Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926230 | KAG2385341.1 | 69.310 | 290 | 55 | 5 | 1 | 257 | 1 | 289 | 4.18e-135 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926230 | sp|Q8VYZ3|PME53_ARATH | 50.000 | 214 | 82 | 7 | 21 | 214 | 24 | 232 | 4.97e-53 | 179 |
| Msa0926230 | sp|Q8VYZ3|PME53_ARATH | 78.022 | 91 | 19 | 1 | 168 | 257 | 255 | 345 | 2.53e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0900840 | Msa0926230 | 0.817676 | 2.913993e-52 | -8.615850e-47 |
| Msa0926230 | Msa0965810 | 0.824425 | 8.127262e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926230 | MtrunA17_Chr6g0487101 | 75.446 | 224 | 35 | 3 | 1 | 207 | 1 | 221 | 5.07e-103 | 304 |
| Msa0926230 | MtrunA17_Chr6g0487101 | 92.308 | 91 | 6 | 1 | 168 | 257 | 254 | 344 | 2.96e-55 | 182 |
| Msa0926230 | MtrunA17_Chr8g0389771 | 55.856 | 222 | 76 | 4 | 4 | 207 | 1 | 218 | 4.86e-64 | 204 |
| Msa0926230 | MtrunA17_Chr8g0389771 | 85.714 | 91 | 12 | 1 | 168 | 257 | 251 | 341 | 1.21e-51 | 172 |
| Msa0926230 | MtrunA17_Chr5g0446301 | 51.220 | 82 | 40 | 0 | 168 | 249 | 231 | 312 | 6.97e-25 | 101 |
| Msa0926230 | MtrunA17_Chr5g0446301 | 30.345 | 145 | 77 | 2 | 49 | 169 | 20 | 164 | 4.10e-11 | 62.4 |
| Msa0926230 | MtrunA17_Chr1g0194311 | 49.412 | 85 | 43 | 0 | 168 | 252 | 242 | 326 | 3.60e-23 | 97.1 |
| Msa0926230 | MtrunA17_Chr7g0265201 | 42.553 | 94 | 49 | 1 | 168 | 256 | 255 | 348 | 5.16e-23 | 96.7 |
| Msa0926230 | MtrunA17_Chr6g0453551 | 50.575 | 87 | 37 | 3 | 171 | 253 | 177 | 261 | 6.96e-22 | 92.4 |
| Msa0926230 | MtrunA17_Chr5g0399221 | 50.000 | 80 | 40 | 0 | 168 | 247 | 232 | 311 | 1.90e-21 | 92.0 |
| Msa0926230 | MtrunA17_Chr5g0399221 | 37.234 | 94 | 43 | 1 | 92 | 169 | 71 | 164 | 2.36e-12 | 65.9 |
| Msa0926230 | MtrunA17_Chr7g0258341 | 43.011 | 93 | 45 | 1 | 168 | 252 | 253 | 345 | 3.73e-20 | 88.6 |
| Msa0926230 | MtrunA17_Chr7g0217941 | 44.118 | 102 | 49 | 4 | 161 | 256 | 165 | 264 | 2.04e-19 | 85.9 |
| Msa0926230 | MtrunA17_Chr4g0070051 | 45.977 | 87 | 43 | 2 | 173 | 257 | 226 | 310 | 6.22e-19 | 84.7 |
| Msa0926230 | MtrunA17_Chr6g0459791 | 49.315 | 73 | 36 | 1 | 181 | 252 | 2 | 74 | 2.86e-17 | 75.5 |
| Msa0926230 | MtrunA17_Chr7g0265161 | 50.000 | 60 | 30 | 0 | 179 | 238 | 98 | 157 | 2.64e-15 | 73.2 |
| Msa0926230 | MtrunA17_Chr2g0294321 | 42.308 | 78 | 41 | 1 | 168 | 241 | 216 | 293 | 1.03e-14 | 72.8 |
| Msa0926230 | MtrunA17_Chr5g0440901 | 40.260 | 77 | 43 | 1 | 168 | 241 | 66 | 142 | 1.61e-14 | 68.9 |
| Msa0926230 | MtrunA17_Chr4g0025841 | 40.964 | 83 | 46 | 1 | 168 | 247 | 187 | 269 | 4.30e-14 | 70.1 |
| Msa0926230 | MtrunA17_Chr1g0161731 | 27.049 | 244 | 98 | 8 | 78 | 241 | 43 | 286 | 6.12e-14 | 70.5 |
| Msa0926230 | MtrunA17_Chr5g0440881 | 38.636 | 88 | 51 | 1 | 168 | 252 | 10 | 97 | 1.34e-13 | 66.6 |
| Msa0926230 | MtrunA17_Chr6g0466961 | 40.230 | 87 | 50 | 1 | 161 | 247 | 192 | 276 | 2.02e-13 | 68.9 |
| Msa0926230 | MtrunA17_Chr7g0269541 | 34.343 | 99 | 53 | 2 | 166 | 252 | 402 | 500 | 6.05e-13 | 68.2 |
| Msa0926230 | MtrunA17_Chr3g0079351 | 35.000 | 100 | 52 | 3 | 166 | 252 | 372 | 471 | 6.41e-13 | 68.2 |
| Msa0926230 | MtrunA17_Chr5g0440871 | 38.636 | 88 | 51 | 1 | 168 | 252 | 189 | 276 | 1.01e-12 | 67.0 |
| Msa0926230 | MtrunA17_Chr3g0090091 | 34.000 | 100 | 53 | 3 | 166 | 252 | 373 | 472 | 1.55e-12 | 67.0 |
| Msa0926230 | MtrunA17_Chr3g0079361 | 34.000 | 100 | 53 | 3 | 166 | 252 | 372 | 471 | 1.75e-12 | 66.6 |
| Msa0926230 | MtrunA17_Chr6g0459781 | 35.802 | 162 | 72 | 6 | 83 | 213 | 13 | 173 | 1.76e-12 | 64.7 |
| Msa0926230 | MtrunA17_Chr1g0192331 | 35.870 | 92 | 43 | 3 | 168 | 243 | 374 | 465 | 1.81e-12 | 66.6 |
| Msa0926230 | MtrunA17_Chr3g0079341 | 34.000 | 100 | 53 | 3 | 166 | 252 | 372 | 471 | 1.92e-12 | 66.6 |
| Msa0926230 | MtrunA17_Chr7g0234711 | 35.556 | 90 | 46 | 2 | 166 | 243 | 114 | 203 | 1.94e-12 | 65.5 |
| Msa0926230 | MtrunA17_Chr6g0466951 | 38.043 | 92 | 53 | 2 | 161 | 250 | 221 | 310 | 3.73e-12 | 65.5 |
| Msa0926230 | MtrunA17_Chr3g0080381 | 32.039 | 103 | 57 | 3 | 166 | 255 | 475 | 577 | 1.30e-11 | 64.3 |
| Msa0926230 | MtrunA17_Chr7g0269511 | 34.951 | 103 | 54 | 3 | 166 | 255 | 411 | 513 | 1.33e-11 | 64.3 |
| Msa0926230 | MtrunA17_Chr5g0444991 | 41.538 | 65 | 38 | 0 | 174 | 238 | 5 | 69 | 1.38e-11 | 59.3 |
| Msa0926230 | MtrunA17_Chr8g0354911 | 34.021 | 97 | 52 | 2 | 168 | 252 | 461 | 557 | 1.39e-11 | 64.3 |
| Msa0926230 | MtrunA17_Chr4g0069841 | 36.047 | 86 | 43 | 2 | 168 | 241 | 364 | 449 | 2.43e-11 | 63.5 |
| Msa0926230 | MtrunA17_Chr7g0272141 | 45.763 | 59 | 32 | 0 | 183 | 241 | 417 | 475 | 4.38e-11 | 62.8 |
| Msa0926230 | MtrunA17_Chr4g0037751 | 39.437 | 71 | 42 | 1 | 183 | 252 | 249 | 319 | 5.40e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926230 | AT5G19730.1 | 50.000 | 214 | 82 | 7 | 21 | 214 | 24 | 232 | 5.05e-54 | 179 |
| Msa0926230 | AT5G19730.1 | 78.022 | 91 | 19 | 1 | 168 | 257 | 255 | 345 | 2.58e-47 | 161 |
| Msa0926230 | AT2G21610.1 | 48.235 | 85 | 44 | 0 | 168 | 252 | 206 | 290 | 3.31e-27 | 107 |
| Msa0926230 | AT2G21610.2 | 48.235 | 85 | 44 | 0 | 168 | 252 | 211 | 295 | 3.78e-27 | 107 |
| Msa0926230 | AT2G36710.1 | 29.242 | 277 | 100 | 10 | 57 | 249 | 76 | 340 | 1.12e-25 | 104 |
| Msa0926230 | AT5G55590.2 | 46.250 | 80 | 43 | 0 | 168 | 247 | 252 | 331 | 1.37e-22 | 95.1 |
| Msa0926230 | AT1G05310.1 | 53.846 | 78 | 35 | 1 | 181 | 257 | 275 | 352 | 2.49e-22 | 95.1 |
| Msa0926230 | AT5G55590.1 | 46.250 | 80 | 43 | 0 | 168 | 247 | 252 | 331 | 3.03e-22 | 94.7 |
| Msa0926230 | AT2G36700.1 | 43.678 | 87 | 47 | 1 | 168 | 252 | 205 | 291 | 6.29e-21 | 90.5 |
| Msa0926230 | AT3G29090.1 | 46.078 | 102 | 47 | 4 | 161 | 256 | 166 | 265 | 1.05e-20 | 89.7 |
| Msa0926230 | AT5G47500.1 | 45.349 | 86 | 46 | 1 | 168 | 252 | 230 | 315 | 6.37e-20 | 88.2 |
| Msa0926230 | AT5G26810.1 | 42.857 | 91 | 46 | 1 | 168 | 252 | 200 | 290 | 2.75e-17 | 80.5 |
| Msa0926230 | AT3G17060.1 | 42.308 | 78 | 41 | 1 | 168 | 241 | 206 | 283 | 1.08e-14 | 73.2 |
| Msa0926230 | AT5G07430.1 | 40.244 | 82 | 48 | 1 | 172 | 252 | 232 | 313 | 6.12e-14 | 71.2 |
| Msa0926230 | AT5G07410.1 | 38.372 | 86 | 52 | 1 | 168 | 252 | 228 | 313 | 1.14e-13 | 70.1 |
| Msa0926230 | AT5G18990.1 | 48.387 | 62 | 32 | 0 | 180 | 241 | 209 | 270 | 1.16e-13 | 70.1 |
| Msa0926230 | AT1G69940.1 | 38.372 | 86 | 52 | 1 | 168 | 252 | 228 | 313 | 1.28e-13 | 70.1 |
| Msa0926230 | AT5G61680.1 | 37.209 | 86 | 53 | 1 | 168 | 252 | 231 | 316 | 2.68e-13 | 69.3 |
| Msa0926230 | AT1G11580.2 | 32.484 | 157 | 82 | 6 | 112 | 252 | 374 | 522 | 7.24e-13 | 68.6 |
| Msa0926230 | AT1G11580.1 | 33.758 | 157 | 80 | 6 | 112 | 252 | 353 | 501 | 7.39e-13 | 68.2 |
| Msa0926230 | AT3G59010.1 | 37.363 | 91 | 51 | 2 | 166 | 252 | 384 | 472 | 1.85e-12 | 67.0 |
| Msa0926230 | AT3G10720.2 | 36.047 | 86 | 43 | 2 | 168 | 241 | 464 | 549 | 2.01e-12 | 67.0 |
| Msa0926230 | AT3G10720.1 | 36.047 | 86 | 43 | 2 | 168 | 241 | 108 | 193 | 3.22e-12 | 65.1 |
| Msa0926230 | AT5G07420.1 | 39.024 | 82 | 49 | 1 | 172 | 252 | 232 | 313 | 3.82e-12 | 65.9 |
| Msa0926230 | AT2G19150.1 | 45.833 | 72 | 37 | 1 | 181 | 250 | 219 | 290 | 1.15e-11 | 64.3 |
| Msa0926230 | AT2G19150.2 | 44.776 | 67 | 37 | 0 | 181 | 247 | 219 | 285 | 1.49e-11 | 63.5 |
| Msa0926230 | AT3G24130.1 | 41.935 | 62 | 36 | 0 | 180 | 241 | 214 | 275 | 1.78e-11 | 63.5 |
| Msa0926230 | AT4G02330.1 | 32.381 | 105 | 58 | 3 | 166 | 257 | 418 | 522 | 1.83e-11 | 64.3 |
| Msa0926230 | AT5G04970.1 | 33.721 | 86 | 45 | 2 | 168 | 241 | 469 | 554 | 3.76e-11 | 63.2 |
| Msa0926230 | AT2G43050.1 | 36.709 | 79 | 47 | 1 | 166 | 241 | 371 | 449 | 8.33e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTACAAGTCAATATTTC+TGG | 0.153147 | 6_2:-69782521 | None:intergenic |
| TTCCTAAAGGATGGTATAAT+TGG | 0.166771 | 6_2:+69782366 | Msa0926230:CDS |
| TGTCTTTGCTTATACATATA+TGG | 0.241934 | 6_2:+69782331 | Msa0926230:CDS |
| GACAACTCTAACAAGATTAA+TGG | 0.267014 | 6_2:-69779393 | None:intergenic |
| GTTGATAAGAATCCTTCTTT+TGG | 0.287967 | 6_2:+69779329 | Msa0926230:CDS |
| GCAAAGACAACTCGTGAAAA+AGG | 0.294337 | 6_2:-69782317 | None:intergenic |
| GTCTGCTCTTGTTGTATTGT+TGG | 0.317261 | 6_2:-69779201 | None:intergenic |
| CAGAACAACAATTCATGAAA+TGG | 0.331842 | 6_2:+69779228 | Msa0926230:CDS |
| AACTGTAAGGTCACGGGGTC+AGG | 0.335283 | 6_2:+69782266 | Msa0926230:CDS |
| CCCCAATTATACCATCCTTT+AGG | 0.373131 | 6_2:-69782368 | None:intergenic |
| TCCTAAAGGATGGTATAATT+GGG | 0.373364 | 6_2:+69782367 | Msa0926230:CDS |
| TTTCTCATTTGTAAACTGTA+AGG | 0.409609 | 6_2:+69782253 | Msa0926230:CDS |
| GATACATACATTTCACGGTT+AGG | 0.424041 | 6_2:-69782395 | None:intergenic |
| AGATACAACAATTGTTCAAT+GGG | 0.424805 | 6_2:+69780264 | Msa0926230:intron |
| ACCTATGATTACGCGCACTA+TGG | 0.427225 | 6_2:+69778973 | Msa0926230:five_prime_UTR |
| TGATGGAGAATGGTATGTTT+TGG | 0.430105 | 6_2:-69779023 | None:intergenic |
| ACTATACCTTGGAAGAGCTT+GGG | 0.436429 | 6_2:+69782292 | Msa0926230:CDS |
| ACCATAGTGCGCGTAATCAT+AGG | 0.438553 | 6_2:-69778974 | None:intergenic |
| CACTATACCTTGGAAGAGCT+TGG | 0.450234 | 6_2:+69782291 | Msa0926230:CDS |
| ATCCAGAAATATTGACTTGT+AGG | 0.451462 | 6_2:+69782519 | Msa0926230:three_prime_UTR |
| GGGAATCCATTGGGAACATA+TGG | 0.456454 | 6_2:+69780316 | Msa0926230:CDS |
| GTTCCCAATGGATTCCCTCT+TGG | 0.460412 | 6_2:-69780310 | None:intergenic |
| CAGATACAACAATTGTTCAA+TGG | 0.461738 | 6_2:+69780263 | Msa0926230:intron |
| AGAACAACAATTCATGAAAT+GGG | 0.467696 | 6_2:+69779229 | Msa0926230:CDS |
| ATGAAGATACATACATTTCA+CGG | 0.472479 | 6_2:-69782400 | None:intergenic |
| TCTTAAACATACTGTTTACA+AGG | 0.475947 | 6_2:+69779268 | Msa0926230:CDS |
| ATGTTCTTAGCAATGAAATA+AGG | 0.476305 | 6_2:-69780364 | None:intergenic |
| ACAATACATTGTCATACAAA+AGG | 0.482414 | 6_2:+69779140 | Msa0926230:CDS |
| GACAATATCATCATTCCTAA+AGG | 0.492438 | 6_2:+69782353 | Msa0926230:CDS |
| TTATGAAAATGAAGAAATGA+TGG | 0.496118 | 6_2:-69779040 | None:intergenic |
| CATGCAATAGCAAGAAATAC+AGG | 0.503277 | 6_2:+69782185 | Msa0926230:CDS |
| AATGGATTCCCTCTTGGACC+AGG | 0.506866 | 6_2:-69780304 | None:intergenic |
| CCGATACGTTCTACTCGAAA+CGG | 0.517243 | 6_2:+69779170 | Msa0926230:CDS |
| TCTTGTTAGAGTTGTCATCA+AGG | 0.521394 | 6_2:+69779400 | Msa0926230:CDS |
| AATGGAAGGAAGAGAATCAA+TGG | 0.525259 | 6_2:-69779375 | None:intergenic |
| GGTGACACTGCTGCAACACC+TGG | 0.530589 | 6_2:+69780286 | Msa0926230:CDS |
| TTTGTAAACTGTAAGGTCAC+GGG | 0.536299 | 6_2:+69782260 | Msa0926230:CDS |
| GTATCAAAATCTCCAAAAGA+AGG | 0.540547 | 6_2:-69779341 | None:intergenic |
| GGTCCAAGAGGGAATCCATT+GGG | 0.541904 | 6_2:+69780307 | Msa0926230:CDS |
| GTTGTCATCAAGGTTCATGC+AGG | 0.544916 | 6_2:+69779410 | Msa0926230:CDS |
| TATTGGTGCAGAGTCCTCAA+TGG | 0.555928 | 6_2:+69779951 | Msa0926230:intron |
| AATGAAGAAATGATGGAGAA+TGG | 0.556499 | 6_2:-69779033 | None:intergenic |
| TCCAGAAATATTGACTTGTA+GGG | 0.558592 | 6_2:+69782520 | Msa0926230:three_prime_UTR |
| CTATACCTTGGAAGAGCTTG+GGG | 0.573481 | 6_2:+69782293 | Msa0926230:CDS |
| ATTTGTAAACTGTAAGGTCA+CGG | 0.575614 | 6_2:+69782259 | Msa0926230:CDS |
| AAGGACCCCAAGCTCTTCCA+AGG | 0.578788 | 6_2:-69782298 | None:intergenic |
| ATATCATCATTCCTAAAGGA+TGG | 0.582481 | 6_2:+69782357 | Msa0926230:CDS |
| TTGTCATCAAGGTTCATGCA+GGG | 0.593919 | 6_2:+69779411 | Msa0926230:CDS |
| GCTGAACCATATGTTCCCAA+TGG | 0.599059 | 6_2:-69780322 | None:intergenic |
| GAGCACTAACAGCACAAGGA+AGG | 0.601529 | 6_2:+69782207 | Msa0926230:CDS |
| TGGCAACACATTACAAGTGA+CGG | 0.605008 | 6_2:+69782496 | Msa0926230:three_prime_UTR |
| AGCAGTATGTTACAAGACAC+AGG | 0.614754 | 6_2:+69782230 | Msa0926230:CDS |
| CCTAAAGGATGGTATAATTG+GGG | 0.616488 | 6_2:+69782368 | Msa0926230:CDS |
| ATCCCAGAGTCATACCATTG+AGG | 0.620712 | 6_2:-69779965 | None:intergenic |
| CTGCAACACCTGGTCCAAGA+GGG | 0.622017 | 6_2:+69780296 | Msa0926230:CDS |
| TGGTCCAAGAGGGAATCCAT+TGG | 0.624366 | 6_2:+69780306 | Msa0926230:CDS |
| TGTCATCAAGGTTCATGCAG+GGG | 0.633769 | 6_2:+69779412 | Msa0926230:CDS |
| ACTCTAACAAGATTAATGGA+AGG | 0.635519 | 6_2:-69779389 | None:intergenic |
| GGGTCAGGAGCACTATACCT+TGG | 0.638122 | 6_2:+69782281 | Msa0926230:CDS |
| GCTGCAACACCTGGTCCAAG+AGG | 0.644109 | 6_2:+69780295 | Msa0926230:CDS |
| CCGTTTCGAGTAGAACGTAT+CGG | 0.645496 | 6_2:-69779170 | None:intergenic |
| ACAGGAGCACTAACAGCACA+AGG | 0.679858 | 6_2:+69782203 | Msa0926230:CDS |
| TTGTAAACTGTAAGGTCACG+GGG | 0.696317 | 6_2:+69782261 | Msa0926230:CDS |
| GATACAACAATTGTTCAATG+GGG | 0.710613 | 6_2:+69780265 | Msa0926230:intron |
| ATAGTATATAGACACACACA+TGG | 0.766144 | 6_2:+69782476 | Msa0926230:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACATAGTTTTTTTTAAT+TGG | + | chr6_2:69780433-69780452 | Msa0926230:intron | 10.0% |
| !!! | AATATGAATAGTTTTTTTTA+GGG | - | chr6_2:69781237-69781256 | None:intergenic | 10.0% |
| !! | TATTCCTAATTATATTATAA+TGG | + | chr6_2:69781349-69781368 | Msa0926230:intron | 10.0% |
| !! | ATCAAATTATTCAAAAATGT+TGG | - | chr6_2:69779722-69779741 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATACCCTTAT+TGG | + | chr6_2:69779934-69779953 | Msa0926230:intron | 15.0% |
| !!! | ATTTTATATTATTCAAGCTT+AGG | - | chr6_2:69780038-69780057 | None:intergenic | 15.0% |
| !!! | ATATGAATAGTTTTTTTTAG+GGG | - | chr6_2:69781236-69781255 | None:intergenic | 15.0% |
| !!! | GAATATGAATAGTTTTTTTT+AGG | - | chr6_2:69781238-69781257 | None:intergenic | 15.0% |
| !! | TAATATAATTAGGAATATGT+TGG | - | chr6_2:69781346-69781365 | None:intergenic | 15.0% |
| !! | GTTTCCATTATAATATAATT+AGG | - | chr6_2:69781356-69781375 | None:intergenic | 15.0% |
| !! | AACAATTATGAAACAAATTT+AGG | + | chr6_2:69781433-69781452 | Msa0926230:intron | 15.0% |
| !!! | ATTTTTTTTGGTATCAATTT+CGG | - | chr6_2:69781991-69782010 | None:intergenic | 15.0% |
| !! | TTATGAAAATGAAGAAATGA+TGG | - | chr6_2:69779043-69779062 | None:intergenic | 20.0% |
| !! | TGTAAATAAAGTTTGACTAA+GGG | - | chr6_2:69779624-69779643 | None:intergenic | 20.0% |
| !! | ATGTAAATAAAGTTTGACTA+AGG | - | chr6_2:69779625-69779644 | None:intergenic | 20.0% |
| !!! | GTTTTAACATACAATTTTGT+TGG | + | chr6_2:69779806-69779825 | Msa0926230:intron | 20.0% |
| !!! | GCTAATTTTATTTTTTCCAT+TGG | + | chr6_2:69780669-69780688 | Msa0926230:intron | 20.0% |
| !! | TATAAAGATTGTTACATTGA+AGG | + | chr6_2:69780885-69780904 | Msa0926230:intron | 20.0% |
| !! | ACATTACATGTATTAAATGA+TGG | - | chr6_2:69780968-69780987 | None:intergenic | 20.0% |
| !! | TTTGGTATAAAGAATCATTT+AGG | + | chr6_2:69781005-69781024 | Msa0926230:intron | 20.0% |
| !!! | AAGAATCATTTAGGTTTTTT+CGG | + | chr6_2:69781014-69781033 | Msa0926230:intron | 20.0% |
| !!! | AGAATTTTTCTTGTTCTTAT+TGG | + | chr6_2:69781281-69781300 | Msa0926230:intron | 20.0% |
| !!! | TGCAATAAAAAATTTGAAAC+TGG | - | chr6_2:69781308-69781327 | None:intergenic | 20.0% |
| !! | TCACTTTATAAATACTTTGT+TGG | - | chr6_2:69781507-69781526 | None:intergenic | 20.0% |
| !! | ATTTACAATTACATCTCTTT+AGG | + | chr6_2:69781526-69781545 | Msa0926230:intron | 20.0% |
| !! | TTTACAATTACATCTCTTTA+GGG | + | chr6_2:69781527-69781546 | Msa0926230:intron | 20.0% |
| !! | TTCTTAATCTTTCATGATTT+AGG | + | chr6_2:69781645-69781664 | Msa0926230:intron | 20.0% |
| !!! | TCTTAAAGTTCGATTTTTTT+TGG | - | chr6_2:69782003-69782022 | None:intergenic | 20.0% |
| !! | TTTTGTATGACAATGTATTG+TGG | - | chr6_2:69779141-69779160 | None:intergenic | 25.0% |
| ! | ACAATACATTGTCATACAAA+AGG | + | chr6_2:69779140-69779159 | Msa0926230:CDS | 25.0% |
| ! | AGAACAACAATTCATGAAAT+GGG | + | chr6_2:69779229-69779248 | Msa0926230:CDS | 25.0% |
| ! | TCTTAAACATACTGTTTACA+AGG | + | chr6_2:69779268-69779287 | Msa0926230:CDS | 25.0% |
| !!! | TGTCCAAAGTTTTTAATTTG+CGG | + | chr6_2:69779491-69779510 | Msa0926230:intron | 25.0% |
| !! | GTCAAACTTTATTTACATCT+CGG | + | chr6_2:69779627-69779646 | Msa0926230:intron | 25.0% |
| ! | AACTATTAGAAGAGAAATCT+TGG | - | chr6_2:69780166-69780185 | None:intergenic | 25.0% |
| !! | ATGGTTATGAAGGATTTTAA+AGG | - | chr6_2:69780229-69780248 | None:intergenic | 25.0% |
| ! | AGATACAACAATTGTTCAAT+GGG | + | chr6_2:69780264-69780283 | Msa0926230:intron | 25.0% |
| ! | ATGTTCTTAGCAATGAAATA+AGG | - | chr6_2:69780367-69780386 | None:intergenic | 25.0% |
| ! | AAAACCTTCAAGTCAAAATA+AGG | + | chr6_2:69780508-69780527 | Msa0926230:intron | 25.0% |
| ! | AAACCTTCAAGTCAAAATAA+GGG | + | chr6_2:69780509-69780528 | Msa0926230:intron | 25.0% |
| ! | CTAATTATTGCTAGCAATAA+TGG | + | chr6_2:69780532-69780551 | Msa0926230:intron | 25.0% |
| ! | ATAACGATGAAAATTACCAA+TGG | - | chr6_2:69780688-69780707 | None:intergenic | 25.0% |
| !! | ACACATTCACAAAATTTTAC+AGG | - | chr6_2:69780722-69780741 | None:intergenic | 25.0% |
| !! | ATTCTTAGGGTGTAAATTTT+TGG | + | chr6_2:69780821-69780840 | Msa0926230:intron | 25.0% |
| !! | TTCTTAGGGTGTAAATTTTT+GGG | + | chr6_2:69780822-69780841 | Msa0926230:intron | 25.0% |
| ! | GATACACTTTATGATCATAT+TGG | + | chr6_2:69780852-69780871 | Msa0926230:intron | 25.0% |
| ! | TACATGTAATGTAGAATCAT+AGG | + | chr6_2:69780976-69780995 | Msa0926230:intron | 25.0% |
| ! | ACATGTAATGTAGAATCATA+GGG | + | chr6_2:69780977-69780996 | Msa0926230:intron | 25.0% |
| !!! | TAGAATCATAGGGTTTTTTT+TGG | + | chr6_2:69780987-69781006 | Msa0926230:intron | 25.0% |
| !!! | AAAAAAAGTGCCCTTTAAAT+TGG | - | chr6_2:69781148-69781167 | None:intergenic | 25.0% |
| !! | TCAAAAGAGTCTTATATTAG+AGG | - | chr6_2:69781262-69781281 | None:intergenic | 25.0% |
| !! | TATGAAACAAATTTAGGATG+AGG | + | chr6_2:69781439-69781458 | Msa0926230:intron | 25.0% |
| !! | TGATAATTAGCTTCAAGATT+TGG | - | chr6_2:69781605-69781624 | None:intergenic | 25.0% |
| ! | GTAGACAACTAATCAAATTA+GGG | - | chr6_2:69781885-69781904 | None:intergenic | 25.0% |
| ! | AGTAGACAACTAATCAAATT+AGG | - | chr6_2:69781886-69781905 | None:intergenic | 25.0% |
| !!! | AATCGAACTTTAAGACTTTA+AGG | + | chr6_2:69782008-69782027 | Msa0926230:intron | 25.0% |
| !! | TGTATGTGACACTTTTAAAT+AGG | + | chr6_2:69782151-69782170 | Msa0926230:intron | 25.0% |
| !! | GTATGTGACACTTTTAAATA+GGG | + | chr6_2:69782152-69782171 | Msa0926230:intron | 25.0% |
| ! | TTTCTCATTTGTAAACTGTA+AGG | + | chr6_2:69782253-69782272 | Msa0926230:CDS | 25.0% |
| ! | TGTCTTTGCTTATACATATA+TGG | + | chr6_2:69782331-69782350 | Msa0926230:CDS | 25.0% |
| ! | ATGAAGATACATACATTTCA+CGG | - | chr6_2:69782403-69782422 | None:intergenic | 25.0% |
| ! | AAGAAAGTGATAATATAGAG+AGG | - | chr6_2:69782430-69782449 | None:intergenic | 25.0% |
| ! | AATGAAGAAATGATGGAGAA+TGG | - | chr6_2:69779036-69779055 | None:intergenic | 30.0% |
| CAGAACAACAATTCATGAAA+TGG | + | chr6_2:69779228-69779247 | Msa0926230:CDS | 30.0% | |
| !! | GTTGATAAGAATCCTTCTTT+TGG | + | chr6_2:69779329-69779348 | Msa0926230:CDS | 30.0% |
| GTATCAAAATCTCCAAAAGA+AGG | - | chr6_2:69779344-69779363 | None:intergenic | 30.0% | |
| ACTCTAACAAGATTAATGGA+AGG | - | chr6_2:69779392-69779411 | None:intergenic | 30.0% | |
| GACAACTCTAACAAGATTAA+TGG | - | chr6_2:69779396-69779415 | None:intergenic | 30.0% | |
| !! | TTTTCCTTTTGTTTGTAGTG+TGG | + | chr6_2:69779465-69779484 | Msa0926230:intron | 30.0% |
| TGACCGCAAATTAAAAACTT+TGG | - | chr6_2:69779497-69779516 | None:intergenic | 30.0% | |
| ! | GTGATCAAATAAGTGTTGTA+AGG | + | chr6_2:69779546-69779565 | Msa0926230:intron | 30.0% |
| AAGGTAGAAGACATATTGTT+TGG | + | chr6_2:69779565-69779584 | Msa0926230:intron | 30.0% | |
| ! | AAAATGTTGGCTACTCAATT+TGG | - | chr6_2:69779709-69779728 | None:intergenic | 30.0% |
| ! | TTTTTGTCAGAGATGAACTT+TGG | + | chr6_2:69779747-69779766 | Msa0926230:intron | 30.0% |
| TGTAAAGATAGAAACTCACA+AGG | - | chr6_2:69779875-69779894 | None:intergenic | 30.0% | |
| GAATACACGAGATTTGATTA+TGG | - | chr6_2:69780107-69780126 | None:intergenic | 30.0% | |
| !! | TTGTGTGTGTTTTTATGTCT+AGG | + | chr6_2:69780185-69780204 | Msa0926230:intron | 30.0% |
| !! | TGTGTGTGTTTTTATGTCTA+GGG | + | chr6_2:69780186-69780205 | Msa0926230:intron | 30.0% |
| !! | GTTATGAAGGATTTTAAAGG+AGG | - | chr6_2:69780226-69780245 | None:intergenic | 30.0% |
| AAATCCTTCATAACCATAGA+AGG | + | chr6_2:69780232-69780251 | Msa0926230:intron | 30.0% | |
| CAGATACAACAATTGTTCAA+TGG | + | chr6_2:69780263-69780282 | Msa0926230:intron | 30.0% | |
| GATACAACAATTGTTCAATG+GGG | + | chr6_2:69780265-69780284 | Msa0926230:intron | 30.0% | |
| AGCAGCATAAATTTAGAGAT+AGG | + | chr6_2:69780588-69780607 | Msa0926230:intron | 30.0% | |
| AGATTGTTACATTGAAGGTT+CGG | + | chr6_2:69780890-69780909 | Msa0926230:intron | 30.0% | |
| ! | ATGTTGCATTGTTACTTATG+TGG | - | chr6_2:69781040-69781059 | None:intergenic | 30.0% |
| TAACCCCAAATCCAATTTAA+AGG | + | chr6_2:69781134-69781153 | Msa0926230:intron | 30.0% | |
| AACCCCAAATCCAATTTAAA+GGG | + | chr6_2:69781135-69781154 | Msa0926230:intron | 30.0% | |
| AACTCAATGTACATGATGAA+GGG | - | chr6_2:69781180-69781199 | None:intergenic | 30.0% | |
| TAACTCAATGTACATGATGA+AGG | - | chr6_2:69781181-69781200 | None:intergenic | 30.0% | |
| TTCATCATGTACATTGAGTT+AGG | + | chr6_2:69781180-69781199 | Msa0926230:intron | 30.0% | |
| GGGTGAATATGAATAGTTAA+TGG | - | chr6_2:69781216-69781235 | None:intergenic | 30.0% | |
| ! | TTTAAGGTAGGAATGACTTT+AGG | + | chr6_2:69781476-69781495 | Msa0926230:intron | 30.0% |
| TTAAGGTAGGAATGACTTTA+GGG | + | chr6_2:69781477-69781496 | Msa0926230:intron | 30.0% | |
| CTACACTCGATCTTAAATAT+AGG | - | chr6_2:69781680-69781699 | None:intergenic | 30.0% | |
| CGAGTGTAGTAATAATTTGA+TGG | + | chr6_2:69781691-69781710 | Msa0926230:intron | 30.0% | |
| ATTTGTAAACTGTAAGGTCA+CGG | + | chr6_2:69782259-69782278 | Msa0926230:CDS | 30.0% | |
| GACAATATCATCATTCCTAA+AGG | + | chr6_2:69782353-69782372 | Msa0926230:CDS | 30.0% | |
| ATATCATCATTCCTAAAGGA+TGG | + | chr6_2:69782357-69782376 | Msa0926230:CDS | 30.0% | |
| TTCCTAAAGGATGGTATAAT+TGG | + | chr6_2:69782366-69782385 | Msa0926230:CDS | 30.0% | |
| TCCTAAAGGATGGTATAATT+GGG | + | chr6_2:69782367-69782386 | Msa0926230:CDS | 30.0% | |
| ATAGTATATAGACACACACA+TGG | + | chr6_2:69782476-69782495 | Msa0926230:three_prime_UTR | 30.0% | |
| !! | ATCCAGAAATATTGACTTGT+AGG | + | chr6_2:69782519-69782538 | Msa0926230:three_prime_UTR | 30.0% |
| !! | TCCAGAAATATTGACTTGTA+GGG | + | chr6_2:69782520-69782539 | Msa0926230:three_prime_UTR | 30.0% |
| ! | TGATGGAGAATGGTATGTTT+TGG | - | chr6_2:69779026-69779045 | None:intergenic | 35.0% |
| !! | ATGAAATGGGTGAGTTTTGT+TGG | + | chr6_2:69779242-69779261 | Msa0926230:CDS | 35.0% |
| AATGGAAGGAAGAGAATCAA+TGG | - | chr6_2:69779378-69779397 | None:intergenic | 35.0% | |
| TCTTGTTAGAGTTGTCATCA+AGG | + | chr6_2:69779400-69779419 | Msa0926230:CDS | 35.0% | |
| ACAACCACACTACAAACAAA+AGG | - | chr6_2:69779472-69779491 | None:intergenic | 35.0% | |
| !!! | TTTTTAATTTGCGGTCACGT+CGG | + | chr6_2:69779500-69779519 | Msa0926230:intron | 35.0% |
| CGAGATTTGATTATGGAGTT+CGG | - | chr6_2:69780100-69780119 | None:intergenic | 35.0% | |
| ATCTCCTTCTATGGTTATGA+AGG | - | chr6_2:69780239-69780258 | None:intergenic | 35.0% | |
| TTCATAACCATAGAAGGAGA+TGG | + | chr6_2:69780238-69780257 | Msa0926230:intron | 35.0% | |
| TTTCCGCATATATACGATGT+CGG | - | chr6_2:69780491-69780510 | None:intergenic | 35.0% | |
| !!! | TAGCCCTTATTTTGACTTGA+AGG | - | chr6_2:69780515-69780534 | None:intergenic | 35.0% |
| TAAATTTGACGTCTCTAGCA+AGG | - | chr6_2:69780646-69780665 | None:intergenic | 35.0% | |
| TGCTAGAGACGTCAAATTTA+AGG | + | chr6_2:69780646-69780665 | Msa0926230:intron | 35.0% | |
| GCTAGAGACGTCAAATTTAA+GGG | + | chr6_2:69780647-69780666 | Msa0926230:intron | 35.0% | |
| ! | GGTTCGGTTGATTTCATATT+TGG | + | chr6_2:69780906-69780925 | Msa0926230:intron | 35.0% |
| CAATGCAACATAACCTAATC+TGG | + | chr6_2:69781049-69781068 | Msa0926230:intron | 35.0% | |
| TGCCCTTTAAATTGGATTTG+GGG | - | chr6_2:69781140-69781159 | None:intergenic | 35.0% | |
| GTGCCCTTTAAATTGGATTT+GGG | - | chr6_2:69781141-69781160 | None:intergenic | 35.0% | |
| AGTGCCCTTTAAATTGGATT+TGG | - | chr6_2:69781142-69781161 | None:intergenic | 35.0% | |
| ATCATGTACATTGAGTTAGG+TGG | + | chr6_2:69781183-69781202 | Msa0926230:intron | 35.0% | |
| ! | ACAAATTTAGGATGAGGTGA+CGG | + | chr6_2:69781445-69781464 | Msa0926230:intron | 35.0% |
| ! | GGTATTGGATTTGGAGAATT+TGG | - | chr6_2:69781572-69781591 | None:intergenic | 35.0% |
| !! | CTAGTAACAGGTATTGGATT+TGG | - | chr6_2:69781581-69781600 | None:intergenic | 35.0% |
| TTTGGTCTAGTAACAGGTAT+TGG | - | chr6_2:69781587-69781606 | None:intergenic | 35.0% | |
| ! | TCAAGATTTGGTCTAGTAAC+AGG | - | chr6_2:69781593-69781612 | None:intergenic | 35.0% |
| !! | CGAACTTTAAGACTTTAAGG+AGG | + | chr6_2:69782011-69782030 | Msa0926230:intron | 35.0% |
| CATGCAATAGCAAGAAATAC+AGG | + | chr6_2:69782185-69782204 | Msa0926230:CDS | 35.0% | |
| TTTGTAAACTGTAAGGTCAC+GGG | + | chr6_2:69782260-69782279 | Msa0926230:CDS | 35.0% | |
| CCTAAAGGATGGTATAATTG+GGG | + | chr6_2:69782368-69782387 | Msa0926230:CDS | 35.0% | |
| GATACATACATTTCACGGTT+AGG | - | chr6_2:69782398-69782417 | None:intergenic | 35.0% | |
| TCCCTACAAGTCAATATTTC+TGG | - | chr6_2:69782524-69782543 | None:intergenic | 35.0% | |
| ! | GTCTGCTCTTGTTGTATTGT+TGG | - | chr6_2:69779204-69779223 | None:intergenic | 40.0% |
| TTGTCATCAAGGTTCATGCA+GGG | + | chr6_2:69779411-69779430 | Msa0926230:CDS | 40.0% | |
| TTTACATCTCGGATGAGCTT+TGG | + | chr6_2:69779638-69779657 | Msa0926230:intron | 40.0% | |
| !! | CTTTGGTGTTTGTCTGCATT+TGG | + | chr6_2:69779764-69779783 | Msa0926230:intron | 40.0% |
| CAACCGACATCGTATATATG+CGG | + | chr6_2:69780485-69780504 | Msa0926230:intron | 40.0% | |
| !! | TGCTTGTTTTCCAATTGCTC+CGG | - | chr6_2:69780769-69780788 | None:intergenic | 40.0% |
| AGCAATTGGAAAACAAGCAG+TGG | + | chr6_2:69780770-69780789 | Msa0926230:intron | 40.0% | |
| CAGACACAGCATCATTCTTA+GGG | + | chr6_2:69780808-69780827 | Msa0926230:intron | 40.0% | |
| CAATGCTCTCTCTCTATTTG+AGG | + | chr6_2:69780929-69780948 | Msa0926230:intron | 40.0% | |
| ! | GGAGAATTTGGATTAGAGTC+TGG | - | chr6_2:69781560-69781579 | None:intergenic | 40.0% |
| AGCAGTATGTTACAAGACAC+AGG | + | chr6_2:69782230-69782249 | Msa0926230:CDS | 40.0% | |
| TTGTAAACTGTAAGGTCACG+GGG | + | chr6_2:69782261-69782280 | Msa0926230:CDS | 40.0% | |
| ACTATACCTTGGAAGAGCTT+GGG | + | chr6_2:69782292-69782311 | Msa0926230:CDS | 40.0% | |
| GCAAAGACAACTCGTGAAAA+AGG | - | chr6_2:69782320-69782339 | None:intergenic | 40.0% | |
| CCCCAATTATACCATCCTTT+AGG | - | chr6_2:69782371-69782390 | None:intergenic | 40.0% | |
| TGGCAACACATTACAAGTGA+CGG | + | chr6_2:69782496-69782515 | Msa0926230:three_prime_UTR | 40.0% | |
| ACCTATGATTACGCGCACTA+TGG | + | chr6_2:69778973-69778992 | Msa0926230:five_prime_UTR | 45.0% | |
| ACCATAGTGCGCGTAATCAT+AGG | - | chr6_2:69778977-69778996 | None:intergenic | 45.0% | |
| ! | CCGTTTCGAGTAGAACGTAT+CGG | - | chr6_2:69779173-69779192 | None:intergenic | 45.0% |
| CCGATACGTTCTACTCGAAA+CGG | + | chr6_2:69779170-69779189 | Msa0926230:CDS | 45.0% | |
| GTTGTCATCAAGGTTCATGC+AGG | + | chr6_2:69779410-69779429 | Msa0926230:CDS | 45.0% | |
| TGTCATCAAGGTTCATGCAG+GGG | + | chr6_2:69779412-69779431 | Msa0926230:CDS | 45.0% | |
| TGAGGACTCTGCACCAATAA+GGG | - | chr6_2:69779950-69779969 | None:intergenic | 45.0% | |
| TTGAGGACTCTGCACCAATA+AGG | - | chr6_2:69779951-69779970 | None:intergenic | 45.0% | |
| TATTGGTGCAGAGTCCTCAA+TGG | + | chr6_2:69779951-69779970 | Msa0926230:intron | 45.0% | |
| AGTCCTCAATGGTATGACTC+TGG | + | chr6_2:69779962-69779981 | Msa0926230:intron | 45.0% | |
| GTCCTCAATGGTATGACTCT+GGG | + | chr6_2:69779963-69779982 | Msa0926230:intron | 45.0% | |
| ATCCCAGAGTCATACCATTG+AGG | - | chr6_2:69779968-69779987 | None:intergenic | 45.0% | |
| ATCTGCACCATCTCCTTCTA+TGG | - | chr6_2:69780248-69780267 | None:intergenic | 45.0% | |
| GGGAATCCATTGGGAACATA+TGG | + | chr6_2:69780316-69780335 | Msa0926230:CDS | 45.0% | |
| GCTGAACCATATGTTCCCAA+TGG | - | chr6_2:69780325-69780344 | None:intergenic | 45.0% | |
| !! | GCTTGTTTTCCAATTGCTCC+GGG | - | chr6_2:69780768-69780787 | None:intergenic | 45.0% |
| GCAGACACAGCATCATTCTT+AGG | + | chr6_2:69780807-69780826 | Msa0926230:intron | 45.0% | |
| GAGTCCTTTCATCTTGCAAG+GGG | - | chr6_2:69781076-69781095 | None:intergenic | 45.0% | |
| CGAGTCCTTTCATCTTGCAA+GGG | - | chr6_2:69781077-69781096 | None:intergenic | 45.0% | |
| ! | ACGGTGTCTCAGTTTAAGGT+AGG | + | chr6_2:69781464-69781483 | Msa0926230:intron | 45.0% |
| AAAATGTTAACCGATGCCCC+CGG | + | chr6_2:69781714-69781733 | Msa0926230:intron | 45.0% | |
| AGACTCCAAGGTCTCAAGTT+GGG | + | chr6_2:69782037-69782056 | Msa0926230:intron | 45.0% | |
| CACTATACCTTGGAAGAGCT+TGG | + | chr6_2:69782291-69782310 | Msa0926230:CDS | 45.0% | |
| CTATACCTTGGAAGAGCTTG+GGG | + | chr6_2:69782293-69782312 | Msa0926230:CDS | 45.0% | |
| !!! | TAGTTTTTTTTTTAAAAAAA+AGG | + | chr6_2:69781953-69781972 | Msa0926230:intron | 5.0% |
| GTCAGTCTCTGACTACATCG+AGG | - | chr6_2:69780069-69780088 | None:intergenic | 50.0% | |
| ! | AATGGATTCCCTCTTGGACC+AGG | - | chr6_2:69780307-69780326 | None:intergenic | 50.0% |
| TGGTCCAAGAGGGAATCCAT+TGG | + | chr6_2:69780306-69780325 | Msa0926230:CDS | 50.0% | |
| GGTCCAAGAGGGAATCCATT+GGG | + | chr6_2:69780307-69780326 | Msa0926230:CDS | 50.0% | |
| ! | GTTCCCAATGGATTCCCTCT+TGG | - | chr6_2:69780313-69780332 | None:intergenic | 50.0% |
| ! | ACTTTTCCTCTTCCTGCACC+CGG | + | chr6_2:69780747-69780766 | Msa0926230:intron | 50.0% |
| TCTTGCAAGGGGTCCAGATT+AGG | - | chr6_2:69781065-69781084 | None:intergenic | 50.0% | |
| TGGACCCCTTGCAAGATGAA+AGG | + | chr6_2:69781069-69781088 | Msa0926230:intron | 50.0% | |
| GCGAGTCCTTTCATCTTGCA+AGG | - | chr6_2:69781078-69781097 | None:intergenic | 50.0% | |
| ! | GGTGACGGTGTCTCAGTTTA+AGG | + | chr6_2:69781460-69781479 | Msa0926230:intron | 50.0% |
| AAATGTTAACCGATGCCCCC+GGG | + | chr6_2:69781715-69781734 | Msa0926230:intron | 50.0% | |
| AGCATCTTTAACCAGTGCCC+CGG | - | chr6_2:69781736-69781755 | None:intergenic | 50.0% | |
| TTAAGGAGGAGCAGACTCCA+AGG | + | chr6_2:69782025-69782044 | Msa0926230:intron | 50.0% | |
| CAGACTCCAAGGTCTCAAGT+TGG | + | chr6_2:69782036-69782055 | Msa0926230:intron | 50.0% | |
| !! | ACAGGAGCACTAACAGCACA+AGG | + | chr6_2:69782203-69782222 | Msa0926230:CDS | 50.0% |
| GAGCACTAACAGCACAAGGA+AGG | + | chr6_2:69782207-69782226 | Msa0926230:CDS | 50.0% | |
| CTGCAACACCTGGTCCAAGA+GGG | + | chr6_2:69780296-69780315 | Msa0926230:CDS | 55.0% | |
| TTTCCAATTGCTCCGGGTGC+AGG | - | chr6_2:69780762-69780781 | None:intergenic | 55.0% | |
| AATGTTAACCGATGCCCCCG+GGG | + | chr6_2:69781716-69781735 | Msa0926230:intron | 55.0% | |
| ATCTTTAACCAGTGCCCCGG+GGG | - | chr6_2:69781733-69781752 | None:intergenic | 55.0% | |
| CATCTTTAACCAGTGCCCCG+GGG | - | chr6_2:69781734-69781753 | None:intergenic | 55.0% | |
| GCATCTTTAACCAGTGCCCC+GGG | - | chr6_2:69781735-69781754 | None:intergenic | 55.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | + | chr6_2:69781843-69781862 | Msa0926230:intron | 55.0% | |
| GTCATGTTAACCAGTGCCCG+GGG | - | chr6_2:69781863-69781882 | None:intergenic | 55.0% | |
| GGTCATGTTAACCAGTGCCC+GGG | - | chr6_2:69781864-69781883 | None:intergenic | 55.0% | |
| GGGTCATGTTAACCAGTGCC+CGG | - | chr6_2:69781865-69781884 | None:intergenic | 55.0% | |
| GCTCTCCCAACTTGAGACCT+TGG | - | chr6_2:69782045-69782064 | None:intergenic | 55.0% | |
| AACTGTAAGGTCACGGGGTC+AGG | + | chr6_2:69782266-69782285 | Msa0926230:CDS | 55.0% | |
| !! | GGGTCAGGAGCACTATACCT+TGG | + | chr6_2:69782281-69782300 | Msa0926230:CDS | 55.0% |
| AAGGACCCCAAGCTCTTCCA+AGG | - | chr6_2:69782301-69782320 | None:intergenic | 55.0% | |
| GGTGACACTGCTGCAACACC+TGG | + | chr6_2:69780286-69780305 | Msa0926230:CDS | 60.0% | |
| GCTGCAACACCTGGTCCAAG+AGG | + | chr6_2:69780295-69780314 | Msa0926230:CDS | 60.0% | |
| ATTGCTCCGGGTGCAGGAAG+AGG | - | chr6_2:69780756-69780775 | None:intergenic | 60.0% | |
| CTTCCTGCACCCGGAGCAAT+TGG | + | chr6_2:69780756-69780775 | Msa0926230:intron | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | chr6_2:69781844-69781863 | Msa0926230:intron | 60.0% | |
| !! | AGTGCCCGGGGCACTGGTTA+AGG | - | chr6_2:69781851-69781870 | None:intergenic | 65.0% |
| TTAACCAGTGCCCCGGGCAC+TGG | + | chr6_2:69781850-69781869 | Msa0926230:intron | 65.0% | |
| TTAACCAGTGCCCGGGGCAC+TGG | - | chr6_2:69781857-69781876 | None:intergenic | 65.0% | |
| ! | AACCAGTGCCCCGGGGGCAT+CGG | - | chr6_2:69781727-69781746 | None:intergenic | 70.0% |
| AACCGATGCCCCCGGGGCAC+TGG | + | chr6_2:69781722-69781741 | Msa0926230:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 69778953 | 69782630 | 69778953 | ID=Msa0926230;Name=Msa0926230 |
| chr6_2 | mRNA | 69778953 | 69782630 | 69778953 | ID=Msa0926230-mRNA-1;Parent=Msa0926230;Name=Msa0926230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=124|0.25|0.6|0.8|0|0.4|5|156|258 |
| chr6_2 | exon | 69778953 | 69779441 | 69778953 | ID=Msa0926230-mRNA-1:exon:11281;Parent=Msa0926230-mRNA-1 |
| chr6_2 | exon | 69779962 | 69779972 | 69779962 | ID=Msa0926230-mRNA-1:exon:11282;Parent=Msa0926230-mRNA-1 |
| chr6_2 | exon | 69780266 | 69780396 | 69780266 | ID=Msa0926230-mRNA-1:exon:11283;Parent=Msa0926230-mRNA-1 |
| chr6_2 | exon | 69782173 | 69782408 | 69782173 | ID=Msa0926230-mRNA-1:exon:11284;Parent=Msa0926230-mRNA-1 |
| chr6_2 | exon | 69782441 | 69782630 | 69782441 | ID=Msa0926230-mRNA-1:exon:11285;Parent=Msa0926230-mRNA-1 |
| chr6_2 | five_prime_UTR | 69778953 | 69779076 | 69778953 | ID=Msa0926230-mRNA-1:five_prime_utr;Parent=Msa0926230-mRNA-1 |
| chr6_2 | CDS | 69779077 | 69779441 | 69779077 | ID=Msa0926230-mRNA-1:cds;Parent=Msa0926230-mRNA-1 |
| chr6_2 | CDS | 69779962 | 69779972 | 69779962 | ID=Msa0926230-mRNA-1:cds;Parent=Msa0926230-mRNA-1 |
| chr6_2 | CDS | 69780266 | 69780396 | 69780266 | ID=Msa0926230-mRNA-1:cds;Parent=Msa0926230-mRNA-1 |
| chr6_2 | CDS | 69782173 | 69782408 | 69782173 | ID=Msa0926230-mRNA-1:cds;Parent=Msa0926230-mRNA-1 |
| chr6_2 | CDS | 69782441 | 69782474 | 69782441 | ID=Msa0926230-mRNA-1:cds;Parent=Msa0926230-mRNA-1 |
| chr6_2 | three_prime_UTR | 69782475 | 69782630 | 69782475 | ID=Msa0926230-mRNA-1:three_prime_utr;Parent=Msa0926230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
