AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642970 MtrunA17_Chr4g0028981 97.861 187 2 1 1 187 1 185 6.54e-132 367
Msa0642970 MtrunA17_Chr1g0186591 48.000 150 77 1 37 185 1 150 7.34e-44 143
Msa0642970 MtrunA17_Chr1g0186551 49.007 151 76 1 37 186 1 151 5.62e-43 140
Msa0642970 MtrunA17_Chr4g0009521 44.444 153 82 1 37 186 2 154 1.35e-37 127
Msa0642970 MtrunA17_Chr8g0373951 38.095 147 90 1 37 182 1 147 8.26e-30 107
Msa0642970 MtrunA17_Chr1g0167831 45.113 133 72 1 37 168 1 133 8.18e-26 97.1
Msa0642970 MtrunA17_Chr5g0403141 37.086 151 94 1 37 186 2 152 1.64e-19 80.9
Msa0642970 MtrunA17_Chr4g0034251 36.424 151 95 1 37 186 15 165 4.48e-18 77.4
Msa0642970 MtrunA17_Chr5g0412891 72.093 43 12 0 35 77 26 68 9.45e-15 66.2
Msa0642970 MtrunA17_Chr7g0248311 60.000 45 18 0 33 77 26 70 4.18e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642970 AT2G28370.1 72.193 187 44 1 1 187 1 179 2.54e-88 257
Msa0642970 AT2G37200.1 63.102 187 61 2 1 187 2 180 2.60e-70 211
Msa0642970 AT2G37200.2 63.102 187 61 2 1 187 31 209 7.59e-70 211
Msa0642970 AT3G23200.1 50.331 151 74 1 37 186 1 151 4.20e-44 144
Msa0642970 AT3G53850.1 45.752 153 80 1 37 186 1 153 8.66e-40 133
Msa0642970 AT3G53850.2 45.752 153 80 1 37 186 1 153 8.66e-40 133
Msa0642970 AT5G02060.1 47.020 151 77 1 37 184 1 151 1.78e-34 119
Msa0642970 AT3G50810.3 39.735 151 90 1 37 186 1 151 2.75e-28 103
Msa0642970 AT3G50810.2 39.735 151 90 1 37 186 1 151 2.75e-28 103
Msa0642970 AT3G50810.1 39.735 151 90 1 37 186 1 151 2.75e-28 103
Msa0642970 AT3G23200.2 47.664 107 55 1 81 186 18 124 3.24e-26 97.4
Msa0642970 AT3G53850.3 40.602 133 74 2 57 186 10 140 2.06e-25 95.9
Msa0642970 AT4G37235.1 35.417 144 87 3 45 186 9 148 1.33e-17 76.3
Msa0642970 AT1G49405.1 32.061 131 89 0 37 167 1 131 8.90e-14 65.9

Find 67 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGATGTTTATGCCATTT+TGG 0.142401 4_3:+45318820 Msa0642970:CDS
AGATATCTGAATTAGGATTT+TGG 0.182472 4_3:+45319428 Msa0642970:three_prime_UTR
TCTTCTTAACTTCTGGTCTT+TGG 0.220309 4_3:+45319228 Msa0642970:CDS
ATTATGAATTGAAGTGTAAT+TGG 0.246491 4_3:+45314756 Msa0642970:five_prime_UTR
TTCCTTCTGTCACTGCCTTC+TGG 0.281533 4_3:+45315004 Msa0642970:CDS
TCAAACAAGATATCTGAATT+AGG 0.288553 4_3:+45319421 Msa0642970:three_prime_UTR
CGTCATTTCTTCTTAACTTC+TGG 0.294825 4_3:+45319221 Msa0642970:CDS
CTGCTGGCTTGCAGACTTTG+TGG 0.320664 4_3:+45318780 Msa0642970:CDS
CAAAGATCGTCTTACCAAAA+TGG 0.321266 4_3:-45318834 None:intergenic
AACATACCAAGATGAAGAAT+TGG 0.339934 4_3:-45314469 None:intergenic
CTCTCTCCAATTCTTCATCT+TGG 0.344224 4_3:+45314463 Msa0642970:five_prime_UTR
AGTTTCCTTGTTGCGGCTGC+TGG 0.344483 4_3:+45318764 Msa0642970:intron
TGTGCATTATTCTATTCTAT+TGG 0.349073 4_3:+45319515 Msa0642970:three_prime_UTR
GATCTGTATTAGAAGCAAAA+TGG 0.361630 4_3:-45314437 None:intergenic
GGCTGCTGCACTATCTGTTA+TGG 0.379001 4_3:+45314966 Msa0642970:CDS
GTAGTTGGAACTTCTTCAAC+TGG 0.379154 4_3:-45314814 None:intergenic
AGTACATGAATCACATCATT+TGG 0.380513 4_3:-45319388 None:intergenic
CAAGGCATGCCTGGTACTAT+TGG 0.395458 4_3:+45314907 Msa0642970:CDS
TCAGATATCTTGTTTGATCA+AGG 0.402168 4_3:-45319415 None:intergenic
GTTGTTTATAAAGTTTGTTT+TGG 0.403633 4_3:+45319304 Msa0642970:three_prime_UTR
CTTGTCAGTTCATTTACAAT+TGG 0.411892 4_3:+45318869 Msa0642970:CDS
GTTGTGGTTTAATTCACATT+TGG 0.426478 4_3:+45319456 Msa0642970:three_prime_UTR
GTGCTCATTGATAATGATCT+TGG 0.426791 4_3:+45319121 Msa0642970:CDS
GCAGCAGCTTGTGCATCAGC+GGG 0.451898 4_3:+45319091 Msa0642970:CDS
TGGTGGTGGAATGATTAAAC+AGG 0.463313 4_3:+45319476 Msa0642970:three_prime_UTR
TGCAGCAGCTTGTGCATCAG+CGG 0.471402 4_3:+45319090 Msa0642970:CDS
TTGTTGGTGTTGTTGAATGT+TGG 0.483962 4_3:-45314381 None:intergenic
GGCATGCCTGGTACTATTGG+TGG 0.484167 4_3:+45314910 Msa0642970:CDS
GTATATATATTGAAGTGAAC+GGG 0.489712 4_3:-45319538 None:intergenic
GTGGTTTAATTCACATTTGG+TGG 0.493013 4_3:+45319459 Msa0642970:three_prime_UTR
ACTGCGAAACACGCAGAGAA+AGG 0.497789 4_3:-45314933 None:intergenic
TTATGAATTGAAGTGTAATT+GGG 0.498808 4_3:+45314757 Msa0642970:five_prime_UTR
CACCAACAACTGCACTCTGC+AGG 0.499536 4_3:+45314395 Msa0642970:five_prime_UTR
CAGGCATGGCATTCATATGC+TGG 0.517979 4_3:+45319185 Msa0642970:CDS
GTTCATTTACAATTGGCGAT+GGG 0.519096 4_3:+45318876 Msa0642970:CDS
TGCCTGCAGAGTGCAGTTGT+TGG 0.519412 4_3:-45314397 None:intergenic
TGTTTGAAGTTTGTTAAGCT+TGG 0.520797 4_3:+45319344 Msa0642970:three_prime_UTR
GTTTAATTCACATTTGGTGG+TGG 0.522418 4_3:+45319462 Msa0642970:three_prime_UTR
GTTCAGTTTGAAACGGCTAC+AGG 0.524200 4_3:+45319166 Msa0642970:CDS
CCACCACCACCATCAGTAGT+TGG 0.528851 4_3:-45314829 None:intergenic
ACAAAATGTAAATGTTCCTA+TGG 0.529828 4_3:+45314867 Msa0642970:CDS
CCACTGTGTTCAGTTTGAAA+CGG 0.533491 4_3:+45319159 Msa0642970:CDS
TGTTCCTATGGTGAGGATGA+AGG 0.538780 4_3:+45314879 Msa0642970:CDS
CACACATGGCAACAGAAACA+AGG 0.540791 4_3:+45319277 Msa0642970:three_prime_UTR
AAGGATATTCAAGGCATGCC+TGG 0.544386 4_3:+45314898 Msa0642970:CDS
CCAACTACTGATGGTGGTGG+TGG 0.546534 4_3:+45314829 Msa0642970:CDS
AGTTCATTTACAATTGGCGA+TGG 0.548303 4_3:+45318875 Msa0642970:CDS
AGTATATATATTGAAGTGAA+CGG 0.551809 4_3:-45319539 None:intergenic
GTGAGGATGAAGGATATTCA+AGG 0.554642 4_3:+45314889 Msa0642970:CDS
TTCATTTACAATTGGCGATG+GGG 0.560218 4_3:+45318877 Msa0642970:CDS
GTTTGAAACGGCTACAGGCA+TGG 0.571754 4_3:+45319171 Msa0642970:CDS
TACCAGAAGGCAGTGACAGA+AGG 0.577487 4_3:-45315006 None:intergenic
GCAAGCCAGCAGCCGCAACA+AGG 0.578048 4_3:-45318769 None:intergenic
GAAGAAGTTCCAACTACTGA+TGG 0.579056 4_3:+45314820 Msa0642970:CDS
GAAAGGCCACCAATAGTACC+AGG 0.589357 4_3:-45314916 None:intergenic
ATATCCTTCATCCTCACCAT+AGG 0.600777 4_3:-45314883 None:intergenic
GACAGAAGGAAAATCACTAG+TGG 0.601889 4_3:-45314992 None:intergenic
CAACTGGGTGAATTGAAGCA+TGG 0.610931 4_3:-45314798 None:intergenic
ACTTCTGGTCTTTGGCATCG+AGG 0.636800 4_3:+45319236 Msa0642970:CDS
CAGAAGTTAAGAAGAAATGA+CGG 0.644975 4_3:-45319220 None:intergenic
TTGTAAATGAACTGACAAGT+CGG 0.646171 4_3:-45318865 None:intergenic
ACACATGGCAACAGAAACAA+GGG 0.658611 4_3:+45319278 Msa0642970:three_prime_UTR
TAGTTGGAACTTCTTCAACT+GGG 0.665313 4_3:-45314813 None:intergenic
ATGTAAATGTTCCTATGGTG+AGG 0.675797 4_3:+45314872 Msa0642970:CDS
GTTCCAACTACTGATGGTGG+TGG 0.688480 4_3:+45314826 Msa0642970:CDS
GAAGTTCCAACTACTGATGG+TGG 0.707650 4_3:+45314823 Msa0642970:CDS
CCGTTTCAAACTGAACACAG+TGG 0.767887 4_3:-45319159 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTATGTATATAAATAAA+AGG + chr4_3:45314587-45314606 Msa0642970:intron 10.0%
!!! AACTTTATTGTATTTTTTAT+TGG - chr4_3:45314635-45314654 None:intergenic 10.0%
!! TAAAAAAATAGCAAAAAATA+TGG - chr4_3:45317947-45317966 None:intergenic 10.0%
!!! AGTTAAATTGTATTTTATAT+AGG - chr4_3:45318565-45318584 None:intergenic 10.0%
!!! TTTATTACTTTTTAGATCAT+TGG + chr4_3:45314661-45314680 Msa0642970:intron 15.0%
!!! TTATTACTTTTTAGATCATT+GGG + chr4_3:45314662-45314681 Msa0642970:intron 15.0%
!! GGTTATTGAAATTATTTGAT+GGG + chr4_3:45314683-45314702 Msa0642970:intron 20.0%
!! ATTATGAATTGAAGTGTAAT+TGG + chr4_3:45314756-45314775 Msa0642970:five_prime_UTR 20.0%
!! TTATGAATTGAAGTGTAATT+GGG + chr4_3:45314757-45314776 Msa0642970:five_prime_UTR 20.0%
!!! TTGTTTATCGTATAAGTTTT+CGG + chr4_3:45315036-45315055 Msa0642970:intron 20.0%
!! TGTTTAAATTACACTATGTA+TGG + chr4_3:45315266-45315285 Msa0642970:intron 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG - chr4_3:45315437-45315456 None:intergenic 20.0%
!! TATACACTATTTAGTACAAA+TGG - chr4_3:45315601-45315620 None:intergenic 20.0%
!! AATAAAAGAGAGAAATACAA+AGG + chr4_3:45315761-45315780 Msa0642970:intron 20.0%
!! ATAAAAGAGAGAAATACAAA+GGG + chr4_3:45315762-45315781 Msa0642970:intron 20.0%
!! AAATGACAGAAAATAACAAA+TGG + chr4_3:45316429-45316448 Msa0642970:intron 20.0%
!!! ACAATAGTAGTTTTGATATA+TGG + chr4_3:45316834-45316853 Msa0642970:intron 20.0%
!!! TTACATATGTTTCTAATACA+TGG + chr4_3:45317018-45317037 Msa0642970:intron 20.0%
!!! GTCATATCTTTTTACTTTTA+TGG + chr4_3:45317113-45317132 Msa0642970:intron 20.0%
!!! TTTTTAGTAGTAGTTCTATT+TGG + chr4_3:45317961-45317980 Msa0642970:intron 20.0%
!! CAAAGTTTCATATTAACTAT+TGG + chr4_3:45318194-45318213 Msa0642970:intron 20.0%
!! TAAGAGCTTATTTGTTTATT+TGG + chr4_3:45318416-45318435 Msa0642970:intron 20.0%
!!! TGCATTATTTCTATAATCAA+TGG - chr4_3:45318593-45318612 None:intergenic 20.0%
!! ATATAATGATCTGTTCAATT+AGG - chr4_3:45318661-45318680 None:intergenic 20.0%
!!! GAACAGATCATTATATATTT+TGG + chr4_3:45318665-45318684 Msa0642970:intron 20.0%
!!! TCTATATAGCATTTTCAAAT+GGG - chr4_3:45319015-45319034 None:intergenic 20.0%
!!! GTTGTTTATAAAGTTTGTTT+TGG + chr4_3:45319304-45319323 Msa0642970:three_prime_UTR 20.0%
!!! ATGTTTCTTTTTCTGCTTTT+TGG + chr4_3:45314487-45314506 Msa0642970:intron 25.0%
!!! TGTTTCTTTTTCTGCTTTTT+GGG + chr4_3:45314488-45314507 Msa0642970:intron 25.0%
! TAATTCATGTACTATAAGCT+AGG + chr4_3:45314527-45314546 Msa0642970:intron 25.0%
! GGGTTATTGAAATTATTTGA+TGG + chr4_3:45314682-45314701 Msa0642970:intron 25.0%
! ACAAAATGTAAATGTTCCTA+TGG + chr4_3:45314867-45314886 Msa0642970:CDS 25.0%
!!! AGTTGTCACTTTTTAGATTT+AGG + chr4_3:45315144-45315163 Msa0642970:intron 25.0%
! TTAGACAAAAATCTCTAACT+TGG - chr4_3:45315175-45315194 None:intergenic 25.0%
!! AAGTTAGAGATTTTTGTCTA+AGG + chr4_3:45315174-45315193 Msa0642970:intron 25.0%
! ATAAGATGTTTAATCCAAAC+AGG + chr4_3:45315575-45315594 Msa0642970:intron 25.0%
! AGATAAAATAGGAAATGTGA+CGG + chr4_3:45315736-45315755 Msa0642970:intron 25.0%
!! ATCAGATTTGTTTGTCAATT+GGG + chr4_3:45315831-45315850 Msa0642970:intron 25.0%
!! ATTTCTTATTGTGTGTTTTC+AGG - chr4_3:45315978-45315997 None:intergenic 25.0%
! TCTGAATTCTTAACAATTTC+TGG - chr4_3:45316087-45316106 None:intergenic 25.0%
!!! TCATTTTTTCAAATTCCTAC+CGG + chr4_3:45316166-45316185 Msa0642970:intron 25.0%
! AATCAATAGTGATGTTCTAA+AGG - chr4_3:45316276-45316295 None:intergenic 25.0%
! TCTCACACTAAAATCTAAAT+AGG + chr4_3:45316664-45316683 Msa0642970:intron 25.0%
! CTCACACTAAAATCTAAATA+GGG + chr4_3:45316665-45316684 Msa0642970:intron 25.0%
!!! TACAAAGTGTTGTTAAATAG+TGG - chr4_3:45316795-45316814 None:intergenic 25.0%
! ATGGTTAAATGTTTATCTAC+TGG + chr4_3:45316887-45316906 Msa0642970:intron 25.0%
! TGGTTAAATGTTTATCTACT+GGG + chr4_3:45316888-45316907 Msa0642970:intron 25.0%
!! TGAATTTGAAATTGTTCTAG+AGG + chr4_3:45317044-45317063 Msa0642970:intron 25.0%
! TGCTGTGAAAACTTAATAAT+AGG + chr4_3:45317080-45317099 Msa0642970:intron 25.0%
! GTGAAAACTTAATAATAGGT+TGG + chr4_3:45317084-45317103 Msa0642970:intron 25.0%
! TACTAATAAAGATGATTTCG+AGG + chr4_3:45317207-45317226 Msa0642970:intron 25.0%
! ATAAAATGTAAGACTACCTA+AGG - chr4_3:45317354-45317373 None:intergenic 25.0%
! TATTTCCAGAATAGAAATCT+AGG - chr4_3:45317569-45317588 None:intergenic 25.0%
!! TATTCTGGAAATAAAGTAGT+CGG + chr4_3:45317576-45317595 Msa0642970:intron 25.0%
! TATGAAACTTTGATAGAAAC+TGG - chr4_3:45318186-45318205 None:intergenic 25.0%
! ATTTATTTGTAGACAATACC+AGG + chr4_3:45318335-45318354 Msa0642970:intron 25.0%
! AAACTCAATAAAACACTTAG+AGG - chr4_3:45318460-45318479 None:intergenic 25.0%
!!! TATTTTGGCTTTATCTTTGT+TGG + chr4_3:45318680-45318699 Msa0642970:intron 25.0%
! ATTCCTCTTATATTTACGAA+AGG + chr4_3:45318704-45318723 Msa0642970:intron 25.0%
!! ACAATATTAATGAGTCTTGT+TGG - chr4_3:45318911-45318930 None:intergenic 25.0%
!! CTCTATATAGCATTTTCAAA+TGG - chr4_3:45319016-45319035 None:intergenic 25.0%
!!! ATAAAGTTTGTTTTGGTATC+AGG + chr4_3:45319311-45319330 Msa0642970:three_prime_UTR 25.0%
! TCAAACAAGATATCTGAATT+AGG + chr4_3:45319421-45319440 Msa0642970:three_prime_UTR 25.0%
!! AGATATCTGAATTAGGATTT+TGG + chr4_3:45319428-45319447 Msa0642970:three_prime_UTR 25.0%
! TGTGCATTATTCTATTCTAT+TGG + chr4_3:45319515-45319534 Msa0642970:three_prime_UTR 25.0%
GATCTGTATTAGAAGCAAAA+TGG - chr4_3:45314440-45314459 None:intergenic 30.0%
AACATACCAAGATGAAGAAT+TGG - chr4_3:45314472-45314491 None:intergenic 30.0%
!!! TGATGGGTTTTGATTAGATT+TGG + chr4_3:45314699-45314718 Msa0642970:intron 30.0%
AAGAAGAAGAAGAAGAAAGT+TGG + chr4_3:45314724-45314743 Msa0642970:five_prime_UTR 30.0%
AGAAGAAGAAGAAGAAAGTT+GGG + chr4_3:45314725-45314744 Msa0642970:five_prime_UTR 30.0%
AAACAAAACGAATTACCAGA+AGG - chr4_3:45315022-45315041 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr4_3:45315345-45315364 Msa0642970:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr4_3:45315346-45315365 Msa0642970:intron 30.0%
AAAGGGAAGAGAGATAAAAT+AGG + chr4_3:45315725-45315744 Msa0642970:intron 30.0%
! GATCAGATTTGTTTGTCAAT+TGG + chr4_3:45315830-45315849 Msa0642970:intron 30.0%
AAGTATCTGTCACATGATTA+TGG + chr4_3:45315880-45315899 Msa0642970:intron 30.0%
ATATCAGTGTCATGTGTATT+TGG + chr4_3:45315908-45315927 Msa0642970:intron 30.0%
AGTAAGACTAATTGTTCTAC+AGG - chr4_3:45316011-45316030 None:intergenic 30.0%
CAAGAAAAGACTAAACAAGA+TGG + chr4_3:45316050-45316069 Msa0642970:intron 30.0%
CGAATCATATAGTGATCTTT+CGG - chr4_3:45316245-45316264 None:intergenic 30.0%
AACAGTGAGAATATCTTAGA+GGG - chr4_3:45316320-45316339 None:intergenic 30.0%
AAACAGTGAGAATATCTTAG+AGG - chr4_3:45316321-45316340 None:intergenic 30.0%
! ATTGTAACTAACTAGCTCTT+AGG - chr4_3:45316408-45316427 None:intergenic 30.0%
GATAATTTCACCAAATCCAA+CGG - chr4_3:45316592-45316611 None:intergenic 30.0%
! ATAAAATGTTTCTGCCACAT+AGG + chr4_3:45316861-45316880 Msa0642970:intron 30.0%
CATTTAACCATTTACCTATG+TGG - chr4_3:45316878-45316897 None:intergenic 30.0%
ATATTTATACCATACCCATG+TGG - chr4_3:45316949-45316968 None:intergenic 30.0%
TTTATGGTCAGTGAATTCAT+TGG + chr4_3:45317129-45317148 Msa0642970:intron 30.0%
TTATGGTCAGTGAATTCATT+GGG + chr4_3:45317130-45317149 Msa0642970:intron 30.0%
ATGCTATGTGTATATAGCAA+TGG + chr4_3:45317422-45317441 Msa0642970:intron 30.0%
TGCTATGTGTATATAGCAAT+GGG + chr4_3:45317423-45317442 Msa0642970:intron 30.0%
AGAGTCTTTCAAATATCTCT+GGG + chr4_3:45317493-45317512 Msa0642970:intron 30.0%
GGATTTCCATTTGTAATTTC+TGG + chr4_3:45317514-45317533 Msa0642970:intron 30.0%
TATGGACCAGAAATTACAAA+TGG - chr4_3:45317523-45317542 None:intergenic 30.0%
! ACCATCTTAGAATTTGAGTT+GGG - chr4_3:45317708-45317727 None:intergenic 30.0%
AACCATCTTAGAATTTGAGT+TGG - chr4_3:45317709-45317728 None:intergenic 30.0%
TATCTCATCTCATCCAATAT+GGG - chr4_3:45317835-45317854 None:intergenic 30.0%
ATATCTCATCTCATCCAATA+TGG - chr4_3:45317836-45317855 None:intergenic 30.0%
!!! ATATGGCCAGAATTTTAGTT+AGG - chr4_3:45317930-45317949 None:intergenic 30.0%
TGTTGTAGAGAGTCTTAAAA+TGG + chr4_3:45318226-45318245 Msa0642970:intron 30.0%
GTTGTAGAGAGTCTTAAAAT+GGG + chr4_3:45318227-45318246 Msa0642970:intron 30.0%
! CAACAATACCAAATGCTTTT+AGG - chr4_3:45318286-45318305 None:intergenic 30.0%
AAGCATTTGGTATTGTTGTA+TGG + chr4_3:45318288-45318307 Msa0642970:intron 30.0%
ATTTGGTATTGTTGTATGGA+GGG + chr4_3:45318292-45318311 Msa0642970:intron 30.0%
TAGCCTTTCGTAAATATAAG+AGG - chr4_3:45318710-45318729 None:intergenic 30.0%
! TTTTATCAGTTTCCTTGTTG+CGG + chr4_3:45318757-45318776 Msa0642970:intron 30.0%
!! TACTGATGTTTATGCCATTT+TGG + chr4_3:45318820-45318839 Msa0642970:CDS 30.0%
TTGTAAATGAACTGACAAGT+CGG - chr4_3:45318868-45318887 None:intergenic 30.0%
CTTGTCAGTTCATTTACAAT+TGG + chr4_3:45318869-45318888 Msa0642970:CDS 30.0%
ACATGTATCTTATTACATGC+AGG + chr4_3:45319048-45319067 Msa0642970:intron 30.0%
CAGAAGTTAAGAAGAAATGA+CGG - chr4_3:45319223-45319242 None:intergenic 30.0%
!! TGTTTGAAGTTTGTTAAGCT+TGG + chr4_3:45319344-45319363 Msa0642970:three_prime_UTR 30.0%
AGTACATGAATCACATCATT+TGG - chr4_3:45319391-45319410 None:intergenic 30.0%
! TCAGATATCTTGTTTGATCA+AGG - chr4_3:45319418-45319437 None:intergenic 30.0%
GTTGTGGTTTAATTCACATT+TGG + chr4_3:45319456-45319475 Msa0642970:three_prime_UTR 30.0%
!! TTGTTGGTGTTGTTGAATGT+TGG - chr4_3:45314384-45314403 None:intergenic 35.0%
TAGTTGGAACTTCTTCAACT+GGG - chr4_3:45314816-45314835 None:intergenic 35.0%
ATGTAAATGTTCCTATGGTG+AGG + chr4_3:45314872-45314891 Msa0642970:CDS 35.0%
!!! TGTTTCGCAGTTTGTTTTTG+CGG + chr4_3:45314945-45314964 Msa0642970:CDS 35.0%
TTGTAAGAATCTTGTGCCAT+TGG + chr4_3:45315112-45315131 Msa0642970:intron 35.0%
AGAGATTTGTCTCACACTAA+AGG + chr4_3:45315199-45315218 Msa0642970:intron 35.0%
GAGATTTGTCTCACACTAAA+GGG + chr4_3:45315200-45315219 Msa0642970:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr4_3:45315312-45315331 None:intergenic 35.0%
TTTAGTACAAATGGCCTGTT+TGG - chr4_3:45315592-45315611 None:intergenic 35.0%
TTAGGTAAGGGTGAATAGAA+AGG + chr4_3:45315707-45315726 Msa0642970:intron 35.0%
TAGGTAAGGGTGAATAGAAA+GGG + chr4_3:45315708-45315727 Msa0642970:intron 35.0%
! GAAGAGGTGTAAAGTGATAT+AGG + chr4_3:45315786-45315805 Msa0642970:intron 35.0%
! TTCAGGTTTCATCGTTAATC+TGG - chr4_3:45315961-45315980 None:intergenic 35.0%
TTCTTAGCACTCAGTATGAA+AGG + chr4_3:45316361-45316380 Msa0642970:intron 35.0%
! TAACTAACTAGCTCTTAGGA+GGG - chr4_3:45316404-45316423 None:intergenic 35.0%
!! TTGTTAAATAGTGGCTCTAG+TGG - chr4_3:45316786-45316805 None:intergenic 35.0%
TCATGAAAATTTCTGCCACA+TGG + chr4_3:45316931-45316950 Msa0642970:intron 35.0%
CATGAAAATTTCTGCCACAT+GGG + chr4_3:45316932-45316951 Msa0642970:intron 35.0%
GGGTATGGTATAAATATCAG+TGG + chr4_3:45316952-45316971 Msa0642970:intron 35.0%
GTATAAATATCAGTGGCATG+TGG + chr4_3:45316959-45316978 Msa0642970:intron 35.0%
TGCATGTTTATGCATGCTAA+TGG + chr4_3:45317170-45317189 Msa0642970:intron 35.0%
! ATGGATGGCTTCATTTTGTT+GGG - chr4_3:45317240-45317259 None:intergenic 35.0%
! ACATTACAACAGCTCCATTT+TGG - chr4_3:45317277-45317296 None:intergenic 35.0%
ATGTAAGACTACCTAAGGTA+TGG - chr4_3:45317349-45317368 None:intergenic 35.0%
GCTATGTGTATATAGCAATG+GGG + chr4_3:45317424-45317443 Msa0642970:intron 35.0%
CAGAGATATTTGAAAGACTC+TGG - chr4_3:45317494-45317513 None:intergenic 35.0%
CAGAGTCTTTCAAATATCTC+TGG + chr4_3:45317492-45317511 Msa0642970:intron 35.0%
CCAAAAGTTTGTATGGAGTA+TGG - chr4_3:45317541-45317560 None:intergenic 35.0%
! CCATACTCCATACAAACTTT+TGG + chr4_3:45317538-45317557 Msa0642970:intron 35.0%
TCTAGCCTAGATTTCTATTC+TGG + chr4_3:45317561-45317580 Msa0642970:intron 35.0%
CATGTATCAATCACCTAATG+CGG - chr4_3:45317610-45317629 None:intergenic 35.0%
!! GAAAATTGGCTTGTAGTGTA+AGG - chr4_3:45317670-45317689 None:intergenic 35.0%
! TACACTACAAGCCAATTTTC+TGG + chr4_3:45317670-45317689 Msa0642970:intron 35.0%
! ACACTACAAGCCAATTTTCT+GGG + chr4_3:45317671-45317690 Msa0642970:intron 35.0%
TTAACTCAACCCCAGAAAAT+TGG - chr4_3:45317684-45317703 None:intergenic 35.0%
! ACCCAACTCAAATTCTAAGA+TGG + chr4_3:45317704-45317723 Msa0642970:intron 35.0%
! GTATGTTGATTGTCCCATAT+TGG + chr4_3:45317819-45317838 Msa0642970:intron 35.0%
! ACATTTCTCACCTTTTGAAC+TGG + chr4_3:45317884-45317903 Msa0642970:intron 35.0%
!!! ACCTTTTGAACTGGTGTTAT+GGG + chr4_3:45317893-45317912 Msa0642970:intron 35.0%
GTTAGGCCTAACTAAAATTC+TGG + chr4_3:45317921-45317940 Msa0642970:intron 35.0%
! AGTAGTTCTATTTGGTACGA+AGG + chr4_3:45317969-45317988 Msa0642970:intron 35.0%
! GTAGTTCTATTTGGTACGAA+GGG + chr4_3:45317970-45317989 Msa0642970:intron 35.0%
! TAGTTCTATTTGGTACGAAG+GGG + chr4_3:45317971-45317990 Msa0642970:intron 35.0%
!!! AGACGGAAGTAAGACTTTTT+TGG - chr4_3:45318064-45318083 None:intergenic 35.0%
ACCATGATATACGTCAAAGA+CGG - chr4_3:45318081-45318100 None:intergenic 35.0%
! ATACCAAATGCTTTTAGGCA+TGG - chr4_3:45318281-45318300 None:intergenic 35.0%
CATTTGGTATTGTTGTATGG+AGG + chr4_3:45318291-45318310 Msa0642970:intron 35.0%
TTTGGTATTGTTGTATGGAG+GGG + chr4_3:45318293-45318312 Msa0642970:intron 35.0%
!! TAGACAATACCAGGTTTTGA+TGG + chr4_3:45318344-45318363 Msa0642970:intron 35.0%
ATATCAGAACCATCAAAACC+TGG - chr4_3:45318356-45318375 None:intergenic 35.0%
! ATACTAGCCTACACTGTTTA+GGG + chr4_3:45318386-45318405 Msa0642970:intron 35.0%
CAAATTACCCTAAACAGTGT+AGG - chr4_3:45318396-45318415 None:intergenic 35.0%
CAAAGATCGTCTTACCAAAA+TGG - chr4_3:45318837-45318856 None:intergenic 35.0%
AGTTCATTTACAATTGGCGA+TGG + chr4_3:45318875-45318894 Msa0642970:CDS 35.0%
GTTCATTTACAATTGGCGAT+GGG + chr4_3:45318876-45318895 Msa0642970:CDS 35.0%
TTCATTTACAATTGGCGATG+GGG + chr4_3:45318877-45318896 Msa0642970:CDS 35.0%
!! GTGCTCATTGATAATGATCT+TGG + chr4_3:45319121-45319140 Msa0642970:CDS 35.0%
CGTCATTTCTTCTTAACTTC+TGG + chr4_3:45319221-45319240 Msa0642970:CDS 35.0%
! TCTTCTTAACTTCTGGTCTT+TGG + chr4_3:45319228-45319247 Msa0642970:CDS 35.0%
TAAAAACAGTGTCACACACA+TGG + chr4_3:45319263-45319282 Msa0642970:three_prime_UTR 35.0%
!!! TAGGATTTTGGAATGTGTTG+TGG + chr4_3:45319440-45319459 Msa0642970:three_prime_UTR 35.0%
GTGGTTTAATTCACATTTGG+TGG + chr4_3:45319459-45319478 Msa0642970:three_prime_UTR 35.0%
! GTTTAATTCACATTTGGTGG+TGG + chr4_3:45319462-45319481 Msa0642970:three_prime_UTR 35.0%
CTCTCTCCAATTCTTCATCT+TGG + chr4_3:45314463-45314482 Msa0642970:five_prime_UTR 40.0%
GTAGTTGGAACTTCTTCAAC+TGG - chr4_3:45314817-45314836 None:intergenic 40.0%
GAAGAAGTTCCAACTACTGA+TGG + chr4_3:45314820-45314839 Msa0642970:CDS 40.0%
ATATCCTTCATCCTCACCAT+AGG - chr4_3:45314886-45314905 None:intergenic 40.0%
GTGAGGATGAAGGATATTCA+AGG + chr4_3:45314889-45314908 Msa0642970:CDS 40.0%
GACAGAAGGAAAATCACTAG+TGG - chr4_3:45314995-45315014 None:intergenic 40.0%
! GAATCTTGTGCCATTGGATT+TGG + chr4_3:45315118-45315137 Msa0642970:intron 40.0%
GACAACTTTGCCAAATCCAA+TGG - chr4_3:45315131-45315150 None:intergenic 40.0%
ATGTTGTCAATTGCAGATCG+TGG + chr4_3:45315231-45315250 Msa0642970:intron 40.0%
TTGCAGATCGTGGAAAATAG+CGG + chr4_3:45315241-45315260 Msa0642970:intron 40.0%
TCGGCTAGAGAATTAGGTAA+GGG + chr4_3:45315695-45315714 Msa0642970:intron 40.0%
GAGAAATACAAAGGGAGAAG+AGG + chr4_3:45315770-45315789 Msa0642970:intron 40.0%
AATTGTTCTACAGGATCTGC+TGG - chr4_3:45316002-45316021 None:intergenic 40.0%
TGTAATCACATGTGTCGTGT+TGG - chr4_3:45316136-45316155 None:intergenic 40.0%
CTGAGTGCTAAGAATTAGAG+AGG - chr4_3:45316355-45316374 None:intergenic 40.0%
! GTAACTAACTAGCTCTTAGG+AGG - chr4_3:45316405-45316424 None:intergenic 40.0%
GTTTCTGCCACATAGGTAAA+TGG + chr4_3:45316868-45316887 Msa0642970:intron 40.0%
AAATTTCTGCCACATGGGTA+TGG + chr4_3:45316937-45316956 Msa0642970:intron 40.0%
ATATCAGTGGCATGTGGATT+TGG + chr4_3:45316965-45316984 Msa0642970:intron 40.0%
! CATGGATGGCTTCATTTTGT+TGG - chr4_3:45317241-45317260 None:intergenic 40.0%
AAGCCATCCATGTCACTATT+TGG + chr4_3:45317249-45317268 Msa0642970:intron 40.0%
TTTGGCACCAAATAGTGACA+TGG - chr4_3:45317259-45317278 None:intergenic 40.0%
!! GTCACTATTTGGTGCCAAAA+TGG + chr4_3:45317260-45317279 Msa0642970:intron 40.0%
! TGCTTTGTTCTCCATACCTT+AGG + chr4_3:45317335-45317354 Msa0642970:intron 40.0%
GGCTAGACCAAAAGTTTGTA+TGG - chr4_3:45317548-45317567 None:intergenic 40.0%
! CCACTTACGGACATTTTTGT+AGG - chr4_3:45317634-45317653 None:intergenic 40.0%
CCTACAAAAATGTCCGTAAG+TGG + chr4_3:45317631-45317650 Msa0642970:intron 40.0%
! CACTACAAGCCAATTTTCTG+GGG + chr4_3:45317672-45317691 Msa0642970:intron 40.0%
! TAGCCTATCCAAGACTTGTT+AGG + chr4_3:45317732-45317751 Msa0642970:intron 40.0%
TAGCCTAACAAGTCTTGGAT+AGG - chr4_3:45317738-45317757 None:intergenic 40.0%
CAGATGTCCAATCATGTCTT+GGG + chr4_3:45317786-45317805 Msa0642970:intron 40.0%
!! CACCTTTTGAACTGGTGTTA+TGG + chr4_3:45317892-45317911 Msa0642970:intron 40.0%
!!! CCTTTTGAACTGGTGTTATG+GGG + chr4_3:45317894-45317913 Msa0642970:intron 40.0%
TCCGTCTTTGACGTATATCA+TGG + chr4_3:45318077-45318096 Msa0642970:intron 40.0%
CTTTGACGTATATCATGGTC+AGG + chr4_3:45318082-45318101 Msa0642970:intron 40.0%
CAGTGTAGGCTAGTATGTAT+TGG - chr4_3:45318382-45318401 None:intergenic 40.0%
! CATACTAGCCTACACTGTTT+AGG + chr4_3:45318385-45318404 Msa0642970:intron 40.0%
! TCGCTATTTCATTCACTCCT+AGG + chr4_3:45318942-45318961 Msa0642970:intron 40.0%
CCACTGTGTTCAGTTTGAAA+CGG + chr4_3:45319159-45319178 Msa0642970:CDS 40.0%
ACACATGGCAACAGAAACAA+GGG + chr4_3:45319278-45319297 Msa0642970:three_prime_UTR 40.0%
!! TGGTGGTGGAATGATTAAAC+AGG + chr4_3:45319476-45319495 Msa0642970:three_prime_UTR 40.0%
CAACTGGGTGAATTGAAGCA+TGG - chr4_3:45314801-45314820 None:intergenic 45.0%
GAAGTTCCAACTACTGATGG+TGG + chr4_3:45314823-45314842 Msa0642970:CDS 45.0%
TGTTCCTATGGTGAGGATGA+AGG + chr4_3:45314879-45314898 Msa0642970:CDS 45.0%
AAGGATATTCAAGGCATGCC+TGG + chr4_3:45314898-45314917 Msa0642970:CDS 45.0%
TGGCCAATCTTTGACAACAC+TGG + chr4_3:45315286-45315305 Msa0642970:intron 45.0%
AGGCCAGTGTTGTCAAAGAT+TGG - chr4_3:45315292-45315311 None:intergenic 45.0%
! TTTGACAACACTGGCCTGTT+TGG + chr4_3:45315295-45315314 Msa0642970:intron 45.0%
TATAGCACAAGCGCTTGTCA+TGG - chr4_3:45315547-45315566 None:intergenic 45.0%
GTGTTGCCAAATAGTGGCTA+TGG - chr4_3:45315675-45315694 None:intergenic 45.0%
AGCCACTATTTGGCAACACT+CGG + chr4_3:45315676-45315695 Msa0642970:intron 45.0%
CAACACTCGGCTAGAGAATT+AGG + chr4_3:45315689-45315708 Msa0642970:intron 45.0%
CTCGGCTAGAGAATTAGGTA+AGG + chr4_3:45315694-45315713 Msa0642970:intron 45.0%
CTTTCGGTCAGATTCTATCC+CGG - chr4_3:45316229-45316248 None:intergenic 45.0%
!! GCCAGACACGAGTTTGTTAA+GGG + chr4_3:45316462-45316481 Msa0642970:intron 45.0%
ACCCTTAACAAACTCGTGTC+TGG - chr4_3:45316466-45316485 None:intergenic 45.0%
TTGTTTCACGATGCGCTACT+TGG - chr4_3:45316818-45316837 None:intergenic 45.0%
GCACCAAATAGTGACATGGA+TGG - chr4_3:45317255-45317274 None:intergenic 45.0%
GTGTATATAGCAATGGGGTG+TGG + chr4_3:45317429-45317448 Msa0642970:intron 45.0%
TATATAGCAATGGGGTGTGG+AGG + chr4_3:45317432-45317451 Msa0642970:intron 45.0%
AAGCGTGTGGAAAGTTGGAA+AGG + chr4_3:45317456-45317475 Msa0642970:intron 45.0%
TGGAAAGTTGGAAAGGAAGC+AGG + chr4_3:45317463-45317482 Msa0642970:intron 45.0%
TGAGGGATGTCTTCCACTTA+CGG - chr4_3:45317647-45317666 None:intergenic 45.0%
! TGGCTTGTAGTGTAAGGTGA+GGG - chr4_3:45317664-45317683 None:intergenic 45.0%
!! TTGGCTTGTAGTGTAAGGTG+AGG - chr4_3:45317665-45317684 None:intergenic 45.0%
CTTGTTAGGCTACCCCTTAT+CGG + chr4_3:45317746-45317765 Msa0642970:intron 45.0%
CCAAGACATGATTGGACATC+TGG - chr4_3:45317788-45317807 None:intergenic 45.0%
CCAGATGTCCAATCATGTCT+TGG + chr4_3:45317785-45317804 Msa0642970:intron 45.0%
CAATCATGTCTTGGGTGCAA+GGG + chr4_3:45317794-45317813 Msa0642970:intron 45.0%
AATCATGTCTTGGGTGCAAG+GGG + chr4_3:45317795-45317814 Msa0642970:intron 45.0%
CCCCATAACACCAGTTCAAA+AGG - chr4_3:45317897-45317916 None:intergenic 45.0%
!! TGGTGTTATGGGGTTCAGTT+AGG + chr4_3:45317904-45317923 Msa0642970:intron 45.0%
CACATTCACGTGTTTCTCGT+GGG - chr4_3:45317999-45318018 None:intergenic 45.0%
ACACATTCACGTGTTTCTCG+TGG - chr4_3:45318000-45318019 None:intergenic 45.0%
!! GTGCCATGCCTAAAAGCATT+TGG + chr4_3:45318275-45318294 Msa0642970:intron 45.0%
ATGTCCACGTTATGAAGCCT+AGG - chr4_3:45318962-45318981 None:intergenic 45.0%
AGGCTTCATAACGTGGACAT+TGG + chr4_3:45318962-45318981 Msa0642970:intron 45.0%
CCGTTTCAAACTGAACACAG+TGG - chr4_3:45319162-45319181 None:intergenic 45.0%
! GTTCAGTTTGAAACGGCTAC+AGG + chr4_3:45319166-45319185 Msa0642970:CDS 45.0%
CACACATGGCAACAGAAACA+AGG + chr4_3:45319277-45319296 Msa0642970:three_prime_UTR 45.0%
!!! TTTTATGTATATAAATAAAA+GGG + chr4_3:45314588-45314607 Msa0642970:intron 5.0%
!!! TTAGTTTTTTTTTTTTTTTT+TGG - chr4_3:45316698-45316717 None:intergenic 5.0%
!! AAAAAAAAAAAAAACTAAAT+AGG + chr4_3:45316700-45316719 Msa0642970:intron 5.0%
!! AAAAAAAAAAAAACTAAATA+GGG + chr4_3:45316701-45316720 Msa0642970:intron 5.0%
!! GTTCCAACTACTGATGGTGG+TGG + chr4_3:45314826-45314845 Msa0642970:CDS 50.0%
CAAGGCATGCCTGGTACTAT+TGG + chr4_3:45314907-45314926 Msa0642970:CDS 50.0%
GAAAGGCCACCAATAGTACC+AGG - chr4_3:45314919-45314938 None:intergenic 50.0%
ACTGCGAAACACGCAGAGAA+AGG - chr4_3:45314936-45314955 None:intergenic 50.0%
GGCTGCTGCACTATCTGTTA+TGG + chr4_3:45314966-45314985 Msa0642970:CDS 50.0%
TTCCTTCTGTCACTGCCTTC+TGG + chr4_3:45315004-45315023 Msa0642970:CDS 50.0%
TACCAGAAGGCAGTGACAGA+AGG - chr4_3:45315009-45315028 None:intergenic 50.0%
! CAACACTGGCCTGTTTGGAT+TGG + chr4_3:45315300-45315319 Msa0642970:intron 50.0%
ACGCTGCCATAGCCACTATT+TGG + chr4_3:45315666-45315685 Msa0642970:intron 50.0%
! AGCCGAGTGTTGCCAAATAG+TGG - chr4_3:45315681-45315700 None:intergenic 50.0%
!! CATGTGTCGTGTTGGTGCTA+CGG - chr4_3:45316128-45316147 None:intergenic 50.0%
CAGATTCTATCCCGGAGACA+TGG - chr4_3:45316221-45316240 None:intergenic 50.0%
!! CGCCAGACACGAGTTTGTTA+AGG + chr4_3:45316461-45316480 Msa0642970:intron 50.0%
TTGTAAGAAGCCTGTGCCGT+TGG + chr4_3:45316573-45316592 Msa0642970:intron 50.0%
TTCACCAAATCCAACGGCAC+AGG - chr4_3:45316586-45316605 None:intergenic 50.0%
CATCTACCTGAGCTGCTGAA+AGG + chr4_3:45317377-45317396 Msa0642970:intron 50.0%
! GAGGAAAGCGTGTGGAAAGT+TGG + chr4_3:45317451-45317470 Msa0642970:intron 50.0%
AGGGGTAGCCTAACAAGTCT+TGG - chr4_3:45317743-45317762 None:intergenic 50.0%
!! TGACTGGATTGGCCGATAAG+GGG - chr4_3:45317761-45317780 None:intergenic 50.0%
!! GTGACTGGATTGGCCGATAA+GGG - chr4_3:45317762-45317781 None:intergenic 50.0%
! CATCTGGAACGTGACTGGAT+TGG - chr4_3:45317772-45317791 None:intergenic 50.0%
! TTGGACATCTGGAACGTGAC+TGG - chr4_3:45317777-45317796 None:intergenic 50.0%
CCTTGCACCCAAGACATGAT+TGG - chr4_3:45317796-45317815 None:intergenic 50.0%
CCAATCATGTCTTGGGTGCA+AGG + chr4_3:45317793-45317812 Msa0642970:intron 50.0%
CACTCCTAGGCTTCATAACG+TGG + chr4_3:45318955-45318974 Msa0642970:intron 50.0%
! GTTTGAAACGGCTACAGGCA+TGG + chr4_3:45319171-45319190 Msa0642970:CDS 50.0%
CAGGCATGGCATTCATATGC+TGG + chr4_3:45319185-45319204 Msa0642970:CDS 50.0%
! ACTTCTGGTCTTTGGCATCG+AGG + chr4_3:45319236-45319255 Msa0642970:CDS 50.0%
CACCAACAACTGCACTCTGC+AGG + chr4_3:45314395-45314414 Msa0642970:five_prime_UTR 55.0%
TGCCTGCAGAGTGCAGTTGT+TGG - chr4_3:45314400-45314419 None:intergenic 55.0%
CCACCACCACCATCAGTAGT+TGG - chr4_3:45314832-45314851 None:intergenic 55.0%
!! CCAACTACTGATGGTGGTGG+TGG + chr4_3:45314829-45314848 Msa0642970:CDS 55.0%
GGCATGCCTGGTACTATTGG+TGG + chr4_3:45314910-45314929 Msa0642970:CDS 55.0%
!! GTGTTGGTGCTACGGAGTGT+AGG - chr4_3:45316120-45316139 None:intergenic 55.0%
ACACCGGACATGACACTGAC+GGG - chr4_3:45316198-45316217 None:intergenic 55.0%
GACACCGGACATGACACTGA+CGG - chr4_3:45316199-45316218 None:intergenic 55.0%
ATGTCCGGTGTCCATGTCTC+CGG + chr4_3:45316207-45316226 Msa0642970:intron 55.0%
TATCCCGGAGACATGGACAC+CGG - chr4_3:45316214-45316233 None:intergenic 55.0%
! GAAGCCTGTGCCGTTGGATT+TGG + chr4_3:45316579-45316598 Msa0642970:intron 55.0%
GTGAGTCCTTTCAGCAGCTC+AGG - chr4_3:45317386-45317405 None:intergenic 55.0%
GTCGGTTGAGAGTCCGCATT+AGG + chr4_3:45317594-45317613 Msa0642970:intron 55.0%
!! CGTGACTGGATTGGCCGATA+AGG - chr4_3:45317763-45317782 None:intergenic 55.0%
AGTTTCCTTGTTGCGGCTGC+TGG + chr4_3:45318764-45318783 Msa0642970:intron 55.0%
!! CTGCTGGCTTGCAGACTTTG+TGG + chr4_3:45318780-45318799 Msa0642970:CDS 55.0%
TGCAGCAGCTTGTGCATCAG+CGG + chr4_3:45319090-45319109 Msa0642970:CDS 55.0%
ATGGCAGCGTTGCAGCGTAG+CGG - chr4_3:45315656-45315675 None:intergenic 60.0%
! TGACACTGACGGGTCGACAC+CGG - chr4_3:45316188-45316207 None:intergenic 60.0%
CGACCCGTCAGTGTCATGTC+CGG + chr4_3:45316192-45316211 Msa0642970:intron 60.0%
TGTCCGGTGTCCATGTCTCC+GGG + chr4_3:45316208-45316227 Msa0642970:intron 60.0%
GCAGCAGCTTGTGCATCAGC+GGG + chr4_3:45319091-45319110 Msa0642970:CDS 60.0%
! ACTGACGGGTCGACACCGGT+AGG - chr4_3:45316184-45316203 None:intergenic 65.0%
! GGGGTGTGGAGGAAAGCGTG+TGG + chr4_3:45317443-45317462 Msa0642970:intron 65.0%
GCAAGCCAGCAGCCGCAACA+AGG - chr4_3:45318772-45318791 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45314365 45319557 45314365 ID=Msa0642970;Name=Msa0642970
chr4_3 mRNA 45314365 45319557 45314365 ID=Msa0642970-mRNA-1;Parent=Msa0642970;Name=Msa0642970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|0.66|0.5|4|296|187
chr4_3 exon 45314365 45314484 45314365 ID=Msa0642970-mRNA-1:exon:10437;Parent=Msa0642970-mRNA-1
chr4_3 exon 45314716 45315025 45314716 ID=Msa0642970-mRNA-1:exon:10438;Parent=Msa0642970-mRNA-1
chr4_3 exon 45318766 45318898 45318766 ID=Msa0642970-mRNA-1:exon:10439;Parent=Msa0642970-mRNA-1
chr4_3 exon 45319070 45319557 45319070 ID=Msa0642970-mRNA-1:exon:10440;Parent=Msa0642970-mRNA-1
chr4_3 five_prime_UTR 45314365 45314484 45314365 ID=Msa0642970-mRNA-1:five_prime_utr;Parent=Msa0642970-mRNA-1
chr4_3 five_prime_UTR 45314716 45314786 45314716 ID=Msa0642970-mRNA-1:five_prime_utr;Parent=Msa0642970-mRNA-1
chr4_3 CDS 45314787 45315025 45314787 ID=Msa0642970-mRNA-1:cds;Parent=Msa0642970-mRNA-1
chr4_3 CDS 45318766 45318898 45318766 ID=Msa0642970-mRNA-1:cds;Parent=Msa0642970-mRNA-1
chr4_3 CDS 45319070 45319261 45319070 ID=Msa0642970-mRNA-1:cds;Parent=Msa0642970-mRNA-1
chr4_3 three_prime_UTR 45319262 45319557 45319262 ID=Msa0642970-mRNA-1:three_prime_utr;Parent=Msa0642970-mRNA-1
Gene Sequence

>Msa0642970

ATGAACGTTAGCCATGCTTCAATTCACCCAGTTGAAGAAGTTCCAACTACTGATGGTGGTGGTGGTGTTGCTGTTGCTGAACAAAATGTAAATGTTCCTATGGTGAGGATGAAGGATATTCAAGGCATGCCTGGTACTATTGGTGGCCTTTCTCTGCGTGTTTCGCAGTTTGTTTTTGCGGCTGCTGCACTATCTGTTATGGCTTCCACTAGTGATTTTCCTTCTGTCACTGCCTTCTGTTTCCTTGTTGCGGCTGCTGGCTTGCAGACTTTGTGGAGCATTGCATTAGCTATTACTGATGTTTATGCCATTTTGGTAAGACGATCTTTGCAGAACTACCGACTTGTCAGTTCATTTACAATTGGCGATGGGGTGACTTCGACGCTTATATTTGCAGCAGCTTGTGCATCAGCGGGCATAACAGTGCTCATTGATAATGATCTTGGTAATTGCTATGAGAACCACTGTGTTCAGTTTGAAACGGCTACAGGCATGGCATTCATATGCTGGTTCACGACAGTGCCGTCATTTCTTCTTAACTTCTGGTCTTTGGCATCGAGGTAA

Protein sequence

>Msa0642970

MNVSHASIHPVEEVPTTDGGGGVAVAEQNVNVPMVRMKDIQGMPGTIGGLSLRVSQFVFAAAALSVMASTSDFPSVTAFCFLVAAAGLQTLWSIALAITDVYAILVRRSLQNYRLVSSFTIGDGVTSTLIFAAACASAGITVLIDNDLGNCYENHCVQFETATGMAFICWFTTVPSFLLNFWSLASR*