Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920010 | KEH16847.1 | 88.406 | 138 | 2 | 1 | 16 | 139 | 209 | 346 | 2.80e-79 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0920010 | Msa1391980 | 0.852318 | 4.993241e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCTGTCTTTAGTCTTT+AGG | 0.139002 | 6_2:-53401483 | Msa0920010:intron |
| ACCGAACGCGTTCGAGTTAT+TGG | 0.162538 | 6_2:+53401273 | None:intergenic |
| ATTTCTGTCTTTAGTCTTTA+GGG | 0.214411 | 6_2:-53401482 | Msa0920010:intron |
| ATGGCCGCGGCGATGGAATC+TGG | 0.262688 | 6_2:-53401040 | Msa0920010:CDS |
| TTGGCTGAGCCGTATCTTGC+TGG | 0.274191 | 6_2:-53401403 | Msa0920010:CDS |
| CGACTTCCCTCAGTTGGTTT+GGG | 0.288282 | 6_2:-53401545 | Msa0920010:CDS |
| TACTGATGGTTTGATTATCT+TGG | 0.294338 | 6_2:+53401111 | None:intergenic |
| GCGACTTCCCTCAGTTGGTT+TGG | 0.305998 | 6_2:-53401546 | Msa0920010:CDS |
| ATTCCATCGCCGCGGCCATC+TGG | 0.386063 | 6_2:+53401044 | None:intergenic |
| GCCAATAACTCGAACGCGTT+CGG | 0.430894 | 6_2:-53401274 | Msa0920010:CDS |
| CGGATGCGACTTCCCTCAGT+TGG | 0.432241 | 6_2:-53401551 | Msa0920010:CDS |
| GAACCAGATGGCCGCGGCGA+TGG | 0.481859 | 6_2:-53401047 | Msa0920010:CDS |
| TGATTATCTTGGACCCCGGT+CGG | 0.489242 | 6_2:+53401122 | None:intergenic |
| GGTGGGACCGAGAGCAAGAA+AGG | 0.489559 | 6_2:-53401381 | Msa0920010:CDS |
| TGGCTGAGCCGTATCTTGCT+GGG | 0.491654 | 6_2:-53401402 | Msa0920010:CDS |
| GACCGAGAGCAAGAAAGGAC+GGG | 0.491917 | 6_2:-53401376 | Msa0920010:CDS |
| GAGCGACTCATGAATGCTGC+CGG | 0.495040 | 6_2:-53401306 | Msa0920010:CDS |
| TGGCCGCGGCGATGGAATCT+GGG | 0.496216 | 6_2:-53401039 | Msa0920010:CDS |
| GGACCGAGAGCAAGAAAGGA+CGG | 0.512094 | 6_2:-53401377 | Msa0920010:CDS |
| GGCGATGGAATCTGGGACGG+AGG | 0.517778 | 6_2:-53401032 | Msa0920010:CDS |
| CTTCCCTCAGTTGGTTTGGG+TGG | 0.518982 | 6_2:-53401542 | Msa0920010:intron |
| ACTCATGAATGCTGCCGGGT+TGG | 0.526859 | 6_2:-53401301 | Msa0920010:CDS |
| AAACCAGAAGCACGACCGAC+CGG | 0.531516 | 6_2:-53401137 | Msa0920010:intron |
| GGTTTGATTATCTTGGACCC+CGG | 0.536721 | 6_2:+53401118 | None:intergenic |
| TACGTTACTACTGTTACTGA+TGG | 0.537925 | 6_2:+53401097 | None:intergenic |
| TGAGCCGTATCTTGCTGGGT+GGG | 0.552172 | 6_2:-53401398 | Msa0920010:CDS |
| AACCAGAAGCACGACCGACC+GGG | 0.555321 | 6_2:-53401136 | Msa0920010:intron |
| GCCGCGGCCATCTGGTTCAC+CGG | 0.557545 | 6_2:+53401052 | None:intergenic |
| ACCGAGAGCAAGAAAGGACG+GGG | 0.558920 | 6_2:-53401375 | Msa0920010:CDS |
| CGGTCCCACCCAGCAAGATA+CGG | 0.559998 | 6_2:+53401394 | None:intergenic |
| ACCAGAAGCACGACCGACCG+GGG | 0.579752 | 6_2:-53401135 | Msa0920010:intron |
| CGCGGCGATGGAATCTGGGA+CGG | 0.582286 | 6_2:-53401035 | Msa0920010:CDS |
| AGCGACTCATGAATGCTGCC+GGG | 0.590061 | 6_2:-53401305 | Msa0920010:CDS |
| ACCGGTGAACCAGATGGCCG+CGG | 0.591781 | 6_2:-53401053 | Msa0920010:CDS |
| AGTTATTGGCTCGTCCAACC+CGG | 0.599786 | 6_2:+53401287 | None:intergenic |
| CCGAGAGCAAGAAAGGACGG+GGG | 0.605735 | 6_2:-53401374 | Msa0920010:CDS |
| TATACCACCCAAACCAACTG+AGG | 0.612028 | 6_2:+53401538 | None:intergenic |
| TCGCTCGTTCAACTATCCCT+CGG | 0.616160 | 6_2:+53401323 | None:intergenic |
| GGTAGTACCGGTGAACCAGA+TGG | 0.617400 | 6_2:-53401059 | Msa0920010:CDS |
| TCAACTATCCCTCGGAGACA+CGG | 0.620823 | 6_2:+53401331 | None:intergenic |
| GACACGGTCGAGAACATGCA+TGG | 0.621948 | 6_2:+53401347 | None:intergenic |
| CGAGAGCAAGAAAGGACGGG+GGG | 0.629548 | 6_2:-53401373 | Msa0920010:CDS |
| TGTAGGTGCTTGCGATGGGG+CGG | 0.629996 | 6_2:-53401571 | None:intergenic |
| TGTTCTCGACCGTGTCTCCG+AGG | 0.638053 | 6_2:-53401340 | Msa0920010:CDS |
| CTGAGCCGTATCTTGCTGGG+TGG | 0.641566 | 6_2:-53401399 | Msa0920010:CDS |
| GTTCTCGACCGTGTCTCCGA+GGG | 0.641612 | 6_2:-53401339 | Msa0920010:CDS |
| ATACCACCCAAACCAACTGA+GGG | 0.681938 | 6_2:+53401539 | None:intergenic |
| CGTCCCAGATTCCATCGCCG+CGG | 0.737524 | 6_2:+53401036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGACTTTACTAAAAAAATA+AGG | - | chr6_2:53401120-53401139 | Msa0920010:CDS | 15.0% |
| !! | TTGACTTTACTAAAAAAATA+AGG | - | chr6_2:53401120-53401139 | Msa0920010:CDS | 15.0% |
| !! | ACAGAAATGGATAAAAAAAA+GGG | + | chr6_2:53401076-53401095 | None:intergenic | 20.0% |
| !! | ACAGAAATGGATAAAAAAAA+GGG | + | chr6_2:53401076-53401095 | None:intergenic | 20.0% |
| ! | AGAAATGGATAAAAAAAAGG+GGG | + | chr6_2:53401074-53401093 | None:intergenic | 25.0% |
| ! | CAGAAATGGATAAAAAAAAG+GGG | + | chr6_2:53401075-53401094 | None:intergenic | 25.0% |
| ! | GACAGAAATGGATAAAAAAA+AGG | + | chr6_2:53401077-53401096 | None:intergenic | 25.0% |
| !! | ATTTCTGTCTTTAGTCTTTA+GGG | - | chr6_2:53401088-53401107 | Msa0920010:CDS | 25.0% |
| !!! | TTTTTAGTAAAGTCAAGCTT+TGG | + | chr6_2:53401116-53401135 | None:intergenic | 25.0% |
| ! | TGATCATATCAATATGATGA+TGG | - | chr6_2:53401404-53401423 | Msa0920010:CDS | 25.0% |
| ! | GATCATATCAATATGATGAT+GGG | - | chr6_2:53401405-53401424 | Msa0920010:CDS | 25.0% |
| ! | AGAAATGGATAAAAAAAAGG+GGG | + | chr6_2:53401074-53401093 | None:intergenic | 25.0% |
| ! | CAGAAATGGATAAAAAAAAG+GGG | + | chr6_2:53401075-53401094 | None:intergenic | 25.0% |
| ! | GACAGAAATGGATAAAAAAA+AGG | + | chr6_2:53401077-53401096 | None:intergenic | 25.0% |
| !! | ATTTCTGTCTTTAGTCTTTA+GGG | - | chr6_2:53401088-53401107 | Msa0920010:CDS | 25.0% |
| !!! | TTTTTAGTAAAGTCAAGCTT+TGG | + | chr6_2:53401116-53401135 | None:intergenic | 25.0% |
| ! | TGATCATATCAATATGATGA+TGG | - | chr6_2:53401404-53401423 | Msa0920010:CDS | 25.0% |
| ! | GATCATATCAATATGATGAT+GGG | - | chr6_2:53401405-53401424 | Msa0920010:CDS | 25.0% |
| GAAATGGATAAAAAAAAGGG+GGG | + | chr6_2:53401073-53401092 | None:intergenic | 30.0% | |
| CTAAAGACTAAAGACAGAAA+TGG | + | chr6_2:53401089-53401108 | None:intergenic | 30.0% | |
| ! | CATTTCTGTCTTTAGTCTTT+AGG | - | chr6_2:53401087-53401106 | Msa0920010:CDS | 30.0% |
| !! | TATCAATATGATGATGGGAA+TGG | - | chr6_2:53401410-53401429 | Msa0920010:CDS | 30.0% |
| TACTGATGGTTTGATTATCT+TGG | + | chr6_2:53401462-53401481 | None:intergenic | 30.0% | |
| GAAATGGATAAAAAAAAGGG+GGG | + | chr6_2:53401073-53401092 | None:intergenic | 30.0% | |
| CTAAAGACTAAAGACAGAAA+TGG | + | chr6_2:53401089-53401108 | None:intergenic | 30.0% | |
| ! | CATTTCTGTCTTTAGTCTTT+AGG | - | chr6_2:53401087-53401106 | Msa0920010:CDS | 30.0% |
| !! | TATCAATATGATGATGGGAA+TGG | - | chr6_2:53401410-53401429 | Msa0920010:CDS | 30.0% |
| TACTGATGGTTTGATTATCT+TGG | + | chr6_2:53401462-53401481 | None:intergenic | 30.0% | |
| TACGTTACTACTGTTACTGA+TGG | + | chr6_2:53401476-53401495 | None:intergenic | 35.0% | |
| ! | AACGTAAGCATGAGACTTTT+TGG | - | chr6_2:53401490-53401509 | Msa0920010:intron | 35.0% |
| !! | ATGAGACTTTTTGGTAGTAC+CGG | - | chr6_2:53401499-53401518 | Msa0920010:intron | 35.0% |
| TACGTTACTACTGTTACTGA+TGG | + | chr6_2:53401476-53401495 | None:intergenic | 35.0% | |
| ! | AACGTAAGCATGAGACTTTT+TGG | - | chr6_2:53401490-53401509 | Msa0920010:intron | 35.0% |
| !! | ATGAGACTTTTTGGTAGTAC+CGG | - | chr6_2:53401499-53401518 | Msa0920010:intron | 35.0% |
| ACCTTACCTTCACCATGATA+CGG | - | chr6_2:53401348-53401367 | Msa0920010:CDS | 40.0% | |
| ATACGGACTCCAAGTTCTTA+TGG | - | chr6_2:53401365-53401384 | Msa0920010:CDS | 40.0% | |
| ACCTTACCTTCACCATGATA+CGG | - | chr6_2:53401348-53401367 | Msa0920010:CDS | 40.0% | |
| ATACGGACTCCAAGTTCTTA+TGG | - | chr6_2:53401365-53401384 | Msa0920010:CDS | 40.0% | |
| ATACCACCCAAACCAACTGA+GGG | + | chr6_2:53401034-53401053 | None:intergenic | 45.0% | |
| TATACCACCCAAACCAACTG+AGG | + | chr6_2:53401035-53401054 | None:intergenic | 45.0% | |
| TAAAAAAATAAGGCCCGCGC+AGG | - | chr6_2:53401130-53401149 | Msa0920010:CDS | 45.0% | |
| AAAAAAATAAGGCCCGCGCA+GGG | - | chr6_2:53401131-53401150 | Msa0920010:CDS | 45.0% | |
| TCCGTATCATGGTGAAGGTA+AGG | + | chr6_2:53401352-53401371 | None:intergenic | 45.0% | |
| AGAACTTGGAGTCCGTATCA+TGG | + | chr6_2:53401363-53401382 | None:intergenic | 45.0% | |
| GGTTTGATTATCTTGGACCC+CGG | + | chr6_2:53401455-53401474 | None:intergenic | 45.0% | |
| ATACCACCCAAACCAACTGA+GGG | + | chr6_2:53401034-53401053 | None:intergenic | 45.0% | |
| TATACCACCCAAACCAACTG+AGG | + | chr6_2:53401035-53401054 | None:intergenic | 45.0% | |
| TAAAAAAATAAGGCCCGCGC+AGG | - | chr6_2:53401130-53401149 | Msa0920010:CDS | 45.0% | |
| AAAAAAATAAGGCCCGCGCA+GGG | - | chr6_2:53401131-53401150 | Msa0920010:CDS | 45.0% | |
| TCCGTATCATGGTGAAGGTA+AGG | + | chr6_2:53401352-53401371 | None:intergenic | 45.0% | |
| AGAACTTGGAGTCCGTATCA+TGG | + | chr6_2:53401363-53401382 | None:intergenic | 45.0% | |
| GGTTTGATTATCTTGGACCC+CGG | + | chr6_2:53401455-53401474 | None:intergenic | 45.0% | |
| ! | CGACTTCCCTCAGTTGGTTT+GGG | - | chr6_2:53401025-53401044 | Msa0920010:CDS | 50.0% |
| AAAAGGGGGGACTTCTGCAA+CGG | + | chr6_2:53401060-53401079 | None:intergenic | 50.0% | |
| AAAAAATAAGGCCCGCGCAG+GGG | - | chr6_2:53401132-53401151 | Msa0920010:CDS | 50.0% | |
| TCAACTATCCCTCGGAGACA+CGG | + | chr6_2:53401242-53401261 | None:intergenic | 50.0% | |
| TCGCTCGTTCAACTATCCCT+CGG | + | chr6_2:53401250-53401269 | None:intergenic | 50.0% | |
| !! | AGTTATTGGCTCGTCCAACC+CGG | + | chr6_2:53401286-53401305 | None:intergenic | 50.0% |
| GCCAATAACTCGAACGCGTT+CGG | - | chr6_2:53401296-53401315 | Msa0920010:CDS | 50.0% | |
| ! | ACCGAACGCGTTCGAGTTAT+TGG | + | chr6_2:53401300-53401319 | None:intergenic | 50.0% |
| TGGAGTCCGTATCATGGTGA+AGG | + | chr6_2:53401357-53401376 | None:intergenic | 50.0% | |
| TGATTATCTTGGACCCCGGT+CGG | + | chr6_2:53401451-53401470 | None:intergenic | 50.0% | |
| ! | CGACTTCCCTCAGTTGGTTT+GGG | - | chr6_2:53401025-53401044 | Msa0920010:CDS | 50.0% |
| AAAAGGGGGGACTTCTGCAA+CGG | + | chr6_2:53401060-53401079 | None:intergenic | 50.0% | |
| AAAAAATAAGGCCCGCGCAG+GGG | - | chr6_2:53401132-53401151 | Msa0920010:CDS | 50.0% | |
| TCAACTATCCCTCGGAGACA+CGG | + | chr6_2:53401242-53401261 | None:intergenic | 50.0% | |
| TCGCTCGTTCAACTATCCCT+CGG | + | chr6_2:53401250-53401269 | None:intergenic | 50.0% | |
| !! | AGTTATTGGCTCGTCCAACC+CGG | + | chr6_2:53401286-53401305 | None:intergenic | 50.0% |
| GCCAATAACTCGAACGCGTT+CGG | - | chr6_2:53401296-53401315 | Msa0920010:CDS | 50.0% | |
| ! | ACCGAACGCGTTCGAGTTAT+TGG | + | chr6_2:53401300-53401319 | None:intergenic | 50.0% |
| TGGAGTCCGTATCATGGTGA+AGG | + | chr6_2:53401357-53401376 | None:intergenic | 50.0% | |
| TGATTATCTTGGACCCCGGT+CGG | + | chr6_2:53401451-53401470 | None:intergenic | 50.0% | |
| GCGACTTCCCTCAGTTGGTT+TGG | - | chr6_2:53401024-53401043 | Msa0920010:CDS | 55.0% | |
| !! | CTTCCCTCAGTTGGTTTGGG+TGG | - | chr6_2:53401028-53401047 | Msa0920010:CDS | 55.0% |
| AAAGGGGGGACTTCTGCAAC+GGG | + | chr6_2:53401059-53401078 | None:intergenic | 55.0% | |
| TTGGCTGAGCCGTATCTTGC+TGG | - | chr6_2:53401167-53401186 | Msa0920010:intron | 55.0% | |
| TGGCTGAGCCGTATCTTGCT+GGG | - | chr6_2:53401168-53401187 | Msa0920010:intron | 55.0% | |
| TGAGCCGTATCTTGCTGGGT+GGG | - | chr6_2:53401172-53401191 | Msa0920010:intron | 55.0% | |
| GGACCGAGAGCAAGAAAGGA+CGG | - | chr6_2:53401193-53401212 | Msa0920010:intron | 55.0% | |
| GACCGAGAGCAAGAAAGGAC+GGG | - | chr6_2:53401194-53401213 | Msa0920010:intron | 55.0% | |
| ACCGAGAGCAAGAAAGGACG+GGG | - | chr6_2:53401195-53401214 | Msa0920010:intron | 55.0% | |
| GACACGGTCGAGAACATGCA+TGG | + | chr6_2:53401226-53401245 | None:intergenic | 55.0% | |
| GAGCGACTCATGAATGCTGC+CGG | - | chr6_2:53401264-53401283 | Msa0920010:CDS | 55.0% | |
| AGCGACTCATGAATGCTGCC+GGG | - | chr6_2:53401265-53401284 | Msa0920010:CDS | 55.0% | |
| ACTCATGAATGCTGCCGGGT+TGG | - | chr6_2:53401269-53401288 | Msa0920010:CDS | 55.0% | |
| CGCGCTCTGCCATAAGAACT+TGG | + | chr6_2:53401377-53401396 | None:intergenic | 55.0% | |
| AGTTCTTATGGCAGAGCGCG+AGG | - | chr6_2:53401377-53401396 | Msa0920010:CDS | 55.0% | |
| ! | AAACCAGAAGCACGACCGAC+CGG | - | chr6_2:53401433-53401452 | Msa0920010:CDS | 55.0% |
| !! | GGTAGTACCGGTGAACCAGA+TGG | - | chr6_2:53401511-53401530 | Msa0920010:intron | 55.0% |
| GCGACTTCCCTCAGTTGGTT+TGG | - | chr6_2:53401024-53401043 | Msa0920010:CDS | 55.0% | |
| !! | CTTCCCTCAGTTGGTTTGGG+TGG | - | chr6_2:53401028-53401047 | Msa0920010:CDS | 55.0% |
| AAAGGGGGGACTTCTGCAAC+GGG | + | chr6_2:53401059-53401078 | None:intergenic | 55.0% | |
| TTGGCTGAGCCGTATCTTGC+TGG | - | chr6_2:53401167-53401186 | Msa0920010:intron | 55.0% | |
| TGGCTGAGCCGTATCTTGCT+GGG | - | chr6_2:53401168-53401187 | Msa0920010:intron | 55.0% | |
| TGAGCCGTATCTTGCTGGGT+GGG | - | chr6_2:53401172-53401191 | Msa0920010:intron | 55.0% | |
| GGACCGAGAGCAAGAAAGGA+CGG | - | chr6_2:53401193-53401212 | Msa0920010:intron | 55.0% | |
| GACCGAGAGCAAGAAAGGAC+GGG | - | chr6_2:53401194-53401213 | Msa0920010:intron | 55.0% | |
| ACCGAGAGCAAGAAAGGACG+GGG | - | chr6_2:53401195-53401214 | Msa0920010:intron | 55.0% | |
| GACACGGTCGAGAACATGCA+TGG | + | chr6_2:53401226-53401245 | None:intergenic | 55.0% | |
| GAGCGACTCATGAATGCTGC+CGG | - | chr6_2:53401264-53401283 | Msa0920010:CDS | 55.0% | |
| AGCGACTCATGAATGCTGCC+GGG | - | chr6_2:53401265-53401284 | Msa0920010:CDS | 55.0% | |
| ACTCATGAATGCTGCCGGGT+TGG | - | chr6_2:53401269-53401288 | Msa0920010:CDS | 55.0% | |
| CGCGCTCTGCCATAAGAACT+TGG | + | chr6_2:53401377-53401396 | None:intergenic | 55.0% | |
| AGTTCTTATGGCAGAGCGCG+AGG | - | chr6_2:53401377-53401396 | Msa0920010:CDS | 55.0% | |
| ! | AAACCAGAAGCACGACCGAC+CGG | - | chr6_2:53401433-53401452 | Msa0920010:CDS | 55.0% |
| !! | GGTAGTACCGGTGAACCAGA+TGG | - | chr6_2:53401511-53401530 | Msa0920010:intron | 55.0% |
| CGGATGCGACTTCCCTCAGT+TGG | - | chr6_2:53401019-53401038 | Msa0920010:CDS | 60.0% | |
| !!! | GCAGGGGCGCTCACGTTTTT+TGG | - | chr6_2:53401148-53401167 | Msa0920010:intron | 60.0% |
| CTGAGCCGTATCTTGCTGGG+TGG | - | chr6_2:53401171-53401190 | Msa0920010:intron | 60.0% | |
| CGGTCCCACCCAGCAAGATA+CGG | + | chr6_2:53401179-53401198 | None:intergenic | 60.0% | |
| GGTGGGACCGAGAGCAAGAA+AGG | - | chr6_2:53401189-53401208 | Msa0920010:intron | 60.0% | |
| CCCCCGTCCTTTCTTGCTCT+CGG | + | chr6_2:53401199-53401218 | None:intergenic | 60.0% | |
| CCGAGAGCAAGAAAGGACGG+GGG | - | chr6_2:53401196-53401215 | Msa0920010:intron | 60.0% | |
| CGAGAGCAAGAAAGGACGGG+GGG | - | chr6_2:53401197-53401216 | Msa0920010:intron | 60.0% | |
| TGTTCTCGACCGTGTCTCCG+AGG | - | chr6_2:53401230-53401249 | Msa0920010:intron | 60.0% | |
| GTTCTCGACCGTGTCTCCGA+GGG | - | chr6_2:53401231-53401250 | Msa0920010:intron | 60.0% | |
| ! | AACCAGAAGCACGACCGACC+GGG | - | chr6_2:53401434-53401453 | Msa0920010:CDS | 60.0% |
| CGGATGCGACTTCCCTCAGT+TGG | - | chr6_2:53401019-53401038 | Msa0920010:CDS | 60.0% | |
| !!! | GCAGGGGCGCTCACGTTTTT+TGG | - | chr6_2:53401148-53401167 | Msa0920010:intron | 60.0% |
| CTGAGCCGTATCTTGCTGGG+TGG | - | chr6_2:53401171-53401190 | Msa0920010:intron | 60.0% | |
| CGGTCCCACCCAGCAAGATA+CGG | + | chr6_2:53401179-53401198 | None:intergenic | 60.0% | |
| GGTGGGACCGAGAGCAAGAA+AGG | - | chr6_2:53401189-53401208 | Msa0920010:intron | 60.0% | |
| CCCCCGTCCTTTCTTGCTCT+CGG | + | chr6_2:53401199-53401218 | None:intergenic | 60.0% | |
| CCGAGAGCAAGAAAGGACGG+GGG | - | chr6_2:53401196-53401215 | Msa0920010:intron | 60.0% | |
| CGAGAGCAAGAAAGGACGGG+GGG | - | chr6_2:53401197-53401216 | Msa0920010:intron | 60.0% | |
| TGTTCTCGACCGTGTCTCCG+AGG | - | chr6_2:53401230-53401249 | Msa0920010:intron | 60.0% | |
| GTTCTCGACCGTGTCTCCGA+GGG | - | chr6_2:53401231-53401250 | Msa0920010:intron | 60.0% | |
| ! | AACCAGAAGCACGACCGACC+GGG | - | chr6_2:53401434-53401453 | Msa0920010:CDS | 60.0% |
| AAAACGTGAGCGCCCCTGCG+CGG | + | chr6_2:53401147-53401166 | None:intergenic | 65.0% | |
| ! | ACCAGAAGCACGACCGACCG+GGG | - | chr6_2:53401435-53401454 | Msa0920010:CDS | 65.0% |
| ACCGGTGAACCAGATGGCCG+CGG | - | chr6_2:53401517-53401536 | Msa0920010:intron | 65.0% | |
| ATTCCATCGCCGCGGCCATC+TGG | + | chr6_2:53401529-53401548 | None:intergenic | 65.0% | |
| ATGGCCGCGGCGATGGAATC+TGG | - | chr6_2:53401530-53401549 | Msa0920010:intron | 65.0% | |
| TGGCCGCGGCGATGGAATCT+GGG | - | chr6_2:53401531-53401550 | Msa0920010:intron | 65.0% | |
| CGTCCCAGATTCCATCGCCG+CGG | + | chr6_2:53401537-53401556 | None:intergenic | 65.0% | |
| CGCGGCGATGGAATCTGGGA+CGG | - | chr6_2:53401535-53401554 | Msa0920010:intron | 65.0% | |
| ! | GGCGATGGAATCTGGGACGG+AGG | - | chr6_2:53401538-53401557 | Msa0920010:intron | 65.0% |
| AAAACGTGAGCGCCCCTGCG+CGG | + | chr6_2:53401147-53401166 | None:intergenic | 65.0% | |
| ! | ACCAGAAGCACGACCGACCG+GGG | - | chr6_2:53401435-53401454 | Msa0920010:CDS | 65.0% |
| ACCGGTGAACCAGATGGCCG+CGG | - | chr6_2:53401517-53401536 | Msa0920010:intron | 65.0% | |
| ATTCCATCGCCGCGGCCATC+TGG | + | chr6_2:53401529-53401548 | None:intergenic | 65.0% | |
| ATGGCCGCGGCGATGGAATC+TGG | - | chr6_2:53401530-53401549 | Msa0920010:intron | 65.0% | |
| TGGCCGCGGCGATGGAATCT+GGG | - | chr6_2:53401531-53401550 | Msa0920010:intron | 65.0% | |
| CGTCCCAGATTCCATCGCCG+CGG | + | chr6_2:53401537-53401556 | None:intergenic | 65.0% | |
| CGCGGCGATGGAATCTGGGA+CGG | - | chr6_2:53401535-53401554 | Msa0920010:intron | 65.0% | |
| ! | GGCGATGGAATCTGGGACGG+AGG | - | chr6_2:53401538-53401557 | Msa0920010:intron | 65.0% |
| AAACGTGAGCGCCCCTGCGC+GGG | + | chr6_2:53401146-53401165 | None:intergenic | 70.0% | |
| ACCCCGGTCGGTCGTGCTTC+TGG | + | chr6_2:53401439-53401458 | None:intergenic | 70.0% | |
| ! | GCCGCGGCCATCTGGTTCAC+CGG | + | chr6_2:53401521-53401540 | None:intergenic | 70.0% |
| GAACCAGATGGCCGCGGCGA+TGG | - | chr6_2:53401523-53401542 | Msa0920010:intron | 70.0% | |
| AAACGTGAGCGCCCCTGCGC+GGG | + | chr6_2:53401146-53401165 | None:intergenic | 70.0% | |
| ACCCCGGTCGGTCGTGCTTC+TGG | + | chr6_2:53401439-53401458 | None:intergenic | 70.0% | |
| ! | GCCGCGGCCATCTGGTTCAC+CGG | + | chr6_2:53401521-53401540 | None:intergenic | 70.0% |
| GAACCAGATGGCCGCGGCGA+TGG | - | chr6_2:53401523-53401542 | Msa0920010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 53401013 | 53401579 | 53401013 | ID=Msa0920010;Name=Msa0920010 |
| chr6_2 | mRNA | 53401013 | 53401579 | 53401013 | ID=Msa0920010-mRNA-1;Parent=Msa0920010;Name=Msa0920010-mRNA-1;_AED=0.41;_eAED=0.47;_QI=0|0|0|1|0.5|0|3|0|139 |
| chr6_2 | exon | 53401543 | 53401579 | 53401543 | ID=Msa0920010-mRNA-1:exon:7992;Parent=Msa0920010-mRNA-1 |
| chr6_2 | exon | 53401248 | 53401490 | 53401248 | ID=Msa0920010-mRNA-1:exon:7991;Parent=Msa0920010-mRNA-1 |
| chr6_2 | exon | 53401013 | 53401152 | 53401013 | ID=Msa0920010-mRNA-1:exon:7990;Parent=Msa0920010-mRNA-1 |
| chr6_2 | CDS | 53401543 | 53401579 | 53401543 | ID=Msa0920010-mRNA-1:cds;Parent=Msa0920010-mRNA-1 |
| chr6_2 | CDS | 53401248 | 53401490 | 53401248 | ID=Msa0920010-mRNA-1:cds;Parent=Msa0920010-mRNA-1 |
| chr6_2 | CDS | 53401013 | 53401152 | 53401013 | ID=Msa0920010-mRNA-1:cds;Parent=Msa0920010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
