTCAAATTTGC+TGG 0.378286 1_2:+56246618 None:intergenic
TGTCTTCTTGAAAATTTGAA+TGG 0.381833 1_2:+56243892 None:intergenic
ATTGATCCCAAGGATGGATT+TGG 0.386163 1_2:-56243935 Msa0078590:CDS
TAACAAACTTGAATGAGTTA+AGG 0.387838 1_2:+56249018 None:intergenic
TAACAAACTTGAATGAGTTA+AGG 0.387838 1_2:+56249716 None:intergenic
TTGAGGGTCAACAATGTGTT+AGG 0.387951 1_2:-56246158 Msa0078590:CDS
ATGTTTGCCTTTACATCCCT+TGG 0.388827 1_2:-56248129 Msa0078590:CDS
GATTGTATTAAAACTGTCAA+TGG 0.391369 1_2:-56245856 Msa0078590:CDS
GTCATTACAGGTAAGGGTAT+TGG 0.392651 1_2:-56243967 Msa0078590:CDS
ATGTTCGAAACATTGGATAA+TGG 0.394106 1_2:+56248947 None:intergenic
TGATGATATTTGACAACATT+CGG 0.394843 1_2:+56246114 None:intergenic
GGTGAACCTGTAAATGAATC+TGG 0.395348 1_2:+56247158 None:intergenic
CCGCCTCAATTTATATTAAG+TGG 0.395853 1_2:-56248069 Msa0078590:CDS
TCTTAAAATCGGCCATCATT+TGG 0.400023 1_2:+56246949 None:intergenic
TTGTATGGATATGGTGGAAC+CGG 0.400610 1_2:-56245011 Msa0078590:CDS
TGCTGAAATACCTTTGTCAT+TGG 0.402399 1_2:+56250576 None:intergenic
ATCAATAGTAATGGATTGTA+AGG 0.403188 1_2:+56246444 None:intergenic
TCATCTTCAAATTCCCTGTA+AGG 0.404246 1_2:+56247458 None:intergenic
AAAATAGAATTGACCATCTT+GGG 0.404721 1_2:+56245034 None:intergenic
CCTATATCCAAAGTTGCATT+TGG 0.405233 1_2:-56246676 Msa0078590:CDS
GATGAAGACTATGATATTCA+AGG 0.407109 1_2:-56244171 Msa0078590:CDS
ATTACATTTGCACATTCTTC+AGG 0.409240 1_2:-56248926 Msa0078590:intron
ATTACATTTGCACATTCTTC+AGG 0.409240 1_2:-56249624 Msa0078590:intron
GGCAGATAAGTAAACTTTGA+TGG 0.412961 1_2:+56246009 None:intergenic
CATTAAGGTTGTTCAGGAAA+AGG 0.417610 1_2:-56247694 Msa0078590:CDS
TCATTATATCGCGCATCGTT+CGG 0.418235 1_2:+56244721 None:intergenic
CTTGTTTGAGAAGGAATGAA+TGG 0.418262 1_2:+56249865 None:intergenic
TTATTCTACAATAATGAAAT+CGG 0.419312 1_2:-56245063 Msa0078590:CDS
AAAGTTAGCATCATTAGAAA+GGG 0.422388 1_2:-56250614 Msa0078590:CDS
TTGAATTCCGCATGCATGAA+TGG 0.424048 1_2:-56246609 Msa0078590:CDS
TTTGGAGGTTCCTCTACAAA+AGG 0.426707 1_2:+56248228 None:intergenic
TAATTATGGTGTAAATTCAA+TGG 0.426990 1_2:-56250205 Msa0078590:CDS
TATAACCATATCAATTTCCT+TGG 0.427180 1_2:+56246722 None:intergenic
CGACGGATCCTCAATATTCC+AGG 0.429783 1_2:-56245613 Msa0078590:intron
TCAAAGCTCAACAATGGAAG+AGG 0.431865 1_2:-56248093 Msa0078590:CDS
CCAAATGCAACTTTGGATAT+AGG 0.432260 1_2:+56246676 None:intergenic
AGTTGTATGTTGCCGTATCA+AGG 0.432390 1_2:-56243765 Msa0078590:CDS
GGATGGATTTGATCTTTCAT+TGG 0.435263 1_2:-56247816 Msa0078590:CDS
CGACTTCTTTGTTCAGGTGG+TGG 0.435866 1_2:+56249666 None:intergenic
TACTGAAGTGGCATGTATAA+TGG 0.437187 1_2:+56247527 None:intergenic
CTGGGTAAGGCATGGATTTG+TGG 0.437498 1_2:+56245210 None:intergenic
GAAGTTGCTGGGTTGATAAT+AGG 0.438894 1_2:-56247632 Msa0078590:CDS
TCCAAGATATATAGCGAAGA+AGG 0.440078 1_2:-56248750 Msa0078590:CDS
AAAACTCTACAAATGATATC+AGG 0.441301 1_2:+56246987 None:intergenic
TCAAGGGTAACTACCAAGAA+AGG 0.443875 1_2:-56243748 Msa0078590:CDS
ATTAAGGTTGTTCAGGAAAA+GGG 0.443951 1_2:-56247693 Msa0078590:CDS
TGCACAAGCCTGATAATGTA+TGG 0.444340 1_2:-56245681 Msa0078590:CDS
ACTGTCAATGGCAAGCTCTA+TGG 0.444866 1_2:-56245844 Msa0078590:CDS
CCTCTTTCACCATTGATGAA+TGG 0.445314 1_2:-56250410 Msa0078590:intron
GAAAGTTAGCATCATTAGAA+AGG 0.446161 1_2:-56250615 Msa0078590:CDS
CGGACTATGCATTGAGGTAT+CGG 0.447300 1_2:-56249948 Msa0078590:CDS
ATGACAACCTTTCCTCCAAA+AGG 0.447384 1_2:+56244669 None:intergenic
ATGGAAATTCGGCATAAGTA+AGG 0.449449 1_2:+56246028 None:intergenic
TGCCTTCATAATATCAAGTC+TGG 0.449711 1_2:+56244599 None:intergenic
TATGACAATAAACAAGAGTC+AGG 0.450662 1_2:-56243845 Msa0078590:CDS
GACAATGATCCTCGAAAAGC+TGG 0.451047 1_2:-56247197 Msa0078590:CDS
ATTTGGTCCCCTCAGATTCA+GGG 0.452334 1_2:-56243918 Msa0078590:CDS
GAAACGGCCAAATGCAACTT+TGG 0.454729 1_2:+56246669 None:intergenic
GAAAATTCGGAATCATTGTT+CGG 0.455825 1_2:+56248282 None:intergenic
CCTACTGTAGATGAAGTTGC+TGG 0.455842 1_2:-56247644 Msa0078590:CDS
ATCTTCTAACCATTCATCAA+TGG 0.457102 1_2:+56250401 None:intergenic
TGCAACTTTGGATATAGGTC+TGG 0.457678 1_2:+56246681 None:intergenic
AGGTAAGGGTATTGGGCAAA+AGG 0.459074 1_2:-56243959 Msa0078590:CDS
GAGGGGACCAAATCCATCCT+TGG 0.463653 1_2:+56243928 None:intergenic
AACCTTAATGCCATCTTTGG+AGG 0.468328 1_2:+56247707 None:intergenic
TTACTTATCTGCCTGACAAA+AGG 0.468571 1_2:-56245999 Msa0078590:CDS
TAAGTGGACAGAATTATCAT+AGG 0.468874 1_2:-56248053 Msa0078590:CDS
TCTTACATTCCTGTAGGCTC+AGG 0.469938 1_2:-56245934 Msa0078590:CDS
CAAGCAAGTGGGTTATGTAA+TGG 0.471462 1_2:-56244039 Msa0078590:CDS
TTGTAACCCACTCAACAAAT+CGG 0.471661 1_2:+56247238 None:intergenic
TGACTTGTTCAACAGAATCA+AGG 0.471691 1_2:+56244265 None:intergenic
ACCTTTCAAAAGGGTTGTAA+GGG 0.472703 1_2:-56245883 Msa0078590:CDS
TAGCCTTTGTGCTTCAATCA+TGG 0.473502 1_2:+56247295 None:intergenic
TATACAAAAGAAGGGACAAT+GGG 0.476982 1_2:-56246515 Msa0078590:CDS
GAGATTAGCTTTACATCTTG+AGG 0.477238 1_2:-56246175 Msa0078590:CDS
AATGGTGCAAAGCTAAACTT+TGG 0.478219 1_2:-56248335 Msa0078590:CDS
GAGTGTCGTAGATGTATAGT+TGG 0.478821 1_2:+56247986 None:intergenic
GATTATGATGAGACGGAAGA+AGG 0.479733 1_2:-56247608 Msa0078590:CDS
GGACTTCTTTGTTCAGGTGG+TGG 0.481060 1_2:+56248968 None:intergenic
GAATGGAGTGCCATTTATAA+CGG 0.482275 1_2:+56249882 None:intergenic
GGACAATCATTGTCAAAGGT+TGG 0.482733 1_2:-56243823 Msa0078590:CDS
CAAAATCCAAACGCGCAATA+GGG 0.483228 1_2:+56248684 None:intergenic
GGACAGAATTATCATAGGAT+TGG 0.483398 1_2:-56248048 Msa0078590:CDS
ATGTATAGTTGGGCAAACTT+TGG 0.483498 1_2:+56247997 None:intergenic
TGAAAACACTTTGCCTCCAA+GGG 0.486765 1_2:+56248113 None:intergenic
TTCAAATTTGCTGGTCCGCA+TGG 0.487368 1_2:+56246627 None:intergenic
GCTGAAATACCTTTGTCATT+GGG 0.488153 1_2:+56250577 None:intergenic
CAGTCTTCAAAATCAACCTA+TGG 0.488566 1_2:+56244094 None:intergenic
CCATTCATCAATGGTGAAAG+AGG 0.488885 1_2:+56250410 None:intergenic
ATAATGTATGGAAAGCTACT+TGG 0.489603 1_2:-56245669 Msa0078590:CDS
ACTATGATATTCAAGGAGAT+TGG 0.491033 1_2:-56244164 Msa0078590:CDS
CTTGGTAGTTACCCTTGATA+CGG 0.491351 1_2:+56243753 None:intergenic
GTTATTGTGATGAACAGATC+CGG 0.491357 1_2:+56247077 None:intergenic
TCAACAATGTGTTAGGTTCA+AGG 0.492426 1_2:-56246151 Msa0078590:CDS
TCTAGGTAATGCTTGCTTCG+AGG 0.492809 1_2:+56248174 None:intergenic
ATAGCAAAGCACAATGAAAT+GGG 0.493238 1_2:+56243865 None:intergenic
CCTCGGCCTGTGTTTACACA+TGG 0.495403 1_2:-56243790 Msa0078590:CDS
GAAAAGATACTTTATTGCAT+TGG 0.496304 1_2:+56246380 None:intergenic
CAGGTGAACTTTACTATATG+AGG 0.496708 1_2:-56245915 Msa0078590:CDS
GGAAGTTTATTGCCTGAGCC+AGG 0.496754 1_2:-56248027 Msa0078590:CDS
AGGGGACCAAATCCATCCTT+GGG 0.497146 1_2:+56243929 None:intergenic
TGTCCACTTAATATAAATTG+AGG 0.498055 1_2:+56248066 None:intergenic
ATGGCAATCTGTAAGAGATT+CGG 0.498341 1_2:-56247104 Msa0078590:CDS
TTTCTGTTAGTGGTCAATCA+AGG 0.498734 1_2:-56250246 Msa0078590:intron
AGACATTATCTGCAGCCATA+AGG 0.498812 1_2:-56244971 Msa0078590:CDS
TGCCACTGTCATTACAGGTA+AGG 0.499972 1_2:-56243974 Msa0078590:CDS
TTGAAAACACTTTGCCTCCA+AGG 0.499982 1_2:+56248112 None:intergenic
AAAACAGTGCCTGTGCATCA+TGG 0.500230 1_2:+56244755 None:intergenic
AGATTAGCTTTACATCTTGA+GGG 0.501062 1_2:-56246174 Msa0078590:CDS
CTAAACTTTGGATCGAAGAG+AGG 0.503979 1_2:-56248323 Msa0078590:CDS
AAACAGTGCCTGTGCATCAT+GGG 0.504069 1_2:+56244756 None:intergenic
ATCCAGACTTCGTATGCAAA+TGG 0.504271 1_2:-56248353 Msa0078590:CDS
CCGTTGAGTTTCAAAAGAGA+GGG 0.504560 1_2:-56246800 Msa0078590:CDS
AGATAATGTCTTCCACATAA+AGG 0.505155 1_2:+56244983 None:intergenic
AATGGACTTCTTTGTTCAGG+TGG 0.505184 1_2:+56248965 None:intergenic
AATGGAGTGCCATTTATAAC+GGG 0.505326 1_2:+56249883 None:intergenic
AGAAGGAAGAGATATTATAG+TGG 0.507311 1_2:-56247591 Msa0078590:CDS
AAGTTTCAGATGGGGCACTA+AGG 0.507545 1_2:-56249918 Msa0078590:CDS
TTTGCCTTTACATCCCTTGG+AGG 0.508907 1_2:-56248126 Msa0078590:CDS
AGAATGAGTTGTCTTGCCTC+CGG 0.510120 1_2:+56244890 None:intergenic
TCACCGCGCGGAAACACTAA+AGG 0.510434 1_2:+56247503 None:intergenic
AGAAGCAAGTCTAATTATAT+GGG 0.510497 1_2:-56244787 Msa0078590:CDS
AGGGGTTCTAAGAGGTGCAT+TGG 0.511370 1_2:+56250430 None:intergenic
GATATTATAGTGGATGATGT+AGG 0.514665 1_2:-56247581 Msa0078590:CDS
GTTGTTCAGGAAAAGGGAAA+AGG 0.515204 1_2:-56247687 Msa0078590:CDS
ACCATCCTCATCTATTGAAG+TGG 0.517234 1_2:+56246545 None:intergenic
TTGGAGGTTCCTCTACAAAA+GGG 0.517638 1_2:+56248229 None:intergenic
AACCAAGCAAGAAACATTGT+AGG 0.521117 1_2:+56246084 None:intergenic
GAATGAGTTGTCTTGCCTCC+GGG 0.521164 1_2:+56244891 None:intergenic
ATTGCTTCTTTATTGTTGCC+CGG 0.521722 1_2:-56244909 Msa0078590:CDS
ATTCGTTCCGATTTGTTGAG+TGG 0.523233 1_2:-56247245 Msa0078590:CDS
AGAAACATCGATCAAGCAAG+TGG 0.524047 1_2:-56244051 Msa0078590:CDS
TGGTATCTCATCAATAGTAA+TGG 0.524544 1_2:+56246435 None:intergenic
AGTGTCGTAGATGTATAGTT+GGG 0.525595 1_2:+56247987 None:intergenic
AGGTTAATTGGGGATGTCAC+AGG 0.525789 1_2:-56244516 Msa0078590:CDS
ATGCATCATGAATGTTGAAA+CGG 0.526143 1_2:+56246653 None:intergenic
ACAAAAGGATGTGGCATCCA+AGG 0.528107 1_2:-56245984 Msa0078590:CDS
TTTGGAGTACTTCCTGGCTC+AGG 0.528110 1_2:+56248015 None:intergenic
TATGTTCTTTCGTTGATTGA+AGG 0.528559 1_2:-56244237 Msa0078590:CDS
TTCGTTCCGATTTGTTGAGT+GGG 0.529200 1_2:-56247244 Msa0078590:CDS
CATTCATCAATGGTGAAAGA+GGG 0.530284 1_2:+56250411 None:intergenic
ATGTAGGCAGAGGATTGAGA+AGG 0.530515 1_2:-56247565 Msa0078590:CDS
CACCAGACTTGATATTATGA+AGG 0.532911 1_2:-56244601 Msa0078590:CDS
TTTGCCTCCAAGGGATGTAA+AGG 0.533851 1_2:+56248122 None:intergenic
ATGAGGCGCCCATGATGCAC+AGG 0.533917 1_2:-56244764 Msa0078590:CDS
TAAAGTTCACCTGAGCCTAC+AGG 0.533935 1_2:+56245925 None:intergenic
CTGTAAGAGATTCGGCTACC+CGG 0.535601 1_2:-56247096 Msa0078590:CDS
TTGATAACATCGACAATCAA+AGG 0.536389 1_2:-56244320 Msa0078590:CDS
AAATGTAATGTTCGAAACAT+TGG 0.538621 1_2:+56248940 None:intergenic
AAATGTAATGTTCGAAACAT+TGG 0.538621 1_2:+56249638 None:intergenic
GGAGGAATGCACAATTCCTC+AGG 0.539422 1_2:+56244393 None:intergenic
GTTTCAACATTCATGATGCA+TGG 0.539649 1_2:-56246651 Msa0078590:CDS
TCATCGAACTCAGCAAAAGA+TGG 0.539968 1_2:-56248635 Msa0078590:intron
ACTTGGAAGTTATTGGCAGA+TGG 0.540160 1_2:-56245652 Msa0078590:CDS
AAGGGACAATGGGGTTTGTG+TGG 0.540667 1_2:-56246505 Msa0078590:CDS
ATCTTATATTCGGAATAACC+AGG 0.540783 1_2:-56247273 Msa0078590:CDS
TATATGCTCTGATGTTCTCT+AGG 0.542051 1_2:+56248157 None:intergenic
AATCGACTTCTTTGTTCAGG+TGG 0.542323 1_2:+56249663 None:intergenic
AGCAGGAGAACAAGATGAGG+AGG 0.542798 1_2:-56246307 Msa0078590:CDS
ACCGTTGAGTTTCAAAAGAG+AGG 0.542901 1_2:-56246801 Msa0078590:CDS
TGAAGACCTGAAAATAATGT+TGG 0.543548 1_2:-56247792 Msa0078590:CDS
ACAGGGTTCACCTCCAAAGA+TGG 0.543877 1_2:-56247717 Msa0078590:CDS
ACTCAGTGTTAACATGTCCT+TGG 0.544502 1_2:+56246415 None:intergenic
CAATAATTGTCAAGATGCAA+TGG 0.551906 1_2:-56247123 Msa0078590:CDS
CGCAATTAGCAAGGACGAAG+AGG 0.552123 1_2:-56250122 Msa0078590:CDS
GAATGGAAACCCTGAATCTG+AGG 0.552541 1_2:+56243909 None:intergenic
ATAGCATTTGTCTGTCACTC+AGG 0.554713 1_2:+56250453 None:intergenic
TTGCGAGTCACATTGTTCCA+TGG 0.555403 1_2:+56250140 None:intergenic
AGTTTCAGATGGGGCACTAA+GGG 0.555648 1_2:-56249917 Msa0078590:CDS
AATCGGAACGAATAATTCCC+TGG 0.560556 1_2:+56247255 None:intergenic
CAAGGGTAACTACCAAGAAA+GGG 0.560620 1_2:-56243747 Msa0078590:CDS
GATATGATTGCAGATGAAGA+TGG 0.561253 1_2:-56244435 Msa0078590:CDS
TAATATTTGGCGTAGCTGCA+AGG 0.563283 1_2:-56244562 Msa0078590:CDS
CACATTCTGTTGTGGTTGGA+AGG 0.565597 1_2:-56246765 Msa0078590:CDS
AAACATTCATTGTTACAAAG+AGG 0.565980 1_2:-56250099 Msa0078590:CDS
GACTTGTTCAACAGAATCAA+GGG 0.566936 1_2:+56244266 None:intergenic
GGCAAAAGGTATTGATCCCA+AGG 0.568141 1_2:-56243945 Msa0078590:CDS
GAAAAGTTGTTAATGTGCAA+TGG 0.568512 1_2:-56245248 Msa0078590:CDS
CACATGCACACATTCTGTTG+TGG 0.572929 1_2:-56246773 Msa0078590:CDS
AAAGGTATTGATCCCAAGGA+TGG 0.573086 1_2:-56243941 Msa0078590:CDS
TCCACTTCAATAGATGAGGA+TGG 0.573212 1_2:-56246546 Msa0078590:CDS
TGCACACATTCTGTTGTGGT+TGG 0.573506 1_2:-56246769 Msa0078590:CDS
GTCAAATGACTCGAATTCAA+AGG 0.574757 1_2:-56248727 Msa0078590:CDS
AGGTTGTCTTACATTCCTGT+AGG 0.575256 1_2:-56245940 Msa0078590:CDS
GCCACTGTCATTACAGGTAA+GGG 0.577155 1_2:-56243973 Msa0078590:CDS
GAAAGCAGGAGAACAAGATG+AGG 0.577776 1_2:-56246310 Msa0078590:CDS
CCATGTGTAAACACAGGCCG+AGG 0.578133 1_2:+56243790 None:intergenic
CGACAATCCTCTACAAGCGT+TGG 0.579219 1_2:-56244367 Msa0078590:CDS
GTAATTAATGTTGCTTCGAG+CGG 0.579785 1_2:-56244933 Msa0078590:CDS
TCGCAGTTCAAGTGATGGTG+AGG 0.579943 1_2:-56247837 Msa0078590:intron
TCGATGTTATCAACAATACC+TGG 0.581285 1_2:+56244330 None:intergenic
AAAGCTAATCTCAAAACAGC+AGG 0.581492 1_2:+56246186 None:intergenic
AATAGGTGATTATGATGAGA+CGG 0.582297 1_2:-56247615 Msa0078590:CDS
AAGTCTAATTATATGGGATG+AGG 0.582495 1_2:-56244781 Msa0078590:CDS
GATGAAGCTTGACCAAATGA+TGG 0.584340 1_2:-56246961 Msa0078590:CDS
CAATTATTGAACATGTACCT+TGG 0.584510 1_2:+56247137 None:intergenic
GGAGTGCCATTTATAACGGG+TGG 0.584586 1_2:+56249886 None:intergenic
TTATTGTGATGAACAGATCC+GGG 0.586157 1_2:+56247078 None:intergenic
ATCTGCCTGACAAAAGGATG+TGG 0.586389 1_2:-56245993 Msa0078590:CDS
TCTGAGACACAAACATCAAG+AGG 0.586796 1_2:-56250168 Msa0078590:CDS
GCTAATCAAAATTATAGTGA+GGG 0.589055 1_2:-56246057 Msa0078590:CDS
TGAAGATGGACAGAGCATCA+TGG 0.589880 1_2:-56244421 Msa0078590:CDS
ATGTTTCTCAACAACATGAT+CGG 0.590067 1_2:+56244066 None:intergenic
GGTGAAAGAGGGGTTCTAAG+AGG 0.590152 1_2:+56250422 None:intergenic
GATGTTATACTTGTTTGAGA+AGG 0.590329 1_2:+56249856 None:intergenic
AGTTCAAGTGATGGTGAGGA+TGG 0.590580 1_2:-56247833 Msa0078590:CDS
AACATCAAGAGGGCTATCCA+TGG 0.590940 1_2:-56250157 Msa0078590:CDS
ATAGTGGATGATGTAGGCAG+AGG 0.594271 1_2:-56247575 Msa0078590:CDS
TGCTAATCAAAATTATAGTG+AGG 0.594285 1_2:-56246058 Msa0078590:CDS
TTTGGATATAGGTCTGGATG+AGG 0.595817 1_2:+56246687 None:intergenic
AAATCGGTTGAGTCCCAAGA+TGG 0.597045 1_2:-56245047 Msa0078590:CDS
CAAAGCTCAACAATGGAAGA+GGG 0.597189 1_2:-56248092 Msa0078590:CDS
GTTCTGGAATACCAAACCAT+AGG 0.598095 1_2:-56244110 Msa0078590:CDS
GTTGTATGTTGCCGTATCAA+GGG 0.599073 1_2:-56243764 Msa0078590:CDS
TTTATTAGAGAATGAAAATG+CGG 0.599656 1_2:-56249968 Msa0078590:intron
GCGCGGTGATTATGGCTATG+AGG 0.601221 1_2:-56247489 Msa0078590:CDS
ATTCTCCAACATGCTTCACA+TGG 0.601422 1_2:+56246237 None:intergenic
TACAGCGATGCTGAGATCAA+AGG 0.602525 1_2:-56248487 Msa0078590:intron
TCAGGGACAATCATTGTCAA+AGG 0.603278 1_2:-56243827 Msa0078590:CDS
AACTTGCAACTCAAATTGGA+AGG 0.603616 1_2:-56247057 Msa0078590:CDS
AATGGAAACCCTGAATCTGA+GGG 0.605911 1_2:+56243910 None:intergenic
TAAACTTTGGATCGAAGAGA+GGG 0.607050 1_2:-56248322 Msa0078590:CDS
TCTCTCCATGTGAAGCATGT+TGG 0.609352 1_2:-56246242 Msa0078590:CDS
CCAAGATATATAGCGAAGAA+GGG 0.610976 1_2:-56248749 Msa0078590:CDS
AAATCAACCAACGCTTGTAG+AGG 0.612210 1_2:+56244360 None:intergenic
AGATTCCACTTCAATAGATG+AGG 0.612719 1_2:-56246550 Msa0078590:CDS
AAGAAACATGAGGTTAATTG+GGG 0.619282 1_2:-56244526 Msa0078590:CDS
GAACCGGAAAGACCTTTATG+TGG 0.620092 1_2:-56244995 Msa0078590:CDS
TAGTCTTCATCAGATTTGCA+AGG 0.620483 1_2:+56244183 None:intergenic
AACACTAAAGGATACTGAAG+TGG 0.624643 1_2:+56247515 None:intergenic
CCTTTCAAAAGGGTTGTAAG+GGG 0.624693 1_2:-56245882 Msa0078590:CDS
AACCCTGTTCAACCATATCA+CGG 0.625916 1_2:+56247732 None:intergenic
CACAACAGAATGTGTGCATG+TGG 0.627612 1_2:+56246774 None:intergenic
CGACTACAAGTCAATCACCT+TGG 0.630312 1_2:-56244012 Msa0078590:CDS
CTACTGTAGATGAAGTTGCT+GGG 0.630641 1_2:-56247643 Msa0078590:CDS
AGGCTTCTAGATCACAGAGT+GGG 0.630873 1_2:-56245750 Msa0078590:CDS
ACTTGCTTCTCTAAGCAACT+GGG 0.631360 1_2:+56244800 None:intergenic
TGAGGAGGATATACCTTACA+GGG 0.632187 1_2:-56247471 Msa0078590:CDS
CCTCTTGCCATTCATGCATG+CGG 0.632558 1_2:+56246602 None:intergenic
GTATACAAAAGAAGGGACAA+TGG 0.633842 1_2:-56246516 Msa0078590:CDS
AATTCGGAATCATTGTTCGG+AGG 0.634391 1_2:+56248285 None:intergenic
AATGTGACTCGCAATTAGCA+AGG 0.636552 1_2:-56250131 Msa0078590:CDS
TTACAAGAAGCAGTTGAAGT+CGG 0.636894 1_2:-56247221 Msa0078590:CDS
CAAAGGAAAAGACATTGCAA+AGG 0.638638 1_2:-56248710 Msa0078590:CDS
CCAGCAACTTCATCTACAGT+AGG 0.638990 1_2:+56247644 None:intergenic
CCGCATGCATGAATGGCAAG+AGG 0.641726 1_2:-56246602 Msa0078590:CDS
CTCGGCCTGTGTTTACACAT+GGG 0.646198 1_2:-56243789 Msa0078590:CDS
AAGTTAGCATCATTAGAAAG+GGG 0.647048 1_2:-56250613 Msa0078590:CDS
AGGTTGGATTGTATCTACCT+CGG 0.647769 1_2:-56243807 Msa0078590:CDS
GCAGGAGAACAAGATGAGGA+GGG 0.648052 1_2:-56246306 Msa0078590:CDS
GCTTGTAGAGGATTGTCGCA+TGG 0.648679 1_2:+56244372 None:intergenic
AACTGCCCATGTGTAAACAC+AGG 0.655605 1_2:+56243784 None:intergenic
TTCATGATGCATGGACCATG+CGG 0.657340 1_2:-56246642 Msa0078590:CDS
TCTGGATAGCCAAAATCAAG+AGG 0.658120 1_2:+56248369 None:intergenic
CTGAGACACAAACATCAAGA+GGG 0.658631 1_2:-56250167 Msa0078590:CDS
TGTTCAACAGAATCAAGGGT+GGG 0.658944 1_2:+56244270 None:intergenic
CTTCATAATATCAAGTCTGG+TGG 0.659352 1_2:+56244602 None:intergenic
AAAATGCGGACTATGCATTG+AGG 0.659415 1_2:-56249954 Msa0078590:CDS
CCACTTAATATAAATTGAGG+CGG 0.662040 1_2:+56248069 None:intergenic
GAATTCTCTATGCTCGACGA+CGG 0.662467 1_2:-56245630 Msa0078590:CDS
ATGACAATAAACAAGAGTCA+GGG 0.666457 1_2:-56243844 Msa0078590:CDS
ATTCATCAATGGTGAAAGAG+GGG 0.668671 1_2:+56250412 None:intergenic
ACATTGATAGTAGAATTGCA+TGG 0.670515 1_2:+56243691 None:intergenic
TCTGCAGCCATAAGGTCACA+AGG 0.671275 1_2:-56244963 Msa0078590:CDS
TTACTATTGATGAGATACCA+AGG 0.672357 1_2:-56246432 Msa0078590:CDS
TCTTATATTCGGAATAACCA+GGG 0.675218 1_2:-56247272 Msa0078590:CDS
TAAAGCTGACAAGAAACATG+AGG 0.675855 1_2:-56244536 Msa0078590:CDS
ATCCGTGATATGGTTGAACA+GGG 0.676870 1_2:-56247734 Msa0078590:CDS
TTGTTCAACAGAATCAAGGG+TGG 0.678760 1_2:+56244269 None:intergenic
GAAACATCGATCAAGCAAGT+GGG 0.684939 1_2:-56244050 Msa0078590:CDS
ACACCATGATTGAAGCACAA+AGG 0.690123 1_2:-56247298 Msa0078590:CDS
GAGCATCATGGATATTCCTG+AGG 0.692364 1_2:-56244409 Msa0078590:CDS
TCACAAACTGCACACAACCA+AGG 0.692552 1_2:-56246739 Msa0078590:CDS
CGGTGATTATGGCTATGAGG+AGG 0.693633 1_2:-56247486 Msa0078590:CDS
TGTAGAGGATTGTCGCATGG+AGG 0.693664 1_2:+56244375 None:intergenic
ACCCTTACCTGTAATGACAG+TGG 0.695855 1_2:+56243972 None:intergenic
ATTCATTTACAGGTTCACCA+AGG 0.698894 1_2:-56247154 Msa0078590:CDS
GAGGCTTCTAGATCACAGAG+TGG 0.722300 1_2:-56245751 Msa0078590:CDS
GCTTCTTTATTGTTGCCCGG+AGG 0.729569 1_2:-56244906 Msa0078590:CDS
ATGGAAACCCTGAATCTGAG+GGG 0.743661 1_2:+56243911 None:intergenic
ATACAAAAGAAGGGACAATG+GGG 0.746706 1_2:-56246514 Msa0078590:CDS
ACAACAGAATGTGTGCATGT+GGG 0.750020 1_2:+56246775 None:intergenic
TCATAGCCATAATCACCGCG+CGG 0.779612 1_2:+56247491 None:intergenic
TATCCTTTAGTGTTTCCGCG+CGG 0.802128 1_2:-56247506 Msa0078590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATCTTTCTTAAAAT+CGG + chr1_2:56247377-56247396 None:intergenic 10.0%
!!! TTTAAGAAAGATAAAATTTT+TGG - chr1_2:56247379-56247398 Msa0078590:CDS 10.0%
!! CATTATTTATATATAGTTAA+AGG + chr1_2:56248818-56248837 None:intergenic 10.0%
!! CTTTAACTATATATAAATAA+TGG - chr1_2:56248816-56248835 Msa0078590:intron 10.0%
!!! TTTTATGTCATTTAAAAATT+TGG + chr1_2:56250181-56250200 None:intergenic 10.0%
!! ATATAAGATTAATTGATGTT+AGG + chr1_2:56243972-56243991 None:intergenic 15.0%
!!! TATTTTATTAGAGAATGAAA+AGG - chr1_2:56244341-56244360 Msa0078590:CDS 15.0%
!! AAAAATATGTTCACATATAT+TGG + chr1_2:56245193-56245212 None:intergenic 15.0%
!! ACATGTAAAATTAACATAAA+TGG + chr1_2:56248782-56248801 None:intergenic 15.0%
!! TTATTCTACAATAATGAAAT+CGG - chr1_2:56249249-56249268 Msa0078590:intron 15.0%
!!! CATTTTTCATTAATTTTCAA+TGG + chr1_2:56249460-56249479 None:intergenic 15.0%
!! TAAGATTTATCAATATGAAG+AGG + chr1_2:56243804-56243823 None:intergenic 20.0%
!! TTAGATACAACACATAATTA+TGG - chr1_2:56244093-56244112 Msa0078590:CDS 20.0%
!! TAATTATGGTGTAAATTCAA+TGG - chr1_2:56244107-56244126 Msa0078590:CDS 20.0%
!!! ACCTTTATCAATAAGTTTTT+GGG + chr1_2:56244244-56244263 None:intergenic 20.0%
!!! TACCTTTATCAATAAGTTTT+TGG + chr1_2:56244245-56244264 None:intergenic 20.0%
!!! TATTGATAAAGGTATGATAT+AGG - chr1_2:56244251-56244270 Msa0078590:CDS 20.0%
!! TTTATTAGAGAATGAAAATG+CGG - chr1_2:56244344-56244363 Msa0078590:CDS 20.0%
!! AGACAAAGAAAACATAAATT+TGG - chr1_2:56245782-56245801 Msa0078590:CDS 20.0%
!! TCTTATTATAAAGTAGTTGA+CGG + chr1_2:56246414-56246433 None:intergenic 20.0%
!!! TTCTAAAAGATTTGCATAAA+GGG + chr1_2:56246556-56246575 None:intergenic 20.0%
!!! TTTCTAAAAGATTTGCATAA+AGG + chr1_2:56246557-56246576 None:intergenic 20.0%
!! TTAATAATCATATACGTGAT+AGG - chr1_2:56247481-56247500 Msa0078590:CDS 20.0%
!!! ATTCTTTTAACCTTTCAAAA+GGG - chr1_2:56248420-56248439 Msa0078590:intron 20.0%
!!! TCACTAATGATTTTTTTCAT+GGG - chr1_2:56248864-56248883 Msa0078590:intron 20.0%
!! TATGAAACAATAATATGTCA+TGG + chr1_2:56248981-56249000 None:intergenic 20.0%
!!! TTCTATTTTTTGTATGGATA+TGG - chr1_2:56249292-56249311 Msa0078590:intron 20.0%
!! TTAAATGACATAAAATGTTC+TGG - chr1_2:56250186-56250205 Msa0078590:CDS 20.0%
! AAAGTTAGCATCATTAGAAA+GGG - chr1_2:56243698-56243717 Msa0078590:CDS 25.0%
! AAACATTCATTGTTACAAAG+AGG - chr1_2:56244213-56244232 Msa0078590:CDS 25.0%
! ACCCAAAAACTTATTGATAA+AGG - chr1_2:56244240-56244259 Msa0078590:CDS 25.0%
! AGGTATGATATAGGTTATAA+AGG - chr1_2:56244260-56244279 Msa0078590:CDS 25.0%
! GGTATGATATAGGTTATAAA+GGG - chr1_2:56244261-56244280 Msa0078590:CDS 25.0%
! ATCAAATTTACATGAGAGTA+CGG + chr1_2:56244315-56244334 None:intergenic 25.0%
! AAAAACATGCTCACATATAT+TGG + chr1_2:56244495-56244514 None:intergenic 25.0%
! TAACAAACTTGAATGAGTTA+AGG + chr1_2:56244599-56244618 None:intergenic 25.0%
! AAATGTAATGTTCGAAACAT+TGG + chr1_2:56244677-56244696 None:intergenic 25.0%
! CATGTTTAAACCATAATGTT+AGG + chr1_2:56244753-56244772 None:intergenic 25.0%
!!! TGTGAATCGTCTTTATTTTT+GGG + chr1_2:56244927-56244946 None:intergenic 25.0%
!!! ATGTGAATCGTCTTTATTTT+TGG + chr1_2:56244928-56244947 None:intergenic 25.0%
! ATCAAATTTACATGAGAGTA+AGG + chr1_2:56244315-56244334 None:intergenic 25.0%
! TTTATTAGAGAATGAAAAGG+CGG - chr1_2:56245042-56245061 Msa0078590:CDS 25.0%
! GGAAAAAAAAAGTTTCAGAT+GGG - chr1_2:56245083-56245102 Msa0078590:CDS 25.0%
! GAAAAAAAAAGTTTCAGATG+GGG - chr1_2:56245084-56245103 Msa0078590:CDS 25.0%
! AATATGTTCACATATATTGG+AGG + chr1_2:56245190-56245209 None:intergenic 25.0%
! TAACAAACTTGAATGAGTTA+AGG + chr1_2:56244599-56244618 None:intergenic 25.0%
! AAATGTAATGTTCGAAACAT+TGG + chr1_2:56244677-56244696 None:intergenic 25.0%
!! AGTTTTCTGTCGTAATATTA+TGG - chr1_2:56245438-56245457 Msa0078590:intron 25.0%
! ATGATGTGAATACTTTATGA+TGG - chr1_2:56245522-56245541 Msa0078590:intron 25.0%
! TTATTCAATGTATTATCAGC+AGG - chr1_2:56245756-56245775 Msa0078590:CDS 25.0%
! AATTTGGATGACTTCAAAAA+TGG - chr1_2:56245798-56245817 Msa0078590:CDS 25.0%
! TTGTTGAAAAGTTGCTTAAA+TGG - chr1_2:56245865-56245884 Msa0078590:CDS 25.0%
! TGTCCACTTAATATAAATTG+AGG + chr1_2:56246249-56246268 None:intergenic 25.0%
!! AAAAACTTTGTTTCAGATAG+AGG - chr1_2:56247283-56247302 Msa0078590:CDS 25.0%
! AAAACTCTACAAATGATATC+AGG + chr1_2:56247328-56247347 None:intergenic 25.0%
! TATAACCATATCAATTTCCT+TGG + chr1_2:56247593-56247612 None:intergenic 25.0%
!!! ATCAATAGTAATGGATTGTA+AGG + chr1_2:56247871-56247890 None:intergenic 25.0%
! GAAAAGATACTTTATTGCAT+TGG + chr1_2:56247935-56247954 None:intergenic 25.0%
!! CTTTTCAAATATGTCAACAA+AGG - chr1_2:56247949-56247968 Msa0078590:intron 25.0%
!!! TAACGCTTTATTTCATCAAT+TGG + chr1_2:56248033-56248052 None:intergenic 25.0%
! TGTTTGATATCCATGAAAAA+TGG - chr1_2:56248103-56248122 Msa0078590:CDS 25.0%
! TGATGATATTTGACAACATT+CGG + chr1_2:56248201-56248220 None:intergenic 25.0%
! TGCTAATCAAAATTATAGTG+AGG - chr1_2:56248254-56248273 Msa0078590:CDS 25.0%
! GCTAATCAAAATTATAGTGA+GGG - chr1_2:56248255-56248274 Msa0078590:CDS 25.0%
! AGTAAACTTTGATGGAAATT+CGG + chr1_2:56248298-56248317 None:intergenic 25.0%
!! GATTCTTTTAACCTTTCAAA+AGG - chr1_2:56248419-56248438 Msa0078590:intron 25.0%
! GATTGTATTAAAACTGTCAA+TGG - chr1_2:56248456-56248475 Msa0078590:intron 25.0%
! GATGATAAAGAGTTTATTGA+TGG - chr1_2:56248531-56248550 Msa0078590:CDS 25.0%
!! GTTTATTGATGGAATTTTTG+AGG - chr1_2:56248542-56248561 Msa0078590:intron 25.0%
! TAAAAATACCTGGAATATTG+AGG + chr1_2:56248710-56248729 None:intergenic 25.0%
! TGAAAAAGAGTAAAAATACC+TGG + chr1_2:56248720-56248739 None:intergenic 25.0%
!! AAATCATTAGTGACACTTTT+AGG + chr1_2:56248857-56248876 None:intergenic 25.0%
!!! GTCACTAATGATTTTTTTCA+TGG - chr1_2:56248863-56248882 Msa0078590:intron 25.0%
! TATGTATATGAACATCACTT+TGG - chr1_2:56248893-56248912 Msa0078590:intron 25.0%
! ATGTATATGAACATCACTTT+GGG - chr1_2:56248894-56248913 Msa0078590:intron 25.0%
!!! GTTTTATTTGTCAATGTTGA+AGG - chr1_2:56248955-56248974 Msa0078590:CDS 25.0%
!!! AGCAATGAATTTATTGGTTT+GGG + chr1_2:56249146-56249165 None:intergenic 25.0%
! TTCATCAGCAATGAATTTAT+TGG + chr1_2:56249152-56249171 None:intergenic 25.0%
! AAAATAGAATTGACCATCTT+GGG + chr1_2:56249281-56249300 None:intergenic 25.0%
! AAAAATAGAATTGACCATCT+TGG + chr1_2:56249282-56249301 None:intergenic 25.0%
!!! GGTCAATTCTATTTTTTGTA+TGG - chr1_2:56249286-56249305 Msa0078590:intron 25.0%
!!! TATTTTTTGTATGGATATGG+TGG - chr1_2:56249295-56249314 Msa0078590:intron 25.0%
! AGAAGCAAGTCTAATTATAT+GGG - chr1_2:56249525-56249544 Msa0078590:intron 25.0%
! CTGTTAACTCTTCTAATATT+TGG - chr1_2:56249737-56249756 Msa0078590:intron 25.0%
!! AGATTAGAGATTTTGCAAAT+TGG - chr1_2:56249833-56249852 Msa0078590:intron 25.0%
! TGTCTTCTTGAAAATTTGAA+TGG + chr1_2:56250423-56250442 None:intergenic 25.0%
!!! TCTTCATCCTTGTTGTTTTT+GGG + chr1_2:56243677-56243696 None:intergenic 30.0%
GAAAGTTAGCATCATTAGAA+AGG - chr1_2:56243697-56243716 Msa0078590:CDS 30.0%
AAGTTAGCATCATTAGAAAG+GGG - chr1_2:56243699-56243718 Msa0078590:CDS 30.0%
ATCTTATTGCAATTCATTGC+AGG - chr1_2:56243818-56243837 Msa0078590:CDS 30.0%
ATCTTCTAACCATTCATCAA+TGG + chr1_2:56243914-56243933 None:intergenic 30.0%
GAGCATAAAGAAATAAGCAA+AGG + chr1_2:56244045-56244064 None:intergenic 30.0%
! TTTATGCTCTTTTCTGTTAG+TGG - chr1_2:56244056-56244075 Msa0078590:CDS 30.0%
GGAAAAAACAAGTTTCAGAT+GGG - chr1_2:56244385-56244404 Msa0078590:CDS 30.0%
GAAAAAACAAGTTTCAGATG+GGG - chr1_2:56244386-56244405 Msa0078590:CDS 30.0%
GATGTTATACTTGTTTGAGA+AGG + chr1_2:56244459-56244478 None:intergenic 30.0%
!! CTCATTCAAGTTTGTTAAAG+AGG - chr1_2:56244602-56244621 Msa0078590:CDS 30.0%
ATTACATTTGCACATTCTTC+AGG - chr1_2:56244688-56244707 Msa0078590:CDS 30.0%
! AGTTTTCTGTCCTAACATTA+TGG - chr1_2:56244740-56244759 Msa0078590:CDS 30.0%
ATGATGTGAATACTTGATGA+TGG - chr1_2:56244824-56244843 Msa0078590:CDS 30.0%
CGGAAAAAAAAAGTTTCAGA+TGG - chr1_2:56245082-56245101 Msa0078590:CDS 30.0%
!! AATGGTGTGTCATTTATAAC+GGG + chr1_2:56245130-56245149 None:intergenic 30.0%
!! GAATGGTGTGTCATTTATAA+CGG + chr1_2:56245131-56245150 None:intergenic 30.0%
GATGTTATACTTGTTTGAGA+AGG + chr1_2:56244459-56244478 None:intergenic 30.0%
!! CTCATTCAAGTTTGTTAAAG+AGG - chr1_2:56244602-56244621 Msa0078590:CDS 30.0%
ATGTTCGAAACATTGGATAA+TGG + chr1_2:56244670-56244689 None:intergenic 30.0%
ATTACATTTGCACATTCTTC+AGG - chr1_2:56244688-56244707 Msa0078590:CDS 30.0%
!!! TTTGAAGCTGTTTTTGTTGA+AGG - chr1_2:56245647-56245666 Msa0078590:CDS 30.0%
TCACATATGAAACAAATCAC+AGG - chr1_2:56245919-56245938 Msa0078590:CDS 30.0%
GAAAATTCGGAATCATTGTT+CGG + chr1_2:56246033-56246052 None:intergenic 30.0%
TTGACAGCATAAGGAAAATT+CGG + chr1_2:56246046-56246065 None:intergenic 30.0%
! ATTTTCCTTATGCTGTCAAA+AGG - chr1_2:56246047-56246066 Msa0078590:CDS 30.0%
! TTTTCCTTATGCTGTCAAAA+GGG - chr1_2:56246048-56246067 Msa0078590:CDS 30.0%
!!! AATGATAACAGTAGTTTTGG+AGG + chr1_2:56246102-56246121 None:intergenic 30.0%
! AGCAATGATAACAGTAGTTT+TGG + chr1_2:56246105-56246124 None:intergenic 30.0%
CCACTTAATATAAATTGAGG+CGG + chr1_2:56246246-56246265 None:intergenic 30.0%
TAAGTGGACAGAATTATCAT+AGG - chr1_2:56246259-56246278 Msa0078590:CDS 30.0%
TGAAGACCTGAAAATAATGT+TGG - chr1_2:56246520-56246539 Msa0078590:CDS 30.0%
!! TTTTAGAAAGATCCGTGATA+TGG - chr1_2:56246568-56246587 Msa0078590:CDS 30.0%
ATTAAGGTTGTTCAGGAAAA+GGG - chr1_2:56246619-56246638 Msa0078590:CDS 30.0%
AATAGGTGATTATGATGAGA+CGG - chr1_2:56246697-56246716 Msa0078590:CDS 30.0%
AGAAGGAAGAGATATTATAG+TGG - chr1_2:56246721-56246740 Msa0078590:CDS 30.0%
!! GATATTATAGTGGATGATGT+AGG - chr1_2:56246731-56246750 Msa0078590:CDS 30.0%
GATGAAGAAAAAAAGTCAAG+AGG - chr1_2:56246872-56246891 Msa0078590:intron 30.0%
AAAAAAAGTCAAGAGGTTCA+AGG - chr1_2:56246879-56246898 Msa0078590:intron 30.0%
AAAAAAGTCAAGAGGTTCAA+GGG - chr1_2:56246880-56246899 Msa0078590:intron 30.0%
!!! TTGCTTTTAGAATTCAAGAG+AGG - chr1_2:56246927-56246946 Msa0078590:CDS 30.0%
!!! TGCTTTTAGAATTCAAGAGA+GGG - chr1_2:56246928-56246947 Msa0078590:CDS 30.0%
CACAAAGGCTATCTTATATT+CGG - chr1_2:56247029-56247048 Msa0078590:CDS 30.0%
ATCTTATATTCGGAATAACC+AGG - chr1_2:56247039-56247058 Msa0078590:CDS 30.0%
TCTTATATTCGGAATAACCA+GGG - chr1_2:56247040-56247059 Msa0078590:CDS 30.0%
ATACTTCCAGATTCATTTAC+AGG - chr1_2:56247148-56247167 Msa0078590:CDS 30.0%
CAATTATTGAACATGTACCT+TGG + chr1_2:56247178-56247197 None:intergenic 30.0%
CAATAATTGTCAAGATGCAA+TGG - chr1_2:56247189-56247208 Msa0078590:CDS 30.0%
! CAATAACTTGCAACTCAAAT+TGG - chr1_2:56247251-56247270 Msa0078590:CDS 30.0%
! TTTTCCGGTATACAAAAGAA+GGG - chr1_2:56247789-56247808 Msa0078590:CDS 30.0%
TATACAAAAGAAGGGACAAT+GGG - chr1_2:56247797-56247816 Msa0078590:CDS 30.0%
TGGTATCTCATCAATAGTAA+TGG + chr1_2:56247880-56247899 None:intergenic 30.0%
TTACTATTGATGAGATACCA+AGG - chr1_2:56247880-56247899 Msa0078590:intron 30.0%
!!! CTGCTTTCTTTTTAATTTGG+AGG + chr1_2:56247990-56248009 None:intergenic 30.0%
CTCCAAATTAAAAAGAAAGC+AGG - chr1_2:56247988-56248007 Msa0078590:CDS 30.0%
!! CTCCTGCTTTCTTTTTAATT+TGG + chr1_2:56247993-56248012 None:intergenic 30.0%
!! AGATTAGCTTTACATCTTGA+GGG - chr1_2:56248138-56248157 Msa0078590:CDS 30.0%
!! ATCTGAAAACCATTTTTCCT+TGG + chr1_2:56248348-56248367 None:intergenic 30.0%
! AGGAAAAATGGTTTTCAGAT+CGG - chr1_2:56248348-56248367 Msa0078590:CDS 30.0%
ATAATGTATGGAAAGCTACT+TGG - chr1_2:56248643-56248662 Msa0078590:CDS 30.0%
TGTATATGAACATCACTTTG+GGG - chr1_2:56248895-56248914 Msa0078590:intron 30.0%
TACTAACATCATAGCATGTT+TGG - chr1_2:56248923-56248942 Msa0078590:intron 30.0%
! AGATTTTGCAAATCACTATC+TGG + chr1_2:56249028-56249047 None:intergenic 30.0%
GAAAAGTTGTTAATGTGCAA+TGG - chr1_2:56249064-56249083 Msa0078590:intron 30.0%
! CAGCAATGAATTTATTGGTT+TGG + chr1_2:56249147-56249166 None:intergenic 30.0%
AGATAATGTCTTCCACATAA+AGG + chr1_2:56249332-56249351 None:intergenic 30.0%
GAGAAGCAAGTCTAATTATA+TGG - chr1_2:56249524-56249543 Msa0078590:intron 30.0%
AAGTCTAATTATATGGGATG+AGG - chr1_2:56249531-56249550 Msa0078590:intron 30.0%
! AAGAACTTGAACAAACCTTT+TGG - chr1_2:56249628-56249647 Msa0078590:CDS 30.0%
ACAAGAAACATGAGGTTAAT+TGG - chr1_2:56249784-56249803 Msa0078590:intron 30.0%
CAAGAAACATGAGGTTAATT+GGG - chr1_2:56249785-56249804 Msa0078590:intron 30.0%
AAGAAACATGAGGTTAATTG+GGG - chr1_2:56249786-56249805 Msa0078590:intron 30.0%
!! GCAAATTGGATTTTGAAGAT+TGG - chr1_2:56249847-56249866 Msa0078590:intron 30.0%
!! TGGATTTTGAAGATTGGAAA+TGG - chr1_2:56249853-56249872 Msa0078590:intron 30.0%
! TTGATAACATCGACAATCAA+AGG - chr1_2:56249992-56250011 Msa0078590:intron 30.0%
! TATGTTCTTTCGTTGATTGA+AGG - chr1_2:56250075-56250094 Msa0078590:CDS 30.0%
! TCAGAACTTAGATACTCTTT+TGG + chr1_2:56250105-56250124 None:intergenic 30.0%
GATGAAGACTATGATATTCA+AGG - chr1_2:56250141-56250160 Msa0078590:CDS 30.0%
ACTATGATATTCAAGGAGAT+TGG - chr1_2:56250148-56250167 Msa0078590:CDS 30.0%
TTCAAAATCAACCTATGGTT+TGG + chr1_2:56250216-56250235 None:intergenic 30.0%
ATGTTTCTCAACAACATGAT+CGG + chr1_2:56250249-56250268 None:intergenic 30.0%
ATAGCAAAGCACAATGAAAT+GGG + chr1_2:56250450-56250469 None:intergenic 30.0%
TATGACAATAAACAAGAGTC+AGG - chr1_2:56250467-56250486 Msa0078590:CDS 30.0%
ATGACAATAAACAAGAGTCA+GGG - chr1_2:56250468-56250487 Msa0078590:CDS 30.0%
! AGGGTTGAAAATGCTAATTT+TGG - chr1_2:56250584-56250603 Msa0078590:intron 30.0%
! ATGCTAATTTTGGATGATGA+TGG - chr1_2:56250594-56250613 Msa0078590:CDS 30.0%
! ACATTGATAGTAGAATTGCA+TGG + chr1_2:56250624-56250643 None:intergenic 30.0%
!!! TATCAATGTTGTTTTTCCAG+AGG - chr1_2:56250635-56250654 Msa0078590:CDS 30.0%
TACAGATTATCAAAAACCTC+TGG + chr1_2:56250654-56250673 None:intergenic 30.0%
!!! CTTGTTGTTTTTGGGTCATT+GGG + chr1_2:56243669-56243688 None:intergenic 35.0%
!!! CTCTTCATCCTTGTTGTTTT+TGG + chr1_2:56243678-56243697 None:intergenic 35.0%
ACAAAAAGACCCAATGACAA+AGG - chr1_2:56243726-56243745 Msa0078590:CDS 35.0%
GCTGAAATACCTTTGTCATT+GGG + chr1_2:56243738-56243757 None:intergenic 35.0%
TGCTGAAATACCTTTGTCAT+TGG + chr1_2:56243739-56243758 None:intergenic 35.0%
ATTCATCAATGGTGAAAGAG+GGG + chr1_2:56243903-56243922 None:intergenic 35.0%
CATTCATCAATGGTGAAAGA+GGG + chr1_2:56243904-56243923 None:intergenic 35.0%
TTTCTGTTAGTGGTCAATCA+AGG - chr1_2:56244066-56244085 Msa0078590:CDS 35.0%
CGGAAAAAACAAGTTTCAGA+TGG - chr1_2:56244384-56244403 Msa0078590:CDS 35.0%
!! AATGGAGTGCCATTTATAAC+GGG + chr1_2:56244432-56244451 None:intergenic 35.0%
!! GAATGGAGTGCCATTTATAA+CGG + chr1_2:56244433-56244452 None:intergenic 35.0%
CTTGTTTGAGAAGGAATGAA+TGG + chr1_2:56244450-56244469 None:intergenic 35.0%
AACATGCTCACATATATTGG+AGG + chr1_2:56244492-56244511 None:intergenic 35.0%
! GATAATCGACTTCTTTGTTC+AGG + chr1_2:56244655-56244674 None:intergenic 35.0%
TCCAAGAAATATAGCGAAGA+AGG - chr1_2:56244864-56244883 Msa0078590:CDS 35.0%
CCAAGAAATATAGCGAAGAA+GGG - chr1_2:56244865-56244884 Msa0078590:CDS 35.0%
GTCAAAAGACTCGAATTCAA+AGG - chr1_2:56244887-56244906 Msa0078590:CDS 35.0%
TTACATGAGAGTAAGGTAGT+TGG + chr1_2:56245006-56245025 None:intergenic 35.0%
!! TCATTTATAACGGGTGGATT+AGG + chr1_2:56245121-56245140 None:intergenic 35.0%
CTTGTTTGAGAAGGAATGAA+TGG + chr1_2:56244450-56244469 None:intergenic 35.0%
!! GATAATGGACTTCTTTGTTC+AGG + chr1_2:56245353-56245372 None:intergenic 35.0%
TCCAAGATATATAGCGAAGA+AGG - chr1_2:56245562-56245581 Msa0078590:intron 35.0%
CCAAGATATATAGCGAAGAA+GGG - chr1_2:56245563-56245582 Msa0078590:intron 35.0%
GTCAAATGACTCGAATTCAA+AGG - chr1_2:56245585-56245604 Msa0078590:intron 35.0%
CAAAGGAAAAGACATTGCAA+AGG - chr1_2:56244904-56244923 Msa0078590:CDS 35.0%
TTCAATGTATTATCAGCAGG+TGG - chr1_2:56245759-56245778 Msa0078590:CDS 35.0%
TATGTGACGTTAGATGTGTA+TGG + chr1_2:56245906-56245925 None:intergenic 35.0%
AATGGTGCAAAGCTAAACTT+TGG - chr1_2:56245977-56245996 Msa0078590:CDS 35.0%
TAAACTTTGGATCGAAGAGA+GGG - chr1_2:56245990-56246009 Msa0078590:CDS 35.0%
! ATATCCCTTTTGACAGCATA+AGG + chr1_2:56246055-56246074 None:intergenic 35.0%
! TGTTGATATCCCTTTTGTAG+AGG - chr1_2:56246074-56246093 Msa0078590:CDS 35.0%
CTACTGTTATCATTGCTTGA+TGG - chr1_2:56246108-56246127 Msa0078590:CDS 35.0%
TATATGCTCTGATGTTCTCT+AGG + chr1_2:56246158-56246177 None:intergenic 35.0%
! GTGTTTTCAAAGCTCAACAA+TGG - chr1_2:56246213-56246232 Msa0078590:CDS 35.0%
CCGCCTCAATTTATATTAAG+TGG - chr1_2:56246243-56246262 Msa0078590:CDS 35.0%
GGACAGAATTATCATAGGAT+TGG - chr1_2:56246264-56246283 Msa0078590:CDS 35.0%
ATGTATAGTTGGGCAAACTT+TGG + chr1_2:56246318-56246337 None:intergenic 35.0%
AGTGTCGTAGATGTATAGTT+GGG + chr1_2:56246328-56246347 None:intergenic 35.0%
!!! TTTTTTCGCAGTTCAAGTGA+TGG - chr1_2:56246470-56246489 Msa0078590:CDS 35.0%
! GGATGGATTTGATCTTTCAT+TGG - chr1_2:56246496-56246515 Msa0078590:CDS 35.0%
! ACTCGTCCAACATTATTTTC+AGG + chr1_2:56246529-56246548 None:intergenic 35.0%
AACAACCTTAATGCCATCTT+TGG + chr1_2:56246611-56246630 None:intergenic 35.0%
CATTAAGGTTGTTCAGGAAA+AGG - chr1_2:56246618-56246637 Msa0078590:CDS 35.0%
TACTGAAGTGGCATGTATAA+TGG + chr1_2:56246788-56246807 None:intergenic 35.0%
AACACTAAAGGATACTGAAG+TGG + chr1_2:56246800-56246819 None:intergenic 35.0%
TCATCTTCAAATTCCCTGTA+AGG + chr1_2:56246857-56246876 None:intergenic 35.0%
TTGTAACCCACTCAACAAAT+CGG + chr1_2:56247077-56247096 None:intergenic 35.0%
TTACAAGAAGCAGTTGAAGT+CGG - chr1_2:56247091-56247110 Msa0078590:CDS 35.0%
ATTCATTTACAGGTTCACCA+AGG - chr1_2:56247158-56247177 Msa0078590:CDS 35.0%
ATGGCAATCTGTAAGAGATT+CGG - chr1_2:56247208-56247227 Msa0078590:CDS 35.0%
TTATTGTGATGAACAGATCC+GGG + chr1_2:56247237-56247256 None:intergenic 35.0%
GTTATTGTGATGAACAGATC+CGG + chr1_2:56247238-56247257 None:intergenic 35.0%
AACTTGCAACTCAAATTGGA+AGG - chr1_2:56247255-56247274 Msa0078590:CDS 35.0%
TCTTAAAATCGGCCATCATT+TGG + chr1_2:56247366-56247385 None:intergenic 35.0%
CACAACCAAGGAAATTGATA+TGG - chr1_2:56247585-56247604 Msa0078590:CDS 35.0%
CCAAATGCAACTTTGGATAT+AGG + chr1_2:56247639-56247658 None:intergenic 35.0%
CCTATATCCAAAGTTGCATT+TGG - chr1_2:56247636-56247655 Msa0078590:CDS 35.0%
GTTTCAACATTCATGATGCA+TGG - chr1_2:56247661-56247680 Msa0078590:CDS 35.0%
GTGGAATCTATGAACTTCTT+TGG + chr1_2:56247751-56247770 None:intergenic 35.0%
AGATTCCACTTCAATAGATG+AGG - chr1_2:56247762-56247781 Msa0078590:CDS 35.0%
! AATAGATGAGGATGGTTTTC+CGG - chr1_2:56247774-56247793 Msa0078590:CDS 35.0%
! GTTTTCCGGTATACAAAAGA+AGG - chr1_2:56247788-56247807 Msa0078590:CDS 35.0%
! TTGTCCCTTCTTTTGTATAC+CGG + chr1_2:56247796-56247815 None:intergenic 35.0%
GTATACAAAAGAAGGGACAA+TGG - chr1_2:56247796-56247815 Msa0078590:CDS 35.0%
ATACAAAAGAAGGGACAATG+GGG - chr1_2:56247798-56247817 Msa0078590:CDS 35.0%
GGAAAAAAATGGTACTCAGT+TGG - chr1_2:56247828-56247847 Msa0078590:CDS 35.0%
AAAGCTAATCTCAAAACAGC+AGG + chr1_2:56248129-56248148 None:intergenic 35.0%
!! GAGATTAGCTTTACATCTTG+AGG - chr1_2:56248137-56248156 Msa0078590:CDS 35.0%
TCAACAATGTGTTAGGTTCA+AGG - chr1_2:56248161-56248180 Msa0078590:CDS 35.0%
TTCCTACAATGTTTCTTGCT+TGG - chr1_2:56248226-56248245 Msa0078590:CDS 35.0%
AACCAAGCAAGAAACATTGT+AGG + chr1_2:56248231-56248250 None:intergenic 35.0%
ATGGAAATTCGGCATAAGTA+AGG + chr1_2:56248287-56248306 None:intergenic 35.0%
GGCAGATAAGTAAACTTTGA+TGG + chr1_2:56248306-56248325 None:intergenic 35.0%
TTACTTATCTGCCTGACAAA+AGG - chr1_2:56248313-56248332 Msa0078590:CDS 35.0%
! GGAAAAATGGTTTTCAGATC+GGG - chr1_2:56248349-56248368 Msa0078590:CDS 35.0%
CAGGTGAACTTTACTATATG+AGG - chr1_2:56248397-56248416 Msa0078590:intron 35.0%
AACCTTTCAAAAGGGTTGTA+AGG - chr1_2:56248428-56248447 Msa0078590:intron 35.0%
ACCTTTCAAAAGGGTTGTAA+GGG - chr1_2:56248429-56248448 Msa0078590:intron 35.0%
GTAGCTTTCCATACATTATC+AGG + chr1_2:56248642-56248661 None:intergenic 35.0%
GAAAGCTACTTGGAAGTTAT+TGG - chr1_2:56248653-56248672 Msa0078590:CDS 35.0%
CCATTAACTCTCCAAAAACT+GGG + chr1_2:56249123-56249142 None:intergenic 35.0%
! GTAATTAATGTTGCTTCGAG+CGG - chr1_2:56249379-56249398 Msa0078590:intron 35.0%
ATTGCTTCTTTATTGTTGCC+CGG - chr1_2:56249403-56249422 Msa0078590:intron 35.0%
! AACTTGAACAAACCTTTTGG+AGG - chr1_2:56249631-56249650 Msa0078590:CDS 35.0%
CTTCATAATATCAAGTCTGG+TGG + chr1_2:56249713-56249732 None:intergenic 35.0%
CACCAGACTTGATATTATGA+AGG - chr1_2:56249711-56249730 Msa0078590:CDS 35.0%
TGCCTTCATAATATCAAGTC+TGG + chr1_2:56249716-56249735 None:intergenic 35.0%
TAAAGCTGACAAGAAACATG+AGG - chr1_2:56249776-56249795 Msa0078590:intron 35.0%
GATATGATTGCAGATGAAGA+TGG - chr1_2:56249877-56249896 Msa0078590:CDS 35.0%
!! TTGGTTGATTTTGTCTATCC+AGG - chr1_2:56249964-56249983 Msa0078590:intron 35.0%
TCGATGTTATCAACAATACC+TGG + chr1_2:56249985-56250004 None:intergenic 35.0%
! GACTTGTTCAACAGAATCAA+GGG + chr1_2:56250049-56250068 None:intergenic 35.0%
!! TGACTTGTTCAACAGAATCA+AGG + chr1_2:56250050-56250069 None:intergenic 35.0%
TAGTCTTCATCAGATTTGCA+AGG + chr1_2:56250132-56250151 None:intergenic 35.0%
CAGTCTTCAAAATCAACCTA+TGG + chr1_2:56250221-56250240 None:intergenic 35.0%
!!! CATAGGTTGATTTTGAAGAC+TGG - chr1_2:56250219-56250238 Msa0078590:CDS 35.0%
!! CAGTTATGATGTTTTTGCCA+AGG + chr1_2:56250320-56250339 None:intergenic 35.0%
!! TCATTACAGGTAAGGGTATT+GGG - chr1_2:56250346-56250365 Msa0078590:intron 35.0%
CATAGCAAAGCACAATGAAA+TGG + chr1_2:56250451-56250470 None:intergenic 35.0%
! TAGCATTTTCAACCCTTTCT+TGG + chr1_2:56250580-56250599 None:intergenic 35.0%
!!! CCTTGTTGTTTTTGGGTCAT+TGG + chr1_2:56243670-56243689 None:intergenic 40.0%
CCAATGACCCAAAAACAACA+AGG - chr1_2:56243667-56243686 Msa0078590:CDS 40.0%
ATAGCATTTGTCTGTCACTC+AGG + chr1_2:56243862-56243881 None:intergenic 40.0%
CCATTCATCAATGGTGAAAG+AGG + chr1_2:56243905-56243924 None:intergenic 40.0%
CCTCTTTCACCATTGATGAA+TGG - chr1_2:56243902-56243921 Msa0078590:CDS 40.0%
! TCTGAGACACAAACATCAAG+AGG - chr1_2:56244144-56244163 Msa0078590:CDS 40.0%
CTGAGACACAAACATCAAGA+GGG - chr1_2:56244145-56244164 Msa0078590:CDS 40.0%
AATGTGACTCGCAATTAGCA+AGG - chr1_2:56244181-56244200 Msa0078590:CDS 40.0%
! TTACATGAGAGTACGGTAGT+TGG + chr1_2:56244308-56244327 None:intergenic 40.0%
! AAAATGCGGACTATGCATTG+AGG - chr1_2:56244358-56244377 Msa0078590:CDS 40.0%
!! CCATTTATAACGGGTGGATT+AGG + chr1_2:56244423-56244442 None:intergenic 40.0%
CCTAATCCACCCGTTATAAA+TGG - chr1_2:56244420-56244439 Msa0078590:CDS 40.0%
! AATCGACTTCTTTGTTCAGG+TGG + chr1_2:56244652-56244671 None:intergenic 40.0%
CCCTTCTTCGCTATATTTCT+TGG + chr1_2:56244868-56244887 None:intergenic 40.0%
! AATGGACTTCTTTGTTCAGG+TGG + chr1_2:56245350-56245369 None:intergenic 40.0%
CCCTTCTTCGCTATATATCT+TGG + chr1_2:56245566-56245585 None:intergenic 40.0%
CAAAATCCAAACGCGCAATA+GGG + chr1_2:56245631-56245650 None:intergenic 40.0%
TCAAAATCCAAACGCGCAAT+AGG + chr1_2:56245632-56245651 None:intergenic 40.0%
!!! GAAGCTGTTTTTGTTGAAGG+CGG - chr1_2:56245650-56245669 Msa0078590:CDS 40.0%
TCATCGAACTCAGCAAAAGA+TGG - chr1_2:56245677-56245696 Msa0078590:CDS 40.0%
! ATCACAGGACCTCTTGATTT+TGG - chr1_2:56245934-56245953 Msa0078590:CDS 40.0%
TCTGGATAGCCAAAATCAAG+AGG + chr1_2:56245946-56245965 None:intergenic 40.0%
ATCCAGACTTCGTATGCAAA+TGG - chr1_2:56245959-56245978 Msa0078590:CDS 40.0%
CTAAACTTTGGATCGAAGAG+AGG - chr1_2:56245989-56246008 Msa0078590:CDS 40.0%
AATTCGGAATCATTGTTCGG+AGG + chr1_2:56246030-56246049 None:intergenic 40.0%
TTGGAGGTTCCTCTACAAAA+GGG + chr1_2:56246086-56246105 None:intergenic 40.0%
TTTGGAGGTTCCTCTACAAA+AGG + chr1_2:56246087-56246106 None:intergenic 40.0%
ATGTTTGCCTTTACATCCCT+TGG - chr1_2:56246183-56246202 Msa0078590:CDS 40.0%
TGAAAACACTTTGCCTCCAA+GGG + chr1_2:56246202-56246221 None:intergenic 40.0%
TTGAAAACACTTTGCCTCCA+AGG + chr1_2:56246203-56246222 None:intergenic 40.0%
TCAAAGCTCAACAATGGAAG+AGG - chr1_2:56246219-56246238 Msa0078590:CDS 40.0%
CAAAGCTCAACAATGGAAGA+GGG - chr1_2:56246220-56246239 Msa0078590:CDS 40.0%
! GAGTGTCGTAGATGTATAGT+TGG + chr1_2:56246329-56246348 None:intergenic 40.0%
ATCCGTGATATGGTTGAACA+GGG - chr1_2:56246578-56246597 Msa0078590:CDS 40.0%
AACCCTGTTCAACCATATCA+CGG + chr1_2:56246583-56246602 None:intergenic 40.0%
AACCTTAATGCCATCTTTGG+AGG + chr1_2:56246608-56246627 None:intergenic 40.0%
AGATGGCATTAAGGTTGTTC+AGG - chr1_2:56246612-56246631 Msa0078590:CDS 40.0%
GTTGTTCAGGAAAAGGGAAA+AGG - chr1_2:56246625-56246644 Msa0078590:CDS 40.0%
CTACTGTAGATGAAGTTGCT+GGG - chr1_2:56246669-56246688 Msa0078590:CDS 40.0%
!! GAAGTTGCTGGGTTGATAAT+AGG - chr1_2:56246680-56246699 Msa0078590:CDS 40.0%
GATTATGATGAGACGGAAGA+AGG - chr1_2:56246704-56246723 Msa0078590:CDS 40.0%
ATGAGGAGGATATACCTTAC+AGG - chr1_2:56246840-56246859 Msa0078590:intron 40.0%
TGAGGAGGATATACCTTACA+GGG - chr1_2:56246841-56246860 Msa0078590:intron 40.0%
ACACCATGATTGAAGCACAA+AGG - chr1_2:56247014-56247033 Msa0078590:CDS 40.0%
TAGCCTTTGTGCTTCAATCA+TGG + chr1_2:56247020-56247039 None:intergenic 40.0%
AATCGGAACGAATAATTCCC+TGG + chr1_2:56247060-56247079 None:intergenic 40.0%
!! ATTCGTTCCGATTTGTTGAG+TGG - chr1_2:56247067-56247086 Msa0078590:CDS 40.0%
!! TTCGTTCCGATTTGTTGAGT+GGG - chr1_2:56247068-56247087 Msa0078590:CDS 40.0%
GGTGAACCTGTAAATGAATC+TGG + chr1_2:56247157-56247176 None:intergenic 40.0%
GATGAAGCTTGACCAAATGA+TGG - chr1_2:56247351-56247370 Msa0078590:CDS 40.0%
ACCGTTGAGTTTCAAAAGAG+AGG - chr1_2:56247511-56247530 Msa0078590:CDS 40.0%
!!! CCCTCTCTTTTGAAACTCAA+CGG + chr1_2:56247515-56247534 None:intergenic 40.0%
CCGTTGAGTTTCAAAAGAGA+GGG - chr1_2:56247512-56247531 Msa0078590:CDS 40.0%
ACAACAGAATGTGTGCATGT+GGG + chr1_2:56247540-56247559 None:intergenic 40.0%
TTTGGATATAGGTCTGGATG+AGG + chr1_2:56247628-56247647 None:intergenic 40.0%
TGCAACTTTGGATATAGGTC+TGG + chr1_2:56247634-56247653 None:intergenic 40.0%
CATGCGGAATTCAAATTTGC+TGG + chr1_2:56247697-56247716 None:intergenic 40.0%
TTGAATTCCGCATGCATGAA+TGG - chr1_2:56247703-56247722 Msa0078590:CDS 40.0%
TCCACTTCAATAGATGAGGA+TGG - chr1_2:56247766-56247785 Msa0078590:CDS 40.0%
ACCATCCTCATCTATTGAAG+TGG + chr1_2:56247770-56247789 None:intergenic 40.0%
GGGGTTTGTGTGGAAAAAAA+TGG - chr1_2:56247817-56247836 Msa0078590:CDS 40.0%
ATGGTACTCAGTTGGACAAT+AGG - chr1_2:56247836-56247855 Msa0078590:intron 40.0%
ACTCAGTGTTAACATGTCCT+TGG + chr1_2:56247900-56247919 None:intergenic 40.0%
! ATTTGGAGGTTTGCTCTATC+AGG + chr1_2:56247976-56247995 None:intergenic 40.0%
ATTCTCCAACATGCTTCACA+TGG + chr1_2:56248078-56248097 None:intergenic 40.0%
!!! AAACAGCAGGCCATTTTTCA+TGG + chr1_2:56248116-56248135 None:intergenic 40.0%
TTGAGGGTCAACAATGTGTT+AGG - chr1_2:56248154-56248173 Msa0078590:CDS 40.0%
ATGTGGCATCCAAGGAAAAA+TGG - chr1_2:56248336-56248355 Msa0078590:CDS 40.0%
! AAAATGGTTTTCAGATCGGG+AGG - chr1_2:56248352-56248371 Msa0078590:CDS 40.0%
AGGTTGTCTTACATTCCTGT+AGG - chr1_2:56248372-56248391 Msa0078590:CDS 40.0%
CCTTTCAAAAGGGTTGTAAG+GGG - chr1_2:56248430-56248449 Msa0078590:intron 40.0%
CAAGATGCATGTTATGCTCT+TGG - chr1_2:56248498-56248517 Msa0078590:CDS 40.0%
! TGCACAAGCCTGATAATGTA+TGG - chr1_2:56248631-56248650 Msa0078590:intron 40.0%
ACTTGGAAGTTATTGGCAGA+TGG - chr1_2:56248660-56248679 Msa0078590:CDS 40.0%
AACTCTCCAAAAACTGGGTA+AGG + chr1_2:56249118-56249137 None:intergenic 40.0%
!! CCCAGTTTTTGGAGAGTTAA+TGG - chr1_2:56249120-56249139 Msa0078590:intron 40.0%
GCCATTAACTCTCCAAAAAC+TGG + chr1_2:56249124-56249143 None:intergenic 40.0%
! TTGTATGGATATGGTGGAAC+CGG - chr1_2:56249301-56249320 Msa0078590:intron 40.0%
CTTCCACATAAAGGTCTTTC+CGG + chr1_2:56249323-56249342 None:intergenic 40.0%
AGACATTATCTGCAGCCATA+AGG - chr1_2:56249341-56249360 Msa0078590:intron 40.0%
AATCTTGCCTTGTGACCTTA+TGG + chr1_2:56249359-56249378 None:intergenic 40.0%
ACTTGCTTCTCTAAGCAACT+GGG + chr1_2:56249515-56249534 None:intergenic 40.0%
TCATTATATCGCGCATCGTT+CGG + chr1_2:56249594-56249613 None:intergenic 40.0%
!! GAACAAACCTTTTGGAGGAA+AGG - chr1_2:56249636-56249655 Msa0078590:CDS 40.0%
ATGACAACCTTTCCTCCAAA+AGG + chr1_2:56249646-56249665 None:intergenic 40.0%
!! TGGAGGAAAGGTTGTCATTT+TGG - chr1_2:56249648-56249667 Msa0078590:CDS 40.0%
!!! GGAGGAAAGGTTGTCATTTT+GGG - chr1_2:56249649-56249668 Msa0078590:CDS 40.0%
!!! GAGGAAAGGTTGTCATTTTG+GGG - chr1_2:56249650-56249669 Msa0078590:CDS 40.0%
!!! AGGAAAGGTTGTCATTTTGG+GGG - chr1_2:56249651-56249670 Msa0078590:CDS 40.0%
! TCTGGTGGCTTTTCTAATGA+CGG + chr1_2:56249698-56249717 None:intergenic 40.0%
TAATATTTGGCGTAGCTGCA+AGG - chr1_2:56249750-56249769 Msa0078590:intron 40.0%
AAATCAACCAACGCTTGTAG+AGG + chr1_2:56249955-56249974 None:intergenic 40.0%
TGTTCAACAGAATCAAGGGT+GGG + chr1_2:56250045-56250064 None:intergenic 40.0%
TTGTTCAACAGAATCAAGGG+TGG + chr1_2:56250046-56250065 None:intergenic 40.0%
!! GTTCTGGAATACCAAACCAT+AGG - chr1_2:56250202-56250221 Msa0078590:CDS 40.0%
AGAAACATCGATCAAGCAAG+TGG - chr1_2:56250261-56250280 Msa0078590:intron 40.0%
GAAACATCGATCAAGCAAGT+GGG - chr1_2:56250262-56250281 Msa0078590:intron 40.0%
!! CAAGCAAGTGGGTTATGTAA+TGG - chr1_2:56250273-56250292 Msa0078590:intron 40.0%
ATAACTGCCACTGTCATTAC+AGG - chr1_2:56250333-56250352 Msa0078590:intron 40.0%
! GTCATTACAGGTAAGGGTAT+TGG - chr1_2:56250345-56250364 Msa0078590:intron 40.0%
!! AAAGGTATTGATCCCAAGGA+TGG - chr1_2:56250371-56250390 Msa0078590:intron 40.0%
! ATTGATCCCAAGGATGGATT+TGG - chr1_2:56250377-56250396 Msa0078590:intron 40.0%
AATGGAAACCCTGAATCTGA+GGG + chr1_2:56250405-56250424 None:intergenic 40.0%
TCAGGGACAATCATTGTCAA+AGG - chr1_2:56250485-56250504 Msa0078590:intron 40.0%
GGACAATCATTGTCAAAGGT+TGG - chr1_2:56250489-56250508 Msa0078590:intron 40.0%
AGGTTGGATTGTATCTACCT+CGG - chr1_2:56250505-56250524 Msa0078590:intron 40.0%
AGTTGTATGTTGCCGTATCA+AGG - chr1_2:56250547-56250566 Msa0078590:intron 40.0%
GTTGTATGTTGCCGTATCAA+GGG - chr1_2:56250548-56250567 Msa0078590:intron 40.0%
! CTTGGTAGTTACCCTTGATA+CGG + chr1_2:56250562-56250581 None:intergenic 40.0%
TCAAGGGTAACTACCAAGAA+AGG - chr1_2:56250564-56250583 Msa0078590:intron 40.0%
CAAGGGTAACTACCAAGAAA+GGG - chr1_2:56250565-56250584 Msa0078590:intron 40.0%
AACATCAAGAGGGCTATCCA+TGG - chr1_2:56244155-56244174 Msa0078590:CDS 45.0%
TTGCGAGTCACATTGTTCCA+TGG + chr1_2:56244175-56244194 None:intergenic 45.0%
CGGACTATGCATTGAGGTAT+CGG - chr1_2:56244364-56244383 Msa0078590:CDS 45.0%
! AAGTTTCAGATGGGGCACTA+AGG - chr1_2:56244394-56244413 Msa0078590:CDS 45.0%
! AGTTTCAGATGGGGCACTAA+GGG - chr1_2:56244395-56244414 Msa0078590:CDS 45.0%
!! AAAAGGCGGACTATGCATTG+AGG - chr1_2:56245056-56245075 Msa0078590:CDS 45.0%
CGGACTATGCATTGAGGTAT+CGG - chr1_2:56244364-56244383 Msa0078590:CDS 45.0%
! AAGTTTCAGATGGGGCACTA+AGG - chr1_2:56244394-56244413 Msa0078590:CDS 45.0%
! AGTTTCAGATGGGGCACTAA+GGG - chr1_2:56244395-56244414 Msa0078590:CDS 45.0%
!! GGTGTGTCATTTATAACGGG+TGG + chr1_2:56245127-56245146 None:intergenic 45.0%
TACAGCGATGCTGAGATCAA+AGG - chr1_2:56245825-56245844 Msa0078590:CDS 45.0%
CACCATTTGCATACGAAGTC+TGG + chr1_2:56245964-56245983 None:intergenic 45.0%
TCTAGGTAATGCTTGCTTCG+AGG + chr1_2:56246141-56246160 None:intergenic 45.0%
TTTGCCTTTACATCCCTTGG+AGG - chr1_2:56246186-56246205 Msa0078590:CDS 45.0%
TTTGCCTCCAAGGGATGTAA+AGG + chr1_2:56246193-56246212 None:intergenic 45.0%
!! GCAAACTTTGGAGTACTTCC+TGG + chr1_2:56246306-56246325 None:intergenic 45.0%
! AGTTCAAGTGATGGTGAGGA+TGG - chr1_2:56246479-56246498 Msa0078590:CDS 45.0%
GATCCGTGATATGGTTGAAC+AGG - chr1_2:56246577-56246596 Msa0078590:CDS 45.0%
CACCTCCAAAGATGGCATTA+AGG - chr1_2:56246603-56246622 Msa0078590:CDS 45.0%
CCAGCAACTTCATCTACAGT+AGG + chr1_2:56246671-56246690 None:intergenic 45.0%
CCTACTGTAGATGAAGTTGC+TGG - chr1_2:56246668-56246687 Msa0078590:CDS 45.0%
!! ATAGTGGATGATGTAGGCAG+AGG - chr1_2:56246737-56246756 Msa0078590:CDS 45.0%
ATGTAGGCAGAGGATTGAGA+AGG - chr1_2:56246747-56246766 Msa0078590:CDS 45.0%
TATCCTTTAGTGTTTCCGCG+CGG - chr1_2:56246806-56246825 Msa0078590:CDS 45.0%
GACAATGATCCTCGAAAAGC+TGG - chr1_2:56247115-56247134 Msa0078590:CDS 45.0%
!!! ATTTTTGGCACTGTGACTGC+AGG - chr1_2:56247394-56247413 Msa0078590:CDS 45.0%
CACAACAGAATGTGTGCATG+TGG + chr1_2:56247541-56247560 None:intergenic 45.0%
CACATGCACACATTCTGTTG+TGG - chr1_2:56247539-56247558 Msa0078590:CDS 45.0%
TGCACACATTCTGTTGTGGT+TGG - chr1_2:56247543-56247562 Msa0078590:CDS 45.0%
CACATTCTGTTGTGGTTGGA+AGG - chr1_2:56247547-56247566 Msa0078590:CDS 45.0%
TCACAAACTGCACACAACCA+AGG - chr1_2:56247573-56247592 Msa0078590:CDS 45.0%
TTCATGATGCATGGACCATG+CGG - chr1_2:56247670-56247689 Msa0078590:CDS 45.0%
!! TTCAAATTTGCTGGTCCGCA+TGG + chr1_2:56247688-56247707 None:intergenic 45.0%
GAAAGCAGGAGAACAAGATG+AGG - chr1_2:56248002-56248021 Msa0078590:CDS 45.0%
TCTCTCCATGTGAAGCATGT+TGG - chr1_2:56248070-56248089 Msa0078590:CDS 45.0%
ATCTGCCTGACAAAAGGATG+TGG - chr1_2:56248319-56248338 Msa0078590:CDS 45.0%
ACAAAAGGATGTGGCATCCA+AGG - chr1_2:56248328-56248347 Msa0078590:CDS 45.0%
TCTTACATTCCTGTAGGCTC+AGG - chr1_2:56248378-56248397 Msa0078590:intron 45.0%
TAAAGTTCACCTGAGCCTAC+AGG + chr1_2:56248390-56248409 None:intergenic 45.0%
! CCCCTTACAACCCTTTTGAA+AGG + chr1_2:56248433-56248452 None:intergenic 45.0%
ACTGTCAATGGCAAGCTCTA+TGG - chr1_2:56248468-56248487 Msa0078590:intron 45.0%
AGGCTTCTAGATCACAGAGT+GGG - chr1_2:56248562-56248581 Msa0078590:intron 45.0%
GAATTCTCTATGCTCGACGA+CGG - chr1_2:56248682-56248701 Msa0078590:CDS 45.0%
CTGTGTAGTACGTAGAGTGT+TGG + chr1_2:56248750-56248769 None:intergenic 45.0%
! TCCATGCCTTACCCAGTTTT+TGG - chr1_2:56249109-56249128 Msa0078590:intron 45.0%
TCCAAAAACTGGGTAAGGCA+TGG + chr1_2:56249113-56249132 None:intergenic 45.0%
AAATCGGTTGAGTCCCAAGA+TGG - chr1_2:56249265-56249284 Msa0078590:intron 45.0%
GAACCGGAAAGACCTTTATG+TGG - chr1_2:56249317-56249336 Msa0078590:intron 45.0%
AGAATGAGTTGTCTTGCCTC+CGG + chr1_2:56249425-56249444 None:intergenic 45.0%
! GACTTGCTTCTCTAAGCAAC+TGG + chr1_2:56249516-56249535 None:intergenic 45.0%
AAACAGTGCCTGTGCATCAT+GGG + chr1_2:56249559-56249578 None:intergenic 45.0%
AAAACAGTGCCTGTGCATCA+TGG + chr1_2:56249560-56249579 None:intergenic 45.0%
!!! GGAAAGGTTGTCATTTTGGG+GGG - chr1_2:56249652-56249671 Msa0078590:CDS 45.0%
! CTGGTGGCTTTTCTAATGAC+GGG + chr1_2:56249697-56249716 None:intergenic 45.0%
AGGTTAATTGGGGATGTCAC+AGG - chr1_2:56249796-56249815 Msa0078590:intron 45.0%
! TGAAGATGGACAGAGCATCA+TGG - chr1_2:56249891-56249910 Msa0078590:CDS 45.0%
GAGCATCATGGATATTCCTG+AGG - chr1_2:56249903-56249922 Msa0078590:CDS 45.0%
CGACTACAAGTCAATCACCT+TGG - chr1_2:56250300-56250319 Msa0078590:intron 45.0%
TGCCACTGTCATTACAGGTA+AGG - chr1_2:56250338-56250357 Msa0078590:intron 45.0%
GCCACTGTCATTACAGGTAA+GGG - chr1_2:56250339-56250358 Msa0078590:intron 45.0%
ACCCTTACCTGTAATGACAG+TGG + chr1_2:56250343-56250362 None:intergenic 45.0%
!! AGGTAAGGGTATTGGGCAAA+AGG - chr1_2:56250353-56250372 Msa0078590:intron 45.0%
!! GGCAAAAGGTATTGATCCCA+AGG - chr1_2:56250367-56250386 Msa0078590:intron 45.0%
ATTTGGTCCCCTCAGATTCA+GGG - chr1_2:56250394-56250413 Msa0078590:intron 45.0%
ATGGAAACCCTGAATCTGAG+GGG + chr1_2:56250404-56250423 None:intergenic 45.0%
GAATGGAAACCCTGAATCTG+AGG + chr1_2:56250406-56250425 None:intergenic 45.0%
AACTGCCCATGTGTAAACAC+AGG + chr1_2:56250531-56250550 None:intergenic 45.0%
!! ATTATTTATATATAGTTAAA+GGG + chr1_2:56248817-56248836 None:intergenic 5.0%
!! AGGGGTTCTAAGAGGTGCAT+TGG + chr1_2:56243885-56243904 None:intergenic 50.0%
!! GGTGAAAGAGGGGTTCTAAG+AGG + chr1_2:56243893-56243912 None:intergenic 50.0%
CGCAATTAGCAAGGACGAAG+AGG - chr1_2:56244190-56244209 Msa0078590:CDS 50.0%
!! GGAGTGCCATTTATAACGGG+TGG + chr1_2:56244429-56244448 None:intergenic 50.0%
CGACTTCTTTGTTCAGGTGG+TGG + chr1_2:56244649-56244668 None:intergenic 50.0%
GGACTTCTTTGTTCAGGTGG+TGG + chr1_2:56245347-56245366 None:intergenic 50.0%
GGAAGTTTATTGCCTGAGCC+AGG - chr1_2:56246285-56246304 Msa0078590:CDS 50.0%
! TTTGGAGTACTTCCTGGCTC+AGG + chr1_2:56246300-56246319 None:intergenic 50.0%
! TCGCAGTTCAAGTGATGGTG+AGG - chr1_2:56246475-56246494 Msa0078590:CDS 50.0%
ACAGGGTTCACCTCCAAAGA+TGG - chr1_2:56246595-56246614 Msa0078590:CDS 50.0%
TCATAGCCATAATCACCGCG+CGG + chr1_2:56246824-56246843 None:intergenic 50.0%
CGGTGATTATGGCTATGAGG+AGG - chr1_2:56246826-56246845 Msa0078590:intron 50.0%
! ACACGTTGTCCAGCTTTTCG+AGG + chr1_2:56247127-56247146 None:intergenic 50.0%
CTGTAAGAGATTCGGCTACC+CGG - chr1_2:56247216-56247235 Msa0078590:CDS 50.0%
CCTCTTGCCATTCATGCATG+CGG + chr1_2:56247713-56247732 None:intergenic 50.0%
AAGGGACAATGGGGTTTGTG+TGG - chr1_2:56247807-56247826 Msa0078590:CDS 50.0%
AGCAGGAGAACAAGATGAGG+AGG - chr1_2:56248005-56248024 Msa0078590:CDS 50.0%
GCAGGAGAACAAGATGAGGA+GGG - chr1_2:56248006-56248025 Msa0078590:CDS 50.0%
! GGATGCCACATCCTTTTGTC+AGG + chr1_2:56248327-56248346 None:intergenic 50.0%
GAGGCTTCTAGATCACAGAG+TGG - chr1_2:56248561-56248580 Msa0078590:intron 50.0%
CGACGGATCCTCAATATTCC+AGG - chr1_2:56248699-56248718 Msa0078590:CDS 50.0%
CTGGGTAAGGCATGGATTTG+TGG + chr1_2:56249105-56249124 None:intergenic 50.0%
TCTGCAGCCATAAGGTCACA+AGG - chr1_2:56249349-56249368 Msa0078590:intron 50.0%
GCTTCTTTATTGTTGCCCGG+AGG - chr1_2:56249406-56249425 Msa0078590:intron 50.0%
GAATGAGTTGTCTTGCCTCC+GGG + chr1_2:56249424-56249443 None:intergenic 50.0%
GGAGGAATGCACAATTCCTC+AGG + chr1_2:56249922-56249941 None:intergenic 50.0%
TGTAGAGGATTGTCGCATGG+AGG + chr1_2:56249940-56249959 None:intergenic 50.0%
GCTTGTAGAGGATTGTCGCA+TGG + chr1_2:56249943-56249962 None:intergenic 50.0%
CGACAATCCTCTACAAGCGT+TGG - chr1_2:56249945-56249964 Msa0078590:CDS 50.0%
AGGGGACCAAATCCATCCTT+GGG + chr1_2:56250386-56250405 None:intergenic 50.0%
! GATTTGGTCCCCTCAGATTC+AGG - chr1_2:56250393-56250412 Msa0078590:intron 50.0%
CTCGGCCTGTGTTTACACAT+GGG - chr1_2:56250523-56250542 Msa0078590:intron 50.0%
AGGACTCCCTATTGCGCGTT+TGG - chr1_2:56245622-56245641 Msa0078590:CDS 55.0%
TCACCGCGCGGAAACACTAA+AGG + chr1_2:56246812-56246831 None:intergenic 55.0%
GTGTTTCCGCGCGGTGATTA+TGG - chr1_2:56246815-56246834 Msa0078590:intron 55.0%
GCGCGGTGATTATGGCTATG+AGG - chr1_2:56246823-56246842 Msa0078590:intron 55.0%
CAAGAGAGGGATTGCGAGTC+TGG - chr1_2:56246941-56246960 Msa0078590:CDS 55.0%
CCGCATGCATGAATGGCAAG+AGG - chr1_2:56247710-56247729 Msa0078590:CDS 55.0%
GAGGGGACCAAATCCATCCT+TGG + chr1_2:56250387-56250406 None:intergenic 55.0%
CCATGTGTAAACACAGGCCG+AGG + chr1_2:56250525-56250544 None:intergenic 55.0%
CCTCGGCCTGTGTTTACACA+TGG - chr1_2:56250522-56250541 Msa0078590:intron 55.0%
! ATGAGGCGCCCATGATGCAC+AGG - chr1_2:56249548-56249567 Msa0078590:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56243660 56250674 56243660 ID=Msa0078590;Name=Msa0078590
chr1_2 mRNA 56243660 56250674 56243660 ID=Msa0078590-mRNA-1;Parent=Msa0078590;Name=Msa0078590-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.18|0.08|0.33|1|1|12|0|1733
chr1_2 exon 56250587 56250674 56250587 ID=Msa0078590-mRNA-1:exon:17607;Parent=Msa0078590-mRNA-1
chr1_2 exon 56250411 56250494 56250411 ID=Msa0078590-mRNA-1:exon:17606;Parent=Msa0078590-mRNA-1
chr1_2 exon 56250073 56250258 56250073 ID=Msa0078590-mRNA-1:exon:17605;Parent=Msa0078590-mRNA-1
chr1_2 exon 56249854 56249982 56249854 ID=Msa0078590-mRNA-1:exon:17604;Parent=Msa0078590-mRNA-1
chr1_2 exon 56249625 56249747 56249625 ID=Msa0078590-mRNA-1:exon:17603;Parent=Msa0078590-mRNA-1
chr1_2 exon 56248927 56249049 56248927 ID=Msa0078590-mRNA-1:exon:17602;Parent=Msa0078590-mRNA-1
chr1_2 exon 56248636 56248779 56248636 ID=Msa0078590-mRNA-1:exon:17601;Parent=Msa0078590-mRNA-1
chr1_2 exon 56248488 56248556 56248488 ID=Msa0078590-mRNA-1:exon:17600;Parent=Msa0078590-mRNA-1
chr1_2 exon 56247952 56248393 56247952 ID=Msa0078590-mRNA-1:exon:17599;Parent=Msa0078590-mRNA-1
chr1_2 exon 56246919 56247853 56246919 ID=Msa0078590-mRNA-1:exon:17598;Parent=Msa0078590-mRNA-1
chr1_2 exon 56245614 56246831 56245614 ID=Msa0078590-mRNA-1:exon:17597;Parent=Msa0078590-mRNA-1
chr1_2 exon 56243660 56245320 56243660 ID=Msa0078590-mRNA-1:exon:17596;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56250587 56250674 56250587 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56250411 56250494 56250411 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56250073 56250258 56250073 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56249854 56249982 56249854 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56249625 56249747 56249625 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56248927 56249049 56248927 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56248636 56248779 56248636 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56248488 56248556 56248488 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56247952 56248393 56247952 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56246919 56247853 56246919 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56245614 56246831 56245614 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
chr1_2 CDS 56243660 56245320 56243660 ID=Msa0078590-mRNA-1:cds;Parent=Msa0078590-mRNA-1
Gene Sequence

>Msa0078590

ATGGAACCCAATGACCCAAAAACAACAAGGATGAAGAGAAAGTTAGCATCATTAGAAAGGGGTTCTACAAAAAGACCCAATGACAAAGGTAATGATGTTAATAATGACCTGAGTGACAGACAAATGCTATCCAATGCACCTCTTAGAACCCCTCTTTCACCATTGATGAATGTGGTCAATCAAGGATACTTAGATACAACACATAATTATGGTGTAAATTCAATGGATTCAACGAATCTTTCTGAGACACAAACATCAAGAGGGCTATCCATGGAACAATGTGACTCGCAATTAGCAAGGACGAAGAGGAAACATTCATTGTTACAAAGAGGATGCACCCAAAAACTTATTGATAAAGAGAATGAAAATGCGGACTATGCATTGAGGTATCGGAAAAAACAAGTTTCAGATGGGGCACTAAGGGTACCTAATCCACCCGTTATAAATGGCACTCCATTCATTCCTTCTCAAACAAGTATAACATCACTTGCATCAACCTTAACTCATTCAAGTTTGTTAAAGAGGTCAAGAGAAAAATCATCTCATCCACCACCTGAACAAAGAAGTCGATTATCCAATGTTTCGAACATTACATTTGCACATTCTTCAGTTGCATCAACCTTAACTCATTCAAGTTTGTTAAAGAGGTCAAGAGAAAAATCATCTCATCCACCACCTGAACAAAGAAGTCCATTATCCAATGTTTCGAACATTACATTTGCACATTCTTCAGAATCTCATCCAAGATATATAGCGAAGAAGGGTCAAATGACTCGAATTCAAAGGAAAAGACATTGCAAAGGACTCCCTATTGCGCGTTTGGATTTTGAAGCTGTTTTTGTTGAAGGCGGCTCATCATCGAACTCAGCAAAAGATGGTGGAGACAAAGAAAACATAAATTTGGATGACTTCAAAAATGGATTATACAGCGATGCTGAGATCAAAGGACCTCTTGATTTTGGCTATCCAGACTTCGTATGCAAATGGTGCAAAGCTAAACTTTGGATCGAAGAGAGGGCAATCAAGTCTAGACCTCCGAACAATGATTCCGAATTTTCCTTATGCTGTCAAAAGGGATATGTTGATATCCCTTTTGTAGAGGAACCTCCAAAACTACTGTTATCATTGCTTGATGGAAGTGATCCTCGAAGCAAGCATTACCTAGAGAACATCAGAGCATATAACAGTATGTTTGCCTTTACATCCCTTGGAGGCAAAGTGTTTTCAAAGCTCAACAATGGAAGAGGGCCGCCTCAATTTATATTAAGTGGACAGAATTATCATAGGATTGGAAGTTTATTGCCTGAGCCAGGAAGTACTCCAAAGTTTGCCCAACTATACATCTACGACACTCAAAACGAAATTCAAAATAGAACAAAAGTTTTTGATTCAAGTGATGGTGAGGATGGATTTGATCTTTCATTGGTTGAAGACCTGAAAATAATGTTGGACGAGTTTAACCCTTTATGCAAATCTTTTAGAAAGATCCGTGATATGGTTGAACAGGGTTCACCTCCAAAGATGGCATTAAGGTTGTTCAGGAAAAGGGAAAAGGACTCAAGAATGCACAATCTACCTACTGTAGATGAAGTTGCTGGGTTGATAATAGGTGATTATGATGAGACGGAAGAAGGAAGAGATATTATAGTGGATGATGTAGGCAGAGGATTGAGAAGGATACACGAGACACATCCATTATACATGCCACTTCAGTATCCTTTAGTGTTTCCGCGCGGTGATTATGGCTATGAGGAGGATATACCTTACAGGGAATTTGAAGATGAAGAAAAAAAGTCAAGAGGTTCAAGGGATAGAGTTGCAATTAGAGAATACATTGCTTTTAGAATTCAAGAGAGGGATTGCGAGTCTGGAAACATTGTGTATGCAAGAAGACTGATGCAACAATTTTCTGTTGATTGCTACACCATGATTGAAGCACAAAGGCTATCTTATATTCGGAATAACCAGGGAATTATTCGTTCCGATTTGTTGAGTGGGTTACAAGAAGCAGTTGAAGTCGGAGACAATGATCCTCGAAAAGCTGGACAACGTGTTATACTTCCAGATTCATTTACAGGTTCACCAAGGTACATGTTCAATAATTGTCAAGATGCAATGGCAATCTGTAAGAGATTCGGCTACCCGGATCTGTTCATCACAATAACTTGCAACTCAAATTGGAAGGAAATCAAAAACTTTGTTTCAGATAGAGGACTTAGTGCATCTGACAGACCTGATATCATTTGTAGAGTTTTCAAGATGAAGCTTGACCAAATGATGGCCGATTTTAAGAAAGATAAAATTTTTGGCACTGTGACTGCAGGTATGTATACCGTTGAGTTTCAAAAGAGAGGGCTCCCACATGCACACATTCTGTTGTGGTTGGAAGGTAATCACAAACTGCACACAACCAAGGAAATTGATATGGTTATATCAGCAGAGATTCCTCATCCAGACCTATATCCAAAGTTGCATTTGGCCGTTTCAACATTCATGATGCATGGACCATGCGGACCAGCAAATTTGAATTCCGCATGCATGAATGGCAAGAGGTGCACGAAATACTTTCCAAAGAAGTTCATAGATTCCACTTCAATAGATGAGGATGGTTTTCCGGTATACAAAAGAAGGGACAATGGGGTTTGTGTGGAAAAAAATGGTACTCAGTTGGACAATAGGTATGTTGTTCCTTACAATCCATTACTATTGATGAGATACCAAGGACATGTTAACACTGAGTATTGCAATAAGTCCAATGCAATAAAGTATCTTTTCAAATATGTCAACAAAGGTCCTGATAGAGCAAACCTCCAAATTAAAAAGAAAGCAGGAGAACAAGATGAGGAGGGTCCAATTGATGAAATAAAGCGTTACTATGATTGTCGCTATGTCTCTCCATGTGAAGCATGTTGGAGAATATTTATGTTTGATATCCATGAAAAATGGCCTGCTGTTTTGAGATTAGCTTTACATCTTGAGGGTCAACAATGTGTTAGGTTCAAGGAAAATCAAAAGCTTCCGAATGTTGTCAAATATCATCAATCAGTTCCTACAATGTTTCTTGCTTGGTTTGTTGCTAATCAAAATTATAGTGAGGGTAGAGACCTTACTTATGCCGAATTTCCATCAAAGTTTACTTATCTGCCTGACAAAAGGATGTGGCATCCAAGGAAAAATGGTTTTCAGATCGGGAGGTTGTCTTACATTCCTGTAGGCTCAGGTGAACTTTACTATATGAGGATTCTTTTAACCTTTCAAAAGGGTTGTAAGGGGTTTGATTGTATTAAAACTGTCAATGGCAAGCTCTATGGTAGTTTTCAAGATGCATGTTATGCTCTTGGTTTATTGTCTGATGATAAAGAGTTTATTGATGGAATTTTTGAGGCTTCTAGATCACAGAGTGGGCAAATGCTTCGTGTTTTGTTTGTTAGACTTTTAATCATGAGTACAATGCACAAGCCTGATAATGTATGGAAAGCTACTTGGAAGTTATTGGCAGATGGAATTCTCTATGCTCGACGACGGATCCTCAATATTCCAGATCTTCACATTCCAGATAGTGATTTGCAAAATCTTTGTCTTATTGAGATAGAAAAGTTGTTAATGTGCAATGGCAAATCATTGAAAGACCACAAATCCATGCCTTACCCAGTTTTTGGAGAGTTAATGGCCCAAACCAATAAATTCATTGCTGATGAATTGAATTATGACAAAGATAAGCAAGCTCAGCTACATAAATCTCTTCTTGAACAACTAACTGATGAGCAGCATCATGTTTATTCTACAATAATGAAATCGGTTGAGTCCCAAGATGGTCAATTCTATTTTTTGTATGGATATGGTGGAACCGGAAAGACCTTTATGTGGAAGACATTATCTGCAGCCATAAGGTCACAAGGCAAGATTGTAATTAATGTTGCTTCGAGCGGAATTGCTTCTTTATTGTTGCCCGGAGGCAAGACAACTCATTCTACATTTTGCATACCATTGAAAATTAATGAAAAATGTAATTGCAATGTGAAACAACAAGATCTTAGAGCCCAGTTGCTTAGAGAAGCAAGTCTAATTATATGGGATGAGGCGCCCATGATGCACAGGCACTGTTTTGAAGCATTTGACCGAACGATGCGCGATATAATGAGAGTTGTAGATGAGAAGAACTTGAACAAACCTTTTGGAGGAAAGGTTGTCATTTTGGGGGGAGATTTCAGACAGATTTTACCCGTCATTAGAAAAGCCACCAGACTTGATATTATGAAGGCATCTGTTAACTCTTCTAATATTTGGCGTAGCTGCAAGGTCTTAAAGCTGACAAGAAACATGAGGTTAATTGGGGATGTCACAGGTCATAGTGCAAATGAGATTAGAGATTTTGCAAATTGGATTTTGAAGATTGGAAATGGTGATATGATTGCAGATGAAGATGGACAGAGCATCATGGATATTCCTGAGGAATTGTGCATTCCTCCATGCGACAATCCTCTACAAGCGTTGGTTGATTTTGTCTATCCAGGTATTGTTGATAACATCGACAATCAAAGGATCTTTGAAGAGAAAGCGATACTTGCTCCCACCCTTGATTCTGTTGAACAAGTCAATGAGTATGTTCTTTCGTTGATTGAAGGTGAACCAAAAGAGTATCTAAGTTCTGATACACCTTGCAAATCTGATGAAGACTATGATATTCAAGGAGATTGGTGTACTACCAAATTTTTAAATGACATAAAATGTTCTGGAATACCAAACCATAGGTTGATTTTGAAGACTGGAGTTCCGATCATGTTGTTGAGAAACATCGATCAAGCAAGTGGGTTATGTAATGGAACGCGACTACAAGTCAATCACCTTGGCAAAAACATCATAACTGCCACTGTCATTACAGGTAAGGGTATTGGGCAAAAGGTATTGATCCCAAGGATGGATTTGGTCCCCTCAGATTCAGGGTTTCCATTCAAATTTTCAAGAAGACAATTTCCCATTTCATTGTGCTTTGCTATGACAATAAACAAGAGTCAGGGACAATCATTGTCAAAGGTTGGATTGTATCTACCTCGGCCTGTGTTTACACATGGGCAGTTGTATGTTGCCGTATCAAGGGTAACTACCAAGAAAGGGTTGAAAATGCTAATTTTGGATGATGATGGAAATCCATGCAATTCTACTATCAATGTTGTTTTTCCAGAGGTTTTTGATAATCTGTAG
Protein sequence

>Msa0078590

MEPNDPKTTRMKRKLASLERGSTKRPNDKGNDVNNDLSDRQMLSNAPLRTPLSPLMNVVNQGYLDTTHNYGVNSMDSTNLSETQTSRGLSMEQCDSQLARTKRKHSLLQRGCTQKLIDKENENADYALRYRKKQVSDGALRVPNPPVINGTPFIPSQTSITSLASTLTHSSLLKRSREKSSHPPPEQRSRLSNVSNITFAHSSVASTLTHSSLLKRSREKSSHPPPEQRSPLSNVSNITFAHSSESHPRYIAKKGQMTRIQRKRHCKGLPIARLDFEAVFVEGGSSSNSAKDGGDKENINLDDFKNGLYSDAEIKGPLDFGYPDFVCKWCKAKLWIEERAIKSRPPNNDSEFSLCCQKGYVDIPFVEEPPKLLLSLLDGSDPRSKHYLENIRAYNSMFAFTSLGGKVFSKLNNGRGPPQFILSGQNYHRIGSLLPEPGSTPKFAQLYIYDTQNEIQNRTKVFDSSDGEDGFDLSLVEDLKIMLDEFNPLCKSFRKIRDMVEQGSPPKMALRLFRKREKDSRMHNLPTVDEVAGLIIGDYDETEEGRDIIVDDVGRGLRRIHETHPLYMPLQYPLVFPRGDYGYEEDIPYREFEDEEKKSRGSRDRVAIREYIAFRIQERDCESGNIVYARRLMQQFSVDCYTMIEAQRLSYIRNNQGIIRSDLLSGLQEAVEVGDNDPRKAGQRVILPDSFTGSPRYMFNNCQDAMAICKRFGYPDLFITITCNSNWKEIKNFVSDRGLSASDRPDIICRVFKMKLDQMMADFKKDKIFGTVTAGMYTVEFQKRGLPHAHILLWLEGNHKLHTTKEIDMVISAEIPHPDLYPKLHLAVSTFMMHGPCGPANLNSACMNGKRCTKYFPKKFIDSTSIDEDGFPVYKRRDNGVCVEKNGTQLDNRYVVPYNPLLLMRYQGHVNTEYCNKSNAIKYLFKYVNKGPDRANLQIKKKAGEQDEEGPIDEIKRYYDCRYVSPCEACWRIFMFDIHEKWPAVLRLALHLEGQQCVRFKENQKLPNVVKYHQSVPTMFLAWFVANQNYSEGRDLTYAEFPSKFTYLPDKRMWHPRKNGFQIGRLSYIPVGSGELYYMRILLTFQKGCKGFDCIKTVNGKLYGSFQDACYALGLLSDDKEFIDGIFEASRSQSGQMLRVLFVRLLIMSTMHKPDNVWKATWKLLADGILYARRRILNIPDLHIPDSDLQNLCLIEIEKLLMCNGKSLKDHKSMPYPVFGELMAQTNKFIADELNYDKDKQAQLHKSLLEQLTDEQHHVYSTIMKSVESQDGQFYFLYGYGGTGKTFMWKTLSAAIRSQGKIVINVASSGIASLLLPGGKTTHSTFCIPLKINEKCNCNVKQQDLRAQLLREASLIIWDEAPMMHRHCFEAFDRTMRDIMRVVDEKNLNKPFGGKVVILGGDFRQILPVIRKATRLDIMKASVNSSNIWRSCKVLKLTRNMRLIGDVTGHSANEIRDFANWILKIGNGDMIADEDGQSIMDIPEELCIPPCDNPLQALVDFVYPGIVDNIDNQRIFEEKAILAPTLDSVEQVNEYVLSLIEGEPKEYLSSDTPCKSDEDYDIQGDWCTTKFLNDIKCSGIPNHRLILKTGVPIMLLRNIDQASGLCNGTRLQVNHLGKNIITATVITGKGIGQKVLIPRMDLVPSDSGFPFKFSRRQFPISLCFAMTINKSQGQSLSKVGLYLPRPVFTHGQLYVAVSRVTTKKGLKMLILDDDGNPCNSTINVVFPEVFDNL*