Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1000790 | Msa1281510 | 0.807538 | 4.814192e-50 | -8.615850e-47 |
Msa0926300 | Msa1000790 | 0.905910 | 2.602513e-80 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 52 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTAAGAACAATTAAAATT+TGG | 0.187988 | 6_4:-84069164 | Msa1000790:CDS |
GAAGAGAAGTGAAACGGTTT+TGG | 0.273659 | 6_4:+84069458 | None:intergenic |
GATGAGATGAGGTGAGGTTC+TGG | 0.300919 | 6_4:+84069406 | None:intergenic |
ACAAGAGGATCATCTAGTTC+TGG | 0.312368 | 6_4:-84067701 | Msa1000790:CDS |
CATTTCTTCCTCTTGCTCCT+TGG | 0.325994 | 6_4:+84067905 | None:intergenic |
CACTCGAAACTCATCTATAA+AGG | 0.344139 | 6_4:-84069123 | Msa1000790:intron |
GTAGTGGGAAGAGGTCTTCT+TGG | 0.384876 | 6_4:-84067874 | Msa1000790:CDS |
AATTCCATTCTCTGCAACTT+TGG | 0.390172 | 6_4:+84067829 | None:intergenic |
TTGCACCTTGTGTTGGAAAC+TGG | 0.401274 | 6_4:-84067808 | Msa1000790:CDS |
TGCATTATGTGCAGGTAGCT+TGG | 0.407949 | 6_4:-84067732 | Msa1000790:CDS |
ATGAGATGAGGTGAGGTTCT+GGG | 0.431044 | 6_4:+84069407 | None:intergenic |
CAAGAGGATCATCTAGTTCT+GGG | 0.436940 | 6_4:-84067700 | Msa1000790:CDS |
ACACAAGAAAGTCCACGAAC+AGG | 0.438225 | 6_4:+84068732 | None:intergenic |
TGTCTGCTAGGAATGTTGTT+GGG | 0.450777 | 6_4:-84067771 | Msa1000790:CDS |
AAGAAATGATCTTCAAGTAG+TGG | 0.454455 | 6_4:-84067890 | Msa1000790:CDS |
GGTTCCAAAGTTGCAGAGAA+TGG | 0.465975 | 6_4:-84067833 | Msa1000790:CDS |
CACATTCAAAACCCTGTTCG+TGG | 0.467689 | 6_4:-84068744 | Msa1000790:CDS |
AGAGGATTGACAGAGGCAAT+AGG | 0.481013 | 6_4:+84069368 | None:intergenic |
TGGAAGATTGCAGAGAAAGA+AGG | 0.486096 | 6_4:-84067854 | Msa1000790:CDS |
TATGAAAGAGTGAGAGTGAG+AGG | 0.490718 | 6_4:+84069350 | None:intergenic |
CACATTCAAAACCATGTTCG+TGG | 0.497210 | 6_4:-84068707 | Msa1000790:CDS |
TGGTTCAAATTATAAAAGCT+TGG | 0.500948 | 6_4:-84068240 | Msa1000790:CDS |
AAATCTCCCCTCACTCATCA+TGG | 0.506525 | 6_4:-84069433 | Msa1000790:exon |
GAGGGCGATGGAGCGATGAA+AGG | 0.512177 | 6_4:+84069315 | None:intergenic |
CTGTCTGCTAGGAATGTTGT+TGG | 0.512759 | 6_4:-84067772 | Msa1000790:CDS |
TGGGTTTCCATGATGAGTGA+GGG | 0.516210 | 6_4:+84069426 | None:intergenic |
GTCTGCTAGGAATGTTGTTG+GGG | 0.524420 | 6_4:-84067770 | Msa1000790:CDS |
CTGGGTTTCCATGATGAGTG+AGG | 0.527422 | 6_4:+84069425 | None:intergenic |
ATTTACGAAGAGAAGTGAAA+CGG | 0.537781 | 6_4:+84069452 | None:intergenic |
TAGCAACAATACTGTCTGCT+AGG | 0.542055 | 6_4:-84067783 | Msa1000790:CDS |
GATCTTCAAGTAGTGGGAAG+AGG | 0.542101 | 6_4:-84067883 | Msa1000790:CDS |
AGGGCGATGGAGCGATGAAA+GGG | 0.544961 | 6_4:+84069316 | None:intergenic |
AAAATACCTTTGTGAGGGAG+AGG | 0.545723 | 6_4:+84069296 | None:intergenic |
AGAAAGATTGCATTATGTGC+AGG | 0.545965 | 6_4:-84067740 | Msa1000790:CDS |
AATGGAATTGCACCTTGTGT+TGG | 0.547259 | 6_4:-84067815 | Msa1000790:CDS |
AGAAATGATCTTCAAGTAGT+GGG | 0.557609 | 6_4:-84067889 | Msa1000790:CDS |
CTTTGTGAGGGAGAGGGCGA+TGG | 0.557738 | 6_4:+84069303 | None:intergenic |
TAACAGGACCAAGGAGCAAG+AGG | 0.582357 | 6_4:-84067913 | Msa1000790:intron |
AGGCAATAGGTTGCAGAGAG+AGG | 0.587185 | 6_4:+84069381 | None:intergenic |
CTACACCAGTTTCCAACACA+AGG | 0.592815 | 6_4:+84067803 | None:intergenic |
CACAAGAAAGTCCACGAACA+GGG | 0.597521 | 6_4:+84068733 | None:intergenic |
AAATACCTTTGTGAGGGAGA+GGG | 0.598580 | 6_4:+84069297 | None:intergenic |
AGAGAGAGGTCGATGAGATG+AGG | 0.617242 | 6_4:+84069395 | None:intergenic |
GGGTTTCCATGATGAGTGAG+GGG | 0.628046 | 6_4:+84069427 | None:intergenic |
TGATAATTATATGTTTGATG+TGG | 0.634378 | 6_4:-84069208 | Msa1000790:intron |
TTTACTTTATAACAGGACCA+AGG | 0.637117 | 6_4:-84067922 | Msa1000790:intron |
ACTGAGAAAGTCCACGAACA+TGG | 0.644673 | 6_4:+84068696 | None:intergenic |
GAGAGTGAGAGGATTGACAG+AGG | 0.656785 | 6_4:+84069361 | None:intergenic |
GAGGTCGATGAGATGAGGTG+AGG | 0.664214 | 6_4:+84069400 | None:intergenic |
CATCGCCCTCTCCCTCACAA+AGG | 0.667019 | 6_4:-84069302 | Msa1000790:intron |
TCTCACTCTTTCATACACGA+AGG | 0.696436 | 6_4:-84069342 | Msa1000790:CDS |
AGCTTGGAAAGAGAAACAAG+AGG | 0.730779 | 6_4:-84067716 | Msa1000790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATGAAATAAAATAGA+GGG | + | chr6_4:84067605-84067624 | None:intergenic | 10.0% |
!!! | TTTTTAATGAAATAAAATAG+AGG | + | chr6_4:84067606-84067625 | None:intergenic | 10.0% |
!! | TTAAAAAAAATCCATAAAAA+CGG | + | chr6_4:84068333-84068352 | None:intergenic | 10.0% |
!!! | GATTTTTTTTTTATTGTAAT+AGG | - | chr6_4:84068832-84068851 | Msa1000790:intron | 10.0% |
!!! | TTTTAATGAAATAAAATAGA+GGG | + | chr6_4:84067605-84067624 | None:intergenic | 10.0% |
!!! | TTTTTAATGAAATAAAATAG+AGG | + | chr6_4:84067606-84067625 | None:intergenic | 10.0% |
!! | TTAAAAAAAATCCATAAAAA+CGG | + | chr6_4:84068333-84068352 | None:intergenic | 10.0% |
!!! | GATTTTTTTTTTATTGTAAT+AGG | - | chr6_4:84068832-84068851 | Msa1000790:intron | 10.0% |
!! | GATTAAGAACAATTAAAATT+TGG | - | chr6_4:84067954-84067973 | Msa1000790:intron | 15.0% |
!!! | TTAATTTTATGATTATGATC+AGG | - | chr6_4:84068259-84068278 | Msa1000790:CDS | 15.0% |
!!! | GTTTTTATGGATTTTTTTTA+AGG | - | chr6_4:84068332-84068351 | Msa1000790:intron | 15.0% |
!!! | AGATTATTATTTGATAGTTT+TGG | - | chr6_4:84068673-84068692 | Msa1000790:intron | 15.0% |
!!! | TTAGTATAAGATTTCATTTT+TGG | - | chr6_4:84069464-84069483 | Msa1000790:five_prime_UTR | 15.0% |
!! | GATTAAGAACAATTAAAATT+TGG | - | chr6_4:84067954-84067973 | Msa1000790:intron | 15.0% |
!!! | TTAATTTTATGATTATGATC+AGG | - | chr6_4:84068259-84068278 | Msa1000790:CDS | 15.0% |
!!! | GTTTTTATGGATTTTTTTTA+AGG | - | chr6_4:84068332-84068351 | Msa1000790:intron | 15.0% |
!!! | AGATTATTATTTGATAGTTT+TGG | - | chr6_4:84068673-84068692 | Msa1000790:intron | 15.0% |
!!! | TTAGTATAAGATTTCATTTT+TGG | - | chr6_4:84069464-84069483 | Msa1000790:five_prime_UTR | 15.0% |
!! | ATTAAAACAATTCAAAGACA+GGG | + | chr6_4:84067885-84067904 | None:intergenic | 20.0% |
!! | TGATAATTATATGTTTGATG+TGG | - | chr6_4:84067910-84067929 | Msa1000790:CDS | 20.0% |
!!! | GTTGATTTCAATGAAAAATT+GGG | - | chr6_4:84067932-84067951 | Msa1000790:intron | 20.0% |
!! | ACAAATCAATATTCAAAGAT+GGG | + | chr6_4:84068037-84068056 | None:intergenic | 20.0% |
!! | AACAAATCAATATTCAAAGA+TGG | + | chr6_4:84068038-84068057 | None:intergenic | 20.0% |
!! | ATCTGTATAAATCAAATCAA+AGG | - | chr6_4:84068304-84068323 | Msa1000790:intron | 20.0% |
!! | CTATCAAATAATAATCTTTG+TGG | + | chr6_4:84068670-84068689 | None:intergenic | 20.0% |
!!! | TATTCAATTCTCACATTTTA+TGG | - | chr6_4:84068727-84068746 | Msa1000790:CDS | 20.0% |
!!! | TATTGTAATAGGTTGTTTTT+AGG | - | chr6_4:84068843-84068862 | Msa1000790:intron | 20.0% |
!!! | ATTGTAATAGGTTGTTTTTA+GGG | - | chr6_4:84068844-84068863 | Msa1000790:intron | 20.0% |
!!! | AAATTGAAGAGCTTTTAAAA+TGG | + | chr6_4:84068927-84068946 | None:intergenic | 20.0% |
!!! | TCAACGAATTGTTTAAAATA+TGG | + | chr6_4:84068995-84069014 | None:intergenic | 20.0% |
!! | ATTGTTAAAAGTAGATTTGT+TGG | - | chr6_4:84069021-84069040 | Msa1000790:intron | 20.0% |
!!! | TTGTTAAAAGTAGATTTGTT+GGG | - | chr6_4:84069022-84069041 | Msa1000790:intron | 20.0% |
!!! | TATCTGTTATTTTGATTTGT+TGG | - | chr6_4:84069057-84069076 | Msa1000790:intron | 20.0% |
!!! | ATCTGTTATTTTGATTTGTT+GGG | - | chr6_4:84069058-84069077 | Msa1000790:intron | 20.0% |
!! | ATGAGAATTTACTTTATAAC+AGG | - | chr6_4:84069189-84069208 | Msa1000790:CDS | 20.0% |
!! | ATTAAAACAATTCAAAGACA+GGG | + | chr6_4:84067885-84067904 | None:intergenic | 20.0% |
!! | TGATAATTATATGTTTGATG+TGG | - | chr6_4:84067910-84067929 | Msa1000790:CDS | 20.0% |
!!! | GTTGATTTCAATGAAAAATT+GGG | - | chr6_4:84067932-84067951 | Msa1000790:intron | 20.0% |
!! | ACAAATCAATATTCAAAGAT+GGG | + | chr6_4:84068037-84068056 | None:intergenic | 20.0% |
!! | AACAAATCAATATTCAAAGA+TGG | + | chr6_4:84068038-84068057 | None:intergenic | 20.0% |
!! | ATCTGTATAAATCAAATCAA+AGG | - | chr6_4:84068304-84068323 | Msa1000790:intron | 20.0% |
!! | CTATCAAATAATAATCTTTG+TGG | + | chr6_4:84068670-84068689 | None:intergenic | 20.0% |
!!! | TATTCAATTCTCACATTTTA+TGG | - | chr6_4:84068727-84068746 | Msa1000790:CDS | 20.0% |
!!! | TATTGTAATAGGTTGTTTTT+AGG | - | chr6_4:84068843-84068862 | Msa1000790:intron | 20.0% |
!!! | ATTGTAATAGGTTGTTTTTA+GGG | - | chr6_4:84068844-84068863 | Msa1000790:intron | 20.0% |
!!! | AAATTGAAGAGCTTTTAAAA+TGG | + | chr6_4:84068927-84068946 | None:intergenic | 20.0% |
!!! | TCAACGAATTGTTTAAAATA+TGG | + | chr6_4:84068995-84069014 | None:intergenic | 20.0% |
!! | ATTGTTAAAAGTAGATTTGT+TGG | - | chr6_4:84069021-84069040 | Msa1000790:intron | 20.0% |
!!! | TTGTTAAAAGTAGATTTGTT+GGG | - | chr6_4:84069022-84069041 | Msa1000790:intron | 20.0% |
!!! | TATCTGTTATTTTGATTTGT+TGG | - | chr6_4:84069057-84069076 | Msa1000790:intron | 20.0% |
!!! | ATCTGTTATTTTGATTTGTT+GGG | - | chr6_4:84069058-84069077 | Msa1000790:intron | 20.0% |
!! | ATGAGAATTTACTTTATAAC+AGG | - | chr6_4:84069189-84069208 | Msa1000790:CDS | 20.0% |
! | GAATAAAAATACCTTTGTGA+GGG | + | chr6_4:84067830-84067849 | None:intergenic | 25.0% |
! | AGAATAAAAATACCTTTGTG+AGG | + | chr6_4:84067831-84067850 | None:intergenic | 25.0% |
!! | TTCTTTTTCCATAGATCAAT+TGG | - | chr6_4:84067847-84067866 | Msa1000790:CDS | 25.0% |
! | CATTAAAACAATTCAAAGAC+AGG | + | chr6_4:84067886-84067905 | None:intergenic | 25.0% |
!! | GGTTGATTTCAATGAAAAAT+TGG | - | chr6_4:84067931-84067950 | Msa1000790:intron | 25.0% |
! | AGTTAGTAAGGATAAATTTC+TGG | - | chr6_4:84068459-84068478 | Msa1000790:intron | 25.0% |
!! | AAGGATAAATTTCTGGATAT+TGG | - | chr6_4:84068466-84068485 | Msa1000790:intron | 25.0% |
! | TAAATCTGAGTCCAAAATAT+GGG | - | chr6_4:84068620-84068639 | Msa1000790:intron | 25.0% |
! | AAATAATAATCTTTGTGGCA+GGG | + | chr6_4:84068665-84068684 | None:intergenic | 25.0% |
!! | TCTCACATTTTATGGTTTTT+TGG | - | chr6_4:84068735-84068754 | Msa1000790:CDS | 25.0% |
!! | CTCACATTTTATGGTTTTTT+GGG | - | chr6_4:84068736-84068755 | Msa1000790:CDS | 25.0% |
!!! | ATTTTATGGTTTTTTGGGTT+CGG | - | chr6_4:84068741-84068760 | Msa1000790:CDS | 25.0% |
!! | TCGTAGTTTTCTGTATTTTT+CGG | - | chr6_4:84068771-84068790 | Msa1000790:intron | 25.0% |
! | AGAAAATCAAGAATGATGAA+CGG | + | chr6_4:84068810-84068829 | None:intergenic | 25.0% |
! | TGGTTCAAATTATAAAAGCT+TGG | - | chr6_4:84068878-84068897 | Msa1000790:intron | 25.0% |
! | TTGGGTTTATAATGAAAGTT+GGG | - | chr6_4:84069076-84069095 | Msa1000790:intron | 25.0% |
! | GAATAAAAATACCTTTGTGA+GGG | + | chr6_4:84067830-84067849 | None:intergenic | 25.0% |
! | AGAATAAAAATACCTTTGTG+AGG | + | chr6_4:84067831-84067850 | None:intergenic | 25.0% |
!! | TTCTTTTTCCATAGATCAAT+TGG | - | chr6_4:84067847-84067866 | Msa1000790:CDS | 25.0% |
! | CATTAAAACAATTCAAAGAC+AGG | + | chr6_4:84067886-84067905 | None:intergenic | 25.0% |
!! | GGTTGATTTCAATGAAAAAT+TGG | - | chr6_4:84067931-84067950 | Msa1000790:intron | 25.0% |
! | AGTTAGTAAGGATAAATTTC+TGG | - | chr6_4:84068459-84068478 | Msa1000790:intron | 25.0% |
!! | AAGGATAAATTTCTGGATAT+TGG | - | chr6_4:84068466-84068485 | Msa1000790:intron | 25.0% |
! | TAAATCTGAGTCCAAAATAT+GGG | - | chr6_4:84068620-84068639 | Msa1000790:intron | 25.0% |
! | AAATAATAATCTTTGTGGCA+GGG | + | chr6_4:84068665-84068684 | None:intergenic | 25.0% |
!! | TCTCACATTTTATGGTTTTT+TGG | - | chr6_4:84068735-84068754 | Msa1000790:CDS | 25.0% |
!! | CTCACATTTTATGGTTTTTT+GGG | - | chr6_4:84068736-84068755 | Msa1000790:CDS | 25.0% |
!!! | ATTTTATGGTTTTTTGGGTT+CGG | - | chr6_4:84068741-84068760 | Msa1000790:CDS | 25.0% |
!! | TCGTAGTTTTCTGTATTTTT+CGG | - | chr6_4:84068771-84068790 | Msa1000790:intron | 25.0% |
! | AGAAAATCAAGAATGATGAA+CGG | + | chr6_4:84068810-84068829 | None:intergenic | 25.0% |
! | TGGTTCAAATTATAAAAGCT+TGG | - | chr6_4:84068878-84068897 | Msa1000790:intron | 25.0% |
! | TTGGGTTTATAATGAAAGTT+GGG | - | chr6_4:84069076-84069095 | Msa1000790:intron | 25.0% |
ATTTACGAAGAGAAGTGAAA+CGG | + | chr6_4:84067669-84067688 | None:intergenic | 30.0% | |
TGATAGAACCAATTGATCTA+TGG | + | chr6_4:84067858-84067877 | None:intergenic | 30.0% | |
!!! | GGTTTTAGGGTTTTTGATTT+GGG | - | chr6_4:84068079-84068098 | Msa1000790:intron | 30.0% |
!! | ATCAAAGGAATCCGTTTTTA+TGG | - | chr6_4:84068319-84068338 | Msa1000790:intron | 30.0% |
!! | TCATCTCTCTAAAGTTAGTA+AGG | - | chr6_4:84068447-84068466 | Msa1000790:intron | 30.0% |
!! | ATATTGGTTCTGAGTATGAA+AGG | - | chr6_4:84068482-84068501 | Msa1000790:intron | 30.0% |
GTAAATCTGAGTCCAAAATA+TGG | - | chr6_4:84068619-84068638 | Msa1000790:intron | 30.0% | |
!!! | GCATTTGTTATCCCATATTT+TGG | + | chr6_4:84068634-84068653 | None:intergenic | 30.0% |
ATATGGGATAACAAATGCTA+AGG | - | chr6_4:84068636-84068655 | Msa1000790:intron | 30.0% | |
AATAATAATCTTTGTGGCAG+GGG | + | chr6_4:84068664-84068683 | None:intergenic | 30.0% | |
CAAATAATAATCTTTGTGGC+AGG | + | chr6_4:84068666-84068685 | None:intergenic | 30.0% | |
!!! | TGATAGTTTTGGTAATCTAG+AGG | - | chr6_4:84068684-84068703 | Msa1000790:CDS | 30.0% |
!!! | GATAGTTTTGGTAATCTAGA+GGG | - | chr6_4:84068685-84068704 | Msa1000790:CDS | 30.0% |
TAATCTAGAGGGTTAAAGTT+TGG | - | chr6_4:84068696-84068715 | Msa1000790:CDS | 30.0% | |
TTAAAATGGACCACACAATA+AGG | + | chr6_4:84068913-84068932 | None:intergenic | 30.0% | |
! | CTCTTCAATTTTATTCCTAC+AGG | - | chr6_4:84068936-84068955 | Msa1000790:intron | 30.0% |
! | CAATTTTATTCCTACAGGTA+AGG | - | chr6_4:84068941-84068960 | Msa1000790:intron | 30.0% |
GTTGGGTTTATAATGAAAGT+TGG | - | chr6_4:84069075-84069094 | Msa1000790:intron | 30.0% | |
CCATTCACAATGTATGAAAA+AGG | + | chr6_4:84069110-84069129 | None:intergenic | 30.0% | |
!! | CCTTTTTCATACATTGTGAA+TGG | - | chr6_4:84069107-84069126 | Msa1000790:intron | 30.0% |
TTTACTTTATAACAGGACCA+AGG | - | chr6_4:84069196-84069215 | Msa1000790:CDS | 30.0% | |
AAGAAATGATCTTCAAGTAG+TGG | - | chr6_4:84069228-84069247 | Msa1000790:intron | 30.0% | |
AGAAATGATCTTCAAGTAGT+GGG | - | chr6_4:84069229-84069248 | Msa1000790:intron | 30.0% | |
ATTTACGAAGAGAAGTGAAA+CGG | + | chr6_4:84067669-84067688 | None:intergenic | 30.0% | |
TGATAGAACCAATTGATCTA+TGG | + | chr6_4:84067858-84067877 | None:intergenic | 30.0% | |
!!! | GGTTTTAGGGTTTTTGATTT+GGG | - | chr6_4:84068079-84068098 | Msa1000790:intron | 30.0% |
!! | ATCAAAGGAATCCGTTTTTA+TGG | - | chr6_4:84068319-84068338 | Msa1000790:intron | 30.0% |
!! | TCATCTCTCTAAAGTTAGTA+AGG | - | chr6_4:84068447-84068466 | Msa1000790:intron | 30.0% |
!! | ATATTGGTTCTGAGTATGAA+AGG | - | chr6_4:84068482-84068501 | Msa1000790:intron | 30.0% |
GTAAATCTGAGTCCAAAATA+TGG | - | chr6_4:84068619-84068638 | Msa1000790:intron | 30.0% | |
!!! | GCATTTGTTATCCCATATTT+TGG | + | chr6_4:84068634-84068653 | None:intergenic | 30.0% |
ATATGGGATAACAAATGCTA+AGG | - | chr6_4:84068636-84068655 | Msa1000790:intron | 30.0% | |
AATAATAATCTTTGTGGCAG+GGG | + | chr6_4:84068664-84068683 | None:intergenic | 30.0% | |
CAAATAATAATCTTTGTGGC+AGG | + | chr6_4:84068666-84068685 | None:intergenic | 30.0% | |
!!! | TGATAGTTTTGGTAATCTAG+AGG | - | chr6_4:84068684-84068703 | Msa1000790:CDS | 30.0% |
!!! | GATAGTTTTGGTAATCTAGA+GGG | - | chr6_4:84068685-84068704 | Msa1000790:CDS | 30.0% |
TAATCTAGAGGGTTAAAGTT+TGG | - | chr6_4:84068696-84068715 | Msa1000790:CDS | 30.0% | |
TTAAAATGGACCACACAATA+AGG | + | chr6_4:84068913-84068932 | None:intergenic | 30.0% | |
! | CTCTTCAATTTTATTCCTAC+AGG | - | chr6_4:84068936-84068955 | Msa1000790:intron | 30.0% |
! | CAATTTTATTCCTACAGGTA+AGG | - | chr6_4:84068941-84068960 | Msa1000790:intron | 30.0% |
GTTGGGTTTATAATGAAAGT+TGG | - | chr6_4:84069075-84069094 | Msa1000790:intron | 30.0% | |
CCATTCACAATGTATGAAAA+AGG | + | chr6_4:84069110-84069129 | None:intergenic | 30.0% | |
!! | CCTTTTTCATACATTGTGAA+TGG | - | chr6_4:84069107-84069126 | Msa1000790:intron | 30.0% |
TTTACTTTATAACAGGACCA+AGG | - | chr6_4:84069196-84069215 | Msa1000790:CDS | 30.0% | |
AAGAAATGATCTTCAAGTAG+TGG | - | chr6_4:84069228-84069247 | Msa1000790:intron | 30.0% | |
AGAAATGATCTTCAAGTAGT+GGG | - | chr6_4:84069229-84069248 | Msa1000790:intron | 30.0% | |
CACTCGAAACTCATCTATAA+AGG | - | chr6_4:84067995-84068014 | Msa1000790:intron | 35.0% | |
TTGCTGCTAGATTGTGATTT+CGG | - | chr6_4:84068057-84068076 | Msa1000790:intron | 35.0% | |
!!! | AGATTGTGATTTCGGGTTTT+AGG | - | chr6_4:84068065-84068084 | Msa1000790:intron | 35.0% |
!!! | GATTGTGATTTCGGGTTTTA+GGG | - | chr6_4:84068066-84068085 | Msa1000790:intron | 35.0% |
!!! | GGGTTTTAGGGTTTTTGATT+TGG | - | chr6_4:84068078-84068097 | Msa1000790:intron | 35.0% |
!! | CTCCTTCAATTTGGGTTTTA+GGG | - | chr6_4:84068118-84068137 | Msa1000790:intron | 35.0% |
AACCCTAAAACCCAAATTGA+AGG | + | chr6_4:84068123-84068142 | None:intergenic | 35.0% | |
AGGTATCTAATCAGTACAGT+AGG | - | chr6_4:84068279-84068298 | Msa1000790:intron | 35.0% | |
GGTATCTAATCAGTACAGTA+GGG | - | chr6_4:84068280-84068299 | Msa1000790:intron | 35.0% | |
GTATCTAATCAGTACAGTAG+GGG | - | chr6_4:84068281-84068300 | Msa1000790:intron | 35.0% | |
TTGTTACTCCAATCCTGTAA+TGG | - | chr6_4:84068528-84068547 | Msa1000790:intron | 35.0% | |
TGTTACTCCAATCCTGTAAT+GGG | - | chr6_4:84068529-84068548 | Msa1000790:intron | 35.0% | |
CTCAGATTTACATACAAGCA+TGG | + | chr6_4:84068610-84068629 | None:intergenic | 35.0% | |
ATAATAATCTTTGTGGCAGG+GGG | + | chr6_4:84068663-84068682 | None:intergenic | 35.0% | |
CAAGAATGATGAACGGATAA+AGG | + | chr6_4:84068803-84068822 | None:intergenic | 35.0% | |
!!! | TAGGTTGTTTTTAGGGCAAT+TGG | - | chr6_4:84068851-84068870 | Msa1000790:intron | 35.0% |
!!! | TTTTTAGGGCAATTGGAAAC+TGG | - | chr6_4:84068858-84068877 | Msa1000790:intron | 35.0% |
GTTGTGAATACCTTATTGTG+TGG | - | chr6_4:84068900-84068919 | Msa1000790:intron | 35.0% | |
TATCATTGATCCTTACCTGT+AGG | + | chr6_4:84068954-84068973 | None:intergenic | 35.0% | |
AATTCCATTCTCTGCAACTT+TGG | + | chr6_4:84069292-84069311 | None:intergenic | 35.0% | |
AGAAAGATTGCATTATGTGC+AGG | - | chr6_4:84069378-84069397 | Msa1000790:CDS | 35.0% | |
CACTCGAAACTCATCTATAA+AGG | - | chr6_4:84067995-84068014 | Msa1000790:intron | 35.0% | |
TTGCTGCTAGATTGTGATTT+CGG | - | chr6_4:84068057-84068076 | Msa1000790:intron | 35.0% | |
!!! | AGATTGTGATTTCGGGTTTT+AGG | - | chr6_4:84068065-84068084 | Msa1000790:intron | 35.0% |
!!! | GATTGTGATTTCGGGTTTTA+GGG | - | chr6_4:84068066-84068085 | Msa1000790:intron | 35.0% |
!!! | GGGTTTTAGGGTTTTTGATT+TGG | - | chr6_4:84068078-84068097 | Msa1000790:intron | 35.0% |
!! | CTCCTTCAATTTGGGTTTTA+GGG | - | chr6_4:84068118-84068137 | Msa1000790:intron | 35.0% |
AACCCTAAAACCCAAATTGA+AGG | + | chr6_4:84068123-84068142 | None:intergenic | 35.0% | |
AGGTATCTAATCAGTACAGT+AGG | - | chr6_4:84068279-84068298 | Msa1000790:intron | 35.0% | |
GGTATCTAATCAGTACAGTA+GGG | - | chr6_4:84068280-84068299 | Msa1000790:intron | 35.0% | |
GTATCTAATCAGTACAGTAG+GGG | - | chr6_4:84068281-84068300 | Msa1000790:intron | 35.0% | |
TTGTTACTCCAATCCTGTAA+TGG | - | chr6_4:84068528-84068547 | Msa1000790:intron | 35.0% | |
TGTTACTCCAATCCTGTAAT+GGG | - | chr6_4:84068529-84068548 | Msa1000790:intron | 35.0% | |
CTCAGATTTACATACAAGCA+TGG | + | chr6_4:84068610-84068629 | None:intergenic | 35.0% | |
ATAATAATCTTTGTGGCAGG+GGG | + | chr6_4:84068663-84068682 | None:intergenic | 35.0% | |
CAAGAATGATGAACGGATAA+AGG | + | chr6_4:84068803-84068822 | None:intergenic | 35.0% | |
!!! | TAGGTTGTTTTTAGGGCAAT+TGG | - | chr6_4:84068851-84068870 | Msa1000790:intron | 35.0% |
!!! | TTTTTAGGGCAATTGGAAAC+TGG | - | chr6_4:84068858-84068877 | Msa1000790:intron | 35.0% |
GTTGTGAATACCTTATTGTG+TGG | - | chr6_4:84068900-84068919 | Msa1000790:intron | 35.0% | |
TATCATTGATCCTTACCTGT+AGG | + | chr6_4:84068954-84068973 | None:intergenic | 35.0% | |
AATTCCATTCTCTGCAACTT+TGG | + | chr6_4:84069292-84069311 | None:intergenic | 35.0% | |
AGAAAGATTGCATTATGTGC+AGG | - | chr6_4:84069378-84069397 | Msa1000790:CDS | 35.0% | |
! | GAAGAGAAGTGAAACGGTTT+TGG | + | chr6_4:84067663-84067682 | None:intergenic | 40.0% |
TATGAAAGAGTGAGAGTGAG+AGG | + | chr6_4:84067771-84067790 | None:intergenic | 40.0% | |
TCTCACTCTTTCATACACGA+AGG | - | chr6_4:84067776-84067795 | Msa1000790:CDS | 40.0% | |
AAATACCTTTGTGAGGGAGA+GGG | + | chr6_4:84067824-84067843 | None:intergenic | 40.0% | |
AAAATACCTTTGTGAGGGAG+AGG | + | chr6_4:84067825-84067844 | None:intergenic | 40.0% | |
TGCTGCTAGATTGTGATTTC+GGG | - | chr6_4:84068058-84068077 | Msa1000790:intron | 40.0% | |
ATTCACGTGCTCCTTCAATT+TGG | - | chr6_4:84068109-84068128 | Msa1000790:intron | 40.0% | |
TTCACGTGCTCCTTCAATTT+GGG | - | chr6_4:84068110-84068129 | Msa1000790:intron | 40.0% | |
!! | GCTCCTTCAATTTGGGTTTT+AGG | - | chr6_4:84068117-84068136 | Msa1000790:intron | 40.0% |
CACATTCAAAACCATGTTCG+TGG | - | chr6_4:84068411-84068430 | Msa1000790:intron | 40.0% | |
AATGTTGCCCATTACAGGAT+TGG | + | chr6_4:84068539-84068558 | None:intergenic | 40.0% | |
GACATAATGTTGCCCATTAC+AGG | + | chr6_4:84068544-84068563 | None:intergenic | 40.0% | |
TAATAATCTTTGTGGCAGGG+GGG | + | chr6_4:84068662-84068681 | None:intergenic | 40.0% | |
GAGGGTTAAAGTTTGGAAAG+TGG | - | chr6_4:84068703-84068722 | Msa1000790:CDS | 40.0% | |
TGGAAGATTGCAGAGAAAGA+AGG | - | chr6_4:84069264-84069283 | Msa1000790:intron | 40.0% | |
AATGGAATTGCACCTTGTGT+TGG | - | chr6_4:84069303-84069322 | Msa1000790:CDS | 40.0% | |
TAGCAACAATACTGTCTGCT+AGG | - | chr6_4:84069335-84069354 | Msa1000790:CDS | 40.0% | |
TGTCTGCTAGGAATGTTGTT+GGG | - | chr6_4:84069347-84069366 | Msa1000790:CDS | 40.0% | |
AGCTTGGAAAGAGAAACAAG+AGG | - | chr6_4:84069402-84069421 | Msa1000790:CDS | 40.0% | |
! | ACAAGAGGATCATCTAGTTC+TGG | - | chr6_4:84069417-84069436 | Msa1000790:CDS | 40.0% |
!! | CAAGAGGATCATCTAGTTCT+GGG | - | chr6_4:84069418-84069437 | Msa1000790:exon | 40.0% |
! | GAAGAGAAGTGAAACGGTTT+TGG | + | chr6_4:84067663-84067682 | None:intergenic | 40.0% |
TATGAAAGAGTGAGAGTGAG+AGG | + | chr6_4:84067771-84067790 | None:intergenic | 40.0% | |
TCTCACTCTTTCATACACGA+AGG | - | chr6_4:84067776-84067795 | Msa1000790:CDS | 40.0% | |
AAATACCTTTGTGAGGGAGA+GGG | + | chr6_4:84067824-84067843 | None:intergenic | 40.0% | |
AAAATACCTTTGTGAGGGAG+AGG | + | chr6_4:84067825-84067844 | None:intergenic | 40.0% | |
TGCTGCTAGATTGTGATTTC+GGG | - | chr6_4:84068058-84068077 | Msa1000790:intron | 40.0% | |
ATTCACGTGCTCCTTCAATT+TGG | - | chr6_4:84068109-84068128 | Msa1000790:intron | 40.0% | |
TTCACGTGCTCCTTCAATTT+GGG | - | chr6_4:84068110-84068129 | Msa1000790:intron | 40.0% | |
!! | GCTCCTTCAATTTGGGTTTT+AGG | - | chr6_4:84068117-84068136 | Msa1000790:intron | 40.0% |
CACATTCAAAACCATGTTCG+TGG | - | chr6_4:84068411-84068430 | Msa1000790:intron | 40.0% | |
AATGTTGCCCATTACAGGAT+TGG | + | chr6_4:84068539-84068558 | None:intergenic | 40.0% | |
GACATAATGTTGCCCATTAC+AGG | + | chr6_4:84068544-84068563 | None:intergenic | 40.0% | |
TAATAATCTTTGTGGCAGGG+GGG | + | chr6_4:84068662-84068681 | None:intergenic | 40.0% | |
GAGGGTTAAAGTTTGGAAAG+TGG | - | chr6_4:84068703-84068722 | Msa1000790:CDS | 40.0% | |
TGGAAGATTGCAGAGAAAGA+AGG | - | chr6_4:84069264-84069283 | Msa1000790:intron | 40.0% | |
AATGGAATTGCACCTTGTGT+TGG | - | chr6_4:84069303-84069322 | Msa1000790:CDS | 40.0% | |
TAGCAACAATACTGTCTGCT+AGG | - | chr6_4:84069335-84069354 | Msa1000790:CDS | 40.0% | |
TGTCTGCTAGGAATGTTGTT+GGG | - | chr6_4:84069347-84069366 | Msa1000790:CDS | 40.0% | |
AGCTTGGAAAGAGAAACAAG+AGG | - | chr6_4:84069402-84069421 | Msa1000790:CDS | 40.0% | |
! | ACAAGAGGATCATCTAGTTC+TGG | - | chr6_4:84069417-84069436 | Msa1000790:CDS | 40.0% |
!! | CAAGAGGATCATCTAGTTCT+GGG | - | chr6_4:84069418-84069437 | Msa1000790:exon | 40.0% |
AAATCTCCCCTCACTCATCA+TGG | - | chr6_4:84067685-84067704 | Msa1000790:CDS | 45.0% | |
TGGGTTTCCATGATGAGTGA+GGG | + | chr6_4:84067695-84067714 | None:intergenic | 45.0% | |
ATGAGATGAGGTGAGGTTCT+GGG | + | chr6_4:84067714-84067733 | None:intergenic | 45.0% | |
AGAGGATTGACAGAGGCAAT+AGG | + | chr6_4:84067753-84067772 | None:intergenic | 45.0% | |
GTTGTCAAAGAGTCGTCACA+TGG | + | chr6_4:84068217-84068236 | None:intergenic | 45.0% | |
CACATTCAAAACCCTGTTCG+TGG | - | chr6_4:84068374-84068393 | Msa1000790:intron | 45.0% | |
CACAAGAAAGTCCACGAACA+GGG | + | chr6_4:84068388-84068407 | None:intergenic | 45.0% | |
ACACAAGAAAGTCCACGAAC+AGG | + | chr6_4:84068389-84068408 | None:intergenic | 45.0% | |
ACTGAGAAAGTCCACGAACA+TGG | + | chr6_4:84068425-84068444 | None:intergenic | 45.0% | |
CATTTCTTCCTCTTGCTCCT+TGG | + | chr6_4:84069216-84069235 | None:intergenic | 45.0% | |
! | GATCTTCAAGTAGTGGGAAG+AGG | - | chr6_4:84069235-84069254 | Msa1000790:intron | 45.0% |
GGTTCCAAAGTTGCAGAGAA+TGG | - | chr6_4:84069285-84069304 | Msa1000790:intron | 45.0% | |
TTGCACCTTGTGTTGGAAAC+TGG | - | chr6_4:84069310-84069329 | Msa1000790:CDS | 45.0% | |
CTACACCAGTTTCCAACACA+AGG | + | chr6_4:84069318-84069337 | None:intergenic | 45.0% | |
CTGTCTGCTAGGAATGTTGT+TGG | - | chr6_4:84069346-84069365 | Msa1000790:CDS | 45.0% | |
GTCTGCTAGGAATGTTGTTG+GGG | - | chr6_4:84069348-84069367 | Msa1000790:CDS | 45.0% | |
TGCATTATGTGCAGGTAGCT+TGG | - | chr6_4:84069386-84069405 | Msa1000790:CDS | 45.0% | |
AAATCTCCCCTCACTCATCA+TGG | - | chr6_4:84067685-84067704 | Msa1000790:CDS | 45.0% | |
TGGGTTTCCATGATGAGTGA+GGG | + | chr6_4:84067695-84067714 | None:intergenic | 45.0% | |
ATGAGATGAGGTGAGGTTCT+GGG | + | chr6_4:84067714-84067733 | None:intergenic | 45.0% | |
AGAGGATTGACAGAGGCAAT+AGG | + | chr6_4:84067753-84067772 | None:intergenic | 45.0% | |
GTTGTCAAAGAGTCGTCACA+TGG | + | chr6_4:84068217-84068236 | None:intergenic | 45.0% | |
CACATTCAAAACCCTGTTCG+TGG | - | chr6_4:84068374-84068393 | Msa1000790:intron | 45.0% | |
CACAAGAAAGTCCACGAACA+GGG | + | chr6_4:84068388-84068407 | None:intergenic | 45.0% | |
ACACAAGAAAGTCCACGAAC+AGG | + | chr6_4:84068389-84068408 | None:intergenic | 45.0% | |
ACTGAGAAAGTCCACGAACA+TGG | + | chr6_4:84068425-84068444 | None:intergenic | 45.0% | |
CATTTCTTCCTCTTGCTCCT+TGG | + | chr6_4:84069216-84069235 | None:intergenic | 45.0% | |
! | GATCTTCAAGTAGTGGGAAG+AGG | - | chr6_4:84069235-84069254 | Msa1000790:intron | 45.0% |
GGTTCCAAAGTTGCAGAGAA+TGG | - | chr6_4:84069285-84069304 | Msa1000790:intron | 45.0% | |
TTGCACCTTGTGTTGGAAAC+TGG | - | chr6_4:84069310-84069329 | Msa1000790:CDS | 45.0% | |
CTACACCAGTTTCCAACACA+AGG | + | chr6_4:84069318-84069337 | None:intergenic | 45.0% | |
CTGTCTGCTAGGAATGTTGT+TGG | - | chr6_4:84069346-84069365 | Msa1000790:CDS | 45.0% | |
GTCTGCTAGGAATGTTGTTG+GGG | - | chr6_4:84069348-84069367 | Msa1000790:CDS | 45.0% | |
TGCATTATGTGCAGGTAGCT+TGG | - | chr6_4:84069386-84069405 | Msa1000790:CDS | 45.0% | |
GGGTTTCCATGATGAGTGAG+GGG | + | chr6_4:84067694-84067713 | None:intergenic | 50.0% | |
CTGGGTTTCCATGATGAGTG+AGG | + | chr6_4:84067696-84067715 | None:intergenic | 50.0% | |
GATGAGATGAGGTGAGGTTC+TGG | + | chr6_4:84067715-84067734 | None:intergenic | 50.0% | |
AGAGAGAGGTCGATGAGATG+AGG | + | chr6_4:84067726-84067745 | None:intergenic | 50.0% | |
AGGCAATAGGTTGCAGAGAG+AGG | + | chr6_4:84067740-84067759 | None:intergenic | 50.0% | |
GAGAGTGAGAGGATTGACAG+AGG | + | chr6_4:84067760-84067779 | None:intergenic | 50.0% | |
TAACAGGACCAAGGAGCAAG+AGG | - | chr6_4:84069205-84069224 | Msa1000790:intron | 50.0% | |
! | GTAGTGGGAAGAGGTCTTCT+TGG | - | chr6_4:84069244-84069263 | Msa1000790:intron | 50.0% |
GGGTTTCCATGATGAGTGAG+GGG | + | chr6_4:84067694-84067713 | None:intergenic | 50.0% | |
CTGGGTTTCCATGATGAGTG+AGG | + | chr6_4:84067696-84067715 | None:intergenic | 50.0% | |
GATGAGATGAGGTGAGGTTC+TGG | + | chr6_4:84067715-84067734 | None:intergenic | 50.0% | |
AGAGAGAGGTCGATGAGATG+AGG | + | chr6_4:84067726-84067745 | None:intergenic | 50.0% | |
AGGCAATAGGTTGCAGAGAG+AGG | + | chr6_4:84067740-84067759 | None:intergenic | 50.0% | |
GAGAGTGAGAGGATTGACAG+AGG | + | chr6_4:84067760-84067779 | None:intergenic | 50.0% | |
TAACAGGACCAAGGAGCAAG+AGG | - | chr6_4:84069205-84069224 | Msa1000790:intron | 50.0% | |
! | GTAGTGGGAAGAGGTCTTCT+TGG | - | chr6_4:84069244-84069263 | Msa1000790:intron | 50.0% |
GAGGTCGATGAGATGAGGTG+AGG | + | chr6_4:84067721-84067740 | None:intergenic | 55.0% | |
AGGGCGATGGAGCGATGAAA+GGG | + | chr6_4:84067805-84067824 | None:intergenic | 55.0% | |
GAGGTCGATGAGATGAGGTG+AGG | + | chr6_4:84067721-84067740 | None:intergenic | 55.0% | |
AGGGCGATGGAGCGATGAAA+GGG | + | chr6_4:84067805-84067824 | None:intergenic | 55.0% | |
GAGGGCGATGGAGCGATGAA+AGG | + | chr6_4:84067806-84067825 | None:intergenic | 60.0% | |
CTTTGTGAGGGAGAGGGCGA+TGG | + | chr6_4:84067818-84067837 | None:intergenic | 60.0% | |
CATCGCCCTCTCCCTCACAA+AGG | - | chr6_4:84067816-84067835 | Msa1000790:CDS | 60.0% | |
GAGGGCGATGGAGCGATGAA+AGG | + | chr6_4:84067806-84067825 | None:intergenic | 60.0% | |
CTTTGTGAGGGAGAGGGCGA+TGG | + | chr6_4:84067818-84067837 | None:intergenic | 60.0% | |
CATCGCCCTCTCCCTCACAA+AGG | - | chr6_4:84067816-84067835 | Msa1000790:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 84067595 | 84069545 | 84067595 | ID=Msa1000790;Name=Msa1000790 |
chr6_4 | mRNA | 84067595 | 84069545 | 84067595 | ID=Msa1000790-mRNA-1;Parent=Msa1000790;Name=Msa1000790-mRNA-1;_AED=0.21;_eAED=0.31;_QI=109|0.25|0.6|1|0.25|0.2|5|44|224 |
chr6_4 | exon | 84067595 | 84067929 | 84067595 | ID=Msa1000790-mRNA-1:exon:16329;Parent=Msa1000790-mRNA-1 |
chr6_4 | exon | 84068238 | 84068286 | 84068238 | ID=Msa1000790-mRNA-1:exon:16328;Parent=Msa1000790-mRNA-1 |
chr6_4 | exon | 84068681 | 84068786 | 84068681 | ID=Msa1000790-mRNA-1:exon:16327;Parent=Msa1000790-mRNA-1 |
chr6_4 | exon | 84069124 | 84069218 | 84069124 | ID=Msa1000790-mRNA-1:exon:16326;Parent=Msa1000790-mRNA-1 |
chr6_4 | exon | 84069303 | 84069545 | 84069303 | ID=Msa1000790-mRNA-1:exon:16325;Parent=Msa1000790-mRNA-1 |
chr6_4 | five_prime_UTR | 84069437 | 84069545 | 84069437 | ID=Msa1000790-mRNA-1:five_prime_utr;Parent=Msa1000790-mRNA-1 |
chr6_4 | CDS | 84069303 | 84069436 | 84069303 | ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1 |
chr6_4 | CDS | 84069124 | 84069218 | 84069124 | ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1 |
chr6_4 | CDS | 84068681 | 84068786 | 84068681 | ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1 |
chr6_4 | CDS | 84068238 | 84068286 | 84068238 | ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1 |
chr6_4 | CDS | 84067639 | 84067929 | 84067639 | ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1 |
chr6_4 | three_prime_UTR | 84067595 | 84067638 | 84067595 | ID=Msa1000790-mRNA-1:three_prime_utr;Parent=Msa1000790-mRNA-1 |
Gene Sequence |
Protein sequence |