AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1000790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 52 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAAGAACAATTAAAATT+TGG 0.187988 6_4:-84069164 Msa1000790:CDS
GAAGAGAAGTGAAACGGTTT+TGG 0.273659 6_4:+84069458 None:intergenic
GATGAGATGAGGTGAGGTTC+TGG 0.300919 6_4:+84069406 None:intergenic
ACAAGAGGATCATCTAGTTC+TGG 0.312368 6_4:-84067701 Msa1000790:CDS
CATTTCTTCCTCTTGCTCCT+TGG 0.325994 6_4:+84067905 None:intergenic
CACTCGAAACTCATCTATAA+AGG 0.344139 6_4:-84069123 Msa1000790:intron
GTAGTGGGAAGAGGTCTTCT+TGG 0.384876 6_4:-84067874 Msa1000790:CDS
AATTCCATTCTCTGCAACTT+TGG 0.390172 6_4:+84067829 None:intergenic
TTGCACCTTGTGTTGGAAAC+TGG 0.401274 6_4:-84067808 Msa1000790:CDS
TGCATTATGTGCAGGTAGCT+TGG 0.407949 6_4:-84067732 Msa1000790:CDS
ATGAGATGAGGTGAGGTTCT+GGG 0.431044 6_4:+84069407 None:intergenic
CAAGAGGATCATCTAGTTCT+GGG 0.436940 6_4:-84067700 Msa1000790:CDS
ACACAAGAAAGTCCACGAAC+AGG 0.438225 6_4:+84068732 None:intergenic
TGTCTGCTAGGAATGTTGTT+GGG 0.450777 6_4:-84067771 Msa1000790:CDS
AAGAAATGATCTTCAAGTAG+TGG 0.454455 6_4:-84067890 Msa1000790:CDS
GGTTCCAAAGTTGCAGAGAA+TGG 0.465975 6_4:-84067833 Msa1000790:CDS
CACATTCAAAACCCTGTTCG+TGG 0.467689 6_4:-84068744 Msa1000790:CDS
AGAGGATTGACAGAGGCAAT+AGG 0.481013 6_4:+84069368 None:intergenic
TGGAAGATTGCAGAGAAAGA+AGG 0.486096 6_4:-84067854 Msa1000790:CDS
TATGAAAGAGTGAGAGTGAG+AGG 0.490718 6_4:+84069350 None:intergenic
CACATTCAAAACCATGTTCG+TGG 0.497210 6_4:-84068707 Msa1000790:CDS
TGGTTCAAATTATAAAAGCT+TGG 0.500948 6_4:-84068240 Msa1000790:CDS
AAATCTCCCCTCACTCATCA+TGG 0.506525 6_4:-84069433 Msa1000790:exon
GAGGGCGATGGAGCGATGAA+AGG 0.512177 6_4:+84069315 None:intergenic
CTGTCTGCTAGGAATGTTGT+TGG 0.512759 6_4:-84067772 Msa1000790:CDS
TGGGTTTCCATGATGAGTGA+GGG 0.516210 6_4:+84069426 None:intergenic
GTCTGCTAGGAATGTTGTTG+GGG 0.524420 6_4:-84067770 Msa1000790:CDS
CTGGGTTTCCATGATGAGTG+AGG 0.527422 6_4:+84069425 None:intergenic
ATTTACGAAGAGAAGTGAAA+CGG 0.537781 6_4:+84069452 None:intergenic
TAGCAACAATACTGTCTGCT+AGG 0.542055 6_4:-84067783 Msa1000790:CDS
GATCTTCAAGTAGTGGGAAG+AGG 0.542101 6_4:-84067883 Msa1000790:CDS
AGGGCGATGGAGCGATGAAA+GGG 0.544961 6_4:+84069316 None:intergenic
AAAATACCTTTGTGAGGGAG+AGG 0.545723 6_4:+84069296 None:intergenic
AGAAAGATTGCATTATGTGC+AGG 0.545965 6_4:-84067740 Msa1000790:CDS
AATGGAATTGCACCTTGTGT+TGG 0.547259 6_4:-84067815 Msa1000790:CDS
AGAAATGATCTTCAAGTAGT+GGG 0.557609 6_4:-84067889 Msa1000790:CDS
CTTTGTGAGGGAGAGGGCGA+TGG 0.557738 6_4:+84069303 None:intergenic
TAACAGGACCAAGGAGCAAG+AGG 0.582357 6_4:-84067913 Msa1000790:intron
AGGCAATAGGTTGCAGAGAG+AGG 0.587185 6_4:+84069381 None:intergenic
CTACACCAGTTTCCAACACA+AGG 0.592815 6_4:+84067803 None:intergenic
CACAAGAAAGTCCACGAACA+GGG 0.597521 6_4:+84068733 None:intergenic
AAATACCTTTGTGAGGGAGA+GGG 0.598580 6_4:+84069297 None:intergenic
AGAGAGAGGTCGATGAGATG+AGG 0.617242 6_4:+84069395 None:intergenic
GGGTTTCCATGATGAGTGAG+GGG 0.628046 6_4:+84069427 None:intergenic
TGATAATTATATGTTTGATG+TGG 0.634378 6_4:-84069208 Msa1000790:intron
TTTACTTTATAACAGGACCA+AGG 0.637117 6_4:-84067922 Msa1000790:intron
ACTGAGAAAGTCCACGAACA+TGG 0.644673 6_4:+84068696 None:intergenic
GAGAGTGAGAGGATTGACAG+AGG 0.656785 6_4:+84069361 None:intergenic
GAGGTCGATGAGATGAGGTG+AGG 0.664214 6_4:+84069400 None:intergenic
CATCGCCCTCTCCCTCACAA+AGG 0.667019 6_4:-84069302 Msa1000790:intron
TCTCACTCTTTCATACACGA+AGG 0.696436 6_4:-84069342 Msa1000790:CDS
AGCTTGGAAAGAGAAACAAG+AGG 0.730779 6_4:-84067716 Msa1000790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGAAATAAAATAGA+GGG + chr6_4:84067605-84067624 None:intergenic 10.0%
!!! TTTTTAATGAAATAAAATAG+AGG + chr6_4:84067606-84067625 None:intergenic 10.0%
!! TTAAAAAAAATCCATAAAAA+CGG + chr6_4:84068333-84068352 None:intergenic 10.0%
!!! GATTTTTTTTTTATTGTAAT+AGG - chr6_4:84068832-84068851 Msa1000790:intron 10.0%
!!! TTTTAATGAAATAAAATAGA+GGG + chr6_4:84067605-84067624 None:intergenic 10.0%
!!! TTTTTAATGAAATAAAATAG+AGG + chr6_4:84067606-84067625 None:intergenic 10.0%
!! TTAAAAAAAATCCATAAAAA+CGG + chr6_4:84068333-84068352 None:intergenic 10.0%
!!! GATTTTTTTTTTATTGTAAT+AGG - chr6_4:84068832-84068851 Msa1000790:intron 10.0%
!! GATTAAGAACAATTAAAATT+TGG - chr6_4:84067954-84067973 Msa1000790:intron 15.0%
!!! TTAATTTTATGATTATGATC+AGG - chr6_4:84068259-84068278 Msa1000790:CDS 15.0%
!!! GTTTTTATGGATTTTTTTTA+AGG - chr6_4:84068332-84068351 Msa1000790:intron 15.0%
!!! AGATTATTATTTGATAGTTT+TGG - chr6_4:84068673-84068692 Msa1000790:intron 15.0%
!!! TTAGTATAAGATTTCATTTT+TGG - chr6_4:84069464-84069483 Msa1000790:five_prime_UTR 15.0%
!! GATTAAGAACAATTAAAATT+TGG - chr6_4:84067954-84067973 Msa1000790:intron 15.0%
!!! TTAATTTTATGATTATGATC+AGG - chr6_4:84068259-84068278 Msa1000790:CDS 15.0%
!!! GTTTTTATGGATTTTTTTTA+AGG - chr6_4:84068332-84068351 Msa1000790:intron 15.0%
!!! AGATTATTATTTGATAGTTT+TGG - chr6_4:84068673-84068692 Msa1000790:intron 15.0%
!!! TTAGTATAAGATTTCATTTT+TGG - chr6_4:84069464-84069483 Msa1000790:five_prime_UTR 15.0%
!! ATTAAAACAATTCAAAGACA+GGG + chr6_4:84067885-84067904 None:intergenic 20.0%
!! TGATAATTATATGTTTGATG+TGG - chr6_4:84067910-84067929 Msa1000790:CDS 20.0%
!!! GTTGATTTCAATGAAAAATT+GGG - chr6_4:84067932-84067951 Msa1000790:intron 20.0%
!! ACAAATCAATATTCAAAGAT+GGG + chr6_4:84068037-84068056 None:intergenic 20.0%
!! AACAAATCAATATTCAAAGA+TGG + chr6_4:84068038-84068057 None:intergenic 20.0%
!! ATCTGTATAAATCAAATCAA+AGG - chr6_4:84068304-84068323 Msa1000790:intron 20.0%
!! CTATCAAATAATAATCTTTG+TGG + chr6_4:84068670-84068689 None:intergenic 20.0%
!!! TATTCAATTCTCACATTTTA+TGG - chr6_4:84068727-84068746 Msa1000790:CDS 20.0%
!!! TATTGTAATAGGTTGTTTTT+AGG - chr6_4:84068843-84068862 Msa1000790:intron 20.0%
!!! ATTGTAATAGGTTGTTTTTA+GGG - chr6_4:84068844-84068863 Msa1000790:intron 20.0%
!!! AAATTGAAGAGCTTTTAAAA+TGG + chr6_4:84068927-84068946 None:intergenic 20.0%
!!! TCAACGAATTGTTTAAAATA+TGG + chr6_4:84068995-84069014 None:intergenic 20.0%
!! ATTGTTAAAAGTAGATTTGT+TGG - chr6_4:84069021-84069040 Msa1000790:intron 20.0%
!!! TTGTTAAAAGTAGATTTGTT+GGG - chr6_4:84069022-84069041 Msa1000790:intron 20.0%
!!! TATCTGTTATTTTGATTTGT+TGG - chr6_4:84069057-84069076 Msa1000790:intron 20.0%
!!! ATCTGTTATTTTGATTTGTT+GGG - chr6_4:84069058-84069077 Msa1000790:intron 20.0%
!! ATGAGAATTTACTTTATAAC+AGG - chr6_4:84069189-84069208 Msa1000790:CDS 20.0%
!! ATTAAAACAATTCAAAGACA+GGG + chr6_4:84067885-84067904 None:intergenic 20.0%
!! TGATAATTATATGTTTGATG+TGG - chr6_4:84067910-84067929 Msa1000790:CDS 20.0%
!!! GTTGATTTCAATGAAAAATT+GGG - chr6_4:84067932-84067951 Msa1000790:intron 20.0%
!! ACAAATCAATATTCAAAGAT+GGG + chr6_4:84068037-84068056 None:intergenic 20.0%
!! AACAAATCAATATTCAAAGA+TGG + chr6_4:84068038-84068057 None:intergenic 20.0%
!! ATCTGTATAAATCAAATCAA+AGG - chr6_4:84068304-84068323 Msa1000790:intron 20.0%
!! CTATCAAATAATAATCTTTG+TGG + chr6_4:84068670-84068689 None:intergenic 20.0%
!!! TATTCAATTCTCACATTTTA+TGG - chr6_4:84068727-84068746 Msa1000790:CDS 20.0%
!!! TATTGTAATAGGTTGTTTTT+AGG - chr6_4:84068843-84068862 Msa1000790:intron 20.0%
!!! ATTGTAATAGGTTGTTTTTA+GGG - chr6_4:84068844-84068863 Msa1000790:intron 20.0%
!!! AAATTGAAGAGCTTTTAAAA+TGG + chr6_4:84068927-84068946 None:intergenic 20.0%
!!! TCAACGAATTGTTTAAAATA+TGG + chr6_4:84068995-84069014 None:intergenic 20.0%
!! ATTGTTAAAAGTAGATTTGT+TGG - chr6_4:84069021-84069040 Msa1000790:intron 20.0%
!!! TTGTTAAAAGTAGATTTGTT+GGG - chr6_4:84069022-84069041 Msa1000790:intron 20.0%
!!! TATCTGTTATTTTGATTTGT+TGG - chr6_4:84069057-84069076 Msa1000790:intron 20.0%
!!! ATCTGTTATTTTGATTTGTT+GGG - chr6_4:84069058-84069077 Msa1000790:intron 20.0%
!! ATGAGAATTTACTTTATAAC+AGG - chr6_4:84069189-84069208 Msa1000790:CDS 20.0%
! GAATAAAAATACCTTTGTGA+GGG + chr6_4:84067830-84067849 None:intergenic 25.0%
! AGAATAAAAATACCTTTGTG+AGG + chr6_4:84067831-84067850 None:intergenic 25.0%
!! TTCTTTTTCCATAGATCAAT+TGG - chr6_4:84067847-84067866 Msa1000790:CDS 25.0%
! CATTAAAACAATTCAAAGAC+AGG + chr6_4:84067886-84067905 None:intergenic 25.0%
!! GGTTGATTTCAATGAAAAAT+TGG - chr6_4:84067931-84067950 Msa1000790:intron 25.0%
! AGTTAGTAAGGATAAATTTC+TGG - chr6_4:84068459-84068478 Msa1000790:intron 25.0%
!! AAGGATAAATTTCTGGATAT+TGG - chr6_4:84068466-84068485 Msa1000790:intron 25.0%
! TAAATCTGAGTCCAAAATAT+GGG - chr6_4:84068620-84068639 Msa1000790:intron 25.0%
! AAATAATAATCTTTGTGGCA+GGG + chr6_4:84068665-84068684 None:intergenic 25.0%
!! TCTCACATTTTATGGTTTTT+TGG - chr6_4:84068735-84068754 Msa1000790:CDS 25.0%
!! CTCACATTTTATGGTTTTTT+GGG - chr6_4:84068736-84068755 Msa1000790:CDS 25.0%
!!! ATTTTATGGTTTTTTGGGTT+CGG - chr6_4:84068741-84068760 Msa1000790:CDS 25.0%
!! TCGTAGTTTTCTGTATTTTT+CGG - chr6_4:84068771-84068790 Msa1000790:intron 25.0%
! AGAAAATCAAGAATGATGAA+CGG + chr6_4:84068810-84068829 None:intergenic 25.0%
! TGGTTCAAATTATAAAAGCT+TGG - chr6_4:84068878-84068897 Msa1000790:intron 25.0%
! TTGGGTTTATAATGAAAGTT+GGG - chr6_4:84069076-84069095 Msa1000790:intron 25.0%
! GAATAAAAATACCTTTGTGA+GGG + chr6_4:84067830-84067849 None:intergenic 25.0%
! AGAATAAAAATACCTTTGTG+AGG + chr6_4:84067831-84067850 None:intergenic 25.0%
!! TTCTTTTTCCATAGATCAAT+TGG - chr6_4:84067847-84067866 Msa1000790:CDS 25.0%
! CATTAAAACAATTCAAAGAC+AGG + chr6_4:84067886-84067905 None:intergenic 25.0%
!! GGTTGATTTCAATGAAAAAT+TGG - chr6_4:84067931-84067950 Msa1000790:intron 25.0%
! AGTTAGTAAGGATAAATTTC+TGG - chr6_4:84068459-84068478 Msa1000790:intron 25.0%
!! AAGGATAAATTTCTGGATAT+TGG - chr6_4:84068466-84068485 Msa1000790:intron 25.0%
! TAAATCTGAGTCCAAAATAT+GGG - chr6_4:84068620-84068639 Msa1000790:intron 25.0%
! AAATAATAATCTTTGTGGCA+GGG + chr6_4:84068665-84068684 None:intergenic 25.0%
!! TCTCACATTTTATGGTTTTT+TGG - chr6_4:84068735-84068754 Msa1000790:CDS 25.0%
!! CTCACATTTTATGGTTTTTT+GGG - chr6_4:84068736-84068755 Msa1000790:CDS 25.0%
!!! ATTTTATGGTTTTTTGGGTT+CGG - chr6_4:84068741-84068760 Msa1000790:CDS 25.0%
!! TCGTAGTTTTCTGTATTTTT+CGG - chr6_4:84068771-84068790 Msa1000790:intron 25.0%
! AGAAAATCAAGAATGATGAA+CGG + chr6_4:84068810-84068829 None:intergenic 25.0%
! TGGTTCAAATTATAAAAGCT+TGG - chr6_4:84068878-84068897 Msa1000790:intron 25.0%
! TTGGGTTTATAATGAAAGTT+GGG - chr6_4:84069076-84069095 Msa1000790:intron 25.0%
ATTTACGAAGAGAAGTGAAA+CGG + chr6_4:84067669-84067688 None:intergenic 30.0%
TGATAGAACCAATTGATCTA+TGG + chr6_4:84067858-84067877 None:intergenic 30.0%
!!! GGTTTTAGGGTTTTTGATTT+GGG - chr6_4:84068079-84068098 Msa1000790:intron 30.0%
!! ATCAAAGGAATCCGTTTTTA+TGG - chr6_4:84068319-84068338 Msa1000790:intron 30.0%
!! TCATCTCTCTAAAGTTAGTA+AGG - chr6_4:84068447-84068466 Msa1000790:intron 30.0%
!! ATATTGGTTCTGAGTATGAA+AGG - chr6_4:84068482-84068501 Msa1000790:intron 30.0%
GTAAATCTGAGTCCAAAATA+TGG - chr6_4:84068619-84068638 Msa1000790:intron 30.0%
!!! GCATTTGTTATCCCATATTT+TGG + chr6_4:84068634-84068653 None:intergenic 30.0%
ATATGGGATAACAAATGCTA+AGG - chr6_4:84068636-84068655 Msa1000790:intron 30.0%
AATAATAATCTTTGTGGCAG+GGG + chr6_4:84068664-84068683 None:intergenic 30.0%
CAAATAATAATCTTTGTGGC+AGG + chr6_4:84068666-84068685 None:intergenic 30.0%
!!! TGATAGTTTTGGTAATCTAG+AGG - chr6_4:84068684-84068703 Msa1000790:CDS 30.0%
!!! GATAGTTTTGGTAATCTAGA+GGG - chr6_4:84068685-84068704 Msa1000790:CDS 30.0%
TAATCTAGAGGGTTAAAGTT+TGG - chr6_4:84068696-84068715 Msa1000790:CDS 30.0%
TTAAAATGGACCACACAATA+AGG + chr6_4:84068913-84068932 None:intergenic 30.0%
! CTCTTCAATTTTATTCCTAC+AGG - chr6_4:84068936-84068955 Msa1000790:intron 30.0%
! CAATTTTATTCCTACAGGTA+AGG - chr6_4:84068941-84068960 Msa1000790:intron 30.0%
GTTGGGTTTATAATGAAAGT+TGG - chr6_4:84069075-84069094 Msa1000790:intron 30.0%
CCATTCACAATGTATGAAAA+AGG + chr6_4:84069110-84069129 None:intergenic 30.0%
!! CCTTTTTCATACATTGTGAA+TGG - chr6_4:84069107-84069126 Msa1000790:intron 30.0%
TTTACTTTATAACAGGACCA+AGG - chr6_4:84069196-84069215 Msa1000790:CDS 30.0%
AAGAAATGATCTTCAAGTAG+TGG - chr6_4:84069228-84069247 Msa1000790:intron 30.0%
AGAAATGATCTTCAAGTAGT+GGG - chr6_4:84069229-84069248 Msa1000790:intron 30.0%
ATTTACGAAGAGAAGTGAAA+CGG + chr6_4:84067669-84067688 None:intergenic 30.0%
TGATAGAACCAATTGATCTA+TGG + chr6_4:84067858-84067877 None:intergenic 30.0%
!!! GGTTTTAGGGTTTTTGATTT+GGG - chr6_4:84068079-84068098 Msa1000790:intron 30.0%
!! ATCAAAGGAATCCGTTTTTA+TGG - chr6_4:84068319-84068338 Msa1000790:intron 30.0%
!! TCATCTCTCTAAAGTTAGTA+AGG - chr6_4:84068447-84068466 Msa1000790:intron 30.0%
!! ATATTGGTTCTGAGTATGAA+AGG - chr6_4:84068482-84068501 Msa1000790:intron 30.0%
GTAAATCTGAGTCCAAAATA+TGG - chr6_4:84068619-84068638 Msa1000790:intron 30.0%
!!! GCATTTGTTATCCCATATTT+TGG + chr6_4:84068634-84068653 None:intergenic 30.0%
ATATGGGATAACAAATGCTA+AGG - chr6_4:84068636-84068655 Msa1000790:intron 30.0%
AATAATAATCTTTGTGGCAG+GGG + chr6_4:84068664-84068683 None:intergenic 30.0%
CAAATAATAATCTTTGTGGC+AGG + chr6_4:84068666-84068685 None:intergenic 30.0%
!!! TGATAGTTTTGGTAATCTAG+AGG - chr6_4:84068684-84068703 Msa1000790:CDS 30.0%
!!! GATAGTTTTGGTAATCTAGA+GGG - chr6_4:84068685-84068704 Msa1000790:CDS 30.0%
TAATCTAGAGGGTTAAAGTT+TGG - chr6_4:84068696-84068715 Msa1000790:CDS 30.0%
TTAAAATGGACCACACAATA+AGG + chr6_4:84068913-84068932 None:intergenic 30.0%
! CTCTTCAATTTTATTCCTAC+AGG - chr6_4:84068936-84068955 Msa1000790:intron 30.0%
! CAATTTTATTCCTACAGGTA+AGG - chr6_4:84068941-84068960 Msa1000790:intron 30.0%
GTTGGGTTTATAATGAAAGT+TGG - chr6_4:84069075-84069094 Msa1000790:intron 30.0%
CCATTCACAATGTATGAAAA+AGG + chr6_4:84069110-84069129 None:intergenic 30.0%
!! CCTTTTTCATACATTGTGAA+TGG - chr6_4:84069107-84069126 Msa1000790:intron 30.0%
TTTACTTTATAACAGGACCA+AGG - chr6_4:84069196-84069215 Msa1000790:CDS 30.0%
AAGAAATGATCTTCAAGTAG+TGG - chr6_4:84069228-84069247 Msa1000790:intron 30.0%
AGAAATGATCTTCAAGTAGT+GGG - chr6_4:84069229-84069248 Msa1000790:intron 30.0%
CACTCGAAACTCATCTATAA+AGG - chr6_4:84067995-84068014 Msa1000790:intron 35.0%
TTGCTGCTAGATTGTGATTT+CGG - chr6_4:84068057-84068076 Msa1000790:intron 35.0%
!!! AGATTGTGATTTCGGGTTTT+AGG - chr6_4:84068065-84068084 Msa1000790:intron 35.0%
!!! GATTGTGATTTCGGGTTTTA+GGG - chr6_4:84068066-84068085 Msa1000790:intron 35.0%
!!! GGGTTTTAGGGTTTTTGATT+TGG - chr6_4:84068078-84068097 Msa1000790:intron 35.0%
!! CTCCTTCAATTTGGGTTTTA+GGG - chr6_4:84068118-84068137 Msa1000790:intron 35.0%
AACCCTAAAACCCAAATTGA+AGG + chr6_4:84068123-84068142 None:intergenic 35.0%
AGGTATCTAATCAGTACAGT+AGG - chr6_4:84068279-84068298 Msa1000790:intron 35.0%
GGTATCTAATCAGTACAGTA+GGG - chr6_4:84068280-84068299 Msa1000790:intron 35.0%
GTATCTAATCAGTACAGTAG+GGG - chr6_4:84068281-84068300 Msa1000790:intron 35.0%
TTGTTACTCCAATCCTGTAA+TGG - chr6_4:84068528-84068547 Msa1000790:intron 35.0%
TGTTACTCCAATCCTGTAAT+GGG - chr6_4:84068529-84068548 Msa1000790:intron 35.0%
CTCAGATTTACATACAAGCA+TGG + chr6_4:84068610-84068629 None:intergenic 35.0%
ATAATAATCTTTGTGGCAGG+GGG + chr6_4:84068663-84068682 None:intergenic 35.0%
CAAGAATGATGAACGGATAA+AGG + chr6_4:84068803-84068822 None:intergenic 35.0%
!!! TAGGTTGTTTTTAGGGCAAT+TGG - chr6_4:84068851-84068870 Msa1000790:intron 35.0%
!!! TTTTTAGGGCAATTGGAAAC+TGG - chr6_4:84068858-84068877 Msa1000790:intron 35.0%
GTTGTGAATACCTTATTGTG+TGG - chr6_4:84068900-84068919 Msa1000790:intron 35.0%
TATCATTGATCCTTACCTGT+AGG + chr6_4:84068954-84068973 None:intergenic 35.0%
AATTCCATTCTCTGCAACTT+TGG + chr6_4:84069292-84069311 None:intergenic 35.0%
AGAAAGATTGCATTATGTGC+AGG - chr6_4:84069378-84069397 Msa1000790:CDS 35.0%
CACTCGAAACTCATCTATAA+AGG - chr6_4:84067995-84068014 Msa1000790:intron 35.0%
TTGCTGCTAGATTGTGATTT+CGG - chr6_4:84068057-84068076 Msa1000790:intron 35.0%
!!! AGATTGTGATTTCGGGTTTT+AGG - chr6_4:84068065-84068084 Msa1000790:intron 35.0%
!!! GATTGTGATTTCGGGTTTTA+GGG - chr6_4:84068066-84068085 Msa1000790:intron 35.0%
!!! GGGTTTTAGGGTTTTTGATT+TGG - chr6_4:84068078-84068097 Msa1000790:intron 35.0%
!! CTCCTTCAATTTGGGTTTTA+GGG - chr6_4:84068118-84068137 Msa1000790:intron 35.0%
AACCCTAAAACCCAAATTGA+AGG + chr6_4:84068123-84068142 None:intergenic 35.0%
AGGTATCTAATCAGTACAGT+AGG - chr6_4:84068279-84068298 Msa1000790:intron 35.0%
GGTATCTAATCAGTACAGTA+GGG - chr6_4:84068280-84068299 Msa1000790:intron 35.0%
GTATCTAATCAGTACAGTAG+GGG - chr6_4:84068281-84068300 Msa1000790:intron 35.0%
TTGTTACTCCAATCCTGTAA+TGG - chr6_4:84068528-84068547 Msa1000790:intron 35.0%
TGTTACTCCAATCCTGTAAT+GGG - chr6_4:84068529-84068548 Msa1000790:intron 35.0%
CTCAGATTTACATACAAGCA+TGG + chr6_4:84068610-84068629 None:intergenic 35.0%
ATAATAATCTTTGTGGCAGG+GGG + chr6_4:84068663-84068682 None:intergenic 35.0%
CAAGAATGATGAACGGATAA+AGG + chr6_4:84068803-84068822 None:intergenic 35.0%
!!! TAGGTTGTTTTTAGGGCAAT+TGG - chr6_4:84068851-84068870 Msa1000790:intron 35.0%
!!! TTTTTAGGGCAATTGGAAAC+TGG - chr6_4:84068858-84068877 Msa1000790:intron 35.0%
GTTGTGAATACCTTATTGTG+TGG - chr6_4:84068900-84068919 Msa1000790:intron 35.0%
TATCATTGATCCTTACCTGT+AGG + chr6_4:84068954-84068973 None:intergenic 35.0%
AATTCCATTCTCTGCAACTT+TGG + chr6_4:84069292-84069311 None:intergenic 35.0%
AGAAAGATTGCATTATGTGC+AGG - chr6_4:84069378-84069397 Msa1000790:CDS 35.0%
! GAAGAGAAGTGAAACGGTTT+TGG + chr6_4:84067663-84067682 None:intergenic 40.0%
TATGAAAGAGTGAGAGTGAG+AGG + chr6_4:84067771-84067790 None:intergenic 40.0%
TCTCACTCTTTCATACACGA+AGG - chr6_4:84067776-84067795 Msa1000790:CDS 40.0%
AAATACCTTTGTGAGGGAGA+GGG + chr6_4:84067824-84067843 None:intergenic 40.0%
AAAATACCTTTGTGAGGGAG+AGG + chr6_4:84067825-84067844 None:intergenic 40.0%
TGCTGCTAGATTGTGATTTC+GGG - chr6_4:84068058-84068077 Msa1000790:intron 40.0%
ATTCACGTGCTCCTTCAATT+TGG - chr6_4:84068109-84068128 Msa1000790:intron 40.0%
TTCACGTGCTCCTTCAATTT+GGG - chr6_4:84068110-84068129 Msa1000790:intron 40.0%
!! GCTCCTTCAATTTGGGTTTT+AGG - chr6_4:84068117-84068136 Msa1000790:intron 40.0%
CACATTCAAAACCATGTTCG+TGG - chr6_4:84068411-84068430 Msa1000790:intron 40.0%
AATGTTGCCCATTACAGGAT+TGG + chr6_4:84068539-84068558 None:intergenic 40.0%
GACATAATGTTGCCCATTAC+AGG + chr6_4:84068544-84068563 None:intergenic 40.0%
TAATAATCTTTGTGGCAGGG+GGG + chr6_4:84068662-84068681 None:intergenic 40.0%
GAGGGTTAAAGTTTGGAAAG+TGG - chr6_4:84068703-84068722 Msa1000790:CDS 40.0%
TGGAAGATTGCAGAGAAAGA+AGG - chr6_4:84069264-84069283 Msa1000790:intron 40.0%
AATGGAATTGCACCTTGTGT+TGG - chr6_4:84069303-84069322 Msa1000790:CDS 40.0%
TAGCAACAATACTGTCTGCT+AGG - chr6_4:84069335-84069354 Msa1000790:CDS 40.0%
TGTCTGCTAGGAATGTTGTT+GGG - chr6_4:84069347-84069366 Msa1000790:CDS 40.0%
AGCTTGGAAAGAGAAACAAG+AGG - chr6_4:84069402-84069421 Msa1000790:CDS 40.0%
! ACAAGAGGATCATCTAGTTC+TGG - chr6_4:84069417-84069436 Msa1000790:CDS 40.0%
!! CAAGAGGATCATCTAGTTCT+GGG - chr6_4:84069418-84069437 Msa1000790:exon 40.0%
! GAAGAGAAGTGAAACGGTTT+TGG + chr6_4:84067663-84067682 None:intergenic 40.0%
TATGAAAGAGTGAGAGTGAG+AGG + chr6_4:84067771-84067790 None:intergenic 40.0%
TCTCACTCTTTCATACACGA+AGG - chr6_4:84067776-84067795 Msa1000790:CDS 40.0%
AAATACCTTTGTGAGGGAGA+GGG + chr6_4:84067824-84067843 None:intergenic 40.0%
AAAATACCTTTGTGAGGGAG+AGG + chr6_4:84067825-84067844 None:intergenic 40.0%
TGCTGCTAGATTGTGATTTC+GGG - chr6_4:84068058-84068077 Msa1000790:intron 40.0%
ATTCACGTGCTCCTTCAATT+TGG - chr6_4:84068109-84068128 Msa1000790:intron 40.0%
TTCACGTGCTCCTTCAATTT+GGG - chr6_4:84068110-84068129 Msa1000790:intron 40.0%
!! GCTCCTTCAATTTGGGTTTT+AGG - chr6_4:84068117-84068136 Msa1000790:intron 40.0%
CACATTCAAAACCATGTTCG+TGG - chr6_4:84068411-84068430 Msa1000790:intron 40.0%
AATGTTGCCCATTACAGGAT+TGG + chr6_4:84068539-84068558 None:intergenic 40.0%
GACATAATGTTGCCCATTAC+AGG + chr6_4:84068544-84068563 None:intergenic 40.0%
TAATAATCTTTGTGGCAGGG+GGG + chr6_4:84068662-84068681 None:intergenic 40.0%
GAGGGTTAAAGTTTGGAAAG+TGG - chr6_4:84068703-84068722 Msa1000790:CDS 40.0%
TGGAAGATTGCAGAGAAAGA+AGG - chr6_4:84069264-84069283 Msa1000790:intron 40.0%
AATGGAATTGCACCTTGTGT+TGG - chr6_4:84069303-84069322 Msa1000790:CDS 40.0%
TAGCAACAATACTGTCTGCT+AGG - chr6_4:84069335-84069354 Msa1000790:CDS 40.0%
TGTCTGCTAGGAATGTTGTT+GGG - chr6_4:84069347-84069366 Msa1000790:CDS 40.0%
AGCTTGGAAAGAGAAACAAG+AGG - chr6_4:84069402-84069421 Msa1000790:CDS 40.0%
! ACAAGAGGATCATCTAGTTC+TGG - chr6_4:84069417-84069436 Msa1000790:CDS 40.0%
!! CAAGAGGATCATCTAGTTCT+GGG - chr6_4:84069418-84069437 Msa1000790:exon 40.0%
AAATCTCCCCTCACTCATCA+TGG - chr6_4:84067685-84067704 Msa1000790:CDS 45.0%
TGGGTTTCCATGATGAGTGA+GGG + chr6_4:84067695-84067714 None:intergenic 45.0%
ATGAGATGAGGTGAGGTTCT+GGG + chr6_4:84067714-84067733 None:intergenic 45.0%
AGAGGATTGACAGAGGCAAT+AGG + chr6_4:84067753-84067772 None:intergenic 45.0%
GTTGTCAAAGAGTCGTCACA+TGG + chr6_4:84068217-84068236 None:intergenic 45.0%
CACATTCAAAACCCTGTTCG+TGG - chr6_4:84068374-84068393 Msa1000790:intron 45.0%
CACAAGAAAGTCCACGAACA+GGG + chr6_4:84068388-84068407 None:intergenic 45.0%
ACACAAGAAAGTCCACGAAC+AGG + chr6_4:84068389-84068408 None:intergenic 45.0%
ACTGAGAAAGTCCACGAACA+TGG + chr6_4:84068425-84068444 None:intergenic 45.0%
CATTTCTTCCTCTTGCTCCT+TGG + chr6_4:84069216-84069235 None:intergenic 45.0%
! GATCTTCAAGTAGTGGGAAG+AGG - chr6_4:84069235-84069254 Msa1000790:intron 45.0%
GGTTCCAAAGTTGCAGAGAA+TGG - chr6_4:84069285-84069304 Msa1000790:intron 45.0%
TTGCACCTTGTGTTGGAAAC+TGG - chr6_4:84069310-84069329 Msa1000790:CDS 45.0%
CTACACCAGTTTCCAACACA+AGG + chr6_4:84069318-84069337 None:intergenic 45.0%
CTGTCTGCTAGGAATGTTGT+TGG - chr6_4:84069346-84069365 Msa1000790:CDS 45.0%
GTCTGCTAGGAATGTTGTTG+GGG - chr6_4:84069348-84069367 Msa1000790:CDS 45.0%
TGCATTATGTGCAGGTAGCT+TGG - chr6_4:84069386-84069405 Msa1000790:CDS 45.0%
AAATCTCCCCTCACTCATCA+TGG - chr6_4:84067685-84067704 Msa1000790:CDS 45.0%
TGGGTTTCCATGATGAGTGA+GGG + chr6_4:84067695-84067714 None:intergenic 45.0%
ATGAGATGAGGTGAGGTTCT+GGG + chr6_4:84067714-84067733 None:intergenic 45.0%
AGAGGATTGACAGAGGCAAT+AGG + chr6_4:84067753-84067772 None:intergenic 45.0%
GTTGTCAAAGAGTCGTCACA+TGG + chr6_4:84068217-84068236 None:intergenic 45.0%
CACATTCAAAACCCTGTTCG+TGG - chr6_4:84068374-84068393 Msa1000790:intron 45.0%
CACAAGAAAGTCCACGAACA+GGG + chr6_4:84068388-84068407 None:intergenic 45.0%
ACACAAGAAAGTCCACGAAC+AGG + chr6_4:84068389-84068408 None:intergenic 45.0%
ACTGAGAAAGTCCACGAACA+TGG + chr6_4:84068425-84068444 None:intergenic 45.0%
CATTTCTTCCTCTTGCTCCT+TGG + chr6_4:84069216-84069235 None:intergenic 45.0%
! GATCTTCAAGTAGTGGGAAG+AGG - chr6_4:84069235-84069254 Msa1000790:intron 45.0%
GGTTCCAAAGTTGCAGAGAA+TGG - chr6_4:84069285-84069304 Msa1000790:intron 45.0%
TTGCACCTTGTGTTGGAAAC+TGG - chr6_4:84069310-84069329 Msa1000790:CDS 45.0%
CTACACCAGTTTCCAACACA+AGG + chr6_4:84069318-84069337 None:intergenic 45.0%
CTGTCTGCTAGGAATGTTGT+TGG - chr6_4:84069346-84069365 Msa1000790:CDS 45.0%
GTCTGCTAGGAATGTTGTTG+GGG - chr6_4:84069348-84069367 Msa1000790:CDS 45.0%
TGCATTATGTGCAGGTAGCT+TGG - chr6_4:84069386-84069405 Msa1000790:CDS 45.0%
GGGTTTCCATGATGAGTGAG+GGG + chr6_4:84067694-84067713 None:intergenic 50.0%
CTGGGTTTCCATGATGAGTG+AGG + chr6_4:84067696-84067715 None:intergenic 50.0%
GATGAGATGAGGTGAGGTTC+TGG + chr6_4:84067715-84067734 None:intergenic 50.0%
AGAGAGAGGTCGATGAGATG+AGG + chr6_4:84067726-84067745 None:intergenic 50.0%
AGGCAATAGGTTGCAGAGAG+AGG + chr6_4:84067740-84067759 None:intergenic 50.0%
GAGAGTGAGAGGATTGACAG+AGG + chr6_4:84067760-84067779 None:intergenic 50.0%
TAACAGGACCAAGGAGCAAG+AGG - chr6_4:84069205-84069224 Msa1000790:intron 50.0%
! GTAGTGGGAAGAGGTCTTCT+TGG - chr6_4:84069244-84069263 Msa1000790:intron 50.0%
GGGTTTCCATGATGAGTGAG+GGG + chr6_4:84067694-84067713 None:intergenic 50.0%
CTGGGTTTCCATGATGAGTG+AGG + chr6_4:84067696-84067715 None:intergenic 50.0%
GATGAGATGAGGTGAGGTTC+TGG + chr6_4:84067715-84067734 None:intergenic 50.0%
AGAGAGAGGTCGATGAGATG+AGG + chr6_4:84067726-84067745 None:intergenic 50.0%
AGGCAATAGGTTGCAGAGAG+AGG + chr6_4:84067740-84067759 None:intergenic 50.0%
GAGAGTGAGAGGATTGACAG+AGG + chr6_4:84067760-84067779 None:intergenic 50.0%
TAACAGGACCAAGGAGCAAG+AGG - chr6_4:84069205-84069224 Msa1000790:intron 50.0%
! GTAGTGGGAAGAGGTCTTCT+TGG - chr6_4:84069244-84069263 Msa1000790:intron 50.0%
GAGGTCGATGAGATGAGGTG+AGG + chr6_4:84067721-84067740 None:intergenic 55.0%
AGGGCGATGGAGCGATGAAA+GGG + chr6_4:84067805-84067824 None:intergenic 55.0%
GAGGTCGATGAGATGAGGTG+AGG + chr6_4:84067721-84067740 None:intergenic 55.0%
AGGGCGATGGAGCGATGAAA+GGG + chr6_4:84067805-84067824 None:intergenic 55.0%
GAGGGCGATGGAGCGATGAA+AGG + chr6_4:84067806-84067825 None:intergenic 60.0%
CTTTGTGAGGGAGAGGGCGA+TGG + chr6_4:84067818-84067837 None:intergenic 60.0%
CATCGCCCTCTCCCTCACAA+AGG - chr6_4:84067816-84067835 Msa1000790:CDS 60.0%
GAGGGCGATGGAGCGATGAA+AGG + chr6_4:84067806-84067825 None:intergenic 60.0%
CTTTGTGAGGGAGAGGGCGA+TGG + chr6_4:84067818-84067837 None:intergenic 60.0%
CATCGCCCTCTCCCTCACAA+AGG - chr6_4:84067816-84067835 Msa1000790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 84067595 84069545 84067595 ID=Msa1000790;Name=Msa1000790
chr6_4 mRNA 84067595 84069545 84067595 ID=Msa1000790-mRNA-1;Parent=Msa1000790;Name=Msa1000790-mRNA-1;_AED=0.21;_eAED=0.31;_QI=109|0.25|0.6|1|0.25|0.2|5|44|224
chr6_4 exon 84067595 84067929 84067595 ID=Msa1000790-mRNA-1:exon:16329;Parent=Msa1000790-mRNA-1
chr6_4 exon 84068238 84068286 84068238 ID=Msa1000790-mRNA-1:exon:16328;Parent=Msa1000790-mRNA-1
chr6_4 exon 84068681 84068786 84068681 ID=Msa1000790-mRNA-1:exon:16327;Parent=Msa1000790-mRNA-1
chr6_4 exon 84069124 84069218 84069124 ID=Msa1000790-mRNA-1:exon:16326;Parent=Msa1000790-mRNA-1
chr6_4 exon 84069303 84069545 84069303 ID=Msa1000790-mRNA-1:exon:16325;Parent=Msa1000790-mRNA-1
chr6_4 five_prime_UTR 84069437 84069545 84069437 ID=Msa1000790-mRNA-1:five_prime_utr;Parent=Msa1000790-mRNA-1
chr6_4 CDS 84069303 84069436 84069303 ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1
chr6_4 CDS 84069124 84069218 84069124 ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1
chr6_4 CDS 84068681 84068786 84068681 ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1
chr6_4 CDS 84068238 84068286 84068238 ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1
chr6_4 CDS 84067639 84067929 84067639 ID=Msa1000790-mRNA-1:cds;Parent=Msa1000790-mRNA-1
chr6_4 three_prime_UTR 84067595 84067638 84067595 ID=Msa1000790-mRNA-1:three_prime_utr;Parent=Msa1000790-mRNA-1
Gene Sequence

>Msa1000790

ATGGAAACCCAGAACCTCACCTCATCTCATCGACCTCTCTCTGCAACCTATTGCCTCTGTCAATCCTCTCACTCTCACTCTTTCATACACGAAGGAAACCCTTTCATCGCTCCATCGCCCTCTCCCTCACAAAGGTTTGATGTGGTTGATTTCAATGAAAAATTGGGATTAAGAACAATTAAAATTTGGATGCTAAGTCATTCTTCTCACTCGAAACTCATCTATAAAGGATCTCGTATAGACGTGTCACACATTCAAAACCCTGTTCGTGGACTTTCTTGTGTCACACATTCAAAACCATGTTCGTGGACTTTCTCAGTAGTCATCTCTCTAAAGTTGTTTTTAGGGCAATTGGAAACTGGTTCAAATTATAAAAGCTTGGTTGACCAAGGAGCAAGAGGAAGAAATGATCTTCAAGTAGTGGGAAGAGGTCTTCTTGGAAGATTGCAGAGAAAGAAGGTTCCAAAGTTGCAGAGAATGGAATTGCACCTTGTGTTGGAAACTGGTGTAGCAACAATACTGTCTGCTAGGAATGTTGTTGGGGATTATGTAGAAAGATTGCATTATGTGCAGGTAGCTTGGAAAGAGAAACAAGAGGATCATCTAGTTCTGGGAATGTTTAATGTTTTTTGTTCATTTAGTATAAGATTTCATTTTTGGTATTATGAATCTTGA

Protein sequence

>Msa1000790

METQNLTSSHRPLSATYCLCQSSHSHSFIHEGNPFIAPSPSPSQRFDVVDFNEKLGLRTIKIWMLSHSSHSKLIYKGSRIDVSHIQNPVRGLSCVTHSKPCSWTFSVVISLKLFLGQLETGSNYKSLVDQGARGRNDLQVVGRGLLGRLQRKKVPKLQRMELHLVLETGVATILSARNVVGDYVERLHYVQVAWKEKQEDHLVLGMFNVFCSFSIRFHFWYYES*