Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0926300 | Msa1000790 | 0.905910 | 2.602513e-80 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 54 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTAAGAACAATTAAAATT+TGG | 0.187988 | 6_2:+69871007 | Msa0926300:CDS |
GATGGGATGAGGTGAGGTTC+TGG | 0.272161 | 6_2:-69870765 | None:intergenic |
GAAGAGAAGTGAAACGGTTT+TGG | 0.273659 | 6_2:-69870713 | None:intergenic |
ACAAGAGGATCATCTAGTTC+TGG | 0.312368 | 6_2:+69872470 | Msa0926300:CDS |
CATTTCTTCCTCTTGCTCCT+TGG | 0.325994 | 6_2:-69872266 | None:intergenic |
CACTCGAAACTCATCTATAA+AGG | 0.344139 | 6_2:+69871048 | Msa0926300:CDS |
GTAGTGGGAAGAGGTCTTCT+TGG | 0.384876 | 6_2:+69872297 | Msa0926300:CDS |
AATTCCATTCTCTGCAACTT+TGG | 0.390172 | 6_2:-69872342 | None:intergenic |
TTGCACCTTGTGTTGGAAAC+TGG | 0.401274 | 6_2:+69872363 | Msa0926300:CDS |
TGCATTATGTGCAGGTAGCT+TGG | 0.407949 | 6_2:+69872439 | Msa0926300:CDS |
ATGGGATGAGGTGAGGTTCT+GGG | 0.418200 | 6_2:-69870764 | None:intergenic |
CAAGAGGATCATCTAGTTCT+GGG | 0.436940 | 6_2:+69872471 | Msa0926300:CDS |
ACACAAGAAAGTCCACGAAC+AGG | 0.438225 | 6_2:-69871439 | None:intergenic |
TGTCTGCTAGGAATGTTGTT+GGG | 0.450777 | 6_2:+69872400 | Msa0926300:CDS |
AAGAAATGATCTTCAAGTAG+TGG | 0.454455 | 6_2:+69872281 | Msa0926300:CDS |
GGTTCCAAAGTTGCAGAGAA+TGG | 0.465975 | 6_2:+69872338 | Msa0926300:CDS |
CACATTCAAAACCCTGTTCG+TGG | 0.467689 | 6_2:+69871427 | Msa0926300:CDS |
AGAGGATTGACAGAGGCAAT+AGG | 0.481013 | 6_2:-69870803 | None:intergenic |
TGGAAGATTGCAGAGAAAGA+AGG | 0.486096 | 6_2:+69872317 | Msa0926300:CDS |
TATGAAAGAGTGAGAGTGAG+AGG | 0.490718 | 6_2:-69870821 | None:intergenic |
CACATTCAAAACCATGTTCG+TGG | 0.497210 | 6_2:+69871464 | Msa0926300:CDS |
TGGTTCAAATTATAAAAGCT+TGG | 0.500948 | 6_2:+69871931 | Msa0926300:CDS |
AAATCTCCCCTCACTCATCA+TGG | 0.506525 | 6_2:+69870738 | Msa0926300:exon |
GAGGGCGATGGAGCGATGAA+AGG | 0.512177 | 6_2:-69870856 | None:intergenic |
CTGTCTGCTAGGAATGTTGT+TGG | 0.512759 | 6_2:+69872399 | Msa0926300:CDS |
TGGGTTTCCATGATGAGTGA+GGG | 0.516210 | 6_2:-69870745 | None:intergenic |
GTCTGCTAGGAATGTTGTTG+GGG | 0.524420 | 6_2:+69872401 | Msa0926300:CDS |
CTGGGTTTCCATGATGAGTG+AGG | 0.527422 | 6_2:-69870746 | None:intergenic |
ATTTACGAAGAGAAGTGAAA+CGG | 0.537781 | 6_2:-69870719 | None:intergenic |
TAGCAACAATACTGTCTGCT+AGG | 0.542055 | 6_2:+69872388 | Msa0926300:CDS |
GATCTTCAAGTAGTGGGAAG+AGG | 0.542101 | 6_2:+69872288 | Msa0926300:CDS |
AGGGCGATGGAGCGATGAAA+GGG | 0.544961 | 6_2:-69870855 | None:intergenic |
AAAATACCTTTGTGAGGGAG+AGG | 0.545723 | 6_2:-69870875 | None:intergenic |
AGAAAGATTGCATTATGTGC+AGG | 0.545965 | 6_2:+69872431 | Msa0926300:CDS |
AATGGAATTGCACCTTGTGT+TGG | 0.547259 | 6_2:+69872356 | Msa0926300:CDS |
AGAAATGATCTTCAAGTAGT+GGG | 0.557609 | 6_2:+69872282 | Msa0926300:CDS |
CTTTGTGAGGGAGAGGGCGA+TGG | 0.557738 | 6_2:-69870868 | None:intergenic |
AGAGAGAGGTCGATGGGATG+AGG | 0.558033 | 6_2:-69870776 | None:intergenic |
TAACAGGACCAAGGAGCAAG+AGG | 0.582357 | 6_2:+69872258 | Msa0926300:intron |
AGGCAATAGGTTGCAGAGAG+AGG | 0.587185 | 6_2:-69870790 | None:intergenic |
CTACACCAGTTTCCAACACA+AGG | 0.592815 | 6_2:-69872368 | None:intergenic |
CACAAGAAAGTCCACGAACA+GGG | 0.597521 | 6_2:-69871438 | None:intergenic |
AAATACCTTTGTGAGGGAGA+GGG | 0.598580 | 6_2:-69870874 | None:intergenic |
GGTTGCAGAGAGAGGTCGAT+GGG | 0.602611 | 6_2:-69870782 | None:intergenic |
GGGTTTCCATGATGAGTGAG+GGG | 0.628046 | 6_2:-69870744 | None:intergenic |
TGATAATTATATGTTTGATG+TGG | 0.634378 | 6_2:+69870963 | Msa0926300:intron |
TTTACTTTATAACAGGACCA+AGG | 0.637117 | 6_2:+69872249 | Msa0926300:intron |
ACTGAGAAAGTCCACGAACA+TGG | 0.644673 | 6_2:-69871475 | None:intergenic |
GAGGTCGATGGGATGAGGTG+AGG | 0.647680 | 6_2:-69870771 | None:intergenic |
GAGAGTGAGAGGATTGACAG+AGG | 0.656785 | 6_2:-69870810 | None:intergenic |
AGGTTGCAGAGAGAGGTCGA+TGG | 0.664194 | 6_2:-69870783 | None:intergenic |
CATCGCCCTCTCCCTCACAA+AGG | 0.667019 | 6_2:+69870869 | Msa0926300:CDS |
TCTCACTCTTTCATACACGA+AGG | 0.696436 | 6_2:+69870829 | Msa0926300:CDS |
AGCTTGGAAAGAGAAACAAG+AGG | 0.730779 | 6_2:+69872455 | Msa0926300:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATGAAATAAAATAGA+GGG | - | chr6_2:69870658-69870677 | None:intergenic | 10.0% |
!!! | TTTTTAATGAAATAAAATAG+AGG | - | chr6_2:69870659-69870678 | None:intergenic | 10.0% |
!! | TTAAAAAAAATCCATAAAAA+CGG | - | chr6_2:69871386-69871405 | None:intergenic | 10.0% |
!!! | GATTTTTTTTTTATTGTAAT+AGG | + | chr6_2:69871885-69871904 | Msa0926300:intron | 10.0% |
!!! | TTTTAATGAAATAAAATAGA+GGG | - | chr6_2:69870658-69870677 | None:intergenic | 10.0% |
!!! | TTTTTAATGAAATAAAATAG+AGG | - | chr6_2:69870659-69870678 | None:intergenic | 10.0% |
!! | TTAAAAAAAATCCATAAAAA+CGG | - | chr6_2:69871386-69871405 | None:intergenic | 10.0% |
!!! | GATTTTTTTTTTATTGTAAT+AGG | + | chr6_2:69871885-69871904 | Msa0926300:intron | 10.0% |
!! | GATTAAGAACAATTAAAATT+TGG | + | chr6_2:69871007-69871026 | Msa0926300:CDS | 15.0% |
!!! | TTAATTTTATGATTATGATC+AGG | + | chr6_2:69871312-69871331 | Msa0926300:intron | 15.0% |
!!! | GTTTTTATGGATTTTTTTTA+AGG | + | chr6_2:69871385-69871404 | Msa0926300:intron | 15.0% |
!!! | AGATTATTATTTGATAGTTT+TGG | + | chr6_2:69871726-69871745 | Msa0926300:intron | 15.0% |
!!! | TTAGTATAAGATTTCATTTT+TGG | + | chr6_2:69872517-69872536 | Msa0926300:CDS | 15.0% |
!! | GATTAAGAACAATTAAAATT+TGG | + | chr6_2:69871007-69871026 | Msa0926300:CDS | 15.0% |
!!! | TTAATTTTATGATTATGATC+AGG | + | chr6_2:69871312-69871331 | Msa0926300:intron | 15.0% |
!!! | GTTTTTATGGATTTTTTTTA+AGG | + | chr6_2:69871385-69871404 | Msa0926300:intron | 15.0% |
!!! | AGATTATTATTTGATAGTTT+TGG | + | chr6_2:69871726-69871745 | Msa0926300:intron | 15.0% |
!!! | TTAGTATAAGATTTCATTTT+TGG | + | chr6_2:69872517-69872536 | Msa0926300:CDS | 15.0% |
!! | ATTAAAACAATTCAAAGACA+GGG | - | chr6_2:69870938-69870957 | None:intergenic | 20.0% |
!! | TGATAATTATATGTTTGATG+TGG | + | chr6_2:69870963-69870982 | Msa0926300:intron | 20.0% |
!!! | GTTGATTTCAATGAAAAATT+GGG | + | chr6_2:69870985-69871004 | Msa0926300:CDS | 20.0% |
!! | ACAAATCAATATTCAAAGAT+GGG | - | chr6_2:69871090-69871109 | None:intergenic | 20.0% |
!! | AACAAATCAATATTCAAAGA+TGG | - | chr6_2:69871091-69871110 | None:intergenic | 20.0% |
!! | ATCTGTATAAATCAAATCAA+AGG | + | chr6_2:69871357-69871376 | Msa0926300:intron | 20.0% |
!! | CTATCAAATAATAATCTTTG+TGG | - | chr6_2:69871723-69871742 | None:intergenic | 20.0% |
!!! | TATTCAATTCTCACATTTTA+TGG | + | chr6_2:69871780-69871799 | Msa0926300:intron | 20.0% |
!!! | TATTGTAATAGGTTGTTTTT+AGG | + | chr6_2:69871896-69871915 | Msa0926300:intron | 20.0% |
!!! | ATTGTAATAGGTTGTTTTTA+GGG | + | chr6_2:69871897-69871916 | Msa0926300:intron | 20.0% |
!!! | AAATTGAAGAGCTTTTAAAA+TGG | - | chr6_2:69871980-69871999 | None:intergenic | 20.0% |
!!! | TCAACGAATTGTTTAAAATA+TGG | - | chr6_2:69872048-69872067 | None:intergenic | 20.0% |
!! | ATTGTTAAAAGTAGATTTGT+TGG | + | chr6_2:69872074-69872093 | Msa0926300:intron | 20.0% |
!!! | TTGTTAAAAGTAGATTTGTT+GGG | + | chr6_2:69872075-69872094 | Msa0926300:intron | 20.0% |
!!! | TATCTGTTATTTTGATTTGT+TGG | + | chr6_2:69872110-69872129 | Msa0926300:intron | 20.0% |
!!! | ATCTGTTATTTTGATTTGTT+GGG | + | chr6_2:69872111-69872130 | Msa0926300:intron | 20.0% |
!! | ATGAGAATTTACTTTATAAC+AGG | + | chr6_2:69872242-69872261 | Msa0926300:intron | 20.0% |
!! | ATTAAAACAATTCAAAGACA+GGG | - | chr6_2:69870938-69870957 | None:intergenic | 20.0% |
!! | TGATAATTATATGTTTGATG+TGG | + | chr6_2:69870963-69870982 | Msa0926300:intron | 20.0% |
!!! | GTTGATTTCAATGAAAAATT+GGG | + | chr6_2:69870985-69871004 | Msa0926300:CDS | 20.0% |
!! | ACAAATCAATATTCAAAGAT+GGG | - | chr6_2:69871090-69871109 | None:intergenic | 20.0% |
!! | AACAAATCAATATTCAAAGA+TGG | - | chr6_2:69871091-69871110 | None:intergenic | 20.0% |
!! | ATCTGTATAAATCAAATCAA+AGG | + | chr6_2:69871357-69871376 | Msa0926300:intron | 20.0% |
!! | CTATCAAATAATAATCTTTG+TGG | - | chr6_2:69871723-69871742 | None:intergenic | 20.0% |
!!! | TATTCAATTCTCACATTTTA+TGG | + | chr6_2:69871780-69871799 | Msa0926300:intron | 20.0% |
!!! | TATTGTAATAGGTTGTTTTT+AGG | + | chr6_2:69871896-69871915 | Msa0926300:intron | 20.0% |
!!! | ATTGTAATAGGTTGTTTTTA+GGG | + | chr6_2:69871897-69871916 | Msa0926300:intron | 20.0% |
!!! | AAATTGAAGAGCTTTTAAAA+TGG | - | chr6_2:69871980-69871999 | None:intergenic | 20.0% |
!!! | TCAACGAATTGTTTAAAATA+TGG | - | chr6_2:69872048-69872067 | None:intergenic | 20.0% |
!! | ATTGTTAAAAGTAGATTTGT+TGG | + | chr6_2:69872074-69872093 | Msa0926300:intron | 20.0% |
!!! | TTGTTAAAAGTAGATTTGTT+GGG | + | chr6_2:69872075-69872094 | Msa0926300:intron | 20.0% |
!!! | TATCTGTTATTTTGATTTGT+TGG | + | chr6_2:69872110-69872129 | Msa0926300:intron | 20.0% |
!!! | ATCTGTTATTTTGATTTGTT+GGG | + | chr6_2:69872111-69872130 | Msa0926300:intron | 20.0% |
!! | ATGAGAATTTACTTTATAAC+AGG | + | chr6_2:69872242-69872261 | Msa0926300:intron | 20.0% |
! | GAATAAAAATACCTTTGTGA+GGG | - | chr6_2:69870883-69870902 | None:intergenic | 25.0% |
! | AGAATAAAAATACCTTTGTG+AGG | - | chr6_2:69870884-69870903 | None:intergenic | 25.0% |
!! | TTCTTTTTCCATAGATCAAT+TGG | + | chr6_2:69870900-69870919 | Msa0926300:intron | 25.0% |
! | CATTAAAACAATTCAAAGAC+AGG | - | chr6_2:69870939-69870958 | None:intergenic | 25.0% |
!! | GGTTGATTTCAATGAAAAAT+TGG | + | chr6_2:69870984-69871003 | Msa0926300:CDS | 25.0% |
! | AGTTAGTAAGGATAAATTTC+TGG | + | chr6_2:69871512-69871531 | Msa0926300:intron | 25.0% |
!! | AAGGATAAATTTCTGGATAT+TGG | + | chr6_2:69871519-69871538 | Msa0926300:intron | 25.0% |
! | TAAATCTGAGTCCAAAATAT+GGG | + | chr6_2:69871673-69871692 | Msa0926300:intron | 25.0% |
! | AAATAATAATCTTTGTGGCA+GGG | - | chr6_2:69871718-69871737 | None:intergenic | 25.0% |
!! | TCTCACATTTTATGGTTTTT+TGG | + | chr6_2:69871788-69871807 | Msa0926300:intron | 25.0% |
!! | CTCACATTTTATGGTTTTTT+GGG | + | chr6_2:69871789-69871808 | Msa0926300:intron | 25.0% |
!!! | ATTTTATGGTTTTTTGGGTT+CGG | + | chr6_2:69871794-69871813 | Msa0926300:intron | 25.0% |
!! | TCGTAGTTTTCTGTATTTTT+CGG | + | chr6_2:69871824-69871843 | Msa0926300:intron | 25.0% |
! | AGAAAATCAAGAATGATGAA+CGG | - | chr6_2:69871863-69871882 | None:intergenic | 25.0% |
! | TGGTTCAAATTATAAAAGCT+TGG | + | chr6_2:69871931-69871950 | Msa0926300:CDS | 25.0% |
! | TTGGGTTTATAATGAAAGTT+GGG | + | chr6_2:69872129-69872148 | Msa0926300:intron | 25.0% |
! | GAATAAAAATACCTTTGTGA+GGG | - | chr6_2:69870883-69870902 | None:intergenic | 25.0% |
! | AGAATAAAAATACCTTTGTG+AGG | - | chr6_2:69870884-69870903 | None:intergenic | 25.0% |
!! | TTCTTTTTCCATAGATCAAT+TGG | + | chr6_2:69870900-69870919 | Msa0926300:intron | 25.0% |
! | CATTAAAACAATTCAAAGAC+AGG | - | chr6_2:69870939-69870958 | None:intergenic | 25.0% |
!! | GGTTGATTTCAATGAAAAAT+TGG | + | chr6_2:69870984-69871003 | Msa0926300:CDS | 25.0% |
! | AGTTAGTAAGGATAAATTTC+TGG | + | chr6_2:69871512-69871531 | Msa0926300:intron | 25.0% |
!! | AAGGATAAATTTCTGGATAT+TGG | + | chr6_2:69871519-69871538 | Msa0926300:intron | 25.0% |
! | TAAATCTGAGTCCAAAATAT+GGG | + | chr6_2:69871673-69871692 | Msa0926300:intron | 25.0% |
! | AAATAATAATCTTTGTGGCA+GGG | - | chr6_2:69871718-69871737 | None:intergenic | 25.0% |
!! | TCTCACATTTTATGGTTTTT+TGG | + | chr6_2:69871788-69871807 | Msa0926300:intron | 25.0% |
!! | CTCACATTTTATGGTTTTTT+GGG | + | chr6_2:69871789-69871808 | Msa0926300:intron | 25.0% |
!!! | ATTTTATGGTTTTTTGGGTT+CGG | + | chr6_2:69871794-69871813 | Msa0926300:intron | 25.0% |
!! | TCGTAGTTTTCTGTATTTTT+CGG | + | chr6_2:69871824-69871843 | Msa0926300:intron | 25.0% |
! | AGAAAATCAAGAATGATGAA+CGG | - | chr6_2:69871863-69871882 | None:intergenic | 25.0% |
! | TGGTTCAAATTATAAAAGCT+TGG | + | chr6_2:69871931-69871950 | Msa0926300:CDS | 25.0% |
! | TTGGGTTTATAATGAAAGTT+GGG | + | chr6_2:69872129-69872148 | Msa0926300:intron | 25.0% |
ATTTACGAAGAGAAGTGAAA+CGG | - | chr6_2:69870722-69870741 | None:intergenic | 30.0% | |
TGATAGAACCAATTGATCTA+TGG | - | chr6_2:69870911-69870930 | None:intergenic | 30.0% | |
!!! | GGTTTTAGGGTTTTTGATTT+GGG | + | chr6_2:69871132-69871151 | Msa0926300:intron | 30.0% |
!! | ATCAAAGGAATCCGTTTTTA+TGG | + | chr6_2:69871372-69871391 | Msa0926300:intron | 30.0% |
!! | TCATCTCTCTAAAGTTAGTA+AGG | + | chr6_2:69871500-69871519 | Msa0926300:intron | 30.0% |
!! | ATATTGGTTCTGAGTATGAA+AGG | + | chr6_2:69871535-69871554 | Msa0926300:intron | 30.0% |
GTAAATCTGAGTCCAAAATA+TGG | + | chr6_2:69871672-69871691 | Msa0926300:intron | 30.0% | |
!!! | GCATTTGTTATCCCATATTT+TGG | - | chr6_2:69871687-69871706 | None:intergenic | 30.0% |
ATATGGGATAACAAATGCTA+AGG | + | chr6_2:69871689-69871708 | Msa0926300:intron | 30.0% | |
AATAATAATCTTTGTGGCAG+GGG | - | chr6_2:69871717-69871736 | None:intergenic | 30.0% | |
CAAATAATAATCTTTGTGGC+AGG | - | chr6_2:69871719-69871738 | None:intergenic | 30.0% | |
!!! | TGATAGTTTTGGTAATCTAG+AGG | + | chr6_2:69871737-69871756 | Msa0926300:intron | 30.0% |
!!! | GATAGTTTTGGTAATCTAGA+GGG | + | chr6_2:69871738-69871757 | Msa0926300:intron | 30.0% |
TAATCTAGAGGGTTAAAGTT+TGG | + | chr6_2:69871749-69871768 | Msa0926300:intron | 30.0% | |
TTAAAATGGACCACACAATA+AGG | - | chr6_2:69871966-69871985 | None:intergenic | 30.0% | |
! | CTCTTCAATTTTATTCCTAC+AGG | + | chr6_2:69871989-69872008 | Msa0926300:intron | 30.0% |
! | CAATTTTATTCCTACAGGTA+AGG | + | chr6_2:69871994-69872013 | Msa0926300:intron | 30.0% |
GTTGGGTTTATAATGAAAGT+TGG | + | chr6_2:69872128-69872147 | Msa0926300:intron | 30.0% | |
CCATTCACAATGTATGAAAA+AGG | - | chr6_2:69872163-69872182 | None:intergenic | 30.0% | |
!! | CCTTTTTCATACATTGTGAA+TGG | + | chr6_2:69872160-69872179 | Msa0926300:intron | 30.0% |
TTTACTTTATAACAGGACCA+AGG | + | chr6_2:69872249-69872268 | Msa0926300:intron | 30.0% | |
AAGAAATGATCTTCAAGTAG+TGG | + | chr6_2:69872281-69872300 | Msa0926300:CDS | 30.0% | |
AGAAATGATCTTCAAGTAGT+GGG | + | chr6_2:69872282-69872301 | Msa0926300:CDS | 30.0% | |
ATTTACGAAGAGAAGTGAAA+CGG | - | chr6_2:69870722-69870741 | None:intergenic | 30.0% | |
TGATAGAACCAATTGATCTA+TGG | - | chr6_2:69870911-69870930 | None:intergenic | 30.0% | |
!!! | GGTTTTAGGGTTTTTGATTT+GGG | + | chr6_2:69871132-69871151 | Msa0926300:intron | 30.0% |
!! | ATCAAAGGAATCCGTTTTTA+TGG | + | chr6_2:69871372-69871391 | Msa0926300:intron | 30.0% |
!! | TCATCTCTCTAAAGTTAGTA+AGG | + | chr6_2:69871500-69871519 | Msa0926300:intron | 30.0% |
!! | ATATTGGTTCTGAGTATGAA+AGG | + | chr6_2:69871535-69871554 | Msa0926300:intron | 30.0% |
GTAAATCTGAGTCCAAAATA+TGG | + | chr6_2:69871672-69871691 | Msa0926300:intron | 30.0% | |
!!! | GCATTTGTTATCCCATATTT+TGG | - | chr6_2:69871687-69871706 | None:intergenic | 30.0% |
ATATGGGATAACAAATGCTA+AGG | + | chr6_2:69871689-69871708 | Msa0926300:intron | 30.0% | |
AATAATAATCTTTGTGGCAG+GGG | - | chr6_2:69871717-69871736 | None:intergenic | 30.0% | |
CAAATAATAATCTTTGTGGC+AGG | - | chr6_2:69871719-69871738 | None:intergenic | 30.0% | |
!!! | TGATAGTTTTGGTAATCTAG+AGG | + | chr6_2:69871737-69871756 | Msa0926300:intron | 30.0% |
!!! | GATAGTTTTGGTAATCTAGA+GGG | + | chr6_2:69871738-69871757 | Msa0926300:intron | 30.0% |
TAATCTAGAGGGTTAAAGTT+TGG | + | chr6_2:69871749-69871768 | Msa0926300:intron | 30.0% | |
TTAAAATGGACCACACAATA+AGG | - | chr6_2:69871966-69871985 | None:intergenic | 30.0% | |
! | CTCTTCAATTTTATTCCTAC+AGG | + | chr6_2:69871989-69872008 | Msa0926300:intron | 30.0% |
! | CAATTTTATTCCTACAGGTA+AGG | + | chr6_2:69871994-69872013 | Msa0926300:intron | 30.0% |
GTTGGGTTTATAATGAAAGT+TGG | + | chr6_2:69872128-69872147 | Msa0926300:intron | 30.0% | |
CCATTCACAATGTATGAAAA+AGG | - | chr6_2:69872163-69872182 | None:intergenic | 30.0% | |
!! | CCTTTTTCATACATTGTGAA+TGG | + | chr6_2:69872160-69872179 | Msa0926300:intron | 30.0% |
TTTACTTTATAACAGGACCA+AGG | + | chr6_2:69872249-69872268 | Msa0926300:intron | 30.0% | |
AAGAAATGATCTTCAAGTAG+TGG | + | chr6_2:69872281-69872300 | Msa0926300:CDS | 30.0% | |
AGAAATGATCTTCAAGTAGT+GGG | + | chr6_2:69872282-69872301 | Msa0926300:CDS | 30.0% | |
CACTCGAAACTCATCTATAA+AGG | + | chr6_2:69871048-69871067 | Msa0926300:CDS | 35.0% | |
TTGCTGCTAGATTGTGATTT+CGG | + | chr6_2:69871110-69871129 | Msa0926300:intron | 35.0% | |
!!! | AGATTGTGATTTCGGGTTTT+AGG | + | chr6_2:69871118-69871137 | Msa0926300:intron | 35.0% |
!!! | GATTGTGATTTCGGGTTTTA+GGG | + | chr6_2:69871119-69871138 | Msa0926300:intron | 35.0% |
!!! | GGGTTTTAGGGTTTTTGATT+TGG | + | chr6_2:69871131-69871150 | Msa0926300:intron | 35.0% |
!! | CTCCTTCAATTTGGGTTTTA+GGG | + | chr6_2:69871171-69871190 | Msa0926300:intron | 35.0% |
AACCCTAAAACCCAAATTGA+AGG | - | chr6_2:69871176-69871195 | None:intergenic | 35.0% | |
AGGTATCTAATCAGTACAGT+AGG | + | chr6_2:69871332-69871351 | Msa0926300:intron | 35.0% | |
GGTATCTAATCAGTACAGTA+GGG | + | chr6_2:69871333-69871352 | Msa0926300:intron | 35.0% | |
GTATCTAATCAGTACAGTAG+GGG | + | chr6_2:69871334-69871353 | Msa0926300:intron | 35.0% | |
TTGTTACTCCAATCCTGTAA+TGG | + | chr6_2:69871581-69871600 | Msa0926300:intron | 35.0% | |
TGTTACTCCAATCCTGTAAT+GGG | + | chr6_2:69871582-69871601 | Msa0926300:intron | 35.0% | |
CTCAGATTTACATACAAGCA+TGG | - | chr6_2:69871663-69871682 | None:intergenic | 35.0% | |
ATAATAATCTTTGTGGCAGG+GGG | - | chr6_2:69871716-69871735 | None:intergenic | 35.0% | |
CAAGAATGATGAACGGATAA+AGG | - | chr6_2:69871856-69871875 | None:intergenic | 35.0% | |
!!! | TAGGTTGTTTTTAGGGCAAT+TGG | + | chr6_2:69871904-69871923 | Msa0926300:intron | 35.0% |
!!! | TTTTTAGGGCAATTGGAAAC+TGG | + | chr6_2:69871911-69871930 | Msa0926300:CDS | 35.0% |
GTTGTGAATACCTTATTGTG+TGG | + | chr6_2:69871953-69871972 | Msa0926300:intron | 35.0% | |
TATCATTGATCCTTACCTGT+AGG | - | chr6_2:69872007-69872026 | None:intergenic | 35.0% | |
AATTCCATTCTCTGCAACTT+TGG | - | chr6_2:69872345-69872364 | None:intergenic | 35.0% | |
AGAAAGATTGCATTATGTGC+AGG | + | chr6_2:69872431-69872450 | Msa0926300:CDS | 35.0% | |
CACTCGAAACTCATCTATAA+AGG | + | chr6_2:69871048-69871067 | Msa0926300:CDS | 35.0% | |
TTGCTGCTAGATTGTGATTT+CGG | + | chr6_2:69871110-69871129 | Msa0926300:intron | 35.0% | |
!!! | AGATTGTGATTTCGGGTTTT+AGG | + | chr6_2:69871118-69871137 | Msa0926300:intron | 35.0% |
!!! | GATTGTGATTTCGGGTTTTA+GGG | + | chr6_2:69871119-69871138 | Msa0926300:intron | 35.0% |
!!! | GGGTTTTAGGGTTTTTGATT+TGG | + | chr6_2:69871131-69871150 | Msa0926300:intron | 35.0% |
!! | CTCCTTCAATTTGGGTTTTA+GGG | + | chr6_2:69871171-69871190 | Msa0926300:intron | 35.0% |
AACCCTAAAACCCAAATTGA+AGG | - | chr6_2:69871176-69871195 | None:intergenic | 35.0% | |
AGGTATCTAATCAGTACAGT+AGG | + | chr6_2:69871332-69871351 | Msa0926300:intron | 35.0% | |
GGTATCTAATCAGTACAGTA+GGG | + | chr6_2:69871333-69871352 | Msa0926300:intron | 35.0% | |
GTATCTAATCAGTACAGTAG+GGG | + | chr6_2:69871334-69871353 | Msa0926300:intron | 35.0% | |
TTGTTACTCCAATCCTGTAA+TGG | + | chr6_2:69871581-69871600 | Msa0926300:intron | 35.0% | |
TGTTACTCCAATCCTGTAAT+GGG | + | chr6_2:69871582-69871601 | Msa0926300:intron | 35.0% | |
CTCAGATTTACATACAAGCA+TGG | - | chr6_2:69871663-69871682 | None:intergenic | 35.0% | |
ATAATAATCTTTGTGGCAGG+GGG | - | chr6_2:69871716-69871735 | None:intergenic | 35.0% | |
CAAGAATGATGAACGGATAA+AGG | - | chr6_2:69871856-69871875 | None:intergenic | 35.0% | |
!!! | TAGGTTGTTTTTAGGGCAAT+TGG | + | chr6_2:69871904-69871923 | Msa0926300:intron | 35.0% |
!!! | TTTTTAGGGCAATTGGAAAC+TGG | + | chr6_2:69871911-69871930 | Msa0926300:CDS | 35.0% |
GTTGTGAATACCTTATTGTG+TGG | + | chr6_2:69871953-69871972 | Msa0926300:intron | 35.0% | |
TATCATTGATCCTTACCTGT+AGG | - | chr6_2:69872007-69872026 | None:intergenic | 35.0% | |
AATTCCATTCTCTGCAACTT+TGG | - | chr6_2:69872345-69872364 | None:intergenic | 35.0% | |
AGAAAGATTGCATTATGTGC+AGG | + | chr6_2:69872431-69872450 | Msa0926300:CDS | 35.0% | |
! | GAAGAGAAGTGAAACGGTTT+TGG | - | chr6_2:69870716-69870735 | None:intergenic | 40.0% |
TATGAAAGAGTGAGAGTGAG+AGG | - | chr6_2:69870824-69870843 | None:intergenic | 40.0% | |
TCTCACTCTTTCATACACGA+AGG | + | chr6_2:69870829-69870848 | Msa0926300:CDS | 40.0% | |
AAATACCTTTGTGAGGGAGA+GGG | - | chr6_2:69870877-69870896 | None:intergenic | 40.0% | |
AAAATACCTTTGTGAGGGAG+AGG | - | chr6_2:69870878-69870897 | None:intergenic | 40.0% | |
TGCTGCTAGATTGTGATTTC+GGG | + | chr6_2:69871111-69871130 | Msa0926300:intron | 40.0% | |
ATTCACGTGCTCCTTCAATT+TGG | + | chr6_2:69871162-69871181 | Msa0926300:intron | 40.0% | |
TTCACGTGCTCCTTCAATTT+GGG | + | chr6_2:69871163-69871182 | Msa0926300:intron | 40.0% | |
!! | GCTCCTTCAATTTGGGTTTT+AGG | + | chr6_2:69871170-69871189 | Msa0926300:intron | 40.0% |
GTTGTCAAAGAGTCATCACA+TGG | - | chr6_2:69871270-69871289 | None:intergenic | 40.0% | |
CACATTCAAAACCATGTTCG+TGG | + | chr6_2:69871464-69871483 | Msa0926300:CDS | 40.0% | |
AATGTTGCCCATTACAGGAT+TGG | - | chr6_2:69871592-69871611 | None:intergenic | 40.0% | |
GACATAATGTTGCCCATTAC+AGG | - | chr6_2:69871597-69871616 | None:intergenic | 40.0% | |
TAATAATCTTTGTGGCAGGG+GGG | - | chr6_2:69871715-69871734 | None:intergenic | 40.0% | |
GAGGGTTAAAGTTTGGAAAG+TGG | + | chr6_2:69871756-69871775 | Msa0926300:intron | 40.0% | |
TGGAAGATTGCAGAGAAAGA+AGG | + | chr6_2:69872317-69872336 | Msa0926300:CDS | 40.0% | |
AATGGAATTGCACCTTGTGT+TGG | + | chr6_2:69872356-69872375 | Msa0926300:CDS | 40.0% | |
TAGCAACAATACTGTCTGCT+AGG | + | chr6_2:69872388-69872407 | Msa0926300:CDS | 40.0% | |
TGTCTGCTAGGAATGTTGTT+GGG | + | chr6_2:69872400-69872419 | Msa0926300:CDS | 40.0% | |
AGCTTGGAAAGAGAAACAAG+AGG | + | chr6_2:69872455-69872474 | Msa0926300:CDS | 40.0% | |
! | ACAAGAGGATCATCTAGTTC+TGG | + | chr6_2:69872470-69872489 | Msa0926300:CDS | 40.0% |
!! | CAAGAGGATCATCTAGTTCT+GGG | + | chr6_2:69872471-69872490 | Msa0926300:CDS | 40.0% |
! | GAAGAGAAGTGAAACGGTTT+TGG | - | chr6_2:69870716-69870735 | None:intergenic | 40.0% |
TATGAAAGAGTGAGAGTGAG+AGG | - | chr6_2:69870824-69870843 | None:intergenic | 40.0% | |
TCTCACTCTTTCATACACGA+AGG | + | chr6_2:69870829-69870848 | Msa0926300:CDS | 40.0% | |
AAATACCTTTGTGAGGGAGA+GGG | - | chr6_2:69870877-69870896 | None:intergenic | 40.0% | |
AAAATACCTTTGTGAGGGAG+AGG | - | chr6_2:69870878-69870897 | None:intergenic | 40.0% | |
TGCTGCTAGATTGTGATTTC+GGG | + | chr6_2:69871111-69871130 | Msa0926300:intron | 40.0% | |
ATTCACGTGCTCCTTCAATT+TGG | + | chr6_2:69871162-69871181 | Msa0926300:intron | 40.0% | |
TTCACGTGCTCCTTCAATTT+GGG | + | chr6_2:69871163-69871182 | Msa0926300:intron | 40.0% | |
!! | GCTCCTTCAATTTGGGTTTT+AGG | + | chr6_2:69871170-69871189 | Msa0926300:intron | 40.0% |
GTTGTCAAAGAGTCATCACA+TGG | - | chr6_2:69871270-69871289 | None:intergenic | 40.0% | |
CACATTCAAAACCATGTTCG+TGG | + | chr6_2:69871464-69871483 | Msa0926300:CDS | 40.0% | |
AATGTTGCCCATTACAGGAT+TGG | - | chr6_2:69871592-69871611 | None:intergenic | 40.0% | |
GACATAATGTTGCCCATTAC+AGG | - | chr6_2:69871597-69871616 | None:intergenic | 40.0% | |
TAATAATCTTTGTGGCAGGG+GGG | - | chr6_2:69871715-69871734 | None:intergenic | 40.0% | |
GAGGGTTAAAGTTTGGAAAG+TGG | + | chr6_2:69871756-69871775 | Msa0926300:intron | 40.0% | |
TGGAAGATTGCAGAGAAAGA+AGG | + | chr6_2:69872317-69872336 | Msa0926300:CDS | 40.0% | |
AATGGAATTGCACCTTGTGT+TGG | + | chr6_2:69872356-69872375 | Msa0926300:CDS | 40.0% | |
TAGCAACAATACTGTCTGCT+AGG | + | chr6_2:69872388-69872407 | Msa0926300:CDS | 40.0% | |
TGTCTGCTAGGAATGTTGTT+GGG | + | chr6_2:69872400-69872419 | Msa0926300:CDS | 40.0% | |
AGCTTGGAAAGAGAAACAAG+AGG | + | chr6_2:69872455-69872474 | Msa0926300:CDS | 40.0% | |
! | ACAAGAGGATCATCTAGTTC+TGG | + | chr6_2:69872470-69872489 | Msa0926300:CDS | 40.0% |
!! | CAAGAGGATCATCTAGTTCT+GGG | + | chr6_2:69872471-69872490 | Msa0926300:CDS | 40.0% |
AAATCTCCCCTCACTCATCA+TGG | + | chr6_2:69870738-69870757 | Msa0926300:exon | 45.0% | |
TGGGTTTCCATGATGAGTGA+GGG | - | chr6_2:69870748-69870767 | None:intergenic | 45.0% | |
AGAGGATTGACAGAGGCAAT+AGG | - | chr6_2:69870806-69870825 | None:intergenic | 45.0% | |
CACATTCAAAACCCTGTTCG+TGG | + | chr6_2:69871427-69871446 | Msa0926300:CDS | 45.0% | |
CACAAGAAAGTCCACGAACA+GGG | - | chr6_2:69871441-69871460 | None:intergenic | 45.0% | |
ACACAAGAAAGTCCACGAAC+AGG | - | chr6_2:69871442-69871461 | None:intergenic | 45.0% | |
ACTGAGAAAGTCCACGAACA+TGG | - | chr6_2:69871478-69871497 | None:intergenic | 45.0% | |
CATTTCTTCCTCTTGCTCCT+TGG | - | chr6_2:69872269-69872288 | None:intergenic | 45.0% | |
! | GATCTTCAAGTAGTGGGAAG+AGG | + | chr6_2:69872288-69872307 | Msa0926300:CDS | 45.0% |
GGTTCCAAAGTTGCAGAGAA+TGG | + | chr6_2:69872338-69872357 | Msa0926300:CDS | 45.0% | |
TTGCACCTTGTGTTGGAAAC+TGG | + | chr6_2:69872363-69872382 | Msa0926300:CDS | 45.0% | |
CTACACCAGTTTCCAACACA+AGG | - | chr6_2:69872371-69872390 | None:intergenic | 45.0% | |
CTGTCTGCTAGGAATGTTGT+TGG | + | chr6_2:69872399-69872418 | Msa0926300:CDS | 45.0% | |
GTCTGCTAGGAATGTTGTTG+GGG | + | chr6_2:69872401-69872420 | Msa0926300:CDS | 45.0% | |
TGCATTATGTGCAGGTAGCT+TGG | + | chr6_2:69872439-69872458 | Msa0926300:CDS | 45.0% | |
AAATCTCCCCTCACTCATCA+TGG | + | chr6_2:69870738-69870757 | Msa0926300:exon | 45.0% | |
TGGGTTTCCATGATGAGTGA+GGG | - | chr6_2:69870748-69870767 | None:intergenic | 45.0% | |
AGAGGATTGACAGAGGCAAT+AGG | - | chr6_2:69870806-69870825 | None:intergenic | 45.0% | |
CACATTCAAAACCCTGTTCG+TGG | + | chr6_2:69871427-69871446 | Msa0926300:CDS | 45.0% | |
CACAAGAAAGTCCACGAACA+GGG | - | chr6_2:69871441-69871460 | None:intergenic | 45.0% | |
ACACAAGAAAGTCCACGAAC+AGG | - | chr6_2:69871442-69871461 | None:intergenic | 45.0% | |
ACTGAGAAAGTCCACGAACA+TGG | - | chr6_2:69871478-69871497 | None:intergenic | 45.0% | |
CATTTCTTCCTCTTGCTCCT+TGG | - | chr6_2:69872269-69872288 | None:intergenic | 45.0% | |
! | GATCTTCAAGTAGTGGGAAG+AGG | + | chr6_2:69872288-69872307 | Msa0926300:CDS | 45.0% |
GGTTCCAAAGTTGCAGAGAA+TGG | + | chr6_2:69872338-69872357 | Msa0926300:CDS | 45.0% | |
TTGCACCTTGTGTTGGAAAC+TGG | + | chr6_2:69872363-69872382 | Msa0926300:CDS | 45.0% | |
CTACACCAGTTTCCAACACA+AGG | - | chr6_2:69872371-69872390 | None:intergenic | 45.0% | |
CTGTCTGCTAGGAATGTTGT+TGG | + | chr6_2:69872399-69872418 | Msa0926300:CDS | 45.0% | |
GTCTGCTAGGAATGTTGTTG+GGG | + | chr6_2:69872401-69872420 | Msa0926300:CDS | 45.0% | |
TGCATTATGTGCAGGTAGCT+TGG | + | chr6_2:69872439-69872458 | Msa0926300:CDS | 45.0% | |
GGGTTTCCATGATGAGTGAG+GGG | - | chr6_2:69870747-69870766 | None:intergenic | 50.0% | |
CTGGGTTTCCATGATGAGTG+AGG | - | chr6_2:69870749-69870768 | None:intergenic | 50.0% | |
ATGGGATGAGGTGAGGTTCT+GGG | - | chr6_2:69870767-69870786 | None:intergenic | 50.0% | |
AGGCAATAGGTTGCAGAGAG+AGG | - | chr6_2:69870793-69870812 | None:intergenic | 50.0% | |
GAGAGTGAGAGGATTGACAG+AGG | - | chr6_2:69870813-69870832 | None:intergenic | 50.0% | |
TAACAGGACCAAGGAGCAAG+AGG | + | chr6_2:69872258-69872277 | Msa0926300:intron | 50.0% | |
! | GTAGTGGGAAGAGGTCTTCT+TGG | + | chr6_2:69872297-69872316 | Msa0926300:CDS | 50.0% |
GGGTTTCCATGATGAGTGAG+GGG | - | chr6_2:69870747-69870766 | None:intergenic | 50.0% | |
CTGGGTTTCCATGATGAGTG+AGG | - | chr6_2:69870749-69870768 | None:intergenic | 50.0% | |
ATGGGATGAGGTGAGGTTCT+GGG | - | chr6_2:69870767-69870786 | None:intergenic | 50.0% | |
AGGCAATAGGTTGCAGAGAG+AGG | - | chr6_2:69870793-69870812 | None:intergenic | 50.0% | |
GAGAGTGAGAGGATTGACAG+AGG | - | chr6_2:69870813-69870832 | None:intergenic | 50.0% | |
TAACAGGACCAAGGAGCAAG+AGG | + | chr6_2:69872258-69872277 | Msa0926300:intron | 50.0% | |
! | GTAGTGGGAAGAGGTCTTCT+TGG | + | chr6_2:69872297-69872316 | Msa0926300:CDS | 50.0% |
GATGGGATGAGGTGAGGTTC+TGG | - | chr6_2:69870768-69870787 | None:intergenic | 55.0% | |
AGAGAGAGGTCGATGGGATG+AGG | - | chr6_2:69870779-69870798 | None:intergenic | 55.0% | |
GGTTGCAGAGAGAGGTCGAT+GGG | - | chr6_2:69870785-69870804 | None:intergenic | 55.0% | |
AGGTTGCAGAGAGAGGTCGA+TGG | - | chr6_2:69870786-69870805 | None:intergenic | 55.0% | |
AGGGCGATGGAGCGATGAAA+GGG | - | chr6_2:69870858-69870877 | None:intergenic | 55.0% | |
GATGGGATGAGGTGAGGTTC+TGG | - | chr6_2:69870768-69870787 | None:intergenic | 55.0% | |
AGAGAGAGGTCGATGGGATG+AGG | - | chr6_2:69870779-69870798 | None:intergenic | 55.0% | |
GGTTGCAGAGAGAGGTCGAT+GGG | - | chr6_2:69870785-69870804 | None:intergenic | 55.0% | |
AGGTTGCAGAGAGAGGTCGA+TGG | - | chr6_2:69870786-69870805 | None:intergenic | 55.0% | |
AGGGCGATGGAGCGATGAAA+GGG | - | chr6_2:69870858-69870877 | None:intergenic | 55.0% | |
GAGGTCGATGGGATGAGGTG+AGG | - | chr6_2:69870774-69870793 | None:intergenic | 60.0% | |
GAGGGCGATGGAGCGATGAA+AGG | - | chr6_2:69870859-69870878 | None:intergenic | 60.0% | |
CTTTGTGAGGGAGAGGGCGA+TGG | - | chr6_2:69870871-69870890 | None:intergenic | 60.0% | |
CATCGCCCTCTCCCTCACAA+AGG | + | chr6_2:69870869-69870888 | Msa0926300:CDS | 60.0% | |
GAGGTCGATGGGATGAGGTG+AGG | - | chr6_2:69870774-69870793 | None:intergenic | 60.0% | |
GAGGGCGATGGAGCGATGAA+AGG | - | chr6_2:69870859-69870878 | None:intergenic | 60.0% | |
CTTTGTGAGGGAGAGGGCGA+TGG | - | chr6_2:69870871-69870890 | None:intergenic | 60.0% | |
CATCGCCCTCTCCCTCACAA+AGG | + | chr6_2:69870869-69870888 | Msa0926300:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 69870648 | 69872598 | 69870648 | ID=Msa0926300;Name=Msa0926300 |
chr6_2 | mRNA | 69870648 | 69872598 | 69870648 | ID=Msa0926300-mRNA-1;Parent=Msa0926300;Name=Msa0926300-mRNA-1;_AED=0.21;_eAED=0.31;_QI=109|0.25|0.6|1|0.25|0.2|5|44|224 |
chr6_2 | exon | 69870648 | 69870890 | 69870648 | ID=Msa0926300-mRNA-1:exon:11378;Parent=Msa0926300-mRNA-1 |
chr6_2 | exon | 69870975 | 69871069 | 69870975 | ID=Msa0926300-mRNA-1:exon:11379;Parent=Msa0926300-mRNA-1 |
chr6_2 | exon | 69871407 | 69871512 | 69871407 | ID=Msa0926300-mRNA-1:exon:11380;Parent=Msa0926300-mRNA-1 |
chr6_2 | exon | 69871907 | 69871955 | 69871907 | ID=Msa0926300-mRNA-1:exon:11381;Parent=Msa0926300-mRNA-1 |
chr6_2 | exon | 69872264 | 69872598 | 69872264 | ID=Msa0926300-mRNA-1:exon:11382;Parent=Msa0926300-mRNA-1 |
chr6_2 | five_prime_UTR | 69870648 | 69870756 | 69870648 | ID=Msa0926300-mRNA-1:five_prime_utr;Parent=Msa0926300-mRNA-1 |
chr6_2 | CDS | 69870757 | 69870890 | 69870757 | ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1 |
chr6_2 | CDS | 69870975 | 69871069 | 69870975 | ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1 |
chr6_2 | CDS | 69871407 | 69871512 | 69871407 | ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1 |
chr6_2 | CDS | 69871907 | 69871955 | 69871907 | ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1 |
chr6_2 | CDS | 69872264 | 69872554 | 69872264 | ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1 |
chr6_2 | three_prime_UTR | 69872555 | 69872598 | 69872555 | ID=Msa0926300-mRNA-1:three_prime_utr;Parent=Msa0926300-mRNA-1 |
Gene Sequence |
Protein sequence |