Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924750 | XP_003606295.3 | 66.827 | 208 | 54 | 5 | 2 | 202 | 57 | 256 | 1.92e-76 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0924750 | Msa1132050 | 0.860404 | 2.115720e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924750 | MtrunA17_Chr4g0027321 | 66.827 | 208 | 54 | 5 | 2 | 202 | 94 | 293 | 8.10e-80 | 239 |
| Msa0924750 | MtrunA17_Chr3g0120641 | 41.958 | 143 | 66 | 4 | 57 | 186 | 87 | 225 | 3.73e-26 | 100 |
| Msa0924750 | MtrunA17_Chr3g0120591 | 41.958 | 143 | 66 | 4 | 57 | 186 | 68 | 206 | 6.48e-26 | 99.8 |
| Msa0924750 | MtrunA17_Chr3g0119711 | 39.521 | 167 | 80 | 7 | 51 | 201 | 37 | 198 | 1.01e-25 | 98.6 |
| Msa0924750 | MtrunA17_Chr3g0120981 | 35.333 | 150 | 77 | 5 | 49 | 186 | 48 | 189 | 1.45e-17 | 77.4 |
| Msa0924750 | MtrunA17_Chr3g0120951 | 36.800 | 125 | 60 | 5 | 57 | 171 | 58 | 173 | 4.37e-15 | 70.9 |
| Msa0924750 | MtrunA17_Chr3g0120941 | 36.800 | 125 | 60 | 5 | 57 | 171 | 94 | 209 | 7.44e-15 | 70.9 |
| Msa0924750 | MtrunA17_Chr3g0120961 | 33.333 | 162 | 88 | 6 | 49 | 202 | 40 | 189 | 1.23e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAGGAGGAGGATAAC+TGG | 0.231959 | 6_2:+67201197 | Msa0924750:CDS |
| GGAGAAGAAGGAGGAGATAT+TGG | 0.249675 | 6_2:+67201156 | Msa0924750:CDS |
| TACAATACCGCCAGTTAAAT+TGG | 0.300159 | 6_2:-67201542 | None:intergenic |
| GAGGAGGATAACTGGGATAA+GGG | 0.302652 | 6_2:+67201205 | Msa0924750:CDS |
| GAACGCCGCTTATACATAAA+TGG | 0.335076 | 6_2:-67201303 | None:intergenic |
| CCACCTGGTACCAATTTAAC+TGG | 0.365078 | 6_2:+67201532 | Msa0924750:CDS |
| GGAGGAGGATAACTGGGATA+AGG | 0.396045 | 6_2:+67201204 | Msa0924750:CDS |
| TGTGAAATCGGAACCGGAAC+AGG | 0.396564 | 6_2:+67201036 | Msa0924750:five_prime_UTR |
| GTCTGGAAAGTTGTTAGATC+AGG | 0.411819 | 6_2:-67201829 | None:intergenic |
| CTGCAAAGAAAGTGTGAAAT+CGG | 0.414840 | 6_2:+67201024 | None:intergenic |
| ACTTTATGAAACACAAAAGT+TGG | 0.418561 | 6_2:-67201721 | None:intergenic |
| ATAGTGATTATGAGGAATAC+TGG | 0.423819 | 6_2:+67201256 | Msa0924750:intron |
| GCTGGTATTTCTTTAACTGC+TGG | 0.423873 | 6_2:+67201763 | Msa0924750:CDS |
| GGAGGAAGAAGAAGAGGAGG+AGG | 0.437915 | 6_2:+67201189 | Msa0924750:CDS |
| CATCTTGAACTACATGAGTC+TGG | 0.449948 | 6_2:-67201846 | None:intergenic |
| CGAGTTTGCTTTGAATAAGC+AGG | 0.455151 | 6_2:+67201612 | Msa0924750:CDS |
| AGAAGAGGAGGAGGATAACT+GGG | 0.459973 | 6_2:+67201198 | Msa0924750:CDS |
| CGAAGGAGGAGGATATCATC+TGG | 0.460292 | 6_2:+67201134 | Msa0924750:CDS |
| GTATTTCTTTAACTGCTGGT+AGG | 0.460852 | 6_2:+67201767 | Msa0924750:CDS |
| AGAAGAGGAGGAAGAAGAAG+AGG | 0.467774 | 6_2:+67201183 | Msa0924750:CDS |
| TATTTCTTTAACTGCTGGTA+GGG | 0.470429 | 6_2:+67201768 | Msa0924750:CDS |
| GGAGATATTGGAAGAAGAAG+AGG | 0.477884 | 6_2:+67201168 | Msa0924750:CDS |
| AGAGGAGGAAGAAGAAGAGG+AGG | 0.486639 | 6_2:+67201186 | Msa0924750:CDS |
| GGATATCATCTGGGAGAAGA+AGG | 0.489838 | 6_2:+67201144 | Msa0924750:CDS |
| CCTCACGATCCAACCAAGCC+TGG | 0.508758 | 6_2:-67201347 | None:intergenic |
| CAGACTCATGTAGTTCAAGA+TGG | 0.513524 | 6_2:+67201847 | Msa0924750:CDS |
| GTTTAAGAACCAGGCTTGGT+TGG | 0.515058 | 6_2:+67201338 | Msa0924750:CDS |
| AGAAAGTGTGAAATCGGAAC+CGG | 0.517778 | 6_2:+67201030 | None:intergenic |
| ATGTATAAGCGGCGTTCTGA+TGG | 0.531157 | 6_2:+67201309 | Msa0924750:CDS |
| TTCATATGAGAAGGATAAGC+GGG | 0.536129 | 6_2:+67201078 | Msa0924750:five_prime_UTR |
| AGGAGGATAACTGGGATAAG+GGG | 0.536659 | 6_2:+67201206 | Msa0924750:CDS |
| TAAAGAAATACCAGCAGGAT+GGG | 0.537748 | 6_2:-67201755 | None:intergenic |
| GATATTGGAAGAAGAAGAGG+AGG | 0.537799 | 6_2:+67201171 | Msa0924750:CDS |
| GTCAAGTGTACCCATCCTGC+TGG | 0.541207 | 6_2:+67201745 | Msa0924750:CDS |
| CCGCCAGTTAAATTGGTACC+AGG | 0.544856 | 6_2:-67201535 | None:intergenic |
| TTAAATTGGTACCAGGTGGA+TGG | 0.546698 | 6_2:-67201528 | None:intergenic |
| CTCATCTTCATCTAAATCGA+GGG | 0.563365 | 6_2:-67201566 | None:intergenic |
| CATGAAGGAGGAGGATAAGC+GGG | 0.566341 | 6_2:+67201105 | Msa0924750:exon |
| CGATGAAGATTCATATGAGA+AGG | 0.570440 | 6_2:+67201069 | Msa0924750:five_prime_UTR |
| CCAGGCTTGGTTGGATCGTG+AGG | 0.575302 | 6_2:+67201347 | Msa0924750:CDS |
| GTCAACCATTTATGTATAAG+CGG | 0.575552 | 6_2:+67201298 | Msa0924750:CDS |
| TAAATTGGTACCAGGTGGAT+GGG | 0.577190 | 6_2:-67201527 | None:intergenic |
| GCGGGACTTCACGAAGGAGG+AGG | 0.581793 | 6_2:+67201123 | Msa0924750:CDS |
| TGGTTGTGTGTTTAAGAACC+AGG | 0.584909 | 6_2:+67201329 | Msa0924750:CDS |
| GTGTGTTTAAGAACCAGGCT+TGG | 0.590391 | 6_2:+67201334 | Msa0924750:CDS |
| GATGCTATCGCCCATCCACC+TGG | 0.590698 | 6_2:+67201517 | Msa0924750:CDS |
| GCGGGACTTCATGAAGGAGG+AGG | 0.593520 | 6_2:+67201096 | Msa0924750:exon |
| GGATAAGCGGGACTTCATGA+AGG | 0.599726 | 6_2:+67201090 | Msa0924750:exon |
| GCAGTTAAAGAAATACCAGC+AGG | 0.600140 | 6_2:-67201760 | None:intergenic |
| GAAGGAGGAGGATATCATCT+GGG | 0.612094 | 6_2:+67201135 | Msa0924750:CDS |
| TCATGAAGGAGGAGGATAAG+CGG | 0.612857 | 6_2:+67201104 | Msa0924750:exon |
| ATTCATATGAGAAGGATAAG+CGG | 0.628911 | 6_2:+67201077 | Msa0924750:five_prime_UTR |
| TTAAAGAAATACCAGCAGGA+TGG | 0.630544 | 6_2:-67201756 | None:intergenic |
| GCTCATCTTCATCTAAATCG+AGG | 0.638236 | 6_2:-67201567 | None:intergenic |
| TATCATCTGGGAGAAGAAGG+AGG | 0.641903 | 6_2:+67201147 | Msa0924750:CDS |
| CCTGGTACCAATTTAACTGG+CGG | 0.658974 | 6_2:+67201535 | Msa0924750:CDS |
| TCATCTTCATCTAAATCGAG+GGG | 0.668232 | 6_2:-67201565 | None:intergenic |
| TAAGCGGGACTTCATGAAGG+AGG | 0.672617 | 6_2:+67201093 | Msa0924750:exon |
| CCAGTTAAATTGGTACCAGG+TGG | 0.676412 | 6_2:-67201532 | None:intergenic |
| GGATAAGCGGGACTTCACGA+AGG | 0.690741 | 6_2:+67201117 | Msa0924750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTCTTACTTATTTAATT+AGG | + | chr6_2:67201696-67201715 | Msa0924750:intron | 15.0% |
| !! | TTCTTCTTACTTATTTAATT+AGG | + | chr6_2:67201696-67201715 | Msa0924750:intron | 15.0% |
| !!! | CTCTTAATTTTGATTGATTC+TGG | + | chr6_2:67201474-67201493 | Msa0924750:intron | 25.0% |
| ! | ACTTTATGAAACACAAAAGT+TGG | - | chr6_2:67201724-67201743 | None:intergenic | 25.0% |
| !!! | CTCTTAATTTTGATTGATTC+TGG | + | chr6_2:67201474-67201493 | Msa0924750:intron | 25.0% |
| ! | ACTTTATGAAACACAAAAGT+TGG | - | chr6_2:67201724-67201743 | None:intergenic | 25.0% |
| ATTCATATGAGAAGGATAAG+CGG | + | chr6_2:67201077-67201096 | Msa0924750:five_prime_UTR | 30.0% | |
| TTCTGAGTATAGTGATTATG+AGG | + | chr6_2:67201248-67201267 | Msa0924750:intron | 30.0% | |
| ATAGTGATTATGAGGAATAC+TGG | + | chr6_2:67201256-67201275 | Msa0924750:intron | 30.0% | |
| GTCAACCATTTATGTATAAG+CGG | + | chr6_2:67201298-67201317 | Msa0924750:CDS | 30.0% | |
| TATTTCTTTAACTGCTGGTA+GGG | + | chr6_2:67201768-67201787 | Msa0924750:CDS | 30.0% | |
| !! | TACATTACTTTTCAAGCAAC+AGG | + | chr6_2:67201796-67201815 | Msa0924750:CDS | 30.0% |
| !! | ACATTACTTTTCAAGCAACA+GGG | + | chr6_2:67201797-67201816 | Msa0924750:CDS | 30.0% |
| ATTCATATGAGAAGGATAAG+CGG | + | chr6_2:67201077-67201096 | Msa0924750:five_prime_UTR | 30.0% | |
| TTCTGAGTATAGTGATTATG+AGG | + | chr6_2:67201248-67201267 | Msa0924750:intron | 30.0% | |
| ATAGTGATTATGAGGAATAC+TGG | + | chr6_2:67201256-67201275 | Msa0924750:intron | 30.0% | |
| GTCAACCATTTATGTATAAG+CGG | + | chr6_2:67201298-67201317 | Msa0924750:CDS | 30.0% | |
| TATTTCTTTAACTGCTGGTA+GGG | + | chr6_2:67201768-67201787 | Msa0924750:CDS | 30.0% | |
| !! | TACATTACTTTTCAAGCAAC+AGG | + | chr6_2:67201796-67201815 | Msa0924750:CDS | 30.0% |
| !! | ACATTACTTTTCAAGCAACA+GGG | + | chr6_2:67201797-67201816 | Msa0924750:CDS | 30.0% |
| CGATGAAGATTCATATGAGA+AGG | + | chr6_2:67201069-67201088 | Msa0924750:five_prime_UTR | 35.0% | |
| TTCATATGAGAAGGATAAGC+GGG | + | chr6_2:67201078-67201097 | Msa0924750:five_prime_UTR | 35.0% | |
| TACAATACCGCCAGTTAAAT+TGG | - | chr6_2:67201545-67201564 | None:intergenic | 35.0% | |
| TCATCTTCATCTAAATCGAG+GGG | - | chr6_2:67201568-67201587 | None:intergenic | 35.0% | |
| CTCATCTTCATCTAAATCGA+GGG | - | chr6_2:67201569-67201588 | None:intergenic | 35.0% | |
| ! | TTTGCTTTGAATAAGCAGGT+TGG | + | chr6_2:67201616-67201635 | Msa0924750:intron | 35.0% |
| TAAAGAAATACCAGCAGGAT+GGG | - | chr6_2:67201758-67201777 | None:intergenic | 35.0% | |
| TTAAAGAAATACCAGCAGGA+TGG | - | chr6_2:67201759-67201778 | None:intergenic | 35.0% | |
| GTATTTCTTTAACTGCTGGT+AGG | + | chr6_2:67201767-67201786 | Msa0924750:CDS | 35.0% | |
| CGATGAAGATTCATATGAGA+AGG | + | chr6_2:67201069-67201088 | Msa0924750:five_prime_UTR | 35.0% | |
| TTCATATGAGAAGGATAAGC+GGG | + | chr6_2:67201078-67201097 | Msa0924750:five_prime_UTR | 35.0% | |
| TACAATACCGCCAGTTAAAT+TGG | - | chr6_2:67201545-67201564 | None:intergenic | 35.0% | |
| TCATCTTCATCTAAATCGAG+GGG | - | chr6_2:67201568-67201587 | None:intergenic | 35.0% | |
| CTCATCTTCATCTAAATCGA+GGG | - | chr6_2:67201569-67201588 | None:intergenic | 35.0% | |
| ! | TTTGCTTTGAATAAGCAGGT+TGG | + | chr6_2:67201616-67201635 | Msa0924750:intron | 35.0% |
| TAAAGAAATACCAGCAGGAT+GGG | - | chr6_2:67201758-67201777 | None:intergenic | 35.0% | |
| TTAAAGAAATACCAGCAGGA+TGG | - | chr6_2:67201759-67201778 | None:intergenic | 35.0% | |
| GTATTTCTTTAACTGCTGGT+AGG | + | chr6_2:67201767-67201786 | Msa0924750:CDS | 35.0% | |
| ! | TCGTGTTTCTTTTCCTGTTC+CGG | - | chr6_2:67201052-67201071 | None:intergenic | 40.0% |
| GGAGATATTGGAAGAAGAAG+AGG | + | chr6_2:67201168-67201187 | Msa0924750:CDS | 40.0% | |
| GATATTGGAAGAAGAAGAGG+AGG | + | chr6_2:67201171-67201190 | Msa0924750:CDS | 40.0% | |
| GAACGCCGCTTATACATAAA+TGG | - | chr6_2:67201306-67201325 | None:intergenic | 40.0% | |
| TGGTTGTGTGTTTAAGAACC+AGG | + | chr6_2:67201329-67201348 | Msa0924750:CDS | 40.0% | |
| TAAATTGGTACCAGGTGGAT+GGG | - | chr6_2:67201530-67201549 | None:intergenic | 40.0% | |
| TTAAATTGGTACCAGGTGGA+TGG | - | chr6_2:67201531-67201550 | None:intergenic | 40.0% | |
| GCTCATCTTCATCTAAATCG+AGG | - | chr6_2:67201570-67201589 | None:intergenic | 40.0% | |
| !!! | CGCAGAGTTTTTTGAGAGTA+GGG | - | chr6_2:67201594-67201613 | None:intergenic | 40.0% |
| !!! | TCGCAGAGTTTTTTGAGAGT+AGG | - | chr6_2:67201595-67201614 | None:intergenic | 40.0% |
| ! | CGAGTTTGCTTTGAATAAGC+AGG | + | chr6_2:67201612-67201631 | Msa0924750:CDS | 40.0% |
| GCAGTTAAAGAAATACCAGC+AGG | - | chr6_2:67201763-67201782 | None:intergenic | 40.0% | |
| GCTGGTATTTCTTTAACTGC+TGG | + | chr6_2:67201763-67201782 | Msa0924750:CDS | 40.0% | |
| !! | ACTTTTCAAGCAACAGGGAA+AGG | + | chr6_2:67201802-67201821 | Msa0924750:CDS | 40.0% |
| GTCTGGAAAGTTGTTAGATC+AGG | - | chr6_2:67201832-67201851 | None:intergenic | 40.0% | |
| CATCTTGAACTACATGAGTC+TGG | - | chr6_2:67201849-67201868 | None:intergenic | 40.0% | |
| CAGACTCATGTAGTTCAAGA+TGG | + | chr6_2:67201847-67201866 | Msa0924750:CDS | 40.0% | |
| ! | TCGTGTTTCTTTTCCTGTTC+CGG | - | chr6_2:67201052-67201071 | None:intergenic | 40.0% |
| GGAGATATTGGAAGAAGAAG+AGG | + | chr6_2:67201168-67201187 | Msa0924750:CDS | 40.0% | |
| GATATTGGAAGAAGAAGAGG+AGG | + | chr6_2:67201171-67201190 | Msa0924750:CDS | 40.0% | |
| GAACGCCGCTTATACATAAA+TGG | - | chr6_2:67201306-67201325 | None:intergenic | 40.0% | |
| TGGTTGTGTGTTTAAGAACC+AGG | + | chr6_2:67201329-67201348 | Msa0924750:CDS | 40.0% | |
| TAAATTGGTACCAGGTGGAT+GGG | - | chr6_2:67201530-67201549 | None:intergenic | 40.0% | |
| TTAAATTGGTACCAGGTGGA+TGG | - | chr6_2:67201531-67201550 | None:intergenic | 40.0% | |
| GCTCATCTTCATCTAAATCG+AGG | - | chr6_2:67201570-67201589 | None:intergenic | 40.0% | |
| !!! | CGCAGAGTTTTTTGAGAGTA+GGG | - | chr6_2:67201594-67201613 | None:intergenic | 40.0% |
| !!! | TCGCAGAGTTTTTTGAGAGT+AGG | - | chr6_2:67201595-67201614 | None:intergenic | 40.0% |
| ! | CGAGTTTGCTTTGAATAAGC+AGG | + | chr6_2:67201612-67201631 | Msa0924750:CDS | 40.0% |
| GCAGTTAAAGAAATACCAGC+AGG | - | chr6_2:67201763-67201782 | None:intergenic | 40.0% | |
| GCTGGTATTTCTTTAACTGC+TGG | + | chr6_2:67201763-67201782 | Msa0924750:CDS | 40.0% | |
| !! | ACTTTTCAAGCAACAGGGAA+AGG | + | chr6_2:67201802-67201821 | Msa0924750:CDS | 40.0% |
| GTCTGGAAAGTTGTTAGATC+AGG | - | chr6_2:67201832-67201851 | None:intergenic | 40.0% | |
| CATCTTGAACTACATGAGTC+TGG | - | chr6_2:67201849-67201868 | None:intergenic | 40.0% | |
| CAGACTCATGTAGTTCAAGA+TGG | + | chr6_2:67201847-67201866 | Msa0924750:CDS | 40.0% | |
| TCATGAAGGAGGAGGATAAG+CGG | + | chr6_2:67201104-67201123 | Msa0924750:exon | 45.0% | |
| GAAGGAGGAGGATATCATCT+GGG | + | chr6_2:67201135-67201154 | Msa0924750:CDS | 45.0% | |
| GGATATCATCTGGGAGAAGA+AGG | + | chr6_2:67201144-67201163 | Msa0924750:CDS | 45.0% | |
| TATCATCTGGGAGAAGAAGG+AGG | + | chr6_2:67201147-67201166 | Msa0924750:CDS | 45.0% | |
| GGAGAAGAAGGAGGAGATAT+TGG | + | chr6_2:67201156-67201175 | Msa0924750:CDS | 45.0% | |
| AGAAGAGGAGGAAGAAGAAG+AGG | + | chr6_2:67201183-67201202 | Msa0924750:CDS | 45.0% | |
| AAGAAGAGGAGGAGGATAAC+TGG | + | chr6_2:67201197-67201216 | Msa0924750:CDS | 45.0% | |
| AGAAGAGGAGGAGGATAACT+GGG | + | chr6_2:67201198-67201217 | Msa0924750:CDS | 45.0% | |
| GAGGAGGATAACTGGGATAA+GGG | + | chr6_2:67201205-67201224 | Msa0924750:CDS | 45.0% | |
| AGGAGGATAACTGGGATAAG+GGG | + | chr6_2:67201206-67201225 | Msa0924750:CDS | 45.0% | |
| ATGTATAAGCGGCGTTCTGA+TGG | + | chr6_2:67201309-67201328 | Msa0924750:CDS | 45.0% | |
| GTGTGTTTAAGAACCAGGCT+TGG | + | chr6_2:67201334-67201353 | Msa0924750:CDS | 45.0% | |
| ! | GTTTAAGAACCAGGCTTGGT+TGG | + | chr6_2:67201338-67201357 | Msa0924750:CDS | 45.0% |
| CCAGTTAAATTGGTACCAGG+TGG | - | chr6_2:67201535-67201554 | None:intergenic | 45.0% | |
| CCACCTGGTACCAATTTAAC+TGG | + | chr6_2:67201532-67201551 | Msa0924750:CDS | 45.0% | |
| CCTGGTACCAATTTAACTGG+CGG | + | chr6_2:67201535-67201554 | Msa0924750:CDS | 45.0% | |
| TCATGAAGGAGGAGGATAAG+CGG | + | chr6_2:67201104-67201123 | Msa0924750:exon | 45.0% | |
| GAAGGAGGAGGATATCATCT+GGG | + | chr6_2:67201135-67201154 | Msa0924750:CDS | 45.0% | |
| GGATATCATCTGGGAGAAGA+AGG | + | chr6_2:67201144-67201163 | Msa0924750:CDS | 45.0% | |
| TATCATCTGGGAGAAGAAGG+AGG | + | chr6_2:67201147-67201166 | Msa0924750:CDS | 45.0% | |
| GGAGAAGAAGGAGGAGATAT+TGG | + | chr6_2:67201156-67201175 | Msa0924750:CDS | 45.0% | |
| AGAAGAGGAGGAAGAAGAAG+AGG | + | chr6_2:67201183-67201202 | Msa0924750:CDS | 45.0% | |
| AAGAAGAGGAGGAGGATAAC+TGG | + | chr6_2:67201197-67201216 | Msa0924750:CDS | 45.0% | |
| AGAAGAGGAGGAGGATAACT+GGG | + | chr6_2:67201198-67201217 | Msa0924750:CDS | 45.0% | |
| GAGGAGGATAACTGGGATAA+GGG | + | chr6_2:67201205-67201224 | Msa0924750:CDS | 45.0% | |
| AGGAGGATAACTGGGATAAG+GGG | + | chr6_2:67201206-67201225 | Msa0924750:CDS | 45.0% | |
| ATGTATAAGCGGCGTTCTGA+TGG | + | chr6_2:67201309-67201328 | Msa0924750:CDS | 45.0% | |
| GTGTGTTTAAGAACCAGGCT+TGG | + | chr6_2:67201334-67201353 | Msa0924750:CDS | 45.0% | |
| ! | GTTTAAGAACCAGGCTTGGT+TGG | + | chr6_2:67201338-67201357 | Msa0924750:CDS | 45.0% |
| CCAGTTAAATTGGTACCAGG+TGG | - | chr6_2:67201535-67201554 | None:intergenic | 45.0% | |
| CCACCTGGTACCAATTTAAC+TGG | + | chr6_2:67201532-67201551 | Msa0924750:CDS | 45.0% | |
| CCTGGTACCAATTTAACTGG+CGG | + | chr6_2:67201535-67201554 | Msa0924750:CDS | 45.0% | |
| TGTGAAATCGGAACCGGAAC+AGG | + | chr6_2:67201036-67201055 | Msa0924750:five_prime_UTR | 50.0% | |
| GGATAAGCGGGACTTCATGA+AGG | + | chr6_2:67201090-67201109 | Msa0924750:exon | 50.0% | |
| TAAGCGGGACTTCATGAAGG+AGG | + | chr6_2:67201093-67201112 | Msa0924750:exon | 50.0% | |
| CATGAAGGAGGAGGATAAGC+GGG | + | chr6_2:67201105-67201124 | Msa0924750:exon | 50.0% | |
| CGAAGGAGGAGGATATCATC+TGG | + | chr6_2:67201134-67201153 | Msa0924750:CDS | 50.0% | |
| AGAGGAGGAAGAAGAAGAGG+AGG | + | chr6_2:67201186-67201205 | Msa0924750:CDS | 50.0% | |
| GGAGGAGGATAACTGGGATA+AGG | + | chr6_2:67201204-67201223 | Msa0924750:CDS | 50.0% | |
| CTCTCTCGCGATCTAAGTGT+AGG | + | chr6_2:67201393-67201412 | Msa0924750:intron | 50.0% | |
| CCGCCAGTTAAATTGGTACC+AGG | - | chr6_2:67201538-67201557 | None:intergenic | 50.0% | |
| CCGGTTCCGATTTCACACTT+TGG | - | chr6_2:67201033-67201052 | None:intergenic | 50.0% | |
| TGTGAAATCGGAACCGGAAC+AGG | + | chr6_2:67201036-67201055 | Msa0924750:five_prime_UTR | 50.0% | |
| GGATAAGCGGGACTTCATGA+AGG | + | chr6_2:67201090-67201109 | Msa0924750:exon | 50.0% | |
| TAAGCGGGACTTCATGAAGG+AGG | + | chr6_2:67201093-67201112 | Msa0924750:exon | 50.0% | |
| CATGAAGGAGGAGGATAAGC+GGG | + | chr6_2:67201105-67201124 | Msa0924750:exon | 50.0% | |
| CGAAGGAGGAGGATATCATC+TGG | + | chr6_2:67201134-67201153 | Msa0924750:CDS | 50.0% | |
| AGAGGAGGAAGAAGAAGAGG+AGG | + | chr6_2:67201186-67201205 | Msa0924750:CDS | 50.0% | |
| GGAGGAGGATAACTGGGATA+AGG | + | chr6_2:67201204-67201223 | Msa0924750:CDS | 50.0% | |
| CTCTCTCGCGATCTAAGTGT+AGG | + | chr6_2:67201393-67201412 | Msa0924750:intron | 50.0% | |
| CCGCCAGTTAAATTGGTACC+AGG | - | chr6_2:67201538-67201557 | None:intergenic | 50.0% | |
| GGATAAGCGGGACTTCACGA+AGG | + | chr6_2:67201117-67201136 | Msa0924750:CDS | 55.0% | |
| TAAGCGGGACTTCACGAAGG+AGG | + | chr6_2:67201120-67201139 | Msa0924750:CDS | 55.0% | |
| GGAGGAAGAAGAAGAGGAGG+AGG | + | chr6_2:67201189-67201208 | Msa0924750:CDS | 55.0% | |
| GTCAAGTGTACCCATCCTGC+TGG | + | chr6_2:67201745-67201764 | Msa0924750:CDS | 55.0% | |
| GGATAAGCGGGACTTCACGA+AGG | + | chr6_2:67201117-67201136 | Msa0924750:CDS | 55.0% | |
| TAAGCGGGACTTCACGAAGG+AGG | + | chr6_2:67201120-67201139 | Msa0924750:CDS | 55.0% | |
| GGAGGAAGAAGAAGAGGAGG+AGG | + | chr6_2:67201189-67201208 | Msa0924750:CDS | 55.0% | |
| GTCAAGTGTACCCATCCTGC+TGG | + | chr6_2:67201745-67201764 | Msa0924750:CDS | 55.0% | |
| GCGGGACTTCATGAAGGAGG+AGG | + | chr6_2:67201096-67201115 | Msa0924750:exon | 60.0% | |
| CCTCACGATCCAACCAAGCC+TGG | - | chr6_2:67201350-67201369 | None:intergenic | 60.0% | |
| ! | CCAGGCTTGGTTGGATCGTG+AGG | + | chr6_2:67201347-67201366 | Msa0924750:CDS | 60.0% |
| GATGCTATCGCCCATCCACC+TGG | + | chr6_2:67201517-67201536 | Msa0924750:CDS | 60.0% | |
| GCGGGACTTCATGAAGGAGG+AGG | + | chr6_2:67201096-67201115 | Msa0924750:exon | 60.0% | |
| CCTCACGATCCAACCAAGCC+TGG | - | chr6_2:67201350-67201369 | None:intergenic | 60.0% | |
| ! | CCAGGCTTGGTTGGATCGTG+AGG | + | chr6_2:67201347-67201366 | Msa0924750:CDS | 60.0% |
| GATGCTATCGCCCATCCACC+TGG | + | chr6_2:67201517-67201536 | Msa0924750:CDS | 60.0% | |
| GCGGGACTTCACGAAGGAGG+AGG | + | chr6_2:67201123-67201142 | Msa0924750:CDS | 65.0% | |
| GCGGGACTTCACGAAGGAGG+AGG | + | chr6_2:67201123-67201142 | Msa0924750:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 67201032 | 67201906 | 67201032 | ID=Msa0924750;Name=Msa0924750 |
| chr6_2 | mRNA | 67201032 | 67201906 | 67201032 | ID=Msa0924750-mRNA-1;Parent=Msa0924750;Name=Msa0924750-mRNA-1;_AED=0.10;_eAED=0.24;_QI=74|0|0|1|0.66|0.5|4|0|202 |
| chr6_2 | exon | 67201032 | 67201258 | 67201032 | ID=Msa0924750-mRNA-1:exon:10614;Parent=Msa0924750-mRNA-1 |
| chr6_2 | exon | 67201270 | 67201410 | 67201270 | ID=Msa0924750-mRNA-1:exon:10615;Parent=Msa0924750-mRNA-1 |
| chr6_2 | exon | 67201511 | 67201633 | 67201511 | ID=Msa0924750-mRNA-1:exon:10616;Parent=Msa0924750-mRNA-1 |
| chr6_2 | exon | 67201718 | 67201906 | 67201718 | ID=Msa0924750-mRNA-1:exon:10617;Parent=Msa0924750-mRNA-1 |
| chr6_2 | five_prime_UTR | 67201032 | 67201105 | 67201032 | ID=Msa0924750-mRNA-1:five_prime_utr;Parent=Msa0924750-mRNA-1 |
| chr6_2 | CDS | 67201106 | 67201258 | 67201106 | ID=Msa0924750-mRNA-1:cds;Parent=Msa0924750-mRNA-1 |
| chr6_2 | CDS | 67201270 | 67201410 | 67201270 | ID=Msa0924750-mRNA-1:cds;Parent=Msa0924750-mRNA-1 |
| chr6_2 | CDS | 67201511 | 67201633 | 67201511 | ID=Msa0924750-mRNA-1:cds;Parent=Msa0924750-mRNA-1 |
| chr6_2 | CDS | 67201718 | 67201906 | 67201718 | ID=Msa0924750-mRNA-1:cds;Parent=Msa0924750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
