Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920530 | XP_003619574.1 | 82.488 | 217 | 14 | 2 | 1 | 193 | 1 | 217 | 5.45e-101 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920530 | sp|O82711|PIP22_PEA | 63.134 | 217 | 53 | 3 | 1 | 193 | 1 | 214 | 2.06e-86 | 259 |
| Msa0920530 | sp|O82711|PIP22_PEA | 66.667 | 57 | 19 | 0 | 194 | 250 | 44 | 100 | 9.13e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0920530 | Msa0993480 | 0.823686 | 1.212115e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920530 | MtrunA17_Chr6g0476871 | 82.488 | 217 | 14 | 2 | 1 | 193 | 1 | 217 | 5.01e-105 | 304 |
| Msa0920530 | MtrunA17_Chr6g0476871 | 75.439 | 57 | 14 | 0 | 194 | 250 | 44 | 100 | 8.45e-13 | 66.2 |
| Msa0920530 | MtrunA17_Chr6g0476831 | 57.895 | 228 | 66 | 5 | 1 | 203 | 1 | 223 | 1.33e-80 | 243 |
| Msa0920530 | MtrunA17_Chr6g0452491 | 47.317 | 205 | 84 | 4 | 1 | 184 | 1 | 202 | 2.58e-50 | 164 |
| Msa0920530 | MtrunA17_Chr6g0477741 | 49.289 | 211 | 83 | 4 | 1 | 190 | 1 | 208 | 2.71e-50 | 164 |
| Msa0920530 | MtrunA17_Chr6g0452521 | 46.602 | 206 | 85 | 5 | 1 | 184 | 33 | 235 | 6.80e-47 | 156 |
| Msa0920530 | MtrunA17_Chr6g0477751 | 46.188 | 223 | 89 | 6 | 1 | 200 | 1 | 215 | 1.57e-45 | 152 |
| Msa0920530 | MtrunA17_Chr6g0476791 | 47.465 | 217 | 79 | 10 | 1 | 186 | 1 | 213 | 1.81e-45 | 152 |
| Msa0920530 | MtrunA17_Chr1g0163381 | 44.000 | 225 | 90 | 9 | 1 | 193 | 1 | 221 | 9.81e-44 | 148 |
| Msa0920530 | MtrunA17_Chr6g0476951 | 40.455 | 220 | 86 | 11 | 1 | 192 | 1 | 203 | 8.30e-29 | 108 |
| Msa0920530 | MtrunA17_Chr6g0476921 | 40.838 | 191 | 77 | 8 | 22 | 185 | 22 | 203 | 1.37e-28 | 108 |
| Msa0920530 | MtrunA17_Chr6g0477281 | 39.796 | 196 | 79 | 7 | 7 | 184 | 6 | 180 | 2.43e-28 | 107 |
| Msa0920530 | MtrunA17_Chr6g0476961 | 40.909 | 220 | 84 | 12 | 1 | 192 | 1 | 202 | 2.23e-26 | 102 |
| Msa0920530 | MtrunA17_Chr6g0457121 | 57.576 | 99 | 27 | 2 | 1 | 86 | 26 | 122 | 4.14e-26 | 99.4 |
| Msa0920530 | MtrunA17_Chr3g0104591 | 42.697 | 178 | 68 | 6 | 32 | 182 | 29 | 199 | 4.49e-26 | 102 |
| Msa0920530 | MtrunA17_Chr6g0467611 | 42.400 | 125 | 54 | 3 | 1 | 108 | 1 | 124 | 3.80e-15 | 72.8 |
| Msa0920530 | MtrunA17_Chr6g0467761 | 41.600 | 125 | 55 | 3 | 1 | 108 | 1 | 124 | 8.61e-15 | 71.6 |
| Msa0920530 | MtrunA17_Chr6g0467621 | 41.732 | 127 | 52 | 5 | 1 | 108 | 1 | 124 | 8.94e-15 | 71.6 |
| Msa0920530 | MtrunA17_Chr6g0481941 | 33.514 | 185 | 90 | 8 | 30 | 184 | 24 | 205 | 6.38e-14 | 68.9 |
| Msa0920530 | MtrunA17_Chr6g0481911 | 30.256 | 195 | 104 | 8 | 20 | 184 | 11 | 203 | 1.17e-12 | 65.5 |
| Msa0920530 | MtrunA17_Chr6g0467771 | 38.400 | 125 | 58 | 4 | 1 | 108 | 1 | 123 | 2.69e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTACTTGTTTGGATATT+GGG | 0.171447 | 6_2:-55632553 | Msa0920530:CDS |
| AATATTGAGAAACATGAATT+TGG | 0.202703 | 6_2:-55632611 | Msa0920530:CDS |
| TCTCCTACTTGTTTGGATAT+TGG | 0.268285 | 6_2:-55632554 | Msa0920530:CDS |
| GAGAAACATGAATTTGGATT+TGG | 0.300831 | 6_2:-55632605 | Msa0920530:intron |
| CATTGTGAGTTAACACAATT+AGG | 0.302871 | 6_2:+55630530 | None:intergenic |
| GAACAAGTATTGGACATAAA+TGG | 0.312320 | 6_2:-55632980 | Msa0920530:CDS |
| GAAAGATTCTCCTACTTGTT+TGG | 0.325215 | 6_2:-55632561 | Msa0920530:intron |
| CCAAGGGGTCCTCGAATTGC+AGG | 0.355865 | 6_2:+55632920 | None:intergenic |
| TTTGATGATTCAGCGCAATT+AGG | 0.356654 | 6_2:+55632731 | None:intergenic |
| ATTGCGCTGAATCATCAAAA+TGG | 0.370243 | 6_2:-55632727 | Msa0920530:CDS |
| ACAATTCGTGGGCCCGTTGA+TGG | 0.375380 | 6_2:-55630715 | Msa0920530:CDS |
| GATGCTGCTTCTTACGAAAC+TGG | 0.385642 | 6_2:-55632449 | Msa0920530:CDS |
| TGAGAAAGCTAGTGAAAGAT+TGG | 0.414943 | 6_2:+55633015 | None:intergenic |
| TTTGTGAACTCGATCTCAAT+TGG | 0.421811 | 6_2:+55632758 | None:intergenic |
| GAATGATAAAACTTGCTTCA+TGG | 0.433901 | 6_2:+55633069 | None:intergenic |
| ATTATACCAGGACTCATTCC+TGG | 0.451383 | 6_2:+55632794 | None:intergenic |
| TGATGTTGTTGAACAAGTAT+TGG | 0.456591 | 6_2:-55632990 | Msa0920530:CDS |
| TCAACGGGCCCACGAATTGT+AGG | 0.457544 | 6_2:+55630718 | None:intergenic |
| CCTGCAATTCGAGGACCCCT+TGG | 0.473846 | 6_2:-55632920 | Msa0920530:CDS |
| TACTTGTTTGGATATTGGGA+GGG | 0.474470 | 6_2:-55632549 | Msa0920530:CDS |
| GGTGGTCCTGAAAATTATCC+TGG | 0.475229 | 6_2:-55632659 | Msa0920530:CDS |
| AGTCTTAATCCTCCATCAAC+GGG | 0.476695 | 6_2:+55630703 | None:intergenic |
| GCAGCATCAACAAACACAAC+CGG | 0.484392 | 6_2:+55632464 | None:intergenic |
| CCTGGTATGTTAAATTTCAC+TGG | 0.486278 | 6_2:+55630610 | None:intergenic |
| GCAATTCGAGGACCCCTTGG+TGG | 0.502881 | 6_2:-55632917 | Msa0920530:CDS |
| CCAGTGAAATTCAGTATACC+AGG | 0.505220 | 6_2:-55632812 | Msa0920530:CDS |
| AAAGCTTGTGTTGGTATTGG+TGG | 0.506283 | 6_2:-55632677 | Msa0920530:CDS |
| CTACTTGTTTGGATATTGGG+AGG | 0.508339 | 6_2:-55632550 | Msa0920530:CDS |
| CCTGGTATACTGAATTTCAC+TGG | 0.516748 | 6_2:+55632812 | None:intergenic |
| CATGAAGAGGTGGAGGATGA+AGG | 0.524538 | 6_2:-55632524 | Msa0920530:CDS |
| AGTCCTGGTATAATCTTCAC+TGG | 0.524960 | 6_2:-55632785 | Msa0920530:CDS |
| ATTCGAGGACCCCTTGGTGG+AGG | 0.529072 | 6_2:-55632914 | Msa0920530:CDS |
| TTTACATTTGACTCATCAAG+TGG | 0.535143 | 6_2:-55632492 | Msa0920530:CDS |
| CCACTCAATGTTCTAAAACC+AGG | 0.535902 | 6_2:+55632641 | None:intergenic |
| CCAGTGAAATTTAACATACC+AGG | 0.541800 | 6_2:-55630610 | Msa0920530:CDS |
| AACATACCAGGTATAAGTCC+TGG | 0.551703 | 6_2:-55630598 | Msa0920530:CDS |
| GATTACAATGAAGTTATCAA+TGG | 0.556101 | 6_2:-55632839 | Msa0920530:intron |
| AACAAAGAGGAGGACGGAAA+GGG | 0.558622 | 6_2:+55633045 | None:intergenic |
| GAGGGCTCATGAAGAGGTGG+AGG | 0.572768 | 6_2:-55632531 | Msa0920530:CDS |
| TAGTCTTAATCCTCCATCAA+CGG | 0.573391 | 6_2:+55630702 | None:intergenic |
| TAGTCTTAATCCTCCACCAA+GGG | 0.575545 | 6_2:+55632904 | None:intergenic |
| CTTGGTGGAGGATTAAGACT+AGG | 0.578734 | 6_2:-55632902 | Msa0920530:CDS |
| AGTATACCAGGAATGAGTCC+TGG | 0.579333 | 6_2:-55632800 | Msa0920530:CDS |
| AAACAAAGAGGAGGACGGAA+AGG | 0.582098 | 6_2:+55633044 | None:intergenic |
| TATTGGGAGGGCTCATGAAG+AGG | 0.598687 | 6_2:-55632537 | Msa0920530:CDS |
| ATTCGTGGGCCCGTTGATGG+AGG | 0.601794 | 6_2:-55630712 | Msa0920530:CDS |
| GAAGAGGTGGAGGATGAAGG+TGG | 0.620322 | 6_2:-55632521 | Msa0920530:CDS |
| AATACCAATAAAATTATACC+AGG | 0.629761 | 6_2:+55630580 | None:intergenic |
| GATTGGTAGTGAAAACAAAG+AGG | 0.642246 | 6_2:+55633032 | None:intergenic |
| TGGGAGGGCTCATGAAGAGG+TGG | 0.646246 | 6_2:-55632534 | Msa0920530:CDS |
| ATTATACCAGGACTTATACC+TGG | 0.648632 | 6_2:+55630592 | None:intergenic |
| CTCCCAATATCCAAACAAGT+AGG | 0.652742 | 6_2:+55632551 | None:intergenic |
| CTAGTCTTAATCCTCCACCA+AGG | 0.657509 | 6_2:+55632903 | None:intergenic |
| GTTGATGGAGGATTAAGACT+AGG | 0.658908 | 6_2:-55630700 | Msa0920530:CDS |
| GTACCAGTGAAGATTATACC+AGG | 0.672259 | 6_2:+55632782 | None:intergenic |
| AGTGAAAACAAAGAGGAGGA+CGG | 0.684396 | 6_2:+55633039 | None:intergenic |
| TGGTAGTGAAAACAAAGAGG+AGG | 0.691866 | 6_2:+55633035 | None:intergenic |
| AGTCTTAATCCTCCACCAAG+GGG | 0.703379 | 6_2:+55632905 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCACTAAACATAAATAAA+TGG | - | chr6_2:55631954-55631973 | Msa0920530:intron | 15.0% |
| !! | ATCACTAAACATAAATAAAT+GGG | - | chr6_2:55631955-55631974 | Msa0920530:intron | 15.0% |
| !!! | ATGTTATGAATGTTTTTTAA+AGG | - | chr6_2:55632194-55632213 | Msa0920530:intron | 15.0% |
| !! | ATTAAGAAATATAATTGTTC+TGG | + | chr6_2:55632704-55632723 | None:intergenic | 15.0% |
| !! | AAAATACATATAATTTGAGA+CGG | - | chr6_2:55632742-55632761 | Msa0920530:CDS | 15.0% |
| !! | AATATTGAGAAACATGAATT+TGG | - | chr6_2:55630978-55630997 | Msa0920530:intron | 20.0% |
| !!! | ATTTTTTGCATTTATAGCAT+TGG | + | chr6_2:55631428-55631447 | None:intergenic | 20.0% |
| !!! | TCATAAAATTTTACCACTTT+AGG | - | chr6_2:55631449-55631468 | Msa0920530:intron | 20.0% |
| !!! | TCATTCTTTTACTATTAACA+TGG | + | chr6_2:55631580-55631599 | None:intergenic | 20.0% |
| !! | TCACTAAACATAAATAAATG+GGG | - | chr6_2:55631956-55631975 | Msa0920530:intron | 20.0% |
| !!! | ATCTTTTGAAAAGAAAAGAT+GGG | - | chr6_2:55632225-55632244 | Msa0920530:intron | 20.0% |
| !! | AATACCAATAAAATTATACC+AGG | + | chr6_2:55633012-55633031 | None:intergenic | 20.0% |
| ! | ACTAGGAAAATCAAGTAATT+CGG | - | chr6_2:55630704-55630723 | Msa0920530:CDS | 25.0% |
| ! | GATTACAATGAAGTTATCAA+TGG | - | chr6_2:55630750-55630769 | Msa0920530:intron | 25.0% |
| !! | ATGAATTTGGATTTGGTTAT+AGG | - | chr6_2:55630991-55631010 | Msa0920530:intron | 25.0% |
| ! | CTAGTGAATTATAACAATCA+AGG | + | chr6_2:55631190-55631209 | None:intergenic | 25.0% |
| ! | GAATGATAGAGTACATAATT+TGG | - | chr6_2:55631594-55631613 | Msa0920530:intron | 25.0% |
| !! | AACGAAACTGATTTAACAAT+AGG | - | chr6_2:55631817-55631836 | Msa0920530:intron | 25.0% |
| ! | CACTAAACATAAATAAATGG+GGG | - | chr6_2:55631957-55631976 | Msa0920530:intron | 25.0% |
| ! | TTCATTCATATACCAACATA+GGG | + | chr6_2:55632040-55632059 | None:intergenic | 25.0% |
| ! | CTCACAATAAAGAGAATATA+AGG | - | chr6_2:55632089-55632108 | Msa0920530:intron | 25.0% |
| ! | AAACATTCATAACATTTGAG+TGG | + | chr6_2:55632189-55632208 | None:intergenic | 25.0% |
| !!! | GATCTTTTGAAAAGAAAAGA+TGG | - | chr6_2:55632224-55632243 | Msa0920530:intron | 25.0% |
| !!! | TCTTTTGAAAAGAAAAGATG+GGG | - | chr6_2:55632226-55632245 | Msa0920530:intron | 25.0% |
| !!! | TAGTTAGAAGTATAGAGTTT+TGG | - | chr6_2:55632382-55632401 | Msa0920530:intron | 25.0% |
| !! | AAGTCCTGGTATAATTTTAT+TGG | - | chr6_2:55633005-55633024 | Msa0920530:CDS | 25.0% |
| TGATGTTGTTGAACAAGTAT+TGG | - | chr6_2:55630599-55630618 | Msa0920530:CDS | 30.0% | |
| !! | GAACAAGTATTGGACATAAA+TGG | - | chr6_2:55630609-55630628 | Msa0920530:CDS | 30.0% |
| ! | TATTTTCCACCTGGAAAAAT+GGG | + | chr6_2:55630639-55630658 | None:intergenic | 30.0% |
| ! | AAAATGTAGTATTTTCCACC+TGG | + | chr6_2:55630648-55630667 | None:intergenic | 30.0% |
| GTTATTCAAAAAGCTTGTGT+TGG | - | chr6_2:55630903-55630922 | Msa0920530:intron | 30.0% | |
| ! | CTAAAACCAGGATAATTTTC+AGG | + | chr6_2:55630939-55630958 | None:intergenic | 30.0% |
| GAGAAACATGAATTTGGATT+TGG | - | chr6_2:55630984-55631003 | Msa0920530:intron | 30.0% | |
| TTTACATTTGACTCATCAAG+TGG | - | chr6_2:55631097-55631116 | Msa0920530:intron | 30.0% | |
| AAAAGCAAGTGCAGTTATTA+AGG | + | chr6_2:55631310-55631329 | None:intergenic | 30.0% | |
| CATCAATATTACAGATCTAG+AGG | + | chr6_2:55631766-55631785 | None:intergenic | 30.0% | |
| TCTTCATGATTTCATTGTCT+TGG | + | chr6_2:55631911-55631930 | None:intergenic | 30.0% | |
| TAAACATAAATAAATGGGGG+AGG | - | chr6_2:55631960-55631979 | Msa0920530:intron | 30.0% | |
| AAACATAAATAAATGGGGGA+GGG | - | chr6_2:55631961-55631980 | Msa0920530:intron | 30.0% | |
| ! | CGATTTATAGGAGTGATTTT+CGG | - | chr6_2:55631989-55632008 | Msa0920530:intron | 30.0% |
| TCATTCATATACCAACATAG+GGG | + | chr6_2:55632039-55632058 | None:intergenic | 30.0% | |
| CTTCATTCATATACCAACAT+AGG | + | chr6_2:55632041-55632060 | None:intergenic | 30.0% | |
| CTATGTTGGTATATGAATGA+AGG | - | chr6_2:55632039-55632058 | Msa0920530:intron | 30.0% | |
| TGAATGAAGGAGAAGAAATT+AGG | - | chr6_2:55632052-55632071 | Msa0920530:intron | 30.0% | |
| GAATGAAGGAGAAGAAATTA+GGG | - | chr6_2:55632053-55632072 | Msa0920530:intron | 30.0% | |
| !! | CTTTTGAAAAGAAAAGATGG+GGG | - | chr6_2:55632227-55632246 | Msa0920530:intron | 30.0% |
| AGTCAATCATTGTAGATTGA+TGG | - | chr6_2:55632519-55632538 | Msa0920530:CDS | 30.0% | |
| !! | AATAGATTGAGCCTAGTTTT+TGG | - | chr6_2:55632644-55632663 | Msa0920530:CDS | 30.0% |
| !! | ATAGATTGAGCCTAGTTTTT+GGG | - | chr6_2:55632645-55632664 | Msa0920530:CDS | 30.0% |
| ! | AGAGCAACATTTTTATGTCT+TGG | - | chr6_2:55632767-55632786 | Msa0920530:CDS | 30.0% |
| ! | TATTTTCCCCTTGGAAAAAT+GGG | + | chr6_2:55632841-55632860 | None:intergenic | 30.0% |
| ! | AAAATGTAGTATTTTCCCCT+TGG | + | chr6_2:55632850-55632869 | None:intergenic | 30.0% |
| CATTGTGAGTTAACACAATT+AGG | + | chr6_2:55633062-55633081 | None:intergenic | 30.0% | |
| !! | GATTGGTAGTGAAAACAAAG+AGG | + | chr6_2:55630560-55630579 | None:intergenic | 35.0% |
| TGAGAAAGCTAGTGAAAGAT+TGG | + | chr6_2:55630577-55630596 | None:intergenic | 35.0% | |
| ! | ATTTTCCACCTGGAAAAATG+GGG | + | chr6_2:55630638-55630657 | None:intergenic | 35.0% |
| ! | GTATTTTCCACCTGGAAAAA+TGG | + | chr6_2:55630640-55630659 | None:intergenic | 35.0% |
| TTTGTGAACTCGATCTCAAT+TGG | + | chr6_2:55630834-55630853 | None:intergenic | 35.0% | |
| ! | TTTGATGATTCAGCGCAATT+AGG | + | chr6_2:55630861-55630880 | None:intergenic | 35.0% |
| ATTGCGCTGAATCATCAAAA+TGG | - | chr6_2:55630862-55630881 | Msa0920530:intron | 35.0% | |
| ! | CAAAAAGCTTGTGTTGGTAT+TGG | - | chr6_2:55630909-55630928 | Msa0920530:intron | 35.0% |
| ! | TTTGGATTTGGTTATAGGCT+TGG | - | chr6_2:55630996-55631015 | Msa0920530:intron | 35.0% |
| GAAAGATTCTCCTACTTGTT+TGG | - | chr6_2:55631028-55631047 | Msa0920530:intron | 35.0% | |
| TCTCCTACTTGTTTGGATAT+TGG | - | chr6_2:55631035-55631054 | Msa0920530:intron | 35.0% | |
| CTCCTACTTGTTTGGATATT+GGG | - | chr6_2:55631036-55631055 | Msa0920530:intron | 35.0% | |
| TACTTGTTTGGATATTGGGA+GGG | - | chr6_2:55631040-55631059 | Msa0920530:intron | 35.0% | |
| GCAAAGAGTAATCATTGAGT+AGG | - | chr6_2:55631256-55631275 | Msa0920530:intron | 35.0% | |
| AGGTAATTGTTCTTCATGTG+AGG | - | chr6_2:55631276-55631295 | Msa0920530:intron | 35.0% | |
| !! | ACTGCACTTGCTTTTACTTT+TGG | - | chr6_2:55631315-55631334 | Msa0920530:intron | 35.0% |
| !! | CTGCACTTGCTTTTACTTTT+GGG | - | chr6_2:55631316-55631335 | Msa0920530:intron | 35.0% |
| !! | GTCTTGTTAAAGAGTGTCTT+CGG | - | chr6_2:55631338-55631357 | Msa0920530:intron | 35.0% |
| !! | TCTTGTTAAAGAGTGTCTTC+GGG | - | chr6_2:55631339-55631358 | Msa0920530:intron | 35.0% |
| TACTCTTTAAGCACCTAAAG+TGG | + | chr6_2:55631465-55631484 | None:intergenic | 35.0% | |
| GAAATGTTAACGAGTGTCTT+CGG | + | chr6_2:55631490-55631509 | None:intergenic | 35.0% | |
| GTCGTCTTATGCTATTAACA+TGG | + | chr6_2:55631661-55631680 | None:intergenic | 35.0% | |
| CAATATTTCAGACACAGATC+CGG | + | chr6_2:55631740-55631759 | None:intergenic | 35.0% | |
| GCAAATTCAATCAACGACTT+TGG | + | chr6_2:55631792-55631811 | None:intergenic | 35.0% | |
| AATCGAACAAACACAGTAAC+AGG | - | chr6_2:55631840-55631859 | Msa0920530:intron | 35.0% | |
| TGTCTCTATGTTATACACGA+TGG | - | chr6_2:55632129-55632148 | Msa0920530:intron | 35.0% | |
| GTCTCTATGTTATACACGAT+GGG | - | chr6_2:55632130-55632149 | Msa0920530:intron | 35.0% | |
| TCTCTATGTTATACACGATG+GGG | - | chr6_2:55632131-55632150 | Msa0920530:intron | 35.0% | |
| TTCTGATCAGGTTAGATTAG+TGG | + | chr6_2:55632278-55632297 | None:intergenic | 35.0% | |
| CTGATCAGAAGAACAAAGTT+CGG | - | chr6_2:55632288-55632307 | Msa0920530:intron | 35.0% | |
| GGATGGAATCCTTCTAATTA+TGG | - | chr6_2:55632452-55632471 | Msa0920530:CDS | 35.0% | |
| TGGAATCCTTCTAATTATGG+TGG | - | chr6_2:55632455-55632474 | Msa0920530:CDS | 35.0% | |
| GGAATCCTTCTAATTATGGT+GGG | - | chr6_2:55632456-55632475 | Msa0920530:CDS | 35.0% | |
| ! | ATTGTAGATTGATGGCATTG+AGG | - | chr6_2:55632527-55632546 | Msa0920530:CDS | 35.0% |
| AAACTAGGCTCAATCTATTG+AGG | + | chr6_2:55632643-55632662 | None:intergenic | 35.0% | |
| TGATGTTGTTGAGCAAGTAT+TGG | - | chr6_2:55632801-55632820 | Msa0920530:CDS | 35.0% | |
| !! | GAGCAAGTATTGGACATAAA+TGG | - | chr6_2:55632811-55632830 | Msa0920530:CDS | 35.0% |
| ! | ATTTTCCCCTTGGAAAAATG+GGG | + | chr6_2:55632840-55632859 | None:intergenic | 35.0% |
| ! | GTATTTTCCCCTTGGAAAAA+TGG | + | chr6_2:55632842-55632861 | None:intergenic | 35.0% |
| ! | TACATTTTGCCTACAATTCG+TGG | - | chr6_2:55632862-55632881 | Msa0920530:intron | 35.0% |
| ! | ACATTTTGCCTACAATTCGT+GGG | - | chr6_2:55632863-55632882 | Msa0920530:intron | 35.0% |
| ! | TAGTCTTAATCCTCCATCAA+CGG | + | chr6_2:55632890-55632909 | None:intergenic | 35.0% |
| CCTGGTATGTTAAATTTCAC+TGG | + | chr6_2:55632982-55633001 | None:intergenic | 35.0% | |
| CCAGTGAAATTTAACATACC+AGG | - | chr6_2:55632979-55632998 | Msa0920530:CDS | 35.0% | |
| ATTATACCAGGACTTATACC+TGG | + | chr6_2:55633000-55633019 | None:intergenic | 35.0% | |
| AGTGAAAACAAAGAGGAGGA+CGG | + | chr6_2:55630553-55630572 | None:intergenic | 40.0% | |
| ! | TGGTAGTGAAAACAAAGAGG+AGG | + | chr6_2:55630557-55630576 | None:intergenic | 40.0% |
| !! | AATGGTAACCCCATTTTTCC+AGG | - | chr6_2:55630627-55630646 | Msa0920530:CDS | 40.0% |
| ! | TACATTTTGCCTGCAATTCG+AGG | - | chr6_2:55630660-55630679 | Msa0920530:CDS | 40.0% |
| ! | TAGTCTTAATCCTCCACCAA+GGG | + | chr6_2:55630688-55630707 | None:intergenic | 40.0% |
| CCTGGTATACTGAATTTCAC+TGG | + | chr6_2:55630780-55630799 | None:intergenic | 40.0% | |
| CCAGTGAAATTCAGTATACC+AGG | - | chr6_2:55630777-55630796 | Msa0920530:intron | 40.0% | |
| ATTATACCAGGACTCATTCC+TGG | + | chr6_2:55630798-55630817 | None:intergenic | 40.0% | |
| AGTCCTGGTATAATCTTCAC+TGG | - | chr6_2:55630804-55630823 | Msa0920530:intron | 40.0% | |
| GTACCAGTGAAGATTATACC+AGG | + | chr6_2:55630810-55630829 | None:intergenic | 40.0% | |
| ! | AAAGCTTGTGTTGGTATTGG+TGG | - | chr6_2:55630912-55630931 | Msa0920530:intron | 40.0% |
| !! | CCACTCAATGTTCTAAAACC+AGG | + | chr6_2:55630951-55630970 | None:intergenic | 40.0% |
| !!! | CCTGGTTTTAGAACATTGAG+TGG | - | chr6_2:55630948-55630967 | Msa0920530:intron | 40.0% |
| CTCCCAATATCCAAACAAGT+AGG | + | chr6_2:55631041-55631060 | None:intergenic | 40.0% | |
| CTACTTGTTTGGATATTGGG+AGG | - | chr6_2:55631039-55631058 | Msa0920530:intron | 40.0% | |
| GCAAGTGCAGTTATTAAGGA+AGG | + | chr6_2:55631306-55631325 | None:intergenic | 40.0% | |
| ! | ATCTGAAATAGTGATGCCTC+CGG | - | chr6_2:55631718-55631737 | Msa0920530:intron | 40.0% |
| GGAAAACACAACGATGAACA+AGG | - | chr6_2:55631861-55631880 | Msa0920530:intron | 40.0% | |
| !!! | TACCAACATAGGGGTGTTTT+AGG | + | chr6_2:55632030-55632049 | None:intergenic | 40.0% |
| TTGAAAAGAAAAGATGGGGG+AGG | - | chr6_2:55632230-55632249 | Msa0920530:intron | 40.0% | |
| CGAACTTTGTTCTTCTGATC+AGG | + | chr6_2:55632290-55632309 | None:intergenic | 40.0% | |
| TGAGGACTCAAACAATCCTT+CGG | + | chr6_2:55632425-55632444 | None:intergenic | 40.0% | |
| TGTTTGAGTCCTCAAGAACA+AGG | - | chr6_2:55632431-55632450 | Msa0920530:intron | 40.0% | |
| GACATCCCACCATAATTAGA+AGG | + | chr6_2:55632464-55632483 | None:intergenic | 40.0% | |
| ! | TGGTGGGATGTCATTGATTA+AGG | - | chr6_2:55632472-55632491 | Msa0920530:CDS | 40.0% |
| ! | GGTGGGATGTCATTGATTAA+GGG | - | chr6_2:55632473-55632492 | Msa0920530:CDS | 40.0% |
| ! | ATTGTTCTGGACTGTCCAAA+AGG | + | chr6_2:55632691-55632710 | None:intergenic | 40.0% |
| !! | ATGGTAACCCCATTTTTCCA+AGG | - | chr6_2:55630628-55630647 | Msa0920530:CDS | 40.0% |
| !! | TGGTAACCCCATTTTTCCAA+GGG | - | chr6_2:55632831-55632850 | Msa0920530:intron | 40.0% |
| AGTCTTAATCCTCCATCAAC+GGG | + | chr6_2:55632889-55632908 | None:intergenic | 40.0% | |
| ! | GTTGATGGAGGATTAAGACT+AGG | - | chr6_2:55632889-55632908 | Msa0920530:intron | 40.0% |
| AACATACCAGGTATAAGTCC+TGG | - | chr6_2:55632991-55633010 | Msa0920530:CDS | 40.0% | |
| AACAAAGAGGAGGACGGAAA+GGG | + | chr6_2:55630547-55630566 | None:intergenic | 45.0% | |
| AAACAAAGAGGAGGACGGAA+AGG | + | chr6_2:55630548-55630567 | None:intergenic | 45.0% | |
| AGTCTTAATCCTCCACCAAG+GGG | + | chr6_2:55630687-55630706 | None:intergenic | 45.0% | |
| !! | CTAGTCTTAATCCTCCACCA+AGG | + | chr6_2:55630689-55630708 | None:intergenic | 45.0% |
| CTTGGTGGAGGATTAAGACT+AGG | - | chr6_2:55630687-55630706 | Msa0920530:CDS | 45.0% | |
| AGTATACCAGGAATGAGTCC+TGG | - | chr6_2:55630789-55630808 | Msa0920530:intron | 45.0% | |
| GGTGGTCCTGAAAATTATCC+TGG | - | chr6_2:55630930-55630949 | Msa0920530:intron | 45.0% | |
| ! | GACTCATCAAGTGGCTTTTC+CGG | - | chr6_2:55631106-55631125 | Msa0920530:intron | 45.0% |
| GCAGCATCAACAAACACAAC+CGG | + | chr6_2:55631128-55631147 | None:intergenic | 45.0% | |
| ! | GATGCTGCTTCTTACGAAAC+TGG | - | chr6_2:55631140-55631159 | Msa0920530:intron | 45.0% |
| TATTTCAGACACAGATCCGG+AGG | + | chr6_2:55631737-55631756 | None:intergenic | 45.0% | |
| GGGAGGGAAATGCGATTTAT+AGG | - | chr6_2:55631977-55631996 | Msa0920530:intron | 45.0% | |
| AGCCTAAAACACCCCTATGT+TGG | - | chr6_2:55632025-55632044 | Msa0920530:intron | 45.0% | |
| AGAAAAGATGGGGGAGGAAT+TGG | - | chr6_2:55632236-55632255 | Msa0920530:intron | 45.0% | |
| TAGATTAGTGGCGTCGTTTG+TGG | + | chr6_2:55632266-55632285 | None:intergenic | 45.0% | |
| ! | CAGAAGAACAAAGTTCGGTG+TGG | - | chr6_2:55632293-55632312 | Msa0920530:intron | 45.0% |
| ! | TTGAGCGCCAAAGTATCTTC+TGG | + | chr6_2:55632352-55632371 | None:intergenic | 45.0% |
| GAAGATAAATCGTACCCCGA+AGG | - | chr6_2:55632406-55632425 | Msa0920530:intron | 45.0% | |
| AGGACTCAAACAATCCTTCG+GGG | + | chr6_2:55632423-55632442 | None:intergenic | 45.0% | |
| GAGGACTCAAACAATCCTTC+GGG | + | chr6_2:55632424-55632443 | None:intergenic | 45.0% | |
| TGAGTCCTCAAGAACAAGGA+TGG | - | chr6_2:55632435-55632454 | Msa0920530:intron | 45.0% | |
| GGATTCCATCCTTGTTCTTG+AGG | + | chr6_2:55632443-55632462 | None:intergenic | 45.0% | |
| !!! | TGAGCCTAGTTTTTGGGTCA+TGG | - | chr6_2:55632651-55632670 | Msa0920530:CDS | 45.0% |
| CAGTCCATGACCCAAAAACT+AGG | + | chr6_2:55632658-55632677 | None:intergenic | 45.0% | |
| !! | GGTAACCCCATTTTTCCAAG+GGG | - | chr6_2:55632832-55632851 | Msa0920530:intron | 45.0% |
| !! | GGTAACCCCATTTTTCCAGG+TGG | - | chr6_2:55630630-55630649 | Msa0920530:CDS | 50.0% |
| TATTGGGAGGGCTCATGAAG+AGG | - | chr6_2:55631052-55631071 | Msa0920530:intron | 50.0% | |
| CATGAAGAGGTGGAGGATGA+AGG | - | chr6_2:55631065-55631084 | Msa0920530:intron | 50.0% | |
| GGTGTGGTGAGTTTGTAGCT+AGG | - | chr6_2:55632309-55632328 | Msa0920530:intron | 50.0% | |
| TTTGTAGCTAGGACGACCGA+GGG | - | chr6_2:55632320-55632339 | Msa0920530:intron | 50.0% | |
| GGTGCCTCCAGAAGATACTT+TGG | - | chr6_2:55632342-55632361 | Msa0920530:intron | 50.0% | |
| ! | AGCGCCAAAGTATCTTCTGG+AGG | + | chr6_2:55632349-55632368 | None:intergenic | 50.0% |
| TTCACATCCTCCACCCAACA+GGG | + | chr6_2:55632606-55632625 | None:intergenic | 50.0% | |
| ATTCACATCCTCCACCCAAC+AGG | + | chr6_2:55632607-55632626 | None:intergenic | 50.0% | |
| ! | GACTGACGAGCAAAGCCTTT+TGG | - | chr6_2:55632673-55632692 | Msa0920530:CDS | 50.0% |
| GAAGAGGTGGAGGATGAAGG+TGG | - | chr6_2:55631068-55631087 | Msa0920530:intron | 55.0% | |
| GTTTGTAGCTAGGACGACCG+AGG | - | chr6_2:55632319-55632338 | Msa0920530:intron | 55.0% | |
| TTGTAGCTAGGACGACCGAG+GGG | - | chr6_2:55632321-55632340 | Msa0920530:intron | 55.0% | |
| !! | TATCTTCTGGAGGCACCCCT+CGG | + | chr6_2:55632339-55632358 | None:intergenic | 55.0% |
| TTGTGAGCACACCTCCCTGT+TGG | - | chr6_2:55632589-55632608 | Msa0920530:intron | 55.0% | |
| TGTGAGCACACCTCCCTGTT+GGG | - | chr6_2:55632590-55632609 | Msa0920530:intron | 55.0% | |
| TCAACGGGCCCACGAATTGT+AGG | + | chr6_2:55632874-55632893 | None:intergenic | 55.0% | |
| ACAATTCGTGGGCCCGTTGA+TGG | - | chr6_2:55632874-55632893 | Msa0920530:intron | 55.0% | |
| CCAAGGGGTCCTCGAATTGC+AGG | + | chr6_2:55630672-55630691 | None:intergenic | 60.0% | |
| CCTGCAATTCGAGGACCCCT+TGG | - | chr6_2:55630669-55630688 | Msa0920530:CDS | 60.0% | |
| GCAATTCGAGGACCCCTTGG+TGG | - | chr6_2:55630672-55630691 | Msa0920530:CDS | 60.0% | |
| ATTCGAGGACCCCTTGGTGG+AGG | - | chr6_2:55630675-55630694 | Msa0920530:CDS | 60.0% | |
| TGGGAGGGCTCATGAAGAGG+TGG | - | chr6_2:55631055-55631074 | Msa0920530:intron | 60.0% | |
| GAGGGCTCATGAAGAGGTGG+AGG | - | chr6_2:55631058-55631077 | Msa0920530:intron | 60.0% | |
| ACATCCTCCACCCAACAGGG+AGG | + | chr6_2:55632603-55632622 | None:intergenic | 60.0% | |
| ! | ATTCGTGGGCCCGTTGATGG+AGG | - | chr6_2:55632877-55632896 | Msa0920530:intron | 60.0% |
| GAGCACACCTCCCTGTTGGG+TGG | - | chr6_2:55632593-55632612 | Msa0920530:intron | 65.0% | |
| CACACCTCCCTGTTGGGTGG+AGG | - | chr6_2:55632596-55632615 | Msa0920530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 55630522 | 55633089 | 55630522 | ID=Msa0920530;Name=Msa0920530 |
| chr6_2 | mRNA | 55630522 | 55633089 | 55630522 | ID=Msa0920530-mRNA-1;Parent=Msa0920530;Name=Msa0920530-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|0|0|4|0|271 |
| chr6_2 | exon | 55632894 | 55633089 | 55632894 | ID=Msa0920530-mRNA-1:exon:8273;Parent=Msa0920530-mRNA-1 |
| chr6_2 | exon | 55632606 | 55632848 | 55632606 | ID=Msa0920530-mRNA-1:exon:8272;Parent=Msa0920530-mRNA-1 |
| chr6_2 | exon | 55632440 | 55632578 | 55632440 | ID=Msa0920530-mRNA-1:exon:8271;Parent=Msa0920530-mRNA-1 |
| chr6_2 | exon | 55630522 | 55630759 | 55630522 | ID=Msa0920530-mRNA-1:exon:8270;Parent=Msa0920530-mRNA-1 |
| chr6_2 | CDS | 55632894 | 55633089 | 55632894 | ID=Msa0920530-mRNA-1:cds;Parent=Msa0920530-mRNA-1 |
| chr6_2 | CDS | 55632606 | 55632848 | 55632606 | ID=Msa0920530-mRNA-1:cds;Parent=Msa0920530-mRNA-1 |
| chr6_2 | CDS | 55632440 | 55632578 | 55632440 | ID=Msa0920530-mRNA-1:cds;Parent=Msa0920530-mRNA-1 |
| chr6_2 | CDS | 55630522 | 55630759 | 55630522 | ID=Msa0920530-mRNA-1:cds;Parent=Msa0920530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
