AlfalfaGEDB | Msa0914210

M. sativa cultivar zhongmu-4 / Msa0914210

KEGG: K07953
GO: -
PFAM: PF00025.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914210	CAA69398.1	52.419	124	37	1	30	153	11	112	3.07e-27	109

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914210	sp\|O04266\|SAR1A_BRACM	52.419	124	37	1	30	153	30	131	3.74e-29	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0642970	Msa0914210	0.808684	2.744190e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914210	MtrunA17_Chr7g0271761	53.226	124	36	1	30	153	30	131	1.77e-30	109
Msa0914210	MtrunA17_Chr2g0294701	52.419	124	37	1	30	153	30	131	4.33e-30	108
Msa0914210	MtrunA17_Chr4g0068171	50.806	124	39	1	30	153	30	131	3.20e-29	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914210	AT4G02080.1	52.419	124	37	1	30	153	30	131	5.72e-30	108
Msa0914210	AT3G62560.1	52.419	124	37	1	30	153	30	131	6.30e-30	108
Msa0914210	AT1G56330.1	50.806	124	39	1	30	153	30	131	2.78e-29	107
Msa0914210	AT1G09180.1	47.581	124	43	1	30	153	30	131	2.67e-26	99.4
Msa0914210	AT1G02620.1	69.388	49	15	0	105	153	12	60	1.62e-14	66.6

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Find 77 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAATGGGTTATGGTGA+TGG	0.542914	6_2:-27217556	Msa0914210:three_prime_UTR
AATGTCCCTTTCCTTGTCCT+TGG	0.407599	6_2:-27217724	Msa0914210:CDS
AATTGAAAGCCAGAAAGATG+AGG	0.640929	6_2:-27219714	Msa0914210:exon
ACAGTGGCGCAGCGAGATAA+CGG	0.512663	6_2:+27219927	None:intergenic
ACATCAGAAGAGTTGAGTAT+TGG	0.487462	6_2:-27218683	Msa0914210:CDS
ACATGAATACCTCCATGGGT+CGG	0.669346	6_2:+27217590	None:intergenic
ACCCAATTTCATGAGCGGAA+AGG	0.581440	6_2:+27219762	None:intergenic
ACGGCAACGAAGTTTAGCTT+TGG	0.411869	6_2:+27219946	None:intergenic
ACTACACATGAATACCTCCA+TGG	0.577745	6_2:+27217585	None:intergenic
AGAAGGTCAAGGATGAAATT+GGG	0.521910	6_2:-27219657	Msa0914210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAAAAACAGAAGGTCA+AGG	-	chr6_2:27217693-27217712	Msa0914210:CDS	30.0%
TCACATGTTTATGTCAACAA+AGG	+	chr6_2:27218133-27218152	None:intergenic	30.0%
TTATATGCAACTTAAAGCAC+AGG	+	chr6_2:27218422-27218441	None:intergenic	30.0%
AACACAGCAAAACAAGTTAA+GGG	+	chr6_2:27218463-27218482	None:intergenic	30.0%
ATATCTTTATCTCTGAGTCT+TGG	-	chr6_2:27218585-27218604	Msa0914210:intron	30.0%
AGACATAATTTAATCAGGGA+AGG	+	chr6_2:27218873-27218892	None:intergenic	30.0%
TCCCTGATTAAATTATGTCT+TGG	-	chr6_2:27218873-27218892	Msa0914210:intron	30.0%
GTCCAAGACATAATTTAATC+AGG	+	chr6_2:27218878-27218897	None:intergenic	30.0%
AGATTCTAAGCCAATATCTT+AGG	+	chr6_2:27218987-27219006	None:intergenic	30.0%
ATACAATGGATAGAATGCAA+GGG	+	chr6_2:27219221-27219240	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	27217355	27220028	27217355	ID=Msa0914210;Name=Msa0914210
chr6_2	mRNA	27217355	27220028	27217355	ID=Msa0914210-mRNA-1;Parent=Msa0914210;Name=Msa0914210-mRNA-1;_AED=0.29;_eAED=0.29;_QI=309\|0.33\|0.5\|1\|0\|0.5\|4\|307\|169
chr6_2	exon	27217355	27217844	27217355	ID=Msa0914210-mRNA-1:exon:5120;Parent=Msa0914210-mRNA-1
chr6_2	exon	27218606	27218665	27218606	ID=Msa0914210-mRNA-1:exon:5119;Parent=Msa0914210-mRNA-1
chr6_2	exon	27218674	27218811	27218674	ID=Msa0914210-mRNA-1:exon:5118;Parent=Msa0914210-mRNA-1
chr6_2	exon	27219591	27220028	27219591	ID=Msa0914210-mRNA-1:exon:5117;Parent=Msa0914210-mRNA-1
chr6_2	five_prime_UTR	27219720	27220028	27219720	ID=Msa0914210-mRNA-1:five_prime_utr;Parent=Msa0914210-mRNA-1
chr6_2	CDS	27219591	27219719	27219591	ID=Msa0914210-mRNA-1:cds;Parent=Msa0914210-mRNA-1
chr6_2	CDS	27218674	27218811	27218674	ID=Msa0914210-mRNA-1:cds;Parent=Msa0914210-mRNA-1
chr6_2	CDS	27218606	27218665	27218606	ID=Msa0914210-mRNA-1:cds;Parent=Msa0914210-mRNA-1
chr6_2	CDS	27217662	27217844	27217662	ID=Msa0914210-mRNA-1:cds;Parent=Msa0914210-mRNA-1
chr6_2	three_prime_UTR	27217355	27217661	27217355	ID=Msa0914210-mRNA-1:three_prime_utr;Parent=Msa0914210-mRNA-1

Gene Sequence

>Msa0914210

ATGAGGTTGGTAGGAAGCAACGAATCTAGAATTGAAAAACAGAAGGTCAAGGATGAAATTGGGTGGAAGCAGCGAACAGAACGAGGCAACGGCGGCGAAACCACCTTGCTTCACATGCTCAAAGATGAGCAAGTGTGTGTTTATATCTTTATCTCTGAGTCTTGGTGTAATGTTTCTTTTATCATGAGAATTGGTTTTGCAGCGATTAGTCCAGCATTAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAACTTTTGATTTGGGTGGGTCATCAGATTGCTCGTAGAGTATGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTAGATGCTCTCCTTTCTGATGAATCATTGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGTTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGA

Protein sequence

>Msa0914210

MRLVGSNESRIEKQKVKDEIGWKQRTERGNGGETTLLHMLKDEQVCVYIFISESWCNVSFIMRIGFAAISPALADSVSDIRRVEYWEDQLLIWVGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLQMSLSLSLETKLIFHMLPQKTNCVTIWA*