AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0965810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965810 MtrunA17_Chr6g0487101 98.168 382 6 1 1 381 1 382 0.0 777
Msa0965810 MtrunA17_Chr8g0389771 79.947 379 73 2 4 380 1 378 0.0 620
Msa0965810 MtrunA17_Chr5g0399221 48.266 346 153 4 35 379 39 359 1.29e-109 325
Msa0965810 MtrunA17_Chr7g0258341 47.973 296 140 2 93 380 99 388 1.46e-98 298
Msa0965810 MtrunA17_Chr1g0194311 44.643 336 180 3 44 379 39 368 5.70e-97 293
Msa0965810 MtrunA17_Chr5g0446301 43.658 339 182 3 49 379 20 357 2.34e-96 291
Msa0965810 MtrunA17_Chr7g0265201 45.098 306 148 5 79 379 95 385 3.94e-91 279
Msa0965810 MtrunA17_Chr7g0217941 47.241 290 139 5 92 374 14 296 5.31e-88 268
Msa0965810 MtrunA17_Chr4g0070051 45.424 295 141 6 92 379 62 343 1.92e-85 263
Msa0965810 MtrunA17_Chr6g0453551 44.079 304 155 5 78 374 1 296 8.41e-84 258
Msa0965810 MtrunA17_Chr2g0294321 40.777 309 169 3 75 379 48 346 4.90e-76 239
Msa0965810 MtrunA17_Chr4g0037751 40.690 290 163 3 92 379 79 361 1.92e-72 230
Msa0965810 MtrunA17_Chr6g0466961 41.853 313 168 4 70 381 27 326 1.60e-71 226
Msa0965810 MtrunA17_Chr5g0420831 40.206 291 163 4 92 379 79 361 9.26e-71 226
Msa0965810 MtrunA17_Chr2g0295851 38.710 310 165 6 75 379 47 336 8.29e-70 223
Msa0965810 MtrunA17_Chr6g0466951 40.127 314 174 5 69 381 55 355 1.03e-68 220
Msa0965810 MtrunA17_Chr5g0440871 39.519 291 154 3 92 379 47 318 6.15e-62 202
Msa0965810 MtrunA17_Chr1g0161731 37.134 307 178 2 78 379 43 339 7.26e-62 202
Msa0965810 MtrunA17_Chr8g0351871 37.966 295 161 4 93 379 42 322 7.55e-62 202
Msa0965810 MtrunA17_Chr4g0069841 39.016 305 156 7 92 379 214 505 5.76e-60 202
Msa0965810 MtrunA17_Chr7g0269541 36.905 336 183 8 60 380 225 546 1.54e-59 202
Msa0965810 MtrunA17_Chr8g0384121 36.013 311 167 6 92 380 254 554 2.45e-59 201
Msa0965810 MtrunA17_Chr1g0192331 39.088 307 157 7 92 379 222 517 5.46e-59 199
Msa0965810 MtrunA17_Chr7g0272141 32.973 370 221 10 16 379 183 531 1.34e-57 196
Msa0965810 MtrunA17_Chr8g0345281 34.366 355 196 9 43 379 243 578 1.72e-57 197
Msa0965810 MtrunA17_Chr3g0129921 36.452 310 166 6 92 379 253 553 2.60e-56 193
Msa0965810 MtrunA17_Chr7g0269511 38.033 305 161 7 92 379 260 553 4.94e-56 192
Msa0965810 MtrunA17_Chr4g0018371 35.632 348 189 10 49 379 199 528 7.25e-56 191
Msa0965810 MtrunA17_Chr4g0069861 38.689 305 157 7 92 379 215 506 1.53e-55 190
Msa0965810 MtrunA17_Chr4g0011771 39.145 304 154 7 92 379 214 502 2.06e-54 187
Msa0965810 MtrunA17_Chr7g0269521 37.377 305 163 7 92 379 258 551 9.33e-54 186
Msa0965810 MtrunA17_Chr3g0079351 35.890 326 180 10 71 379 203 516 1.13e-53 185
Msa0965810 MtrunA17_Chr3g0090091 34.181 354 198 11 43 379 182 517 1.55e-53 185
Msa0965810 MtrunA17_Chr3g0079361 35.583 326 181 10 71 379 203 516 1.99e-53 185
Msa0965810 MtrunA17_Chr3g0079341 35.583 326 181 10 71 379 203 516 3.80e-53 184
Msa0965810 MtrunA17_Chr4g0069881 36.601 306 163 9 92 379 232 524 5.12e-53 184
Msa0965810 MtrunA17_Chr8g0354911 33.171 410 219 12 1 379 216 601 1.18e-52 184
Msa0965810 MtrunA17_Chr4g0011751 37.255 306 163 7 92 379 184 478 2.50e-52 181
Msa0965810 MtrunA17_Chr3g0080381 38.790 281 147 6 113 379 348 617 3.25e-52 183
Msa0965810 MtrunA17_Chr8g0354901 36.913 298 167 6 92 379 284 570 5.15e-52 182
Msa0965810 MtrunA17_Chr4g0011791 39.735 302 152 9 92 379 213 498 7.99e-52 180
Msa0965810 MtrunA17_Chr1g0175661 36.393 305 166 6 92 379 254 547 8.01e-52 181
Msa0965810 MtrunA17_Chr8g0391291 37.829 304 162 8 92 379 236 528 8.83e-52 181
Msa0965810 MtrunA17_Chr7g0269531 36.601 306 165 7 92 379 260 554 1.10e-51 181
Msa0965810 MtrunA17_Chr1g0195301 35.738 305 168 7 92 379 251 544 2.42e-51 180
Msa0965810 MtrunA17_Chr1g0195321 35.738 305 168 7 92 379 251 544 2.42e-51 180
Msa0965810 MtrunA17_Chr1g0195331 35.738 305 168 7 92 379 251 544 9.16e-51 178
Msa0965810 MtrunA17_Chr1g0192321 35.526 304 169 7 92 379 280 572 1.04e-50 179
Msa0965810 MtrunA17_Chr3g0126771 34.868 304 171 7 92 379 294 586 1.21e-50 179
Msa0965810 MtrunA17_Chr2g0314691 40.609 197 115 2 185 379 5 201 1.44e-50 168
Msa0965810 MtrunA17_Chr2g0302021 33.639 327 188 8 71 379 199 514 4.94e-50 176
Msa0965810 MtrunA17_Chr8g0391311 36.842 304 165 8 92 379 238 530 5.81e-50 176
Msa0965810 MtrunA17_Chr7g0265161 39.631 217 114 3 163 379 13 212 9.24e-50 167
Msa0965810 MtrunA17_Chr1g0147051 34.405 311 177 7 85 379 297 596 9.36e-50 176
Msa0965810 MtrunA17_Chr3g0080391 34.564 298 174 5 92 379 277 563 6.70e-49 173
Msa0965810 MtrunA17_Chr7g0233801 35.197 304 170 7 92 379 250 542 7.20e-49 173
Msa0965810 MtrunA17_Chr1g0195351 35.410 305 167 8 92 379 251 542 7.24e-49 173
Msa0965810 MtrunA17_Chr4g0025841 38.976 254 132 5 82 332 36 269 2.72e-48 164
Msa0965810 MtrunA17_Chr7g0233831 35.738 305 168 7 92 379 251 544 3.39e-48 171
Msa0965810 MtrunA17_Chr4g0067601 33.841 328 178 7 44 355 225 529 1.01e-47 171
Msa0965810 MtrunA17_Chr4g0067611 36.000 275 154 4 92 355 266 529 1.76e-47 170
Msa0965810 MtrunA17_Chr7g0272151 30.321 343 208 8 54 379 244 572 9.47e-47 168
Msa0965810 MtrunA17_Chr7g0233771 36.066 305 167 7 92 379 250 543 3.40e-46 166
Msa0965810 MtrunA17_Chr2g0295551 36.727 275 152 4 92 355 258 521 8.27e-46 165
Msa0965810 MtrunA17_Chr1g0195311 36.122 263 143 6 131 379 52 303 1.04e-45 159
Msa0965810 MtrunA17_Chr2g0295531 34.680 297 168 7 92 374 240 524 2.08e-45 164
Msa0965810 MtrunA17_Chr7g0270651 37.410 278 147 6 92 355 267 531 2.25e-45 164
Msa0965810 MtrunA17_Chr7g0234711 38.839 224 116 6 172 379 40 258 4.39e-45 156
Msa0965810 MtrunA17_Chr8g0345211 36.066 305 163 9 92 379 282 571 8.45e-45 162
Msa0965810 MtrunA17_Chr2g0301931 33.452 281 164 7 111 380 14 282 9.33e-45 156
Msa0965810 MtrunA17_Chr4g0069891 33.333 354 204 9 40 379 247 582 1.19e-44 162
Msa0965810 MtrunA17_Chr6g0459781 49.432 176 81 4 83 256 13 182 2.69e-44 152
Msa0965810 MtrunA17_Chr2g0334111 33.225 307 172 5 85 379 27 312 9.13e-44 154
Msa0965810 MtrunA17_Chr1g0194091 34.448 299 166 7 92 373 261 546 1.14e-43 159
Msa0965810 MtrunA17_Chr7g0268241 31.962 316 182 6 77 379 44 339 1.26e-43 154
Msa0965810 MtrunA17_Chr1g0194081 33.887 301 175 6 92 379 263 552 1.76e-43 159
Msa0965810 MtrunA17_Chr7g0270631 36.879 282 151 6 88 355 251 519 2.94e-43 160
Msa0965810 MtrunA17_Chr7g0270631 34.138 290 156 6 88 355 799 1075 6.12e-39 148
Msa0965810 MtrunA17_Chr7g0270661 37.410 278 147 6 92 355 267 531 3.01e-43 158
Msa0965810 MtrunA17_Chr7g0270671 37.410 278 147 6 92 355 267 531 3.01e-43 158
Msa0965810 MtrunA17_Chr5g0437831 33.553 304 174 9 92 379 81 372 1.69e-42 152
Msa0965810 MtrunA17_Chr2g0302001 36.842 247 135 6 150 380 186 427 1.35e-41 151
Msa0965810 MtrunA17_Chr8g0380581 32.026 306 177 9 92 379 73 365 2.54e-40 146
Msa0965810 MtrunA17_Chr1g0192301 31.373 306 181 8 92 379 270 564 5.52e-40 149
Msa0965810 MtrunA17_Chr1g0192311 31.699 306 180 8 92 379 265 559 7.59e-40 149
Msa0965810 MtrunA17_Chr1g0192281 31.699 306 180 8 92 379 265 559 7.59e-40 149
Msa0965810 MtrunA17_Chr7g0270691 32.673 303 177 9 92 379 248 538 1.62e-39 147
Msa0965810 MtrunA17_Chr4g0000121 31.046 306 182 8 92 379 252 546 2.29e-39 147
Msa0965810 MtrunA17_Chr5g0440901 49.231 130 63 1 200 326 13 142 2.50e-39 137
Msa0965810 MtrunA17_Chr6g0460141 48.889 135 66 1 120 254 13 144 1.16e-37 133
Msa0965810 MtrunA17_Chr2g0295541 31.596 307 155 6 92 355 258 552 1.33e-36 140
Msa0965810 MtrunA17_Chr6g0459791 51.304 115 55 1 266 379 2 116 6.17e-35 124
Msa0965810 MtrunA17_Chr7g0271381 28.097 331 204 7 71 379 227 545 2.65e-31 124
Msa0965810 MtrunA17_Chr5g0440891 45.122 164 70 3 92 254 56 200 1.75e-30 115
Msa0965810 MtrunA17_Chr5g0440881 34.848 132 83 1 252 380 9 140 7.58e-23 93.6
Msa0965810 MtrunA17_Chr4g0073911 34.078 179 104 4 100 273 24 193 1.64e-22 95.5
Msa0965810 MtrunA17_Chr8g0391261 34.328 134 74 4 258 379 24 155 3.43e-13 67.0
Msa0965810 MtrunA17_Chr5g0437821 30.827 133 77 3 208 326 4 135 1.02e-12 65.1
Msa0965810 MtrunA17_Chr5g0444991 41.538 65 38 0 259 323 5 69 1.98e-11 59.7
Msa0965810 MtrunA17_Chr2g0314701 40.860 93 48 1 92 184 79 164 3.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965810 AT5G19730.1 75.414 362 86 3 21 381 24 383 0.0 582
Msa0965810 AT5G47500.1 42.216 379 191 5 2 379 6 357 2.12e-102 307
Msa0965810 AT1G05310.1 46.906 307 148 3 83 381 91 390 2.65e-98 298
Msa0965810 AT2G36710.1 45.732 328 155 5 57 379 76 385 3.43e-98 298
Msa0965810 AT2G36700.1 44.483 290 153 2 92 379 50 333 1.67e-90 276
Msa0965810 AT3G29090.1 47.586 290 138 5 92 374 15 297 5.87e-89 271
Msa0965810 AT5G55590.1 46.801 297 154 3 85 379 84 378 6.05e-87 268
Msa0965810 AT2G21610.2 45.485 299 144 7 83 379 56 337 1.21e-86 266
Msa0965810 AT2G21610.1 45.151 299 145 6 83 379 51 332 1.22e-86 266
Msa0965810 AT1G69940.1 43.243 296 160 2 85 379 67 355 2.46e-81 253
Msa0965810 AT5G07410.1 43.243 296 160 2 85 379 67 355 3.83e-81 253
Msa0965810 AT5G07430.1 44.444 288 151 3 93 379 76 355 7.23e-81 252
Msa0965810 AT5G61680.1 43.599 289 155 2 92 379 77 358 1.88e-77 243
Msa0965810 AT3G17060.1 39.041 292 165 2 92 379 54 336 3.23e-76 239
Msa0965810 AT5G07420.1 42.561 289 157 3 92 379 75 355 1.58e-74 236
Msa0965810 AT5G55590.2 46.800 250 129 3 85 332 84 331 1.09e-73 233
Msa0965810 AT5G26810.1 38.323 334 178 8 60 379 14 333 2.86e-67 216
Msa0965810 AT5G18990.1 37.919 298 166 3 92 380 37 324 9.21e-64 207
Msa0965810 AT2G19150.1 39.041 292 162 2 94 379 51 332 1.56e-61 201
Msa0965810 AT3G24130.1 35.556 315 183 4 76 380 25 329 1.26e-60 199
Msa0965810 AT5G64640.1 36.482 307 163 5 94 378 301 597 3.05e-59 202
Msa0965810 AT2G47280.1 38.245 319 173 7 70 379 24 327 3.56e-59 195
Msa0965810 AT5G09760.1 37.582 306 160 5 94 378 251 546 4.66e-59 201
Msa0965810 AT5G09760.2 37.582 306 160 5 94 378 277 572 6.03e-59 201
Msa0965810 AT3G05620.1 38.567 293 164 5 92 379 249 530 4.24e-58 198
Msa0965810 AT1G11580.1 33.498 406 228 13 2 379 155 546 3.09e-57 196
Msa0965810 AT1G11580.2 33.498 406 228 13 2 379 176 567 4.60e-57 196
Msa0965810 AT2G45220.1 40.397 302 151 8 92 379 215 501 3.77e-56 192
Msa0965810 AT5G49180.1 36.755 302 167 6 92 379 268 559 6.78e-56 192
Msa0965810 AT4G02330.1 35.638 376 198 11 24 379 209 560 2.54e-55 191
Msa0965810 AT3G06830.1 36.755 302 167 6 92 379 266 557 3.56e-55 191
Msa0965810 AT3G05610.1 33.846 325 183 7 76 379 241 554 5.00e-55 192
Msa0965810 AT3G59010.1 35.673 342 189 9 47 379 198 517 1.22e-54 188
Msa0965810 AT4G02300.1 35.855 304 169 6 92 380 230 522 1.82e-54 188
Msa0965810 AT3G60730.1 38.644 295 155 6 100 379 225 508 6.95e-54 186
Msa0965810 AT5G27870.1 35.099 302 171 6 92 379 261 551 1.07e-53 189
Msa0965810 AT2G26440.1 36.755 302 166 5 92 379 246 536 2.47e-53 185
Msa0965810 AT4G33230.1 36.964 303 164 7 92 379 305 595 3.41e-53 186
Msa0965810 AT5G04960.1 37.261 314 174 6 77 379 252 553 5.15e-53 185
Msa0965810 AT2G43050.1 38.267 277 150 5 111 379 242 505 5.58e-53 184
Msa0965810 AT4G00190.1 37.500 304 161 9 92 379 173 463 8.04e-53 182
Msa0965810 AT1G53830.1 34.184 392 204 12 14 379 213 576 1.04e-52 184
Msa0965810 AT3G43270.1 37.954 303 162 6 92 379 223 514 2.94e-52 182
Msa0965810 AT2G26450.1 34.653 303 171 7 92 379 310 600 3.81e-52 183
Msa0965810 AT5G51490.1 38.762 307 158 8 92 379 230 525 4.02e-52 182
Msa0965810 AT4G33220.2 35.644 303 169 6 92 379 100 391 6.26e-52 178
Msa0965810 AT1G23200.1 39.172 314 169 8 75 379 243 543 8.37e-52 181
Msa0965810 AT1G53840.1 35.880 301 167 7 92 379 289 576 9.15e-52 182
Msa0965810 AT3G10720.2 37.582 306 159 8 93 379 312 604 1.20e-51 182
Msa0965810 AT4G15980.1 36.093 302 169 6 92 379 400 691 1.75e-51 183
Msa0965810 AT4G15980.2 36.093 302 169 6 92 379 410 701 2.08e-51 182
Msa0965810 AT4G03930.1 36.213 301 168 8 92 379 224 513 2.38e-51 179
Msa0965810 AT4G02320.1 34.539 304 173 5 92 380 216 508 4.80e-51 179
Msa0965810 AT4G33220.1 35.644 303 169 6 92 379 221 512 5.79e-51 178
Msa0965810 AT2G19150.2 40.408 245 130 2 94 332 51 285 1.27e-50 171
Msa0965810 AT3G10710.1 36.577 298 168 5 92 379 264 550 1.34e-50 178
Msa0965810 AT5G04970.1 36.842 304 164 7 93 379 317 609 3.29e-50 178
Msa0965810 AT1G02810.1 37.634 279 148 6 92 355 273 540 3.68e-50 177
Msa0965810 AT3G27980.1 34.451 328 176 9 80 379 170 486 3.87e-49 173
Msa0965810 AT3G10720.1 37.984 258 135 6 136 379 2 248 5.64e-48 164
Msa0965810 AT5G53370.1 35.197 304 170 7 92 379 282 574 3.87e-47 169
Msa0965810 AT5G53370.2 35.197 304 170 7 92 379 318 610 4.11e-47 170
Msa0965810 AT3G14310.1 36.393 305 164 7 92 379 290 581 8.17e-47 168
Msa0965810 AT5G51500.1 37.658 316 166 10 83 379 226 529 1.41e-46 167
Msa0965810 AT1G11590.1 34.551 301 173 7 92 379 224 513 7.90e-46 165
Msa0965810 AT1G11370.1 37.549 253 134 6 83 323 46 286 9.81e-46 159
Msa0965810 AT5G20860.2 34.314 306 167 10 92 379 238 527 1.02e-45 164
Msa0965810 AT2G47550.1 35.231 281 157 6 113 379 278 547 1.51e-45 164
Msa0965810 AT3G49220.1 32.659 346 196 10 52 379 259 585 3.89e-45 164
Msa0965810 AT3G49220.3 32.659 346 196 10 52 379 304 630 4.65e-45 164
Msa0965810 AT3G14300.1 35.099 302 170 10 92 379 669 958 3.38e-44 164
Msa0965810 AT2G47030.1 34.437 302 175 7 92 379 285 577 3.90e-44 161
Msa0965810 AT3G47400.1 35.366 328 180 8 43 355 246 556 1.52e-43 159
Msa0965810 AT2G47040.1 31.534 352 205 10 49 379 248 584 1.61e-42 157
Msa0965810 AT3G62170.1 33.681 288 167 6 84 357 277 554 2.49e-40 150
Msa0965810 AT5G20860.1 33.058 242 134 7 130 355 244 473 1.68e-36 139
Msa0965810 AT1G44980.1 31.548 168 102 3 92 258 86 241 7.86e-21 90.9

Find 78 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCTGTTGATTTCATATT+TGG 0.121916 6_3:-93729413 Msa0965810:CDS
TTCCTAAAGGATGGTATAAT+TGG 0.166771 6_3:-93728086 Msa0965810:CDS
TGTCTTTGCTTATACATATA+TGG 0.241934 6_3:-93728121 Msa0965810:CDS
GACAACTCTAACAAGATTAA+TGG 0.267014 6_3:+93730934 None:intergenic
GTTGATAAGAATCCTTCTTT+TGG 0.287967 6_3:-93730998 Msa0965810:CDS
GCAAAGACAACTCGTGAAAA+AGG 0.294337 6_3:+93728135 None:intergenic
ATCTGCACCATCTCCTTCTA+TGG 0.317044 6_3:+93730075 None:intergenic
GTCTGCTCTTGTTGTATTGT+TGG 0.317261 6_3:+93731126 None:intergenic
ACTATCAGGACTGTGTTCTA+TGG 0.326516 6_3:-93726468 Msa0965810:intron
CAGAACAACAATTCATGAAA+TGG 0.331842 6_3:-93731099 Msa0965810:CDS
AACTGTAAGGTCACGGGGTC+AGG 0.335283 6_3:-93728186 Msa0965810:CDS
CTTCCTGCACCTGGAGCAAT+TGG 0.339417 6_3:-93729563 Msa0965810:CDS
CTTTCACTTACCTTTATTGA+TGG 0.352915 6_3:-93726357 Msa0965810:CDS
AAATCCTTCATAACCATAGA+AGG 0.356873 6_3:-93730088 Msa0965810:CDS
CCCCAATTATACCATCCTTT+AGG 0.373131 6_3:+93728084 None:intergenic
TCCTAAAGGATGGTATAATT+GGG 0.373364 6_3:-93728085 Msa0965810:CDS
TATAAAGATTGTTATATTGA+AGG 0.394199 6_3:-93729434 Msa0965810:CDS
CAATGCGCTCTCTCTATTTG+AGG 0.395860 6_3:-93729390 Msa0965810:intron
TTTCTCATTTGTAAACTGTA+AGG 0.409609 6_3:-93728199 Msa0965810:CDS
GATACACTTTATGATCATAT+TGG 0.411749 6_3:-93729467 Msa0965810:CDS
CCATTCAGTCCCATCAATAA+AGG 0.413685 6_3:+93726347 None:intergenic
ATCTCCTTCTATGGTTATGA+AGG 0.422625 6_3:+93730084 None:intergenic
GATACATACATTTCACGGTT+AGG 0.424041 6_3:+93728057 None:intergenic
AGATACAACAATTGTTCAAT+GGG 0.424805 6_3:-93730056 Msa0965810:CDS
ACTATATCTTGGAAGAGCTT+GGG 0.427101 6_3:-93728160 Msa0965810:CDS
TGATGGAGAATGGTATGTTT+TGG 0.430105 6_3:+93731304 None:intergenic
TTTCACTTACCTTTATTGAT+GGG 0.430217 6_3:-93726356 Msa0965810:CDS
CACTATATCTTGGAAGAGCT+TGG 0.443202 6_3:-93728161 Msa0965810:CDS
CCTTTATTGATGGGACTGAA+TGG 0.449128 6_3:-93726347 Msa0965810:CDS
ACCATAGTGCTCGTAATCAT+AGG 0.455658 6_3:+93731353 None:intergenic
GGGAATCCATTGGGAACATA+TGG 0.456454 6_3:-93730004 Msa0965810:CDS
GTTCCCAATGGATTCCCTCT+TGG 0.460412 6_3:+93730010 None:intergenic
CAGATACAACAATTGTTCAA+TGG 0.461738 6_3:-93730057 Msa0965810:CDS
AGAACAACAATTCATGAAAT+GGG 0.467696 6_3:-93731098 Msa0965810:CDS
ATGAAGATACATACATTTCA+CGG 0.472479 6_3:+93728052 None:intergenic
TCTTAAACATACTGTTTACA+AGG 0.475947 6_3:-93731059 Msa0965810:CDS
ATGTTCTTAGCAATGAAATA+AGG 0.476305 6_3:+93729956 None:intergenic
ACCTATGATTACGAGCACTA+TGG 0.479447 6_3:-93731354 Msa0965810:five_prime_UTR
TTTCCAATTGCTCCAGGTGC+AGG 0.479666 6_3:+93729560 None:intergenic
ACAATACATTGTCATACAAA+AGG 0.482414 6_3:-93731187 Msa0965810:CDS
GACAATATCATCATTCCTAA+AGG 0.492438 6_3:-93728099 Msa0965810:CDS
CAATACAAATGCACAGGACC+TGG 0.495099 6_3:-93726444 Msa0965810:CDS
TTATGAAAATGAAGAAATGA+TGG 0.496118 6_3:+93731287 None:intergenic
CATGCAATAGCAAGAAATAC+AGG 0.503277 6_3:-93728267 Msa0965810:CDS
AATGGATTCCCTCTTGGACC+AGG 0.506866 6_3:+93730016 None:intergenic
CTCCCTGCAAAACTTGCTCC+AGG 0.513542 6_3:+93726426 None:intergenic
GGGTCAGGAGCACTATATCT+TGG 0.513788 6_3:-93728171 Msa0965810:CDS
CCGATACGTTCTACTCGAAA+CGG 0.517243 6_3:-93731157 Msa0965810:CDS
TCTTGTTAGAGTTGTCATCA+AGG 0.521394 6_3:-93730927 Msa0965810:CDS
AATGGAAGGAAGAGAATCAA+TGG 0.525259 6_3:+93730952 None:intergenic
GGTGACACTGCTGCAACACC+TGG 0.530589 6_3:-93730034 Msa0965810:CDS
ATTGCTCCAGGTGCAGGAAG+AGG 0.536208 6_3:+93729566 None:intergenic
TTTGTAAACTGTAAGGTCAC+GGG 0.536299 6_3:-93728192 Msa0965810:CDS
GTATCAAAATCTCCAAAAGA+AGG 0.540547 6_3:+93730986 None:intergenic
GGTCCAAGAGGGAATCCATT+GGG 0.541904 6_3:-93730013 Msa0965810:CDS
GTTGTCATCAAGGTTCATGC+AGG 0.544916 6_3:-93730917 Msa0965810:CDS
ATAAAGGTAAGTGAAAGAAA+AGG 0.550829 6_3:+93726363 None:intergenic
AATGAAGAAATGATGGAGAA+TGG 0.556499 6_3:+93731294 None:intergenic
CTATATCTTGGAAGAGCTTG+GGG 0.562584 6_3:-93728159 Msa0965810:CDS
ATTTGTAAACTGTAAGGTCA+CGG 0.575614 6_3:-93728193 Msa0965810:CDS
ATATCATCATTCCTAAAGGA+TGG 0.582481 6_3:-93728095 Msa0965810:CDS
TTGTCATCAAGGTTCATGCA+GGG 0.593919 6_3:-93730916 Msa0965810:CDS
TATGGACAATACAAATGCAC+AGG 0.596969 6_3:-93726450 Msa0965810:CDS
GCTGAACCATATGTTCCCAA+TGG 0.599059 6_3:+93729998 None:intergenic
GAGCACTAACAGCACAAGGA+AGG 0.601529 6_3:-93728245 Msa0965810:CDS
AGCAGTATGTTACAAGACAC+AGG 0.614754 6_3:-93728222 Msa0965810:CDS
CCTAAAGGATGGTATAATTG+GGG 0.616488 6_3:-93728084 Msa0965810:CDS
TTCATAACCATAGAAGGAGA+TGG 0.618649 6_3:-93730082 Msa0965810:CDS
CTGCAACACCTGGTCCAAGA+GGG 0.622017 6_3:-93730024 Msa0965810:CDS
TGGTCCAAGAGGGAATCCAT+TGG 0.624366 6_3:-93730014 Msa0965810:CDS
TGTCATCAAGGTTCATGCAG+GGG 0.633769 6_3:-93730915 Msa0965810:CDS
ACTCTAACAAGATTAATGGA+AGG 0.635519 6_3:+93730938 None:intergenic
GCTGCAACACCTGGTCCAAG+AGG 0.644109 6_3:-93730025 Msa0965810:CDS
AGCAATTGGAAAACAAGCAG+TGG 0.644362 6_3:-93729549 Msa0965810:CDS
CCGTTTCGAGTAGAACGTAT+CGG 0.645496 6_3:+93731157 None:intergenic
ACAGGAGCACTAACAGCACA+AGG 0.679858 6_3:-93728249 Msa0965810:CDS
TTGTAAACTGTAAGGTCACG+GGG 0.696317 6_3:-93728191 Msa0965810:CDS
GATACAACAATTGTTCAATG+GGG 0.710613 6_3:-93730055 Msa0965810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAACATAGTTTTTTTTAAT+CGG - chr6_3:93727822-93727841 Msa0965810:intron 10.0%
!!! CAATAAAAAAAATTTGAAAT+TGG + chr6_3:93728730-93728749 None:intergenic 10.0%
!! TATTCCTAATTATATTATAA+TGG - chr6_3:93728773-93728792 Msa0965810:intron 10.0%
!!! TATTTTTATGAAACAAATTT+AGG - chr6_3:93728857-93728876 Msa0965810:intron 10.0%
!! AACAAAAAAAAAATCTTTAT+TGG + chr6_3:93730155-93730174 None:intergenic 10.0%
!!! AATAAAGATTTTTTTTTTGT+TGG - chr6_3:93730154-93730173 Msa0965810:intron 10.0%
!! AAACAAATATTATCATAAAA+TGG + chr6_3:93730369-93730388 None:intergenic 10.0%
!!! GATAATATTTGTTTTTTTTT+TGG - chr6_3:93730375-93730394 Msa0965810:intron 10.0%
!! AAAATAAAATAAATATTGGA+GGG + chr6_3:93730497-93730516 None:intergenic 10.0%
!! ATCAAATTATTCAAAAATGT+TGG + chr6_3:93727104-93727123 None:intergenic 15.0%
!!! ATTTTATATTATTCAAGCTT+AGG + chr6_3:93727427-93727446 None:intergenic 15.0%
!! TTTATATACGAGAATAAATT+TGG + chr6_3:93727848-93727867 None:intergenic 15.0%
!! TATAAAGATTGTTATATTGA+AGG - chr6_3:93728275-93728294 Msa0965810:CDS 15.0%
!!! AATATGAATAGTTTTTTTAG+GGG + chr6_3:93728622-93728641 None:intergenic 15.0%
!!! GAATATGAATAGTTTTTTTA+GGG + chr6_3:93728623-93728642 None:intergenic 15.0%
!!! TGAATATGAATAGTTTTTTT+AGG + chr6_3:93728624-93728643 None:intergenic 15.0%
!! GTTTCCATTATAATATAATT+AGG + chr6_3:93728780-93728799 None:intergenic 15.0%
!! TGATAATTAACTTAAAGATT+TGG + chr6_3:93729032-93729051 None:intergenic 15.0%
!!! TTTCAATCGATATTTAAAAT+CGG - chr6_3:93729951-93729970 Msa0965810:CDS 15.0%
!!! ATGTTAACAATTAGTTTTTT+AGG - chr6_3:93730002-93730021 Msa0965810:CDS 15.0%
!!! TTTTTTTTTGTTGGTAAATA+TGG - chr6_3:93730163-93730182 Msa0965810:intron 15.0%
!!! TATTTTTTATTAAATGCTTG+TGG - chr6_3:93730411-93730430 Msa0965810:intron 15.0%
!! CAAAATAAAATAAATATTGG+AGG + chr6_3:93730498-93730517 None:intergenic 15.0%
!! ATAAGTAATAAACAACTTAT+AGG - chr6_3:93730520-93730539 Msa0965810:intron 15.0%
!! ATATATTTAAACCTACTAAT+GGG + chr6_3:93731179-93731198 None:intergenic 15.0%
!! AATATATTTAAACCTACTAA+TGG + chr6_3:93731180-93731199 None:intergenic 15.0%
!! TTATGAAAATGAAGAAATGA+TGG + chr6_3:93726425-93726444 None:intergenic 20.0%
!! AAATTGTGATCAAATATGTA+TGG - chr6_3:93726923-93726942 Msa0965810:intron 20.0%
!!! GTTTTAACATACAATTTTGT+TGG - chr6_3:93727188-93727207 Msa0965810:intron 20.0%
!! GCATTAAATGTATTAAATGA+TGG + chr6_3:93728358-93728377 None:intergenic 20.0%
!!! AAGAATCATTTAGGTTTTTT+AGG - chr6_3:93728404-93728423 Msa0965810:intron 20.0%
!! ATCCAAAAAAAACAAGTATT+GGG + chr6_3:93729005-93729024 None:intergenic 20.0%
!! AATCCAAAAAAAACAAGTAT+TGG + chr6_3:93729006-93729025 None:intergenic 20.0%
!!! ATTTTTCATGATTTAGTCTA+TGG - chr6_3:93729079-93729098 Msa0965810:intron 20.0%
!! CAACTAATCAAATTATTACT+AGG + chr6_3:93729126-93729145 None:intergenic 20.0%
!!! TTCAATCGATATTTAAAATC+GGG - chr6_3:93729952-93729971 Msa0965810:CDS 20.0%
!! GAGAAGTTAAACAAAAAAAA+AGG - chr6_3:93730308-93730327 Msa0965810:intron 20.0%
!! TGTATTTAGTATTTACTTGA+TGG + chr6_3:93730614-93730633 None:intergenic 20.0%
!!! ACTAAATACAGATAATGTTT+TGG - chr6_3:93730624-93730643 Msa0965810:intron 20.0%
!!! AGTATTATTGTTTCAAGTTT+AGG - chr6_3:93730918-93730937 Msa0965810:CDS 20.0%
!! TGTAAACTCAATATACAAAA+CGG - chr6_3:93731030-93731049 Msa0965810:CDS 20.0%
!! TTTTGTATGACAATGTATTG+TGG + chr6_3:93726523-93726542 None:intergenic 25.0%
! ACAATACATTGTCATACAAA+AGG - chr6_3:93726522-93726541 Msa0965810:intron 25.0%
! AGAACAACAATTCATGAAAT+GGG - chr6_3:93726611-93726630 Msa0965810:intron 25.0%
! TCTTAAACATACTGTTTACA+AGG - chr6_3:93726650-93726669 Msa0965810:intron 25.0%
!!! TGTCCAAAGTTTTTAATTTG+CGG - chr6_3:93726873-93726892 Msa0965810:intron 25.0%
! TGTAAATACAGTTTGACTAA+GGG + chr6_3:93727006-93727025 None:intergenic 25.0%
! ATGTAAATACAGTTTGACTA+AGG + chr6_3:93727007-93727026 None:intergenic 25.0%
!!! TTTTGTTTTTGTACCCTTAT+TGG - chr6_3:93727323-93727342 Msa0965810:intron 25.0%
!! ATGGTTATGAAGGATTTTAA+AGG + chr6_3:93727618-93727637 None:intergenic 25.0%
! AGATACAACAATTGTTCAAT+GGG - chr6_3:93727653-93727672 Msa0965810:intron 25.0%
! ATGTTCTTAGCAATGAAATA+AGG + chr6_3:93727756-93727775 None:intergenic 25.0%
! AAAACCTTCAAGTCAAAATA+AGG - chr6_3:93727898-93727917 Msa0965810:intron 25.0%
! AAACCTTCAAGTCAAAATAA+GGG - chr6_3:93727899-93727918 Msa0965810:intron 25.0%
! CTAATTATTGCTAGCAATAA+TGG - chr6_3:93727922-93727941 Msa0965810:intron 25.0%
!!! TTTTTAGGGTGCAAATTTTT+AGG - chr6_3:93728212-93728231 Msa0965810:CDS 25.0%
! GATACACTTTATGATCATAT+TGG - chr6_3:93728242-93728261 Msa0965810:CDS 25.0%
! TACATTTAATGCAGAATCAT+AGG - chr6_3:93728366-93728385 Msa0965810:intron 25.0%
!!! CAGAATCATAGGTTTTTTTT+TGG - chr6_3:93728377-93728396 Msa0965810:intron 25.0%
! TTTGGTACAAAGAATCATTT+AGG - chr6_3:93728395-93728414 Msa0965810:intron 25.0%
!!! AAAAAAAGTGCCCTTTAAAT+TGG + chr6_3:93728540-93728559 None:intergenic 25.0%
!! AGAATTTTTCTTGTCCTTAT+TGG - chr6_3:93728703-93728722 Msa0965810:intron 25.0%
!! AATTTGAAATTGGTCCAATA+AGG + chr6_3:93728720-93728739 None:intergenic 25.0%
!! TATGAAACAAATTTAGGATG+AGG - chr6_3:93728863-93728882 Msa0965810:intron 25.0%
!!! AAAAAAACAAGTATTGGGTT+CGG + chr6_3:93729000-93729019 None:intergenic 25.0%
!!! AACCCAATACTTGTTTTTTT+TGG - chr6_3:93729000-93729019 Msa0965810:intron 25.0%
!!! TCTTCAATGTCAATTTTAGT+GGG + chr6_3:93729248-93729267 None:intergenic 25.0%
!! ATCTTCAATGTCAATTTTAG+TGG + chr6_3:93729249-93729268 None:intergenic 25.0%
!! TAATCGAACCTGAAATTTTA+AGG - chr6_3:93729268-93729287 Msa0965810:intron 25.0%
!! ATGTTGTGACACTTTTAAAT+AGG - chr6_3:93729408-93729427 Msa0965810:CDS 25.0%
!! TGTTGTGACACTTTTAAATA+GGG - chr6_3:93729409-93729428 Msa0965810:CDS 25.0%
! TTTCTCATTTGTAAACTGTA+AGG - chr6_3:93729510-93729529 Msa0965810:CDS 25.0%
! TGTCTTTGCTTATACATATA+TGG - chr6_3:93729588-93729607 Msa0965810:intron 25.0%
! ATGAAGATACATACATTTCA+CGG + chr6_3:93729660-93729679 None:intergenic 25.0%
! ACAATTCACACTTAAAACTT+AGG - chr6_3:93729812-93729831 Msa0965810:intron 25.0%
! CAATTCACACTTAAAACTTA+GGG - chr6_3:93729813-93729832 Msa0965810:intron 25.0%
! GTGAAATGGTTATGATAATT+TGG - chr6_3:93729890-93729909 Msa0965810:intron 25.0%
!! GTGTATTTGAATTTTGAACT+AGG - chr6_3:93730210-93730229 Msa0965810:intron 25.0%
! TCTCTATCAACAATTAACTA+AGG + chr6_3:93730292-93730311 None:intergenic 25.0%
!!! AACATTTTTTTGGTTACGAT+GGG + chr6_3:93731151-93731170 None:intergenic 25.0%
! ATAAAGGTAAGTGAAAGAAA+AGG + chr6_3:93731349-93731368 None:intergenic 25.0%
! TTTCACTTACCTTTATTGAT+GGG - chr6_3:93731353-93731372 Msa0965810:five_prime_UTR 25.0%
! AATGAAGAAATGATGGAGAA+TGG + chr6_3:93726418-93726437 None:intergenic 30.0%
CAGAACAACAATTCATGAAA+TGG - chr6_3:93726610-93726629 Msa0965810:intron 30.0%
!! GTTGATAAGAATCCTTCTTT+TGG - chr6_3:93726711-93726730 Msa0965810:intron 30.0%
GTATCAAAATCTCCAAAAGA+AGG + chr6_3:93726726-93726745 None:intergenic 30.0%
ACTCTAACAAGATTAATGGA+AGG + chr6_3:93726774-93726793 None:intergenic 30.0%
GACAACTCTAACAAGATTAA+TGG + chr6_3:93726778-93726797 None:intergenic 30.0%
!! TTTTCCTTTTGTTTGTAGTG+TGG - chr6_3:93726847-93726866 Msa0965810:intron 30.0%
TGACCGCAAATTAAAAACTT+TGG + chr6_3:93726879-93726898 None:intergenic 30.0%
GTGATCAAATATGTATGGTA+AGG - chr6_3:93726928-93726947 Msa0965810:intron 30.0%
AAGGTAGAAGACATATTGTT+TGG - chr6_3:93726947-93726966 Msa0965810:intron 30.0%
GTCAAACTGTATTTACATCT+CGG - chr6_3:93727009-93727028 Msa0965810:intron 30.0%
! AAAATGTTGGCTACTCAATT+TGG + chr6_3:93727091-93727110 None:intergenic 30.0%
! TTTTTGTCAGAGATGAACTT+TGG - chr6_3:93727129-93727148 Msa0965810:intron 30.0%
TGTAAAGATAGAAACTCACA+AGG + chr6_3:93727257-93727276 None:intergenic 30.0%
AACTATTAGAAGAGAAACCT+TGG + chr6_3:93727555-93727574 None:intergenic 30.0%
!! TTGTGTGTGTTTTTATGTCT+AGG - chr6_3:93727574-93727593 Msa0965810:intron 30.0%
!! TGTGTGTGTTTTTATGTCTA+GGG - chr6_3:93727575-93727594 Msa0965810:intron 30.0%
!! GTTATGAAGGATTTTAAAGG+AGG + chr6_3:93727615-93727634 None:intergenic 30.0%
AAATCCTTCATAACCATAGA+AGG - chr6_3:93727621-93727640 Msa0965810:intron 30.0%
CAGATACAACAATTGTTCAA+TGG - chr6_3:93727652-93727671 Msa0965810:intron 30.0%
GATACAACAATTGTTCAATG+GGG - chr6_3:93727654-93727673 Msa0965810:intron 30.0%
AGCAGCATAAATTTAGAGAT+AGG - chr6_3:93727978-93727997 Msa0965810:intron 30.0%
TGCTAAAGACGTCAAATTTA+AGG - chr6_3:93728036-93728055 Msa0965810:intron 30.0%
GCTAAAGACGTCAAATTTAA+GGG - chr6_3:93728037-93728056 Msa0965810:intron 30.0%
!! CAGATACAGCATCATTTTTA+GGG - chr6_3:93728198-93728217 Msa0965810:CDS 30.0%
!! GGTTCTGTTGATTTCATATT+TGG - chr6_3:93728296-93728315 Msa0965810:intron 30.0%
!! TATTGCATTGTTGCTTTATG+TGG + chr6_3:93728430-93728449 None:intergenic 30.0%
TAACCCCAAATCCAATTTAA+AGG - chr6_3:93728526-93728545 Msa0965810:intron 30.0%
AACCCCAAATCCAATTTAAA+GGG - chr6_3:93728527-93728546 Msa0965810:intron 30.0%
AACTCAATGTACATGATGAA+GGG + chr6_3:93728573-93728592 None:intergenic 30.0%
TAACTCAATGTACATGATGA+AGG + chr6_3:93728574-93728593 None:intergenic 30.0%
TTCATCATGTACATTGAGTT+AGG - chr6_3:93728573-93728592 Msa0965810:intron 30.0%
CTAGGATAGTTCTTGAATAT+AGG + chr6_3:93729108-93729127 None:intergenic 30.0%
GTCTACTAAAGAAAGAAATG+AGG - chr6_3:93729145-93729164 Msa0965810:intron 30.0%
!! CCTGAAATTTTAAGGAGAAA+CGG - chr6_3:93729276-93729295 Msa0965810:intron 30.0%
ATTTGTAAACTGTAAGGTCA+CGG - chr6_3:93729516-93729535 Msa0965810:CDS 30.0%
GACAATATCATCATTCCTAA+AGG - chr6_3:93729610-93729629 Msa0965810:intron 30.0%
ATATCATCATTCCTAAAGGA+TGG - chr6_3:93729614-93729633 Msa0965810:intron 30.0%
TTCCTAAAGGATGGTATAAT+TGG - chr6_3:93729623-93729642 Msa0965810:intron 30.0%
TCCTAAAGGATGGTATAATT+GGG - chr6_3:93729624-93729643 Msa0965810:intron 30.0%
AGAAAGTGATATATAGAGAG+AGG + chr6_3:93729687-93729706 None:intergenic 30.0%
CTTAGGGAAATAAATCATAG+AGG - chr6_3:93729829-93729848 Msa0965810:intron 30.0%
! GGTTATGATAATTTGGAGTT+CGG - chr6_3:93729897-93729916 Msa0965810:intron 30.0%
AACTTATAGGAACTCTTTGT+TGG - chr6_3:93730533-93730552 Msa0965810:intron 30.0%
TCTAAATACAGAGAATGTTC+TGG - chr6_3:93730588-93730607 Msa0965810:intron 30.0%
AATACTGGCATCAAATTTAG+TGG + chr6_3:93730650-93730669 None:intergenic 30.0%
ATCTATATACCAGCAAATAC+TGG + chr6_3:93730665-93730684 None:intergenic 30.0%
GCTGGTATATAGATAAGATA+AGG - chr6_3:93730671-93730690 Msa0965810:intron 30.0%
AGTTCAATATATGAAGCCAT+GGG + chr6_3:93730744-93730763 None:intergenic 30.0%
AAGTTCAATATATGAAGCCA+TGG + chr6_3:93730745-93730764 None:intergenic 30.0%
!!! CAACATTTTTTTGGTTACGA+TGG + chr6_3:93731152-93731171 None:intergenic 30.0%
CTTTCACTTACCTTTATTGA+TGG - chr6_3:93731352-93731371 Msa0965810:five_prime_UTR 30.0%
! TGATGGAGAATGGTATGTTT+TGG + chr6_3:93726408-93726427 None:intergenic 35.0%
!! ATGAAATGGGTGAGTTTTGT+TGG - chr6_3:93726624-93726643 Msa0965810:intron 35.0%
AATGGAAGGAAGAGAATCAA+TGG + chr6_3:93726760-93726779 None:intergenic 35.0%
TCTTGTTAGAGTTGTCATCA+AGG - chr6_3:93726782-93726801 Msa0965810:intron 35.0%
ACAACCACACTACAAACAAA+AGG + chr6_3:93726854-93726873 None:intergenic 35.0%
!!! TTTTTAATTTGCGGTCACGT+CGG - chr6_3:93726882-93726901 Msa0965810:intron 35.0%
GCGAAAAGACATAAAAAACC+TGG - chr6_3:93727057-93727076 Msa0965810:intron 35.0%
GAATACACGAGATTTGATTG+TGG + chr6_3:93727496-93727515 None:intergenic 35.0%
! TCGATTTTTCTTTTGAGCCA+AGG - chr6_3:93727535-93727554 Msa0965810:intron 35.0%
ATCTCCTTCTATGGTTATGA+AGG + chr6_3:93727628-93727647 None:intergenic 35.0%
TTCATAACCATAGAAGGAGA+TGG - chr6_3:93727627-93727646 Msa0965810:intron 35.0%
CAACAGACATCGTATATATG+CGG - chr6_3:93727875-93727894 Msa0965810:intron 35.0%
!!! TAGCCCTTATTTTGACTTGA+AGG + chr6_3:93727905-93727924 None:intergenic 35.0%
!! GCAGATACAGCATCATTTTT+AGG - chr6_3:93728197-93728216 Msa0965810:CDS 35.0%
TTGTACAAGGGATCTAGATT+AGG + chr6_3:93728456-93728475 None:intergenic 35.0%
AGTCCTTTCATCTTGTACAA+GGG + chr6_3:93728468-93728487 None:intergenic 35.0%
TGCCCTTTAAATTGGATTTG+GGG + chr6_3:93728532-93728551 None:intergenic 35.0%
GTGCCCTTTAAATTGGATTT+GGG + chr6_3:93728533-93728552 None:intergenic 35.0%
AGTGCCCTTTAAATTGGATT+TGG + chr6_3:93728534-93728553 None:intergenic 35.0%
ATCATGTACATTGAGTTAGG+TGG - chr6_3:93728576-93728595 Msa0965810:intron 35.0%
! ACAAATTTAGGATGAGGTGA+TGG - chr6_3:93728869-93728888 Msa0965810:intron 35.0%
! GTTCTGAATTCAATGAATCG+AGG - chr6_3:93729184-93729203 Msa0965810:intron 35.0%
CCGTTTCTCCTTAAAATTTC+AGG + chr6_3:93729279-93729298 None:intergenic 35.0%
CATGCAATAGCAAGAAATAC+AGG - chr6_3:93729442-93729461 Msa0965810:CDS 35.0%
TTTGTAAACTGTAAGGTCAC+GGG - chr6_3:93729517-93729536 Msa0965810:CDS 35.0%
ACTATATCTTGGAAGAGCTT+GGG - chr6_3:93729549-93729568 Msa0965810:CDS 35.0%
CCTAAAGGATGGTATAATTG+GGG - chr6_3:93729625-93729644 Msa0965810:intron 35.0%
GATACATACATTTCACGGTT+AGG + chr6_3:93729655-93729674 None:intergenic 35.0%
TAGTATAGTAGACACACACA+TGG - chr6_3:93729740-93729759 Msa0965810:intron 35.0%
TAACCATTTCACCTGAGAAT+CGG + chr6_3:93729882-93729901 None:intergenic 35.0%
AGGCTAGAGTATGTTAGTAA+CGG - chr6_3:93730022-93730041 Msa0965810:CDS 35.0%
! TTAGTAACGGGATTCAACTA+TGG - chr6_3:93730035-93730054 Msa0965810:CDS 35.0%
CCTCCTATATATCACTTCAA+CGG - chr6_3:93730059-93730078 Msa0965810:CDS 35.0%
ACTCCGTTGAAGTGATATAT+AGG + chr6_3:93730065-93730084 None:intergenic 35.0%
! TTAGAGTAGTCTGGTAGTTT+TGG + chr6_3:93730093-93730112 None:intergenic 35.0%
TACGACAAATTAGAGTAGTC+TGG + chr6_3:93730102-93730121 None:intergenic 35.0%
GGTTTCGTATGAATTGTGTT+AGG - chr6_3:93730184-93730203 Msa0965810:intron 35.0%
TCCAAAAGATAGCACTTGTA+TGG - chr6_3:93730443-93730462 Msa0965810:intron 35.0%
! ACCATACAAGTGCTATCTTT+TGG + chr6_3:93730447-93730466 None:intergenic 35.0%
TTTGTTGGTACCACTATTGA+GGG - chr6_3:93730548-93730567 Msa0965810:intron 35.0%
! TTATCCTTTTCCCTCAATAG+TGG + chr6_3:93730561-93730580 None:intergenic 35.0%
AATTTGATGCCAGTATTTGC+TGG - chr6_3:93730653-93730672 Msa0965810:intron 35.0%
TTGTGATCACATTGTGGTAA+GGG + chr6_3:93730781-93730800 None:intergenic 35.0%
ATTGTGATCACATTGTGGTA+AGG + chr6_3:93730782-93730801 None:intergenic 35.0%
TTACCACAATGTGATCACAA+TGG - chr6_3:93730781-93730800 Msa0965810:intron 35.0%
!!! ATGGGCATGCAACATTTTTT+TGG + chr6_3:93731161-93731180 None:intergenic 35.0%
TATGGACAATACAAATGCAC+AGG - chr6_3:93731259-93731278 Msa0965810:exon 35.0%
ACCTATGATTACGAGCACTA+TGG - chr6_3:93726355-93726374 Msa0965810:CDS 40.0%
ACCATAGTGCTCGTAATCAT+AGG + chr6_3:93726359-93726378 None:intergenic 40.0%
! GTCTGCTCTTGTTGTATTGT+TGG + chr6_3:93726586-93726605 None:intergenic 40.0%
TTGTCATCAAGGTTCATGCA+GGG - chr6_3:93726793-93726812 Msa0965810:intron 40.0%
TTTACATCTCGGATGAGCTT+TGG - chr6_3:93727020-93727039 Msa0965810:intron 40.0%
!! CTTTGGTGTTTGTCTGCATT+TGG - chr6_3:93727146-93727165 Msa0965810:intron 40.0%
CGAGATTTGATTGTGGAGTT+CGG + chr6_3:93727489-93727508 None:intergenic 40.0%
AGCAATTGGAAAACAAGCAG+TGG - chr6_3:93728160-93728179 Msa0965810:CDS 40.0%
GATCCCTTGTACAAGATGAA+AGG - chr6_3:93728462-93728481 Msa0965810:intron 40.0%
GAGTCCTTTCATCTTGTACA+AGG + chr6_3:93728469-93728488 None:intergenic 40.0%
!! CTCATTCTAGCTTGAAACCT+TGG + chr6_3:93729305-93729324 None:intergenic 40.0%
AGCAGTATGTTACAAGACAC+AGG - chr6_3:93729487-93729506 Msa0965810:CDS 40.0%
TTGTAAACTGTAAGGTCACG+GGG - chr6_3:93729518-93729537 Msa0965810:CDS 40.0%
CACTATATCTTGGAAGAGCT+TGG - chr6_3:93729548-93729567 Msa0965810:CDS 40.0%
CTATATCTTGGAAGAGCTTG+GGG - chr6_3:93729550-93729569 Msa0965810:CDS 40.0%
GCAAAGACAACTCGTGAAAA+AGG + chr6_3:93729577-93729596 None:intergenic 40.0%
CCCCAATTATACCATCCTTT+AGG + chr6_3:93729628-93729647 None:intergenic 40.0%
TTCATAACACTCCGATTCTC+AGG - chr6_3:93729868-93729887 Msa0965810:intron 40.0%
TTGGAGTTCGGTCGATAATA+AGG - chr6_3:93729909-93729928 Msa0965810:intron 40.0%
TGGAGTTCGGTCGATAATAA+GGG - chr6_3:93729910-93729929 Msa0965810:intron 40.0%
GGCTAGAGTATGTTAGTAAC+GGG - chr6_3:93730023-93730042 Msa0965810:CDS 40.0%
CCGTTGAAGTGATATATAGG+AGG + chr6_3:93730062-93730081 None:intergenic 40.0%
! GAGGGTGTATATAGCATAAC+AGG + chr6_3:93730479-93730498 None:intergenic 40.0%
CTTTGTTGGTACCACTATTG+AGG - chr6_3:93730547-93730566 Msa0965810:intron 40.0%
ATATGAAGCCATGGGATTAG+TGG + chr6_3:93730736-93730755 None:intergenic 40.0%
ACACCATTGTGATCACATTG+TGG + chr6_3:93730787-93730806 None:intergenic 40.0%
ACAATGTGATCACAATGGTG+TGG - chr6_3:93730786-93730805 Msa0965810:intron 40.0%
CACTTTACGAGCTTCATGTT+AGG + chr6_3:93730984-93731003 None:intergenic 40.0%
AATGTTGCATGCCCATTAGT+AGG - chr6_3:93731165-93731184 Msa0965810:CDS 40.0%
ATAGAACACAGTCCTGATAG+TGG + chr6_3:93731242-93731261 None:intergenic 40.0%
ACTATCAGGACTGTGTTCTA+TGG - chr6_3:93731241-93731260 Msa0965810:CDS 40.0%
CCATTCAGTCCCATCAATAA+AGG + chr6_3:93731365-93731384 None:intergenic 40.0%
CCTTTATTGATGGGACTGAA+TGG - chr6_3:93731362-93731381 Msa0965810:five_prime_UTR 40.0%
! CCGTTTCGAGTAGAACGTAT+CGG + chr6_3:93726555-93726574 None:intergenic 45.0%
CCGATACGTTCTACTCGAAA+CGG - chr6_3:93726552-93726571 Msa0965810:intron 45.0%
GTTGTCATCAAGGTTCATGC+AGG - chr6_3:93726792-93726811 Msa0965810:intron 45.0%
TGTCATCAAGGTTCATGCAG+GGG - chr6_3:93726794-93726813 Msa0965810:intron 45.0%
CTCAATTTGGTCTGACATCC+AGG + chr6_3:93727078-93727097 None:intergenic 45.0%
TGAGGACTCTGCACCAATAA+GGG + chr6_3:93727339-93727358 None:intergenic 45.0%
TTGAGGACTCTGCACCAATA+AGG + chr6_3:93727340-93727359 None:intergenic 45.0%
TATTGGTGCAGAGTCCTCAA+TGG - chr6_3:93727340-93727359 Msa0965810:intron 45.0%
AGTCCTCAATGGTACGATTC+TGG - chr6_3:93727351-93727370 Msa0965810:intron 45.0%
GTCCTCAATGGTACGATTCT+GGG - chr6_3:93727352-93727371 Msa0965810:intron 45.0%
ATCCCAGAATCGTACCATTG+AGG + chr6_3:93727357-93727376 None:intergenic 45.0%
GTCTGTCTCTGACTACATTG+AGG + chr6_3:93727458-93727477 None:intergenic 45.0%
ATCTGCACCATCTCCTTCTA+TGG + chr6_3:93727637-93727656 None:intergenic 45.0%
GGGAATCCATTGGGAACATA+TGG - chr6_3:93727705-93727724 Msa0965810:intron 45.0%
GCTGAACCATATGTTCCCAA+TGG + chr6_3:93727714-93727733 None:intergenic 45.0%
!! GCTTGTTTTCCAATTGCTCC+AGG + chr6_3:93728158-93728177 None:intergenic 45.0%
CAATGCGCTCTCTCTATTTG+AGG - chr6_3:93728319-93728338 Msa0965810:intron 45.0%
! ATGGTAACCCAGTCTAAGGT+AGG - chr6_3:93728888-93728907 Msa0965810:intron 45.0%
! TGGTAACCCAGTCTAAGGTA+GGG - chr6_3:93728889-93728908 Msa0965810:intron 45.0%
AGACATCCCTACCTTAGACT+GGG + chr6_3:93728898-93728917 None:intergenic 45.0%
! TCTAAGGTAGGGATGTCTCT+AGG - chr6_3:93728900-93728919 Msa0965810:intron 45.0%
CTAAGGTAGGGATGTCTCTA+GGG - chr6_3:93728901-93728920 Msa0965810:intron 45.0%
! AGTATTGGGTTCGGAGAATC+TGG + chr6_3:93728991-93729010 None:intergenic 45.0%
! TTAAGGAGAAACGGACTCCA+AGG - chr6_3:93729285-93729304 Msa0965810:intron 45.0%
ACTCCGATTCTCAGGTGAAA+TGG - chr6_3:93729876-93729895 Msa0965810:intron 45.0%
GGTACCACTATTGAGGGAAA+AGG - chr6_3:93730554-93730573 Msa0965810:intron 45.0%
TGTACACTACCACCACTATC+AGG - chr6_3:93731227-93731246 Msa0965810:CDS 45.0%
CAATACAAATGCACAGGACC+TGG - chr6_3:93731265-93731284 Msa0965810:exon 45.0%
!!! GTTTTGCAGGGAGAGTATCA+TGG - chr6_3:93731293-93731312 Msa0965810:five_prime_UTR 45.0%
!! TTTCAAAATAAAATAAATAT+TGG + chr6_3:93730501-93730520 None:intergenic 5.0%
! AATGGATTCCCTCTTGGACC+AGG + chr6_3:93727696-93727715 None:intergenic 50.0%
TGGTCCAAGAGGGAATCCAT+TGG - chr6_3:93727695-93727714 Msa0965810:intron 50.0%
GGTCCAAGAGGGAATCCATT+GGG - chr6_3:93727696-93727715 Msa0965810:intron 50.0%
! GTTCCCAATGGATTCCCTCT+TGG + chr6_3:93727702-93727721 None:intergenic 50.0%
! ACTTTTCCTCTTCCTGCACC+TGG - chr6_3:93728137-93728156 Msa0965810:CDS 50.0%
TTTCCAATTGCTCCAGGTGC+AGG + chr6_3:93728152-93728171 None:intergenic 50.0%
! GGTGATGGTAACCCAGTCTA+AGG - chr6_3:93728884-93728903 Msa0965810:intron 50.0%
GAGACATCCCTACCTTAGAC+TGG + chr6_3:93728899-93728918 None:intergenic 50.0%
!! ACAGGAGCACTAACAGCACA+AGG - chr6_3:93729460-93729479 Msa0965810:CDS 50.0%
GAGCACTAACAGCACAAGGA+AGG - chr6_3:93729464-93729483 Msa0965810:CDS 50.0%
!! GGGTCAGGAGCACTATATCT+TGG - chr6_3:93729538-93729557 Msa0965810:CDS 50.0%
TGTGTGAGCCACTAATCCCA+TGG - chr6_3:93730725-93730744 Msa0965810:intron 50.0%
ATTTGCCGTTGCTCTGCAGT+CGG + chr6_3:93730894-93730913 None:intergenic 50.0%
!! GAACACAGTCCTGATAGTGG+TGG + chr6_3:93731239-93731258 None:intergenic 50.0%
! GACCTGGAGCAAGTTTTGCA+GGG - chr6_3:93731281-93731300 Msa0965810:five_prime_UTR 50.0%
CTGCAACACCTGGTCCAAGA+GGG - chr6_3:93727685-93727704 Msa0965810:intron 55.0%
ATTGCTCCAGGTGCAGGAAG+AGG + chr6_3:93728146-93728165 None:intergenic 55.0%
CTTCCTGCACCTGGAGCAAT+TGG - chr6_3:93728146-93728165 Msa0965810:CDS 55.0%
AACTGTAAGGTCACGGGGTC+AGG - chr6_3:93729523-93729542 Msa0965810:CDS 55.0%
! GGACCTGGAGCAAGTTTTGC+AGG - chr6_3:93731280-93731299 Msa0965810:five_prime_UTR 55.0%
! CTCCCTGCAAAACTTGCTCC+AGG + chr6_3:93731286-93731305 None:intergenic 55.0%
GGTGACACTGCTGCAACACC+TGG - chr6_3:93727675-93727694 Msa0965810:intron 60.0%
GCTGCAACACCTGGTCCAAG+AGG - chr6_3:93727684-93727703 Msa0965810:intron 60.0%
!! ATGCGCCGACTGCAGAGCAA+CGG - chr6_3:93730886-93730905 Msa0965810:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 93726335 93731396 93726335 ID=Msa0965810;Name=Msa0965810
chr6_3 mRNA 93726335 93731396 93726335 ID=Msa0965810-mRNA-1;Parent=Msa0965810;Name=Msa0965810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=124|0.75|0.8|0.8|1|1|5|0|381
chr6_3 exon 93726335 93726482 93726335 ID=Msa0965810-mRNA-1:exon:17157;Parent=Msa0965810-mRNA-1
chr6_3 exon 93728066 93728301 93728066 ID=Msa0965810-mRNA-1:exon:17156;Parent=Msa0965810-mRNA-1
chr6_3 exon 93729391 93729597 93729391 ID=Msa0965810-mRNA-1:exon:17155;Parent=Msa0965810-mRNA-1
chr6_3 exon 93729946 93730135 93729946 ID=Msa0965810-mRNA-1:exon:17154;Parent=Msa0965810-mRNA-1
chr6_3 exon 93730908 93731396 93730908 ID=Msa0965810-mRNA-1:exon:17153;Parent=Msa0965810-mRNA-1
chr6_3 five_prime_UTR 93731273 93731396 93731273 ID=Msa0965810-mRNA-1:five_prime_utr;Parent=Msa0965810-mRNA-1
chr6_3 CDS 93730908 93731272 93730908 ID=Msa0965810-mRNA-1:cds;Parent=Msa0965810-mRNA-1
chr6_3 CDS 93729946 93730135 93729946 ID=Msa0965810-mRNA-1:cds;Parent=Msa0965810-mRNA-1
chr6_3 CDS 93729391 93729597 93729391 ID=Msa0965810-mRNA-1:cds;Parent=Msa0965810-mRNA-1
chr6_3 CDS 93728066 93728301 93728066 ID=Msa0965810-mRNA-1:cds;Parent=Msa0965810-mRNA-1
chr6_3 CDS 93726335 93726482 93726335 ID=Msa0965810-mRNA-1:cds;Parent=Msa0965810-mRNA-1
Gene Sequence

>Msa0965810

ATGTCAAACATGCATTACATTTTCAGCATGTTGTTATTTCTTCTTCTTGTACAAAATCTCACCACAATACATTGTCATACAAAAGGAATTCGACCGATACGTTCTACTCGAAACGGTTTATCGACCAACAATACAACAAGAGCAGACTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTAATCTTAAACATACTGTTTACAAGGCTGCAAAAAATAAGCTCTTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTTGGAGATTTTGATACAATTCAAGATGCCATTGATTCTCTTCCTTCCATTAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTAAAATCCTTCATAACCATAGAAGGAGATGGTGCAGATACAACAATTGTTCAATGGGGTGACACTGCTGCAACACCTGGTCCAAGAGGGAATCCATTGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATCACATTCAAAAACACTTTTCCTCTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTGGCATTTAGAATTTCAGCAGATACAGCATCATTTTTAGGGTGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTATATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCGCTCTCTCTATTTGAGGGATGTCACGTGCATGCAATAGCAAGAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTAAACTGTAAGGTCACGGGGTCAGGAGCACTATATCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTGTCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGACCTGGAGCAAGTTTTGCAGGGAGAGTATCATGGTCAAGAGAACTTACTGATGAAGAAGCTAGACCTTTTCTTTCACTTACCTTTATTGATGGGACTGAATGGATCGATTTTTAG
Protein sequence

>Msa0965810

MSNMHYIFSMLLFLLLVQNLTTIHCHTKGIRPIRSTRNGLSTNNTTRADLAEQQFMKWVSFVGNLKHTVYKAAKNKLFASYTLHVDKNPSFGDFDTIQDAIDSLPSINLVRVVIKVHAGVYTEKVNIPPLKSFITIEGDGADTTIVQWGDTAATPGPRGNPLGTYGSATFAVNSPYFIAKNITFKNTFPLPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEARPFLSLTFIDGTEWIDF*