AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0926300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAAGAACAATTAAAATT+TGG 0.187988 6_2:+69871007 Msa0926300:CDS
GATGGGATGAGGTGAGGTTC+TGG 0.272161 6_2:-69870765 None:intergenic
GAAGAGAAGTGAAACGGTTT+TGG 0.273659 6_2:-69870713 None:intergenic
ACAAGAGGATCATCTAGTTC+TGG 0.312368 6_2:+69872470 Msa0926300:CDS
CATTTCTTCCTCTTGCTCCT+TGG 0.325994 6_2:-69872266 None:intergenic
CACTCGAAACTCATCTATAA+AGG 0.344139 6_2:+69871048 Msa0926300:CDS
GTAGTGGGAAGAGGTCTTCT+TGG 0.384876 6_2:+69872297 Msa0926300:CDS
AATTCCATTCTCTGCAACTT+TGG 0.390172 6_2:-69872342 None:intergenic
TTGCACCTTGTGTTGGAAAC+TGG 0.401274 6_2:+69872363 Msa0926300:CDS
TGCATTATGTGCAGGTAGCT+TGG 0.407949 6_2:+69872439 Msa0926300:CDS
ATGGGATGAGGTGAGGTTCT+GGG 0.418200 6_2:-69870764 None:intergenic
CAAGAGGATCATCTAGTTCT+GGG 0.436940 6_2:+69872471 Msa0926300:CDS
ACACAAGAAAGTCCACGAAC+AGG 0.438225 6_2:-69871439 None:intergenic
TGTCTGCTAGGAATGTTGTT+GGG 0.450777 6_2:+69872400 Msa0926300:CDS
AAGAAATGATCTTCAAGTAG+TGG 0.454455 6_2:+69872281 Msa0926300:CDS
GGTTCCAAAGTTGCAGAGAA+TGG 0.465975 6_2:+69872338 Msa0926300:CDS
CACATTCAAAACCCTGTTCG+TGG 0.467689 6_2:+69871427 Msa0926300:CDS
AGAGGATTGACAGAGGCAAT+AGG 0.481013 6_2:-69870803 None:intergenic
TGGAAGATTGCAGAGAAAGA+AGG 0.486096 6_2:+69872317 Msa0926300:CDS
TATGAAAGAGTGAGAGTGAG+AGG 0.490718 6_2:-69870821 None:intergenic
CACATTCAAAACCATGTTCG+TGG 0.497210 6_2:+69871464 Msa0926300:CDS
TGGTTCAAATTATAAAAGCT+TGG 0.500948 6_2:+69871931 Msa0926300:CDS
AAATCTCCCCTCACTCATCA+TGG 0.506525 6_2:+69870738 Msa0926300:exon
GAGGGCGATGGAGCGATGAA+AGG 0.512177 6_2:-69870856 None:intergenic
CTGTCTGCTAGGAATGTTGT+TGG 0.512759 6_2:+69872399 Msa0926300:CDS
TGGGTTTCCATGATGAGTGA+GGG 0.516210 6_2:-69870745 None:intergenic
GTCTGCTAGGAATGTTGTTG+GGG 0.524420 6_2:+69872401 Msa0926300:CDS
CTGGGTTTCCATGATGAGTG+AGG 0.527422 6_2:-69870746 None:intergenic
ATTTACGAAGAGAAGTGAAA+CGG 0.537781 6_2:-69870719 None:intergenic
TAGCAACAATACTGTCTGCT+AGG 0.542055 6_2:+69872388 Msa0926300:CDS
GATCTTCAAGTAGTGGGAAG+AGG 0.542101 6_2:+69872288 Msa0926300:CDS
AGGGCGATGGAGCGATGAAA+GGG 0.544961 6_2:-69870855 None:intergenic
AAAATACCTTTGTGAGGGAG+AGG 0.545723 6_2:-69870875 None:intergenic
AGAAAGATTGCATTATGTGC+AGG 0.545965 6_2:+69872431 Msa0926300:CDS
AATGGAATTGCACCTTGTGT+TGG 0.547259 6_2:+69872356 Msa0926300:CDS
AGAAATGATCTTCAAGTAGT+GGG 0.557609 6_2:+69872282 Msa0926300:CDS
CTTTGTGAGGGAGAGGGCGA+TGG 0.557738 6_2:-69870868 None:intergenic
AGAGAGAGGTCGATGGGATG+AGG 0.558033 6_2:-69870776 None:intergenic
TAACAGGACCAAGGAGCAAG+AGG 0.582357 6_2:+69872258 Msa0926300:intron
AGGCAATAGGTTGCAGAGAG+AGG 0.587185 6_2:-69870790 None:intergenic
CTACACCAGTTTCCAACACA+AGG 0.592815 6_2:-69872368 None:intergenic
CACAAGAAAGTCCACGAACA+GGG 0.597521 6_2:-69871438 None:intergenic
AAATACCTTTGTGAGGGAGA+GGG 0.598580 6_2:-69870874 None:intergenic
GGTTGCAGAGAGAGGTCGAT+GGG 0.602611 6_2:-69870782 None:intergenic
GGGTTTCCATGATGAGTGAG+GGG 0.628046 6_2:-69870744 None:intergenic
TGATAATTATATGTTTGATG+TGG 0.634378 6_2:+69870963 Msa0926300:intron
TTTACTTTATAACAGGACCA+AGG 0.637117 6_2:+69872249 Msa0926300:intron
ACTGAGAAAGTCCACGAACA+TGG 0.644673 6_2:-69871475 None:intergenic
GAGGTCGATGGGATGAGGTG+AGG 0.647680 6_2:-69870771 None:intergenic
GAGAGTGAGAGGATTGACAG+AGG 0.656785 6_2:-69870810 None:intergenic
AGGTTGCAGAGAGAGGTCGA+TGG 0.664194 6_2:-69870783 None:intergenic
CATCGCCCTCTCCCTCACAA+AGG 0.667019 6_2:+69870869 Msa0926300:CDS
TCTCACTCTTTCATACACGA+AGG 0.696436 6_2:+69870829 Msa0926300:CDS
AGCTTGGAAAGAGAAACAAG+AGG 0.730779 6_2:+69872455 Msa0926300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGAAATAAAATAGA+GGG - chr6_2:69870658-69870677 None:intergenic 10.0%
!!! TTTTTAATGAAATAAAATAG+AGG - chr6_2:69870659-69870678 None:intergenic 10.0%
!! TTAAAAAAAATCCATAAAAA+CGG - chr6_2:69871386-69871405 None:intergenic 10.0%
!!! GATTTTTTTTTTATTGTAAT+AGG + chr6_2:69871885-69871904 Msa0926300:intron 10.0%
!!! TTTTAATGAAATAAAATAGA+GGG - chr6_2:69870658-69870677 None:intergenic 10.0%
!!! TTTTTAATGAAATAAAATAG+AGG - chr6_2:69870659-69870678 None:intergenic 10.0%
!! TTAAAAAAAATCCATAAAAA+CGG - chr6_2:69871386-69871405 None:intergenic 10.0%
!!! GATTTTTTTTTTATTGTAAT+AGG + chr6_2:69871885-69871904 Msa0926300:intron 10.0%
!! GATTAAGAACAATTAAAATT+TGG + chr6_2:69871007-69871026 Msa0926300:CDS 15.0%
!!! TTAATTTTATGATTATGATC+AGG + chr6_2:69871312-69871331 Msa0926300:intron 15.0%
!!! GTTTTTATGGATTTTTTTTA+AGG + chr6_2:69871385-69871404 Msa0926300:intron 15.0%
!!! AGATTATTATTTGATAGTTT+TGG + chr6_2:69871726-69871745 Msa0926300:intron 15.0%
!!! TTAGTATAAGATTTCATTTT+TGG + chr6_2:69872517-69872536 Msa0926300:CDS 15.0%
!! GATTAAGAACAATTAAAATT+TGG + chr6_2:69871007-69871026 Msa0926300:CDS 15.0%
!!! TTAATTTTATGATTATGATC+AGG + chr6_2:69871312-69871331 Msa0926300:intron 15.0%
!!! GTTTTTATGGATTTTTTTTA+AGG + chr6_2:69871385-69871404 Msa0926300:intron 15.0%
!!! AGATTATTATTTGATAGTTT+TGG + chr6_2:69871726-69871745 Msa0926300:intron 15.0%
!!! TTAGTATAAGATTTCATTTT+TGG + chr6_2:69872517-69872536 Msa0926300:CDS 15.0%
!! ATTAAAACAATTCAAAGACA+GGG - chr6_2:69870938-69870957 None:intergenic 20.0%
!! TGATAATTATATGTTTGATG+TGG + chr6_2:69870963-69870982 Msa0926300:intron 20.0%
!!! GTTGATTTCAATGAAAAATT+GGG + chr6_2:69870985-69871004 Msa0926300:CDS 20.0%
!! ACAAATCAATATTCAAAGAT+GGG - chr6_2:69871090-69871109 None:intergenic 20.0%
!! AACAAATCAATATTCAAAGA+TGG - chr6_2:69871091-69871110 None:intergenic 20.0%
!! ATCTGTATAAATCAAATCAA+AGG + chr6_2:69871357-69871376 Msa0926300:intron 20.0%
!! CTATCAAATAATAATCTTTG+TGG - chr6_2:69871723-69871742 None:intergenic 20.0%
!!! TATTCAATTCTCACATTTTA+TGG + chr6_2:69871780-69871799 Msa0926300:intron 20.0%
!!! TATTGTAATAGGTTGTTTTT+AGG + chr6_2:69871896-69871915 Msa0926300:intron 20.0%
!!! ATTGTAATAGGTTGTTTTTA+GGG + chr6_2:69871897-69871916 Msa0926300:intron 20.0%
!!! AAATTGAAGAGCTTTTAAAA+TGG - chr6_2:69871980-69871999 None:intergenic 20.0%
!!! TCAACGAATTGTTTAAAATA+TGG - chr6_2:69872048-69872067 None:intergenic 20.0%
!! ATTGTTAAAAGTAGATTTGT+TGG + chr6_2:69872074-69872093 Msa0926300:intron 20.0%
!!! TTGTTAAAAGTAGATTTGTT+GGG + chr6_2:69872075-69872094 Msa0926300:intron 20.0%
!!! TATCTGTTATTTTGATTTGT+TGG + chr6_2:69872110-69872129 Msa0926300:intron 20.0%
!!! ATCTGTTATTTTGATTTGTT+GGG + chr6_2:69872111-69872130 Msa0926300:intron 20.0%
!! ATGAGAATTTACTTTATAAC+AGG + chr6_2:69872242-69872261 Msa0926300:intron 20.0%
!! ATTAAAACAATTCAAAGACA+GGG - chr6_2:69870938-69870957 None:intergenic 20.0%
!! TGATAATTATATGTTTGATG+TGG + chr6_2:69870963-69870982 Msa0926300:intron 20.0%
!!! GTTGATTTCAATGAAAAATT+GGG + chr6_2:69870985-69871004 Msa0926300:CDS 20.0%
!! ACAAATCAATATTCAAAGAT+GGG - chr6_2:69871090-69871109 None:intergenic 20.0%
!! AACAAATCAATATTCAAAGA+TGG - chr6_2:69871091-69871110 None:intergenic 20.0%
!! ATCTGTATAAATCAAATCAA+AGG + chr6_2:69871357-69871376 Msa0926300:intron 20.0%
!! CTATCAAATAATAATCTTTG+TGG - chr6_2:69871723-69871742 None:intergenic 20.0%
!!! TATTCAATTCTCACATTTTA+TGG + chr6_2:69871780-69871799 Msa0926300:intron 20.0%
!!! TATTGTAATAGGTTGTTTTT+AGG + chr6_2:69871896-69871915 Msa0926300:intron 20.0%
!!! ATTGTAATAGGTTGTTTTTA+GGG + chr6_2:69871897-69871916 Msa0926300:intron 20.0%
!!! AAATTGAAGAGCTTTTAAAA+TGG - chr6_2:69871980-69871999 None:intergenic 20.0%
!!! TCAACGAATTGTTTAAAATA+TGG - chr6_2:69872048-69872067 None:intergenic 20.0%
!! ATTGTTAAAAGTAGATTTGT+TGG + chr6_2:69872074-69872093 Msa0926300:intron 20.0%
!!! TTGTTAAAAGTAGATTTGTT+GGG + chr6_2:69872075-69872094 Msa0926300:intron 20.0%
!!! TATCTGTTATTTTGATTTGT+TGG + chr6_2:69872110-69872129 Msa0926300:intron 20.0%
!!! ATCTGTTATTTTGATTTGTT+GGG + chr6_2:69872111-69872130 Msa0926300:intron 20.0%
!! ATGAGAATTTACTTTATAAC+AGG + chr6_2:69872242-69872261 Msa0926300:intron 20.0%
! GAATAAAAATACCTTTGTGA+GGG - chr6_2:69870883-69870902 None:intergenic 25.0%
! AGAATAAAAATACCTTTGTG+AGG - chr6_2:69870884-69870903 None:intergenic 25.0%
!! TTCTTTTTCCATAGATCAAT+TGG + chr6_2:69870900-69870919 Msa0926300:intron 25.0%
! CATTAAAACAATTCAAAGAC+AGG - chr6_2:69870939-69870958 None:intergenic 25.0%
!! GGTTGATTTCAATGAAAAAT+TGG + chr6_2:69870984-69871003 Msa0926300:CDS 25.0%
! AGTTAGTAAGGATAAATTTC+TGG + chr6_2:69871512-69871531 Msa0926300:intron 25.0%
!! AAGGATAAATTTCTGGATAT+TGG + chr6_2:69871519-69871538 Msa0926300:intron 25.0%
! TAAATCTGAGTCCAAAATAT+GGG + chr6_2:69871673-69871692 Msa0926300:intron 25.0%
! AAATAATAATCTTTGTGGCA+GGG - chr6_2:69871718-69871737 None:intergenic 25.0%
!! TCTCACATTTTATGGTTTTT+TGG + chr6_2:69871788-69871807 Msa0926300:intron 25.0%
!! CTCACATTTTATGGTTTTTT+GGG + chr6_2:69871789-69871808 Msa0926300:intron 25.0%
!!! ATTTTATGGTTTTTTGGGTT+CGG + chr6_2:69871794-69871813 Msa0926300:intron 25.0%
!! TCGTAGTTTTCTGTATTTTT+CGG + chr6_2:69871824-69871843 Msa0926300:intron 25.0%
! AGAAAATCAAGAATGATGAA+CGG - chr6_2:69871863-69871882 None:intergenic 25.0%
! TGGTTCAAATTATAAAAGCT+TGG + chr6_2:69871931-69871950 Msa0926300:CDS 25.0%
! TTGGGTTTATAATGAAAGTT+GGG + chr6_2:69872129-69872148 Msa0926300:intron 25.0%
! GAATAAAAATACCTTTGTGA+GGG - chr6_2:69870883-69870902 None:intergenic 25.0%
! AGAATAAAAATACCTTTGTG+AGG - chr6_2:69870884-69870903 None:intergenic 25.0%
!! TTCTTTTTCCATAGATCAAT+TGG + chr6_2:69870900-69870919 Msa0926300:intron 25.0%
! CATTAAAACAATTCAAAGAC+AGG - chr6_2:69870939-69870958 None:intergenic 25.0%
!! GGTTGATTTCAATGAAAAAT+TGG + chr6_2:69870984-69871003 Msa0926300:CDS 25.0%
! AGTTAGTAAGGATAAATTTC+TGG + chr6_2:69871512-69871531 Msa0926300:intron 25.0%
!! AAGGATAAATTTCTGGATAT+TGG + chr6_2:69871519-69871538 Msa0926300:intron 25.0%
! TAAATCTGAGTCCAAAATAT+GGG + chr6_2:69871673-69871692 Msa0926300:intron 25.0%
! AAATAATAATCTTTGTGGCA+GGG - chr6_2:69871718-69871737 None:intergenic 25.0%
!! TCTCACATTTTATGGTTTTT+TGG + chr6_2:69871788-69871807 Msa0926300:intron 25.0%
!! CTCACATTTTATGGTTTTTT+GGG + chr6_2:69871789-69871808 Msa0926300:intron 25.0%
!!! ATTTTATGGTTTTTTGGGTT+CGG + chr6_2:69871794-69871813 Msa0926300:intron 25.0%
!! TCGTAGTTTTCTGTATTTTT+CGG + chr6_2:69871824-69871843 Msa0926300:intron 25.0%
! AGAAAATCAAGAATGATGAA+CGG - chr6_2:69871863-69871882 None:intergenic 25.0%
! TGGTTCAAATTATAAAAGCT+TGG + chr6_2:69871931-69871950 Msa0926300:CDS 25.0%
! TTGGGTTTATAATGAAAGTT+GGG + chr6_2:69872129-69872148 Msa0926300:intron 25.0%
ATTTACGAAGAGAAGTGAAA+CGG - chr6_2:69870722-69870741 None:intergenic 30.0%
TGATAGAACCAATTGATCTA+TGG - chr6_2:69870911-69870930 None:intergenic 30.0%
!!! GGTTTTAGGGTTTTTGATTT+GGG + chr6_2:69871132-69871151 Msa0926300:intron 30.0%
!! ATCAAAGGAATCCGTTTTTA+TGG + chr6_2:69871372-69871391 Msa0926300:intron 30.0%
!! TCATCTCTCTAAAGTTAGTA+AGG + chr6_2:69871500-69871519 Msa0926300:intron 30.0%
!! ATATTGGTTCTGAGTATGAA+AGG + chr6_2:69871535-69871554 Msa0926300:intron 30.0%
GTAAATCTGAGTCCAAAATA+TGG + chr6_2:69871672-69871691 Msa0926300:intron 30.0%
!!! GCATTTGTTATCCCATATTT+TGG - chr6_2:69871687-69871706 None:intergenic 30.0%
ATATGGGATAACAAATGCTA+AGG + chr6_2:69871689-69871708 Msa0926300:intron 30.0%
AATAATAATCTTTGTGGCAG+GGG - chr6_2:69871717-69871736 None:intergenic 30.0%
CAAATAATAATCTTTGTGGC+AGG - chr6_2:69871719-69871738 None:intergenic 30.0%
!!! TGATAGTTTTGGTAATCTAG+AGG + chr6_2:69871737-69871756 Msa0926300:intron 30.0%
!!! GATAGTTTTGGTAATCTAGA+GGG + chr6_2:69871738-69871757 Msa0926300:intron 30.0%
TAATCTAGAGGGTTAAAGTT+TGG + chr6_2:69871749-69871768 Msa0926300:intron 30.0%
TTAAAATGGACCACACAATA+AGG - chr6_2:69871966-69871985 None:intergenic 30.0%
! CTCTTCAATTTTATTCCTAC+AGG + chr6_2:69871989-69872008 Msa0926300:intron 30.0%
! CAATTTTATTCCTACAGGTA+AGG + chr6_2:69871994-69872013 Msa0926300:intron 30.0%
GTTGGGTTTATAATGAAAGT+TGG + chr6_2:69872128-69872147 Msa0926300:intron 30.0%
CCATTCACAATGTATGAAAA+AGG - chr6_2:69872163-69872182 None:intergenic 30.0%
!! CCTTTTTCATACATTGTGAA+TGG + chr6_2:69872160-69872179 Msa0926300:intron 30.0%
TTTACTTTATAACAGGACCA+AGG + chr6_2:69872249-69872268 Msa0926300:intron 30.0%
AAGAAATGATCTTCAAGTAG+TGG + chr6_2:69872281-69872300 Msa0926300:CDS 30.0%
AGAAATGATCTTCAAGTAGT+GGG + chr6_2:69872282-69872301 Msa0926300:CDS 30.0%
ATTTACGAAGAGAAGTGAAA+CGG - chr6_2:69870722-69870741 None:intergenic 30.0%
TGATAGAACCAATTGATCTA+TGG - chr6_2:69870911-69870930 None:intergenic 30.0%
!!! GGTTTTAGGGTTTTTGATTT+GGG + chr6_2:69871132-69871151 Msa0926300:intron 30.0%
!! ATCAAAGGAATCCGTTTTTA+TGG + chr6_2:69871372-69871391 Msa0926300:intron 30.0%
!! TCATCTCTCTAAAGTTAGTA+AGG + chr6_2:69871500-69871519 Msa0926300:intron 30.0%
!! ATATTGGTTCTGAGTATGAA+AGG + chr6_2:69871535-69871554 Msa0926300:intron 30.0%
GTAAATCTGAGTCCAAAATA+TGG + chr6_2:69871672-69871691 Msa0926300:intron 30.0%
!!! GCATTTGTTATCCCATATTT+TGG - chr6_2:69871687-69871706 None:intergenic 30.0%
ATATGGGATAACAAATGCTA+AGG + chr6_2:69871689-69871708 Msa0926300:intron 30.0%
AATAATAATCTTTGTGGCAG+GGG - chr6_2:69871717-69871736 None:intergenic 30.0%
CAAATAATAATCTTTGTGGC+AGG - chr6_2:69871719-69871738 None:intergenic 30.0%
!!! TGATAGTTTTGGTAATCTAG+AGG + chr6_2:69871737-69871756 Msa0926300:intron 30.0%
!!! GATAGTTTTGGTAATCTAGA+GGG + chr6_2:69871738-69871757 Msa0926300:intron 30.0%
TAATCTAGAGGGTTAAAGTT+TGG + chr6_2:69871749-69871768 Msa0926300:intron 30.0%
TTAAAATGGACCACACAATA+AGG - chr6_2:69871966-69871985 None:intergenic 30.0%
! CTCTTCAATTTTATTCCTAC+AGG + chr6_2:69871989-69872008 Msa0926300:intron 30.0%
! CAATTTTATTCCTACAGGTA+AGG + chr6_2:69871994-69872013 Msa0926300:intron 30.0%
GTTGGGTTTATAATGAAAGT+TGG + chr6_2:69872128-69872147 Msa0926300:intron 30.0%
CCATTCACAATGTATGAAAA+AGG - chr6_2:69872163-69872182 None:intergenic 30.0%
!! CCTTTTTCATACATTGTGAA+TGG + chr6_2:69872160-69872179 Msa0926300:intron 30.0%
TTTACTTTATAACAGGACCA+AGG + chr6_2:69872249-69872268 Msa0926300:intron 30.0%
AAGAAATGATCTTCAAGTAG+TGG + chr6_2:69872281-69872300 Msa0926300:CDS 30.0%
AGAAATGATCTTCAAGTAGT+GGG + chr6_2:69872282-69872301 Msa0926300:CDS 30.0%
CACTCGAAACTCATCTATAA+AGG + chr6_2:69871048-69871067 Msa0926300:CDS 35.0%
TTGCTGCTAGATTGTGATTT+CGG + chr6_2:69871110-69871129 Msa0926300:intron 35.0%
!!! AGATTGTGATTTCGGGTTTT+AGG + chr6_2:69871118-69871137 Msa0926300:intron 35.0%
!!! GATTGTGATTTCGGGTTTTA+GGG + chr6_2:69871119-69871138 Msa0926300:intron 35.0%
!!! GGGTTTTAGGGTTTTTGATT+TGG + chr6_2:69871131-69871150 Msa0926300:intron 35.0%
!! CTCCTTCAATTTGGGTTTTA+GGG + chr6_2:69871171-69871190 Msa0926300:intron 35.0%
AACCCTAAAACCCAAATTGA+AGG - chr6_2:69871176-69871195 None:intergenic 35.0%
AGGTATCTAATCAGTACAGT+AGG + chr6_2:69871332-69871351 Msa0926300:intron 35.0%
GGTATCTAATCAGTACAGTA+GGG + chr6_2:69871333-69871352 Msa0926300:intron 35.0%
GTATCTAATCAGTACAGTAG+GGG + chr6_2:69871334-69871353 Msa0926300:intron 35.0%
TTGTTACTCCAATCCTGTAA+TGG + chr6_2:69871581-69871600 Msa0926300:intron 35.0%
TGTTACTCCAATCCTGTAAT+GGG + chr6_2:69871582-69871601 Msa0926300:intron 35.0%
CTCAGATTTACATACAAGCA+TGG - chr6_2:69871663-69871682 None:intergenic 35.0%
ATAATAATCTTTGTGGCAGG+GGG - chr6_2:69871716-69871735 None:intergenic 35.0%
CAAGAATGATGAACGGATAA+AGG - chr6_2:69871856-69871875 None:intergenic 35.0%
!!! TAGGTTGTTTTTAGGGCAAT+TGG + chr6_2:69871904-69871923 Msa0926300:intron 35.0%
!!! TTTTTAGGGCAATTGGAAAC+TGG + chr6_2:69871911-69871930 Msa0926300:CDS 35.0%
GTTGTGAATACCTTATTGTG+TGG + chr6_2:69871953-69871972 Msa0926300:intron 35.0%
TATCATTGATCCTTACCTGT+AGG - chr6_2:69872007-69872026 None:intergenic 35.0%
AATTCCATTCTCTGCAACTT+TGG - chr6_2:69872345-69872364 None:intergenic 35.0%
AGAAAGATTGCATTATGTGC+AGG + chr6_2:69872431-69872450 Msa0926300:CDS 35.0%
CACTCGAAACTCATCTATAA+AGG + chr6_2:69871048-69871067 Msa0926300:CDS 35.0%
TTGCTGCTAGATTGTGATTT+CGG + chr6_2:69871110-69871129 Msa0926300:intron 35.0%
!!! AGATTGTGATTTCGGGTTTT+AGG + chr6_2:69871118-69871137 Msa0926300:intron 35.0%
!!! GATTGTGATTTCGGGTTTTA+GGG + chr6_2:69871119-69871138 Msa0926300:intron 35.0%
!!! GGGTTTTAGGGTTTTTGATT+TGG + chr6_2:69871131-69871150 Msa0926300:intron 35.0%
!! CTCCTTCAATTTGGGTTTTA+GGG + chr6_2:69871171-69871190 Msa0926300:intron 35.0%
AACCCTAAAACCCAAATTGA+AGG - chr6_2:69871176-69871195 None:intergenic 35.0%
AGGTATCTAATCAGTACAGT+AGG + chr6_2:69871332-69871351 Msa0926300:intron 35.0%
GGTATCTAATCAGTACAGTA+GGG + chr6_2:69871333-69871352 Msa0926300:intron 35.0%
GTATCTAATCAGTACAGTAG+GGG + chr6_2:69871334-69871353 Msa0926300:intron 35.0%
TTGTTACTCCAATCCTGTAA+TGG + chr6_2:69871581-69871600 Msa0926300:intron 35.0%
TGTTACTCCAATCCTGTAAT+GGG + chr6_2:69871582-69871601 Msa0926300:intron 35.0%
CTCAGATTTACATACAAGCA+TGG - chr6_2:69871663-69871682 None:intergenic 35.0%
ATAATAATCTTTGTGGCAGG+GGG - chr6_2:69871716-69871735 None:intergenic 35.0%
CAAGAATGATGAACGGATAA+AGG - chr6_2:69871856-69871875 None:intergenic 35.0%
!!! TAGGTTGTTTTTAGGGCAAT+TGG + chr6_2:69871904-69871923 Msa0926300:intron 35.0%
!!! TTTTTAGGGCAATTGGAAAC+TGG + chr6_2:69871911-69871930 Msa0926300:CDS 35.0%
GTTGTGAATACCTTATTGTG+TGG + chr6_2:69871953-69871972 Msa0926300:intron 35.0%
TATCATTGATCCTTACCTGT+AGG - chr6_2:69872007-69872026 None:intergenic 35.0%
AATTCCATTCTCTGCAACTT+TGG - chr6_2:69872345-69872364 None:intergenic 35.0%
AGAAAGATTGCATTATGTGC+AGG + chr6_2:69872431-69872450 Msa0926300:CDS 35.0%
! GAAGAGAAGTGAAACGGTTT+TGG - chr6_2:69870716-69870735 None:intergenic 40.0%
TATGAAAGAGTGAGAGTGAG+AGG - chr6_2:69870824-69870843 None:intergenic 40.0%
TCTCACTCTTTCATACACGA+AGG + chr6_2:69870829-69870848 Msa0926300:CDS 40.0%
AAATACCTTTGTGAGGGAGA+GGG - chr6_2:69870877-69870896 None:intergenic 40.0%
AAAATACCTTTGTGAGGGAG+AGG - chr6_2:69870878-69870897 None:intergenic 40.0%
TGCTGCTAGATTGTGATTTC+GGG + chr6_2:69871111-69871130 Msa0926300:intron 40.0%
ATTCACGTGCTCCTTCAATT+TGG + chr6_2:69871162-69871181 Msa0926300:intron 40.0%
TTCACGTGCTCCTTCAATTT+GGG + chr6_2:69871163-69871182 Msa0926300:intron 40.0%
!! GCTCCTTCAATTTGGGTTTT+AGG + chr6_2:69871170-69871189 Msa0926300:intron 40.0%
GTTGTCAAAGAGTCATCACA+TGG - chr6_2:69871270-69871289 None:intergenic 40.0%
CACATTCAAAACCATGTTCG+TGG + chr6_2:69871464-69871483 Msa0926300:CDS 40.0%
AATGTTGCCCATTACAGGAT+TGG - chr6_2:69871592-69871611 None:intergenic 40.0%
GACATAATGTTGCCCATTAC+AGG - chr6_2:69871597-69871616 None:intergenic 40.0%
TAATAATCTTTGTGGCAGGG+GGG - chr6_2:69871715-69871734 None:intergenic 40.0%
GAGGGTTAAAGTTTGGAAAG+TGG + chr6_2:69871756-69871775 Msa0926300:intron 40.0%
TGGAAGATTGCAGAGAAAGA+AGG + chr6_2:69872317-69872336 Msa0926300:CDS 40.0%
AATGGAATTGCACCTTGTGT+TGG + chr6_2:69872356-69872375 Msa0926300:CDS 40.0%
TAGCAACAATACTGTCTGCT+AGG + chr6_2:69872388-69872407 Msa0926300:CDS 40.0%
TGTCTGCTAGGAATGTTGTT+GGG + chr6_2:69872400-69872419 Msa0926300:CDS 40.0%
AGCTTGGAAAGAGAAACAAG+AGG + chr6_2:69872455-69872474 Msa0926300:CDS 40.0%
! ACAAGAGGATCATCTAGTTC+TGG + chr6_2:69872470-69872489 Msa0926300:CDS 40.0%
!! CAAGAGGATCATCTAGTTCT+GGG + chr6_2:69872471-69872490 Msa0926300:CDS 40.0%
! GAAGAGAAGTGAAACGGTTT+TGG - chr6_2:69870716-69870735 None:intergenic 40.0%
TATGAAAGAGTGAGAGTGAG+AGG - chr6_2:69870824-69870843 None:intergenic 40.0%
TCTCACTCTTTCATACACGA+AGG + chr6_2:69870829-69870848 Msa0926300:CDS 40.0%
AAATACCTTTGTGAGGGAGA+GGG - chr6_2:69870877-69870896 None:intergenic 40.0%
AAAATACCTTTGTGAGGGAG+AGG - chr6_2:69870878-69870897 None:intergenic 40.0%
TGCTGCTAGATTGTGATTTC+GGG + chr6_2:69871111-69871130 Msa0926300:intron 40.0%
ATTCACGTGCTCCTTCAATT+TGG + chr6_2:69871162-69871181 Msa0926300:intron 40.0%
TTCACGTGCTCCTTCAATTT+GGG + chr6_2:69871163-69871182 Msa0926300:intron 40.0%
!! GCTCCTTCAATTTGGGTTTT+AGG + chr6_2:69871170-69871189 Msa0926300:intron 40.0%
GTTGTCAAAGAGTCATCACA+TGG - chr6_2:69871270-69871289 None:intergenic 40.0%
CACATTCAAAACCATGTTCG+TGG + chr6_2:69871464-69871483 Msa0926300:CDS 40.0%
AATGTTGCCCATTACAGGAT+TGG - chr6_2:69871592-69871611 None:intergenic 40.0%
GACATAATGTTGCCCATTAC+AGG - chr6_2:69871597-69871616 None:intergenic 40.0%
TAATAATCTTTGTGGCAGGG+GGG - chr6_2:69871715-69871734 None:intergenic 40.0%
GAGGGTTAAAGTTTGGAAAG+TGG + chr6_2:69871756-69871775 Msa0926300:intron 40.0%
TGGAAGATTGCAGAGAAAGA+AGG + chr6_2:69872317-69872336 Msa0926300:CDS 40.0%
AATGGAATTGCACCTTGTGT+TGG + chr6_2:69872356-69872375 Msa0926300:CDS 40.0%
TAGCAACAATACTGTCTGCT+AGG + chr6_2:69872388-69872407 Msa0926300:CDS 40.0%
TGTCTGCTAGGAATGTTGTT+GGG + chr6_2:69872400-69872419 Msa0926300:CDS 40.0%
AGCTTGGAAAGAGAAACAAG+AGG + chr6_2:69872455-69872474 Msa0926300:CDS 40.0%
! ACAAGAGGATCATCTAGTTC+TGG + chr6_2:69872470-69872489 Msa0926300:CDS 40.0%
!! CAAGAGGATCATCTAGTTCT+GGG + chr6_2:69872471-69872490 Msa0926300:CDS 40.0%
AAATCTCCCCTCACTCATCA+TGG + chr6_2:69870738-69870757 Msa0926300:exon 45.0%
TGGGTTTCCATGATGAGTGA+GGG - chr6_2:69870748-69870767 None:intergenic 45.0%
AGAGGATTGACAGAGGCAAT+AGG - chr6_2:69870806-69870825 None:intergenic 45.0%
CACATTCAAAACCCTGTTCG+TGG + chr6_2:69871427-69871446 Msa0926300:CDS 45.0%
CACAAGAAAGTCCACGAACA+GGG - chr6_2:69871441-69871460 None:intergenic 45.0%
ACACAAGAAAGTCCACGAAC+AGG - chr6_2:69871442-69871461 None:intergenic 45.0%
ACTGAGAAAGTCCACGAACA+TGG - chr6_2:69871478-69871497 None:intergenic 45.0%
CATTTCTTCCTCTTGCTCCT+TGG - chr6_2:69872269-69872288 None:intergenic 45.0%
! GATCTTCAAGTAGTGGGAAG+AGG + chr6_2:69872288-69872307 Msa0926300:CDS 45.0%
GGTTCCAAAGTTGCAGAGAA+TGG + chr6_2:69872338-69872357 Msa0926300:CDS 45.0%
TTGCACCTTGTGTTGGAAAC+TGG + chr6_2:69872363-69872382 Msa0926300:CDS 45.0%
CTACACCAGTTTCCAACACA+AGG - chr6_2:69872371-69872390 None:intergenic 45.0%
CTGTCTGCTAGGAATGTTGT+TGG + chr6_2:69872399-69872418 Msa0926300:CDS 45.0%
GTCTGCTAGGAATGTTGTTG+GGG + chr6_2:69872401-69872420 Msa0926300:CDS 45.0%
TGCATTATGTGCAGGTAGCT+TGG + chr6_2:69872439-69872458 Msa0926300:CDS 45.0%
AAATCTCCCCTCACTCATCA+TGG + chr6_2:69870738-69870757 Msa0926300:exon 45.0%
TGGGTTTCCATGATGAGTGA+GGG - chr6_2:69870748-69870767 None:intergenic 45.0%
AGAGGATTGACAGAGGCAAT+AGG - chr6_2:69870806-69870825 None:intergenic 45.0%
CACATTCAAAACCCTGTTCG+TGG + chr6_2:69871427-69871446 Msa0926300:CDS 45.0%
CACAAGAAAGTCCACGAACA+GGG - chr6_2:69871441-69871460 None:intergenic 45.0%
ACACAAGAAAGTCCACGAAC+AGG - chr6_2:69871442-69871461 None:intergenic 45.0%
ACTGAGAAAGTCCACGAACA+TGG - chr6_2:69871478-69871497 None:intergenic 45.0%
CATTTCTTCCTCTTGCTCCT+TGG - chr6_2:69872269-69872288 None:intergenic 45.0%
! GATCTTCAAGTAGTGGGAAG+AGG + chr6_2:69872288-69872307 Msa0926300:CDS 45.0%
GGTTCCAAAGTTGCAGAGAA+TGG + chr6_2:69872338-69872357 Msa0926300:CDS 45.0%
TTGCACCTTGTGTTGGAAAC+TGG + chr6_2:69872363-69872382 Msa0926300:CDS 45.0%
CTACACCAGTTTCCAACACA+AGG - chr6_2:69872371-69872390 None:intergenic 45.0%
CTGTCTGCTAGGAATGTTGT+TGG + chr6_2:69872399-69872418 Msa0926300:CDS 45.0%
GTCTGCTAGGAATGTTGTTG+GGG + chr6_2:69872401-69872420 Msa0926300:CDS 45.0%
TGCATTATGTGCAGGTAGCT+TGG + chr6_2:69872439-69872458 Msa0926300:CDS 45.0%
GGGTTTCCATGATGAGTGAG+GGG - chr6_2:69870747-69870766 None:intergenic 50.0%
CTGGGTTTCCATGATGAGTG+AGG - chr6_2:69870749-69870768 None:intergenic 50.0%
ATGGGATGAGGTGAGGTTCT+GGG - chr6_2:69870767-69870786 None:intergenic 50.0%
AGGCAATAGGTTGCAGAGAG+AGG - chr6_2:69870793-69870812 None:intergenic 50.0%
GAGAGTGAGAGGATTGACAG+AGG - chr6_2:69870813-69870832 None:intergenic 50.0%
TAACAGGACCAAGGAGCAAG+AGG + chr6_2:69872258-69872277 Msa0926300:intron 50.0%
! GTAGTGGGAAGAGGTCTTCT+TGG + chr6_2:69872297-69872316 Msa0926300:CDS 50.0%
GGGTTTCCATGATGAGTGAG+GGG - chr6_2:69870747-69870766 None:intergenic 50.0%
CTGGGTTTCCATGATGAGTG+AGG - chr6_2:69870749-69870768 None:intergenic 50.0%
ATGGGATGAGGTGAGGTTCT+GGG - chr6_2:69870767-69870786 None:intergenic 50.0%
AGGCAATAGGTTGCAGAGAG+AGG - chr6_2:69870793-69870812 None:intergenic 50.0%
GAGAGTGAGAGGATTGACAG+AGG - chr6_2:69870813-69870832 None:intergenic 50.0%
TAACAGGACCAAGGAGCAAG+AGG + chr6_2:69872258-69872277 Msa0926300:intron 50.0%
! GTAGTGGGAAGAGGTCTTCT+TGG + chr6_2:69872297-69872316 Msa0926300:CDS 50.0%
GATGGGATGAGGTGAGGTTC+TGG - chr6_2:69870768-69870787 None:intergenic 55.0%
AGAGAGAGGTCGATGGGATG+AGG - chr6_2:69870779-69870798 None:intergenic 55.0%
GGTTGCAGAGAGAGGTCGAT+GGG - chr6_2:69870785-69870804 None:intergenic 55.0%
AGGTTGCAGAGAGAGGTCGA+TGG - chr6_2:69870786-69870805 None:intergenic 55.0%
AGGGCGATGGAGCGATGAAA+GGG - chr6_2:69870858-69870877 None:intergenic 55.0%
GATGGGATGAGGTGAGGTTC+TGG - chr6_2:69870768-69870787 None:intergenic 55.0%
AGAGAGAGGTCGATGGGATG+AGG - chr6_2:69870779-69870798 None:intergenic 55.0%
GGTTGCAGAGAGAGGTCGAT+GGG - chr6_2:69870785-69870804 None:intergenic 55.0%
AGGTTGCAGAGAGAGGTCGA+TGG - chr6_2:69870786-69870805 None:intergenic 55.0%
AGGGCGATGGAGCGATGAAA+GGG - chr6_2:69870858-69870877 None:intergenic 55.0%
GAGGTCGATGGGATGAGGTG+AGG - chr6_2:69870774-69870793 None:intergenic 60.0%
GAGGGCGATGGAGCGATGAA+AGG - chr6_2:69870859-69870878 None:intergenic 60.0%
CTTTGTGAGGGAGAGGGCGA+TGG - chr6_2:69870871-69870890 None:intergenic 60.0%
CATCGCCCTCTCCCTCACAA+AGG + chr6_2:69870869-69870888 Msa0926300:CDS 60.0%
GAGGTCGATGGGATGAGGTG+AGG - chr6_2:69870774-69870793 None:intergenic 60.0%
GAGGGCGATGGAGCGATGAA+AGG - chr6_2:69870859-69870878 None:intergenic 60.0%
CTTTGTGAGGGAGAGGGCGA+TGG - chr6_2:69870871-69870890 None:intergenic 60.0%
CATCGCCCTCTCCCTCACAA+AGG + chr6_2:69870869-69870888 Msa0926300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 69870648 69872598 69870648 ID=Msa0926300;Name=Msa0926300
chr6_2 mRNA 69870648 69872598 69870648 ID=Msa0926300-mRNA-1;Parent=Msa0926300;Name=Msa0926300-mRNA-1;_AED=0.21;_eAED=0.31;_QI=109|0.25|0.6|1|0.25|0.2|5|44|224
chr6_2 exon 69870648 69870890 69870648 ID=Msa0926300-mRNA-1:exon:11378;Parent=Msa0926300-mRNA-1
chr6_2 exon 69870975 69871069 69870975 ID=Msa0926300-mRNA-1:exon:11379;Parent=Msa0926300-mRNA-1
chr6_2 exon 69871407 69871512 69871407 ID=Msa0926300-mRNA-1:exon:11380;Parent=Msa0926300-mRNA-1
chr6_2 exon 69871907 69871955 69871907 ID=Msa0926300-mRNA-1:exon:11381;Parent=Msa0926300-mRNA-1
chr6_2 exon 69872264 69872598 69872264 ID=Msa0926300-mRNA-1:exon:11382;Parent=Msa0926300-mRNA-1
chr6_2 five_prime_UTR 69870648 69870756 69870648 ID=Msa0926300-mRNA-1:five_prime_utr;Parent=Msa0926300-mRNA-1
chr6_2 CDS 69870757 69870890 69870757 ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1
chr6_2 CDS 69870975 69871069 69870975 ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1
chr6_2 CDS 69871407 69871512 69871407 ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1
chr6_2 CDS 69871907 69871955 69871907 ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1
chr6_2 CDS 69872264 69872554 69872264 ID=Msa0926300-mRNA-1:cds;Parent=Msa0926300-mRNA-1
chr6_2 three_prime_UTR 69872555 69872598 69872555 ID=Msa0926300-mRNA-1:three_prime_utr;Parent=Msa0926300-mRNA-1
Gene Sequence

>Msa0926300

ATGGAAACCCAGAACCTCACCTCATCCCATCGACCTCTCTCTGCAACCTATTGCCTCTGTCAATCCTCTCACTCTCACTCTTTCATACACGAAGGAAACCCTTTCATCGCTCCATCGCCCTCTCCCTCACAAAGGTTTGATGTGGTTGATTTCAATGAAAAATTGGGATTAAGAACAATTAAAATTTGGATGCTAAGTCATTCTTCTCACTCGAAACTCATCTATAAAGGATCTCGTATAGACGTGTCACACATTCAAAACCCTGTTCGTGGACTTTCTTGTGTCACACATTCAAAACCATGTTCGTGGACTTTCTCAGTAGTCATCTCTCTAAAGTTGTTTTTAGGGCAATTGGAAACTGGTTCAAATTATAAAAGCTTGGTTGACCAAGGAGCAAGAGGAAGAAATGATCTTCAAGTAGTGGGAAGAGGTCTTCTTGGAAGATTGCAGAGAAAGAAGGTTCCAAAGTTGCAGAGAATGGAATTGCACCTTGTGTTGGAAACTGGTGTAGCAACAATACTGTCTGCTAGGAATGTTGTTGGGGATTATGTAGAAAGATTGCATTATGTGCAGGTAGCTTGGAAAGAGAAACAAGAGGATCATCTAGTTCTGGGAATGTTTAATGTTTTTTGTTCATTTAGTATAAGATTTCATTTTTGGTATTATGAATCTTGA

Protein sequence

>Msa0926300

METQNLTSSHRPLSATYCLCQSSHSHSFIHEGNPFIAPSPSPSQRFDVVDFNEKLGLRTIKIWMLSHSSHSKLIYKGSRIDVSHIQNPVRGLSCVTHSKPCSWTFSVVISLKLFLGQLETGSNYKSLVDQGARGRNDLQVVGRGLLGRLQRKKVPKLQRMELHLVLETGVATILSARNVVGDYVERLHYVQVAWKEKQEDHLVLGMFNVFCSFSIRFHFWYYES*