Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914650 | XP_003619373.1 | 61.475 | 122 | 21 | 2 | 1 | 107 | 1 | 111 | 1.26e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914650 | sp|O03982|HIP39_ARATH | 50.704 | 71 | 19 | 2 | 1 | 55 | 1 | 71 | 5.38e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0888320 | Msa0914650 | 0.808620 | 2.832489e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914650 | MtrunA17_Chr6g0469681 | 61.475 | 122 | 21 | 2 | 1 | 107 | 1 | 111 | 1.16e-32 | 111 |
| Msa0914650 | MtrunA17_Chr6g0469651 | 59.829 | 117 | 27 | 2 | 1 | 102 | 1 | 112 | 1.04e-29 | 103 |
| Msa0914650 | MtrunA17_Chr6g0469671 | 59.483 | 116 | 23 | 2 | 1 | 101 | 1 | 107 | 3.81e-25 | 91.7 |
| Msa0914650 | MtrunA17_Chr7g0233201 | 51.220 | 82 | 25 | 1 | 1 | 67 | 1 | 82 | 9.28e-21 | 80.5 |
| Msa0914650 | MtrunA17_Chr7g0233191 | 51.220 | 82 | 25 | 1 | 1 | 67 | 1 | 82 | 1.12e-20 | 80.5 |
| Msa0914650 | MtrunA17_Chr6g0469571 | 50.442 | 113 | 26 | 3 | 1 | 98 | 1 | 98 | 1.29e-20 | 80.5 |
| Msa0914650 | MtrunA17_Chr7g0233251 | 52.439 | 82 | 24 | 1 | 1 | 67 | 1 | 82 | 1.33e-20 | 80.1 |
| Msa0914650 | MtrunA17_Chr7g0233181 | 50.000 | 82 | 26 | 1 | 1 | 67 | 1 | 82 | 4.26e-20 | 78.6 |
| Msa0914650 | MtrunA17_Chr6g0469551 | 49.558 | 113 | 27 | 3 | 1 | 98 | 1 | 98 | 4.65e-20 | 79.3 |
| Msa0914650 | MtrunA17_Chr6g0469591 | 50.442 | 113 | 26 | 3 | 1 | 98 | 1 | 98 | 4.96e-20 | 79.0 |
| Msa0914650 | MtrunA17_Chr6g0469541 | 39.516 | 124 | 35 | 3 | 1 | 105 | 1 | 103 | 5.16e-20 | 78.6 |
| Msa0914650 | MtrunA17_Chr1g0202581 | 56.522 | 69 | 16 | 1 | 1 | 55 | 1 | 69 | 5.69e-20 | 79.3 |
| Msa0914650 | MtrunA17_Chr7g0233231 | 50.000 | 82 | 26 | 1 | 1 | 67 | 1 | 82 | 7.14e-20 | 78.2 |
| Msa0914650 | MtrunA17_Chr1g0204291 | 53.623 | 69 | 18 | 1 | 1 | 55 | 1 | 69 | 3.54e-19 | 77.0 |
| Msa0914650 | MtrunA17_Chr7g0233211 | 48.780 | 82 | 27 | 1 | 1 | 67 | 1 | 82 | 4.28e-19 | 76.3 |
| Msa0914650 | MtrunA17_Chr8g0387471 | 36.842 | 133 | 54 | 3 | 1 | 118 | 1 | 118 | 6.31e-19 | 76.3 |
| Msa0914650 | MtrunA17_Chr1g0202541 | 54.286 | 70 | 17 | 1 | 1 | 55 | 1 | 70 | 1.67e-18 | 75.5 |
| Msa0914650 | MtrunA17_Chr1g0202561 | 55.556 | 72 | 17 | 1 | 1 | 57 | 1 | 72 | 1.41e-17 | 73.2 |
| Msa0914650 | MtrunA17_Chr1g0202501 | 47.059 | 68 | 21 | 1 | 1 | 53 | 1 | 68 | 1.14e-13 | 62.8 |
| Msa0914650 | MtrunA17_Chr7g0248671 | 47.059 | 68 | 21 | 1 | 1 | 53 | 1 | 68 | 2.04e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914650 | AT1G01490.1 | 50.704 | 71 | 19 | 2 | 1 | 55 | 1 | 71 | 5.47e-13 | 62.4 |
| Msa0914650 | AT1G01490.2 | 50.704 | 71 | 19 | 2 | 1 | 55 | 1 | 71 | 5.47e-13 | 62.4 |
| Msa0914650 | AT1G01490.4 | 49.275 | 69 | 19 | 2 | 3 | 55 | 30 | 98 | 1.56e-11 | 58.9 |
Find 18 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATTGAAATATTATTTA+TGG | 0.092295 | 6_2:+29358768 | Msa0914650:CDS |
| TCAATATATCTTAACAAATA+AGG | 0.215104 | 6_2:-29358754 | None:intergenic |
| GAAGGAGGAGCCAAAGAAAA+AGG | 0.237298 | 6_2:+29358660 | Msa0914650:CDS |
| GATAAGAAAATGACAATAAT+TGG | 0.247507 | 6_2:+29358505 | Msa0914650:CDS |
| ATGACAGAAACTAGTGTTAA+AGG | 0.285053 | 6_2:+29358010 | Msa0914650:intron |
| AACTTCGACACAACATTAAC+AGG | 0.307594 | 6_2:-29358538 | None:intergenic |
| TATCTTAACAAATAAGGATA+TGG | 0.344061 | 6_2:-29358748 | None:intergenic |
| AAAGGACACAAAAGATGAAT+TGG | 0.372542 | 6_2:+29358678 | Msa0914650:CDS |
| GAGACCAGATACCGTCTTCA+TGG | 0.381713 | 6_2:-29358066 | None:intergenic |
| TTAATGTTGTGTCGAAGTTA+AGG | 0.400464 | 6_2:+29358542 | Msa0914650:CDS |
| CATGCTGAAATAATTGCAAT+TGG | 0.461465 | 6_2:+29358574 | Msa0914650:CDS |
| TACAGTTGCTAAGGAAGGTC+AGG | 0.464456 | 6_2:-29357686 | None:intergenic |
| TCATATCGATTTGAAGCTAG+TGG | 0.498363 | 6_2:-29357711 | None:intergenic |
| TGAATTGGCTGATCTTATGA+AGG | 0.506423 | 6_2:+29358693 | Msa0914650:CDS |
| CTAGCTTCAAATCGATATGA+AGG | 0.515190 | 6_2:+29357714 | Msa0914650:exon |
| CTAGTGGGTTACAGTTGCTA+AGG | 0.551629 | 6_2:-29357695 | None:intergenic |
| CATATCGATTTGAAGCTAGT+GGG | 0.555444 | 6_2:-29357710 | None:intergenic |
| TGGGTTACAGTTGCTAAGGA+AGG | 0.623584 | 6_2:-29357691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAATTAAATCAAATA+TGG | - | chr6_2:29357838-29357857 | None:intergenic | 10.0% |
| !!! | TAAAATATTTCTTAAGTTTT+TGG | - | chr6_2:29358332-29358351 | None:intergenic | 10.0% |
| !!! | AAAAACTTAAGAAATATTTT+AGG | + | chr6_2:29358331-29358350 | Msa0914650:intron | 10.0% |
| !!! | AAAACTTAAGAAATATTTTA+GGG | + | chr6_2:29358332-29358351 | Msa0914650:intron | 10.0% |
| !!! | ATTTTTTATTTTTCTTTTTC+AGG | + | chr6_2:29358454-29358473 | Msa0914650:intron | 10.0% |
| !!! | TTTTTTATTTTTCTTTTTCA+GGG | + | chr6_2:29358455-29358474 | Msa0914650:intron | 10.0% |
| !! | TTGATAAATTAAATCAAATA+TGG | - | chr6_2:29357838-29357857 | None:intergenic | 10.0% |
| !!! | TAAAATATTTCTTAAGTTTT+TGG | - | chr6_2:29358332-29358351 | None:intergenic | 10.0% |
| !!! | AAAAACTTAAGAAATATTTT+AGG | + | chr6_2:29358331-29358350 | Msa0914650:intron | 10.0% |
| !!! | AAAACTTAAGAAATATTTTA+GGG | + | chr6_2:29358332-29358351 | Msa0914650:intron | 10.0% |
| !!! | ATTTTTTATTTTTCTTTTTC+AGG | + | chr6_2:29358454-29358473 | Msa0914650:intron | 10.0% |
| !!! | TTTTTTATTTTTCTTTTTCA+GGG | + | chr6_2:29358455-29358474 | Msa0914650:intron | 10.0% |
| !! | AATTAAATCAAATATGGAAA+GGG | - | chr6_2:29357832-29357851 | None:intergenic | 15.0% |
| !! | AAATTAAATCAAATATGGAA+AGG | - | chr6_2:29357833-29357852 | None:intergenic | 15.0% |
| !! | TGTAATTTAATAACTTAAAC+TGG | - | chr6_2:29357923-29357942 | None:intergenic | 15.0% |
| !!! | ATTTCATGTATGAAAATTTT+TGG | + | chr6_2:29358301-29358320 | Msa0914650:intron | 15.0% |
| !!! | AAACTTAAGAAATATTTTAG+GGG | + | chr6_2:29358333-29358352 | Msa0914650:intron | 15.0% |
| !!! | TTTTTATTTTTCTTTTTCAG+GGG | + | chr6_2:29358456-29358475 | Msa0914650:intron | 15.0% |
| !! | TCAATATATCTTAACAAATA+AGG | - | chr6_2:29358757-29358776 | None:intergenic | 15.0% |
| !! | AATTAAATCAAATATGGAAA+GGG | - | chr6_2:29357832-29357851 | None:intergenic | 15.0% |
| !! | AAATTAAATCAAATATGGAA+AGG | - | chr6_2:29357833-29357852 | None:intergenic | 15.0% |
| !! | TGTAATTTAATAACTTAAAC+TGG | - | chr6_2:29357923-29357942 | None:intergenic | 15.0% |
| !!! | ATTTCATGTATGAAAATTTT+TGG | + | chr6_2:29358301-29358320 | Msa0914650:intron | 15.0% |
| !!! | AAACTTAAGAAATATTTTAG+GGG | + | chr6_2:29358333-29358352 | Msa0914650:intron | 15.0% |
| !!! | TTTTTATTTTTCTTTTTCAG+GGG | + | chr6_2:29358456-29358475 | Msa0914650:intron | 15.0% |
| !! | TCAATATATCTTAACAAATA+AGG | - | chr6_2:29358757-29358776 | None:intergenic | 15.0% |
| !! | TAATAATTATGACAGAAAAC+TGG | - | chr6_2:29357765-29357784 | None:intergenic | 20.0% |
| !!! | AACTTAAGAAATATTTTAGG+GGG | + | chr6_2:29358334-29358353 | Msa0914650:intron | 20.0% |
| !!! | TATTCAACCTTTAAAAAGTT+AGG | + | chr6_2:29358397-29358416 | Msa0914650:intron | 20.0% |
| !!! | ATTCAACCTTTAAAAAGTTA+GGG | + | chr6_2:29358398-29358417 | Msa0914650:intron | 20.0% |
| !! | GATAAGAAAATGACAATAAT+TGG | + | chr6_2:29358505-29358524 | Msa0914650:CDS | 20.0% |
| !! | AAAGAAAGAAGAAAAAAAGA+AGG | + | chr6_2:29358642-29358661 | Msa0914650:CDS | 20.0% |
| !! | TATCTTAACAAATAAGGATA+TGG | - | chr6_2:29358751-29358770 | None:intergenic | 20.0% |
| !! | TAATAATTATGACAGAAAAC+TGG | - | chr6_2:29357765-29357784 | None:intergenic | 20.0% |
| !!! | AACTTAAGAAATATTTTAGG+GGG | + | chr6_2:29358334-29358353 | Msa0914650:intron | 20.0% |
| !!! | TATTCAACCTTTAAAAAGTT+AGG | + | chr6_2:29358397-29358416 | Msa0914650:intron | 20.0% |
| !!! | ATTCAACCTTTAAAAAGTTA+GGG | + | chr6_2:29358398-29358417 | Msa0914650:intron | 20.0% |
| !! | GATAAGAAAATGACAATAAT+TGG | + | chr6_2:29358505-29358524 | Msa0914650:CDS | 20.0% |
| !! | AAAGAAAGAAGAAAAAAAGA+AGG | + | chr6_2:29358642-29358661 | Msa0914650:CDS | 20.0% |
| !! | TATCTTAACAAATAAGGATA+TGG | - | chr6_2:29358751-29358770 | None:intergenic | 20.0% |
| ! | AAAGGGAAAAAATTGAGAAA+TGG | - | chr6_2:29357815-29357834 | None:intergenic | 25.0% |
| ! | TCTCAAATTGATTATTCCAA+AGG | - | chr6_2:29357966-29357985 | None:intergenic | 25.0% |
| ! | TGCATAAAATGATTAGATGT+TGG | - | chr6_2:29358106-29358125 | None:intergenic | 25.0% |
| ! | AAAGGGAAAAAATTGAGAAA+TGG | - | chr6_2:29357815-29357834 | None:intergenic | 25.0% |
| ! | TCTCAAATTGATTATTCCAA+AGG | - | chr6_2:29357966-29357985 | None:intergenic | 25.0% |
| ! | TGCATAAAATGATTAGATGT+TGG | - | chr6_2:29358106-29358125 | None:intergenic | 25.0% |
| AGAAAACTGGAAGGAAAAAA+AGG | - | chr6_2:29357752-29357771 | None:intergenic | 30.0% | |
| AATTATGACAGAAAACTGGA+AGG | - | chr6_2:29357761-29357780 | None:intergenic | 30.0% | |
| AAAGGCAAACTAAAAGAGAA+CGG | - | chr6_2:29357948-29357967 | None:intergenic | 30.0% | |
| ATGACAGAAACTAGTGTTAA+AGG | + | chr6_2:29358010-29358029 | Msa0914650:intron | 30.0% | |
| ! | ATCATTTTATGCAACATCTC+AGG | + | chr6_2:29358113-29358132 | Msa0914650:intron | 30.0% |
| ! | GAATTTTATACCTGAGATGT+TGG | - | chr6_2:29358148-29358167 | None:intergenic | 30.0% |
| ! | TTTCCTCCCTAACTTTTTAA+AGG | - | chr6_2:29358407-29358426 | None:intergenic | 30.0% |
| TAAAAAGTTAGGGAGGAAAA+AGG | + | chr6_2:29358408-29358427 | Msa0914650:intron | 30.0% | |
| TTAATGTTGTGTCGAAGTTA+AGG | + | chr6_2:29358542-29358561 | Msa0914650:CDS | 30.0% | |
| CATGCTGAAATAATTGCAAT+TGG | + | chr6_2:29358574-29358593 | Msa0914650:CDS | 30.0% | |
| !!! | TCTTTTTTCTCTTCTTTTGC+TGG | - | chr6_2:29358601-29358620 | None:intergenic | 30.0% |
| AGCAAAAGAAGAGAAAAAAG+AGG | + | chr6_2:29358600-29358619 | Msa0914650:CDS | 30.0% | |
| GAAAGAAGAAAAAAAGAAGG+AGG | + | chr6_2:29358645-29358664 | Msa0914650:CDS | 30.0% | |
| ! | TCTTTTGTGTCCTTTTTCTT+TGG | - | chr6_2:29358673-29358692 | None:intergenic | 30.0% |
| AAAGGACACAAAAGATGAAT+TGG | + | chr6_2:29358678-29358697 | Msa0914650:CDS | 30.0% | |
| AGAAAACTGGAAGGAAAAAA+AGG | - | chr6_2:29357752-29357771 | None:intergenic | 30.0% | |
| AATTATGACAGAAAACTGGA+AGG | - | chr6_2:29357761-29357780 | None:intergenic | 30.0% | |
| AAAGGCAAACTAAAAGAGAA+CGG | - | chr6_2:29357948-29357967 | None:intergenic | 30.0% | |
| ATGACAGAAACTAGTGTTAA+AGG | + | chr6_2:29358010-29358029 | Msa0914650:intron | 30.0% | |
| ! | ATCATTTTATGCAACATCTC+AGG | + | chr6_2:29358113-29358132 | Msa0914650:intron | 30.0% |
| ! | GAATTTTATACCTGAGATGT+TGG | - | chr6_2:29358148-29358167 | None:intergenic | 30.0% |
| ! | TTTCCTCCCTAACTTTTTAA+AGG | - | chr6_2:29358407-29358426 | None:intergenic | 30.0% |
| TAAAAAGTTAGGGAGGAAAA+AGG | + | chr6_2:29358408-29358427 | Msa0914650:intron | 30.0% | |
| TTAATGTTGTGTCGAAGTTA+AGG | + | chr6_2:29358542-29358561 | Msa0914650:CDS | 30.0% | |
| CATGCTGAAATAATTGCAAT+TGG | + | chr6_2:29358574-29358593 | Msa0914650:CDS | 30.0% | |
| !!! | TCTTTTTTCTCTTCTTTTGC+TGG | - | chr6_2:29358601-29358620 | None:intergenic | 30.0% |
| AGCAAAAGAAGAGAAAAAAG+AGG | + | chr6_2:29358600-29358619 | Msa0914650:CDS | 30.0% | |
| GAAAGAAGAAAAAAAGAAGG+AGG | + | chr6_2:29358645-29358664 | Msa0914650:CDS | 30.0% | |
| ! | TCTTTTGTGTCCTTTTTCTT+TGG | - | chr6_2:29358673-29358692 | None:intergenic | 30.0% |
| AAAGGACACAAAAGATGAAT+TGG | + | chr6_2:29358678-29358697 | Msa0914650:CDS | 30.0% | |
| !! | CATATCGATTTGAAGCTAGT+GGG | - | chr6_2:29357713-29357732 | None:intergenic | 35.0% |
| !! | TCATATCGATTTGAAGCTAG+TGG | - | chr6_2:29357714-29357733 | None:intergenic | 35.0% |
| CTAGCTTCAAATCGATATGA+AGG | + | chr6_2:29357714-29357733 | Msa0914650:exon | 35.0% | |
| CTTAAACTGGATCTCAAACT+CGG | - | chr6_2:29357910-29357929 | None:intergenic | 35.0% | |
| AAGGCAAACTAAAAGAGAAC+GGG | - | chr6_2:29357947-29357966 | None:intergenic | 35.0% | |
| !!! | GTTCTCTTTTAGTTTGCCTT+TGG | + | chr6_2:29357947-29357966 | Msa0914650:intron | 35.0% |
| CAAGAAAAAAGCCATGAAGA+CGG | + | chr6_2:29358055-29358074 | Msa0914650:CDS | 35.0% | |
| GTATGAAATTCCAACATCTC+AGG | + | chr6_2:29358135-29358154 | Msa0914650:intron | 35.0% | |
| ! | CAACCTTTAAAAAGTTAGGG+AGG | + | chr6_2:29358401-29358420 | Msa0914650:intron | 35.0% |
| !!! | TTTTTCTTTTTCAGGGGTTG+AGG | + | chr6_2:29358462-29358481 | Msa0914650:intron | 35.0% |
| AACTTCGACACAACATTAAC+AGG | - | chr6_2:29358541-29358560 | None:intergenic | 35.0% | |
| TGAATTGGCTGATCTTATGA+AGG | + | chr6_2:29358693-29358712 | Msa0914650:CDS | 35.0% | |
| !! | CATATCGATTTGAAGCTAGT+GGG | - | chr6_2:29357713-29357732 | None:intergenic | 35.0% |
| !! | TCATATCGATTTGAAGCTAG+TGG | - | chr6_2:29357714-29357733 | None:intergenic | 35.0% |
| CTAGCTTCAAATCGATATGA+AGG | + | chr6_2:29357714-29357733 | Msa0914650:exon | 35.0% | |
| CTTAAACTGGATCTCAAACT+CGG | - | chr6_2:29357910-29357929 | None:intergenic | 35.0% | |
| AAGGCAAACTAAAAGAGAAC+GGG | - | chr6_2:29357947-29357966 | None:intergenic | 35.0% | |
| !!! | GTTCTCTTTTAGTTTGCCTT+TGG | + | chr6_2:29357947-29357966 | Msa0914650:intron | 35.0% |
| CAAGAAAAAAGCCATGAAGA+CGG | + | chr6_2:29358055-29358074 | Msa0914650:CDS | 35.0% | |
| GTATGAAATTCCAACATCTC+AGG | + | chr6_2:29358135-29358154 | Msa0914650:intron | 35.0% | |
| ! | CAACCTTTAAAAAGTTAGGG+AGG | + | chr6_2:29358401-29358420 | Msa0914650:intron | 35.0% |
| !!! | TTTTTCTTTTTCAGGGGTTG+AGG | + | chr6_2:29358462-29358481 | Msa0914650:intron | 35.0% |
| AACTTCGACACAACATTAAC+AGG | - | chr6_2:29358541-29358560 | None:intergenic | 35.0% | |
| TGAATTGGCTGATCTTATGA+AGG | + | chr6_2:29358693-29358712 | Msa0914650:CDS | 35.0% | |
| ! | GGTTGTTTCATTGGACATGA+AGG | + | chr6_2:29358483-29358502 | Msa0914650:intron | 40.0% |
| ! | GGTTGTTTCATTGGACATGA+AGG | + | chr6_2:29358483-29358502 | Msa0914650:intron | 40.0% |
| TACAGTTGCTAAGGAAGGTC+AGG | - | chr6_2:29357689-29357708 | None:intergenic | 45.0% | |
| TGGGTTACAGTTGCTAAGGA+AGG | - | chr6_2:29357694-29357713 | None:intergenic | 45.0% | |
| !! | CTAGTGGGTTACAGTTGCTA+AGG | - | chr6_2:29357698-29357717 | None:intergenic | 45.0% |
| AAAGCCATGAAGACGGTATC+TGG | + | chr6_2:29358062-29358081 | Msa0914650:intron | 45.0% | |
| ! | AGGGGTTGAGGTTGTTTCAT+TGG | + | chr6_2:29358474-29358493 | Msa0914650:intron | 45.0% |
| GAAGGAGGAGCCAAAGAAAA+AGG | + | chr6_2:29358660-29358679 | Msa0914650:CDS | 45.0% | |
| TACAGTTGCTAAGGAAGGTC+AGG | - | chr6_2:29357689-29357708 | None:intergenic | 45.0% | |
| TGGGTTACAGTTGCTAAGGA+AGG | - | chr6_2:29357694-29357713 | None:intergenic | 45.0% | |
| !! | CTAGTGGGTTACAGTTGCTA+AGG | - | chr6_2:29357698-29357717 | None:intergenic | 45.0% |
| AAAGCCATGAAGACGGTATC+TGG | + | chr6_2:29358062-29358081 | Msa0914650:intron | 45.0% | |
| ! | AGGGGTTGAGGTTGTTTCAT+TGG | + | chr6_2:29358474-29358493 | Msa0914650:intron | 45.0% |
| GAAGGAGGAGCCAAAGAAAA+AGG | + | chr6_2:29358660-29358679 | Msa0914650:CDS | 45.0% | |
| !! | AAATTTATTAAAAAATACAA+AGG | + | chr6_2:29358245-29358264 | Msa0914650:intron | 5.0% |
| !! | ATATATTGAAATATTATTTA+TGG | + | chr6_2:29358768-29358787 | Msa0914650:CDS | 5.0% |
| !! | AAATTTATTAAAAAATACAA+AGG | + | chr6_2:29358245-29358264 | Msa0914650:intron | 5.0% |
| !! | ATATATTGAAATATTATTTA+TGG | + | chr6_2:29358768-29358787 | Msa0914650:CDS | 5.0% |
| GAGACCAGATACCGTCTTCA+TGG | - | chr6_2:29358069-29358088 | None:intergenic | 50.0% | |
| AAGACGGTATCTGGTCTCTC+AGG | + | chr6_2:29358071-29358090 | Msa0914650:intron | 50.0% | |
| GAGACCAGATACCGTCTTCA+TGG | - | chr6_2:29358069-29358088 | None:intergenic | 50.0% | |
| AAGACGGTATCTGGTCTCTC+AGG | + | chr6_2:29358071-29358090 | Msa0914650:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 29357679 | 29358807 | 29357679 | ID=Msa0914650;Name=Msa0914650 |
| chr6_2 | mRNA | 29357679 | 29358807 | 29357679 | ID=Msa0914650-mRNA-1;Parent=Msa0914650;Name=Msa0914650-mRNA-1;_AED=0.13;_eAED=0.23;_QI=51|0.5|0.33|1|0|0|3|0|122 |
| chr6_2 | exon | 29357679 | 29357735 | 29357679 | ID=Msa0914650-mRNA-1:exon:5310;Parent=Msa0914650-mRNA-1 |
| chr6_2 | exon | 29358017 | 29358076 | 29358017 | ID=Msa0914650-mRNA-1:exon:5311;Parent=Msa0914650-mRNA-1 |
| chr6_2 | exon | 29358505 | 29358807 | 29358505 | ID=Msa0914650-mRNA-1:exon:5312;Parent=Msa0914650-mRNA-1 |
| chr6_2 | five_prime_UTR | 29357679 | 29357729 | 29357679 | ID=Msa0914650-mRNA-1:five_prime_utr;Parent=Msa0914650-mRNA-1 |
| chr6_2 | CDS | 29357730 | 29357735 | 29357730 | ID=Msa0914650-mRNA-1:cds;Parent=Msa0914650-mRNA-1 |
| chr6_2 | CDS | 29358017 | 29358076 | 29358017 | ID=Msa0914650-mRNA-1:cds;Parent=Msa0914650-mRNA-1 |
| chr6_2 | CDS | 29358505 | 29358807 | 29358505 | ID=Msa0914650-mRNA-1:cds;Parent=Msa0914650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
