Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926810 | XP_013453113.1 | 93.093 | 333 | 23 | 0 | 1 | 333 | 1 | 333 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926810 | sp|Q07469|BSPA_POPDE | 34.628 | 309 | 182 | 7 | 24 | 330 | 11 | 301 | 1.01e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0926810 | Msa1165460 | 0.807211 | 5.646580e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926810 | MtrunA17_Chr6g0486091 | 93.093 | 333 | 23 | 0 | 1 | 333 | 1 | 333 | 0.0 | 650 |
| Msa0926810 | MtrunA17_Chr6g0486101 | 94.044 | 319 | 19 | 0 | 15 | 333 | 14 | 332 | 0.0 | 630 |
| Msa0926810 | MtrunA17_Chr6g0486081 | 87.654 | 324 | 35 | 1 | 15 | 333 | 13 | 336 | 0.0 | 588 |
| Msa0926810 | MtrunA17_Chr3g0140061 | 51.429 | 315 | 139 | 4 | 31 | 333 | 38 | 350 | 5.83e-118 | 344 |
| Msa0926810 | MtrunA17_Chr3g0140051 | 51.429 | 315 | 139 | 4 | 31 | 333 | 38 | 350 | 8.28e-118 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926810 | AT4G28940.1 | 56.891 | 341 | 131 | 3 | 3 | 333 | 4 | 338 | 9.98e-143 | 407 |
| Msa0926810 | AT4G28940.2 | 60.714 | 252 | 84 | 2 | 91 | 333 | 1 | 246 | 1.10e-111 | 325 |
| Msa0926810 | AT4G24350.1 | 39.739 | 307 | 177 | 4 | 28 | 333 | 34 | 333 | 1.72e-70 | 223 |
| Msa0926810 | AT4G24340.1 | 39.088 | 307 | 176 | 4 | 28 | 333 | 39 | 335 | 1.08e-67 | 216 |
| Msa0926810 | AT4G24350.2 | 38.846 | 260 | 153 | 3 | 28 | 286 | 34 | 288 | 8.06e-59 | 191 |
| Msa0926810 | AT4G24350.3 | 38.428 | 229 | 133 | 4 | 106 | 333 | 1 | 222 | 2.11e-47 | 160 |
| Msa0926810 | AT4G24350.4 | 37.306 | 193 | 115 | 3 | 94 | 285 | 6 | 193 | 1.49e-38 | 136 |
Find 78 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAACATAGATTCAAAATT+TGG | 0.120323 | 6_2:-70899287 | None:intergenic |
| TAAACAAAGTAAGCAATAAT+TGG | 0.152148 | 6_2:-70900748 | None:intergenic |
| TCTCCAAGAAAGTTGATTAA+TGG | 0.195648 | 6_2:-70899497 | None:intergenic |
| GAATTGTCACATCTCCAATT+TGG | 0.244108 | 6_2:-70900823 | None:intergenic |
| GAGTCAGAGCTGGTAGGATA+TGG | 0.250547 | 6_2:+70899189 | Msa0926810:five_prime_UTR |
| TTGATGGAACTCCTGAAATT+TGG | 0.261576 | 6_2:+70901576 | Msa0926810:CDS |
| GTGCCATTAATCAACTTTCT+TGG | 0.268654 | 6_2:+70899494 | Msa0926810:CDS |
| AAAGCAGGCTGCCAAATTTC+AGG | 0.270584 | 6_2:-70901587 | None:intergenic |
| CTTACTTTGTTTAATATAGA+AGG | 0.275450 | 6_2:+70900758 | Msa0926810:CDS |
| CTCGCCACAATAGGCTTTCT+TGG | 0.284730 | 6_2:-70902391 | None:intergenic |
| TGGCGAATTGGAAAAGAAAA+AGG | 0.293433 | 6_2:+70900585 | Msa0926810:CDS |
| AGTTGTGATGATGGTATTAT+TGG | 0.306167 | 6_2:+70899450 | Msa0926810:CDS |
| TGGAGATTTCAGAACAGAAT+TGG | 0.318936 | 6_2:+70901451 | Msa0926810:CDS |
| TTTCCTTACTTTGACTTTGC+TGG | 0.325088 | 6_2:+70899628 | Msa0926810:CDS |
| ATAGAAGGAGTTCTACATTA+TGG | 0.328862 | 6_2:+70900773 | Msa0926810:CDS |
| TTAAATTCTAGATTCCAAAT+TGG | 0.338067 | 6_2:+70900809 | Msa0926810:CDS |
| AAAGCTACTAAATTATAATA+AGG | 0.340766 | 6_2:-70902674 | None:intergenic |
| ACCATAGCTTATTCATATAT+AGG | 0.358472 | 6_2:-70899136 | None:intergenic |
| AGGAGAATGGAGTTTCTTCT+AGG | 0.358920 | 6_2:+70899424 | Msa0926810:exon |
| ACCACTTGAAAGATAACAAT+TGG | 0.380416 | 6_2:+70899401 | Msa0926810:five_prime_UTR |
| GTTCTACATTATGGAATTGC+AGG | 0.380755 | 6_2:+70900782 | Msa0926810:CDS |
| TAAATCAGACAATGCTCTAA+TGG | 0.381030 | 6_2:-70902560 | None:intergenic |
| AAAATCTGTTGAACAAGGTT+TGG | 0.395584 | 6_2:+70901528 | Msa0926810:CDS |
| GGCACAACTATACCAATATA+TGG | 0.398193 | 6_2:-70899547 | None:intergenic |
| AATAGCAAAGGACCATATAT+TGG | 0.403456 | 6_2:+70899535 | Msa0926810:CDS |
| AAGGTTATTGTTGTAATGAC+TGG | 0.405173 | 6_2:+70900604 | Msa0926810:CDS |
| TGTGACAATTCCACAGTATT+GGG | 0.406133 | 6_2:+70900835 | Msa0926810:CDS |
| ATTTCAGGAGTTCCATCAAC+AGG | 0.406190 | 6_2:-70901572 | None:intergenic |
| TAGGATATGGGCGTATTCTC+TGG | 0.410790 | 6_2:+70899202 | Msa0926810:five_prime_UTR |
| TTCTTTACTCTCGCCACAAT+AGG | 0.415417 | 6_2:-70902400 | None:intergenic |
| GGAGATTTCAGAACAGAATT+GGG | 0.417829 | 6_2:+70901452 | Msa0926810:CDS |
| GGAAGTAGCATCAATGCTTA+TGG | 0.432528 | 6_2:+70899472 | Msa0926810:CDS |
| GATTTAATTGAGCAGAGGTT+TGG | 0.438058 | 6_2:+70901419 | Msa0926810:intron |
| AAACAAAGTAAGCAATAATT+GGG | 0.441098 | 6_2:-70900747 | None:intergenic |
| TGTAATGACTGGAGAGAGTA+TGG | 0.441584 | 6_2:+70900615 | Msa0926810:CDS |
| GGGTTCAACTCAAATGCATT+TGG | 0.457441 | 6_2:-70899568 | None:intergenic |
| TCCAATTGTTATCTTTCAAG+TGG | 0.464332 | 6_2:-70899402 | None:intergenic |
| CACAGGACTTTGGCATTGGC+AGG | 0.468970 | 6_2:+70900862 | Msa0926810:CDS |
| AGAGCATTGTCTGATTTAGC+TGG | 0.470402 | 6_2:+70902565 | Msa0926810:CDS |
| AGATAACAATTGGAGGAGAA+TGG | 0.474504 | 6_2:+70899411 | Msa0926810:exon |
| GTTGTGATGATGGTATTATT+GGG | 0.489000 | 6_2:+70899451 | Msa0926810:CDS |
| ATGTGACAATTCCACAGTAT+TGG | 0.489719 | 6_2:+70900834 | Msa0926810:CDS |
| ATTGGGCACACACAGGACTT+TGG | 0.492714 | 6_2:+70900852 | Msa0926810:CDS |
| CAGAGGTTTGGTGAAGACAT+TGG | 0.496179 | 6_2:+70901431 | Msa0926810:intron |
| TTACCAGCAAAGTCAAAGTA+AGG | 0.499782 | 6_2:-70899631 | None:intergenic |
| AGTCAGAGCTGGTAGGATAT+GGG | 0.500579 | 6_2:+70899190 | Msa0926810:five_prime_UTR |
| TCTAGGTGTAGTTGTGATGA+TGG | 0.507012 | 6_2:+70899441 | Msa0926810:CDS |
| TTGTCTGATTTAGCTGGAGG+AGG | 0.516673 | 6_2:+70902571 | Msa0926810:CDS |
| AAGCTTGATGATTGAAGAAG+AGG | 0.530622 | 6_2:-70899589 | None:intergenic |
| GCAGCACTTTCCATGTCTGT+TGG | 0.535004 | 6_2:-70902496 | None:intergenic |
| CACACACAGGACTTTGGCAT+TGG | 0.539237 | 6_2:+70900858 | Msa0926810:CDS |
| ATATTGTCATCTCCTCTACT+AGG | 0.547007 | 6_2:+70902835 | Msa0926810:three_prime_UTR |
| AATAGATACTTCATTGCTCA+AGG | 0.548418 | 6_2:-70902599 | None:intergenic |
| TGAAATTGCAAGAAAGCTCA+AGG | 0.549984 | 6_2:+70901637 | Msa0926810:CDS |
| TCCTATATATGAATAAGCTA+TGG | 0.559679 | 6_2:+70899135 | Msa0926810:five_prime_UTR |
| TTGTGGCGAGAGTAAAGAAA+GGG | 0.561851 | 6_2:+70902404 | Msa0926810:CDS |
| AAGTAAGGAAACTTGTTATG+AGG | 0.563271 | 6_2:-70899616 | None:intergenic |
| CTTGCCAAGAAAGCCTATTG+TGG | 0.563408 | 6_2:+70902387 | Msa0926810:CDS |
| ATCAGCAATATCAATAGCAA+AGG | 0.567536 | 6_2:+70899523 | Msa0926810:CDS |
| TTTAATAAGAGAGTCAGAGC+TGG | 0.585435 | 6_2:+70899179 | Msa0926810:five_prime_UTR |
| CACAAAACATTCCAAATCAG+AGG | 0.590274 | 6_2:+70901505 | Msa0926810:CDS |
| ATTGTGGCGAGAGTAAAGAA+AGG | 0.591037 | 6_2:+70902403 | Msa0926810:CDS |
| TTTGTTGTCAACAAACACAT+TGG | 0.593091 | 6_2:-70902434 | None:intergenic |
| ACTTGAAAGATAACAATTGG+AGG | 0.598550 | 6_2:+70899404 | Msa0926810:five_prime_UTR |
| TCATATTATTTATATCAACA+TGG | 0.602649 | 6_2:-70899256 | None:intergenic |
| TAAGCAAGGGTCGTTATGAG+AGG | 0.602738 | 6_2:+70902715 | Msa0926810:three_prime_UTR |
| AATGCTCTAATGGCAATGAA+AGG | 0.608969 | 6_2:-70902550 | None:intergenic |
| AGAGGAAAATCTGTTGAACA+AGG | 0.609039 | 6_2:+70901523 | Msa0926810:CDS |
| TGATGCTACTCCAACAGACA+TGG | 0.610339 | 6_2:+70902486 | Msa0926810:CDS |
| GCATTGTCTGATTTAGCTGG+AGG | 0.619105 | 6_2:+70902568 | Msa0926810:CDS |
| AGATAATGATGACCTAGTAG+AGG | 0.619985 | 6_2:-70902847 | None:intergenic |
| AGCTTGATGATTGAAGAAGA+GGG | 0.625785 | 6_2:-70899588 | None:intergenic |
| AAGCAAGGGTCGTTATGAGA+GGG | 0.642243 | 6_2:+70902716 | Msa0926810:three_prime_UTR |
| ATAAGAGAGTCAGAGCTGGT+AGG | 0.644134 | 6_2:+70899183 | Msa0926810:five_prime_UTR |
| CCACAGTATTGGGCACACAC+AGG | 0.670059 | 6_2:+70900845 | Msa0926810:CDS |
| ATGCACACACATCATACACA+TGG | 0.672205 | 6_2:-70899358 | None:intergenic |
| CCTGTGTGTGCCCAATACTG+TGG | 0.699772 | 6_2:-70900845 | None:intergenic |
| TGTGGCGAGAGTAAAGAAAG+GGG | 0.727480 | 6_2:+70902405 | Msa0926810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAATTAAAAAATGAT+TGG | - | chr6_2:70901027-70901046 | None:intergenic | 10.0% |
| !!! | ATTTAATTTATATACATCAA+CGG | + | chr6_2:70901097-70901116 | Msa0926810:intron | 10.0% |
| !!! | GGATTATATCTTTTTATAAT+AGG | - | chr6_2:70899118-70899137 | None:intergenic | 15.0% |
| !! | TCATATTATTTATATCAACA+TGG | - | chr6_2:70899259-70899278 | None:intergenic | 15.0% |
| !! | ATAAACATAGATTCAAAATT+TGG | - | chr6_2:70899290-70899309 | None:intergenic | 15.0% |
| !!! | CATTTATATATTTTCATGTT+TGG | + | chr6_2:70899378-70899397 | Msa0926810:five_prime_UTR | 15.0% |
| !! | AATTTCCAACAAAAATATTA+AGG | + | chr6_2:70900178-70900197 | Msa0926810:intron | 15.0% |
| !! | AAGATTCATTATATAAGATT+TGG | - | chr6_2:70900321-70900340 | None:intergenic | 15.0% |
| !! | TATAATAGAAGTTTAAGTAA+AGG | - | chr6_2:70900666-70900685 | None:intergenic | 15.0% |
| !!! | TTTAATTTATATACATCAAC+GGG | + | chr6_2:70901098-70901117 | Msa0926810:intron | 15.0% |
| !!! | TGAAATTAATTTTTATGCAT+TGG | - | chr6_2:70901237-70901256 | None:intergenic | 15.0% |
| !!! | TAAAGTCTTCAAATTTATTT+TGG | - | chr6_2:70901940-70901959 | None:intergenic | 15.0% |
| !!! | TTTTTTATCAAGTAACAAAT+AGG | - | chr6_2:70902063-70902082 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGAAATATCGATT+TGG | + | chr6_2:70902075-70902094 | Msa0926810:intron | 15.0% |
| !! | TGAAAATATATAAATGTTTG+TGG | + | chr6_2:70902304-70902323 | Msa0926810:intron | 15.0% |
| !! | AAAGCTACTAAATTATAATA+AGG | - | chr6_2:70902677-70902696 | None:intergenic | 15.0% |
| !! | TTAATTTAACGCTTTACAAT+CGG | + | chr6_2:70899842-70899861 | Msa0926810:intron | 20.0% |
| !! | AAACAAAGTAAGCAATAATT+GGG | - | chr6_2:70900750-70900769 | None:intergenic | 20.0% |
| !! | TAAACAAAGTAAGCAATAAT+TGG | - | chr6_2:70900751-70900770 | None:intergenic | 20.0% |
| !!! | CTTACTTTGTTTAATATAGA+AGG | + | chr6_2:70900758-70900777 | Msa0926810:CDS | 20.0% |
| !! | TTAAATTCTAGATTCCAAAT+TGG | + | chr6_2:70900809-70900828 | Msa0926810:CDS | 20.0% |
| !! | AAATATTATCGACACTATTT+GGG | - | chr6_2:70900922-70900941 | None:intergenic | 20.0% |
| !! | AAAATATTATCGACACTATT+TGG | - | chr6_2:70900923-70900942 | None:intergenic | 20.0% |
| !!! | AAATAGTGTCGATAATATTT+TGG | + | chr6_2:70900922-70900941 | Msa0926810:intron | 20.0% |
| !!! | TTATTTGTTACCTAGTTTTT+TGG | - | chr6_2:70900971-70900990 | None:intergenic | 20.0% |
| !!! | TTTTGTGTAGTTATTGTAAT+TGG | - | chr6_2:70901492-70901511 | None:intergenic | 20.0% |
| !!! | TTTACAATTTTTAACTCTGA+TGG | - | chr6_2:70901855-70901874 | None:intergenic | 20.0% |
| !!! | CAAATTTATTTTGGTTTGTT+TGG | - | chr6_2:70901931-70901950 | None:intergenic | 20.0% |
| !! | TAGGTATTTGTAAAGAATAA+AGG | + | chr6_2:70902002-70902021 | Msa0926810:intron | 20.0% |
| !! | AAAGAATAAAGGTTCAAATT+TGG | + | chr6_2:70902013-70902032 | Msa0926810:intron | 20.0% |
| !!! | ATATATTTTCATTTGTGTAG+TGG | - | chr6_2:70902295-70902314 | None:intergenic | 20.0% |
| !! | CTTGCTTATTCATTAAAAAA+GGG | - | chr6_2:70902703-70902722 | None:intergenic | 20.0% |
| !!! | CTTTTTTAATGAATAAGCAA+GGG | + | chr6_2:70902702-70902721 | Msa0926810:three_prime_UTR | 20.0% |
| ! | TCCTATATATGAATAAGCTA+TGG | + | chr6_2:70899135-70899154 | Msa0926810:five_prime_UTR | 25.0% |
| ! | ACCATAGCTTATTCATATAT+AGG | - | chr6_2:70899139-70899158 | None:intergenic | 25.0% |
| !! | ACTAGTTTGAAGAAAAATAG+AGG | - | chr6_2:70899740-70899759 | None:intergenic | 25.0% |
| ! | TTACAACACAAATCTAACAA+TGG | + | chr6_2:70899908-70899927 | Msa0926810:intron | 25.0% |
| ! | TACAACACAAATCTAACAAT+GGG | + | chr6_2:70899909-70899928 | Msa0926810:intron | 25.0% |
| ! | TTTGATACCATGTTGAAATT+GGG | + | chr6_2:70899981-70900000 | Msa0926810:intron | 25.0% |
| !! | AAGATTTTGAACACAAGATT+CGG | + | chr6_2:70900238-70900257 | Msa0926810:intron | 25.0% |
| ! | GTCTCTTTCAAAGAAAAAAA+AGG | + | chr6_2:70900460-70900479 | Msa0926810:intron | 25.0% |
| ! | TTTATGATTTAATTGAGCAG+AGG | + | chr6_2:70901414-70901433 | Msa0926810:intron | 25.0% |
| ! | CCTTGCTTATTCATTAAAAA+AGG | - | chr6_2:70902704-70902723 | None:intergenic | 25.0% |
| !!! | CCTTTTTTAATGAATAAGCA+AGG | + | chr6_2:70902701-70902720 | Msa0926810:three_prime_UTR | 25.0% |
| ACCACTTGAAAGATAACAAT+TGG | + | chr6_2:70899401-70899420 | Msa0926810:five_prime_UTR | 30.0% | |
| TCCAATTGTTATCTTTCAAG+TGG | - | chr6_2:70899405-70899424 | None:intergenic | 30.0% | |
| ACTTGAAAGATAACAATTGG+AGG | + | chr6_2:70899404-70899423 | Msa0926810:five_prime_UTR | 30.0% | |
| !! | AGTTGTGATGATGGTATTAT+TGG | + | chr6_2:70899450-70899469 | Msa0926810:CDS | 30.0% |
| !! | GTTGTGATGATGGTATTATT+GGG | + | chr6_2:70899451-70899470 | Msa0926810:CDS | 30.0% |
| ! | TCTCCAAGAAAGTTGATTAA+TGG | - | chr6_2:70899500-70899519 | None:intergenic | 30.0% |
| ATCAGCAATATCAATAGCAA+AGG | + | chr6_2:70899523-70899542 | Msa0926810:CDS | 30.0% | |
| AATAGCAAAGGACCATATAT+TGG | + | chr6_2:70899535-70899554 | Msa0926810:CDS | 30.0% | |
| !! | AAGTAAGGAAACTTGTTATG+AGG | - | chr6_2:70899619-70899638 | None:intergenic | 30.0% |
| CAAACTAGTTCAATAGTTTC+TGG | + | chr6_2:70899751-70899770 | Msa0926810:intron | 30.0% | |
| CTTTGATACCATGTTGAAAT+TGG | + | chr6_2:70899980-70899999 | Msa0926810:intron | 30.0% | |
| TTGATACCATGTTGAAATTG+GGG | + | chr6_2:70899982-70900001 | Msa0926810:intron | 30.0% | |
| CTAACTCATCGTTACAAAAT+TGG | + | chr6_2:70900006-70900025 | Msa0926810:intron | 30.0% | |
| !! | AGGCACCTTAATATTTTTGT+TGG | - | chr6_2:70900186-70900205 | None:intergenic | 30.0% |
| ! | ATATTAAGGTGCCTTTGATA+TGG | + | chr6_2:70900192-70900211 | Msa0926810:intron | 30.0% |
| ! | ACAATGTAGGAAGACATTTT+CGG | + | chr6_2:70900560-70900579 | Msa0926810:intron | 30.0% |
| AAGGTTATTGTTGTAATGAC+TGG | + | chr6_2:70900604-70900623 | Msa0926810:CDS | 30.0% | |
| ! | GAAGTTTAAGTAAAGGCATA+AGG | - | chr6_2:70900659-70900678 | None:intergenic | 30.0% |
| ATAGAAGGAGTTCTACATTA+TGG | + | chr6_2:70900773-70900792 | Msa0926810:CDS | 30.0% | |
| !!! | TGTCGATAATATTTTGGCAT+GGG | + | chr6_2:70900928-70900947 | Msa0926810:intron | 30.0% |
| !!! | ATAATATTTTGGCATGGGAA+TGG | + | chr6_2:70900933-70900952 | Msa0926810:intron | 30.0% |
| !!! | TAATATTTTGGCATGGGAAT+GGG | + | chr6_2:70900934-70900953 | Msa0926810:intron | 30.0% |
| AGAATACTATCCAACCAAAT+TGG | + | chr6_2:70900990-70901009 | Msa0926810:intron | 30.0% | |
| CATTTGTATCAAATCACATC+AGG | + | chr6_2:70901135-70901154 | Msa0926810:intron | 30.0% | |
| CATAATTAGCGTGATCAAAT+TGG | + | chr6_2:70901184-70901203 | Msa0926810:intron | 30.0% | |
| TTGATACACCAATCTATTGA+CGG | + | chr6_2:70901280-70901299 | Msa0926810:intron | 30.0% | |
| AAAATCTGTTGAACAAGGTT+TGG | + | chr6_2:70901528-70901547 | Msa0926810:CDS | 30.0% | |
| !! | TCAAAGTAAGTTTTGTCAAC+TGG | - | chr6_2:70901620-70901639 | None:intergenic | 30.0% |
| AACAAACACTCATAATGAGA+CGG | - | chr6_2:70901682-70901701 | None:intergenic | 30.0% | |
| TCTCATTATGAGTGTTTGTT+TGG | + | chr6_2:70901682-70901701 | Msa0926810:intron | 30.0% | |
| !! | TCGATTTGGTCATTATATTG+AGG | + | chr6_2:70902089-70902108 | Msa0926810:intron | 30.0% |
| !! | CGATTTGGTCATTATATTGA+GGG | + | chr6_2:70902090-70902109 | Msa0926810:intron | 30.0% |
| ATGAATCGTTCAATCAAGAT+TGG | - | chr6_2:70902231-70902250 | None:intergenic | 30.0% | |
| TAGTGGCTGAAATAAGATTT+GGG | - | chr6_2:70902278-70902297 | None:intergenic | 30.0% | |
| ! | TTTGTTGTCAACAAACACAT+TGG | - | chr6_2:70902437-70902456 | None:intergenic | 30.0% |
| !!! | CAATGAAAGGTATTTTGTGT+TGG | - | chr6_2:70902540-70902559 | None:intergenic | 30.0% |
| TAAATCAGACAATGCTCTAA+TGG | - | chr6_2:70902563-70902582 | None:intergenic | 30.0% | |
| AATAGATACTTCATTGCTCA+AGG | - | chr6_2:70902602-70902621 | None:intergenic | 30.0% | |
| ! | AACATCAAATGCATTTTGAG+AGG | - | chr6_2:70902638-70902657 | None:intergenic | 30.0% |
| TTTAATAAGAGAGTCAGAGC+TGG | + | chr6_2:70899179-70899198 | Msa0926810:five_prime_UTR | 35.0% | |
| AGATAACAATTGGAGGAGAA+TGG | + | chr6_2:70899411-70899430 | Msa0926810:exon | 35.0% | |
| ! | GTGCCATTAATCAACTTTCT+TGG | + | chr6_2:70899494-70899513 | Msa0926810:CDS | 35.0% |
| GGCACAACTATACCAATATA+TGG | - | chr6_2:70899550-70899569 | None:intergenic | 35.0% | |
| ! | AGCTTGATGATTGAAGAAGA+GGG | - | chr6_2:70899591-70899610 | None:intergenic | 35.0% |
| ! | AAGCTTGATGATTGAAGAAG+AGG | - | chr6_2:70899592-70899611 | None:intergenic | 35.0% |
| ! | TTTCCTTACTTTGACTTTGC+TGG | + | chr6_2:70899628-70899647 | Msa0926810:CDS | 35.0% |
| TTACCAGCAAAGTCAAAGTA+AGG | - | chr6_2:70899634-70899653 | None:intergenic | 35.0% | |
| AAATAGAGGCAGAAAGATGA+AGG | - | chr6_2:70899726-70899745 | None:intergenic | 35.0% | |
| ! | AGTTTGAAATACTCGACTGT+TGG | + | chr6_2:70899795-70899814 | Msa0926810:intron | 35.0% |
| !! | CGTTACAAAATTGGTTCGTA+AGG | + | chr6_2:70900015-70900034 | Msa0926810:intron | 35.0% |
| TTTCTCGACTACCATATCAA+AGG | - | chr6_2:70900206-70900225 | None:intergenic | 35.0% | |
| ATGGTAGTCGAGAAATTATG+TGG | + | chr6_2:70900211-70900230 | Msa0926810:intron | 35.0% | |
| TAGAAAAGATTGAACGCTAG+AGG | - | chr6_2:70900362-70900381 | None:intergenic | 35.0% | |
| TTTCGTAAACTCGACAATGT+AGG | + | chr6_2:70900547-70900566 | Msa0926810:intron | 35.0% | |
| TGGCGAATTGGAAAAGAAAA+AGG | + | chr6_2:70900585-70900604 | Msa0926810:CDS | 35.0% | |
| GTTCTACATTATGGAATTGC+AGG | + | chr6_2:70900782-70900801 | Msa0926810:CDS | 35.0% | |
| GAATTGTCACATCTCCAATT+TGG | - | chr6_2:70900826-70900845 | None:intergenic | 35.0% | |
| ATGTGACAATTCCACAGTAT+TGG | + | chr6_2:70900834-70900853 | Msa0926810:CDS | 35.0% | |
| TGTGACAATTCCACAGTATT+GGG | + | chr6_2:70900835-70900854 | Msa0926810:CDS | 35.0% | |
| !!! | GTGTCGATAATATTTTGGCA+TGG | + | chr6_2:70900927-70900946 | Msa0926810:intron | 35.0% |
| ! | TTTTGACACCGTCAATAGAT+TGG | - | chr6_2:70901291-70901310 | None:intergenic | 35.0% |
| GATTTAATTGAGCAGAGGTT+TGG | + | chr6_2:70901419-70901438 | Msa0926810:intron | 35.0% | |
| TGGAGATTTCAGAACAGAAT+TGG | + | chr6_2:70901451-70901470 | Msa0926810:CDS | 35.0% | |
| GGAGATTTCAGAACAGAATT+GGG | + | chr6_2:70901452-70901471 | Msa0926810:CDS | 35.0% | |
| CACAAAACATTCCAAATCAG+AGG | + | chr6_2:70901505-70901524 | Msa0926810:CDS | 35.0% | |
| ! | CAACAGATTTTCCTCTGATT+TGG | - | chr6_2:70901519-70901538 | None:intergenic | 35.0% |
| AGAGGAAAATCTGTTGAACA+AGG | + | chr6_2:70901523-70901542 | Msa0926810:CDS | 35.0% | |
| TCAACAGGAAAAATTCTCTC+TGG | - | chr6_2:70901560-70901579 | None:intergenic | 35.0% | |
| ! | GAGAGAATTTTTCCTGTTGA+TGG | + | chr6_2:70901560-70901579 | Msa0926810:CDS | 35.0% |
| TTGATGGAACTCCTGAAATT+TGG | + | chr6_2:70901576-70901595 | Msa0926810:CDS | 35.0% | |
| TGAAATTGCAAGAAAGCTCA+AGG | + | chr6_2:70901637-70901656 | Msa0926810:CDS | 35.0% | |
| TCATAATGAGACGGTCAATT+GGG | - | chr6_2:70901673-70901692 | None:intergenic | 35.0% | |
| !!! | GAGTGTTTGTTTGGTTTTTG+CGG | + | chr6_2:70901691-70901710 | Msa0926810:intron | 35.0% |
| ! | AGTAAATCCAAACACTGACT+AGG | + | chr6_2:70901983-70902002 | Msa0926810:intron | 35.0% |
| ACAAATACCTAGTCAGTGTT+TGG | - | chr6_2:70901993-70902012 | None:intergenic | 35.0% | |
| GTAGTGGCTGAAATAAGATT+TGG | - | chr6_2:70902279-70902298 | None:intergenic | 35.0% | |
| TTCGACATTCTGTAGAGAAT+AGG | - | chr6_2:70902341-70902360 | None:intergenic | 35.0% | |
| AATGCTCTAATGGCAATGAA+AGG | - | chr6_2:70902553-70902572 | None:intergenic | 35.0% | |
| ATGCACACACATCATACACA+TGG | - | chr6_2:70899361-70899380 | None:intergenic | 40.0% | |
| AGGAGAATGGAGTTTCTTCT+AGG | + | chr6_2:70899424-70899443 | Msa0926810:exon | 40.0% | |
| TCTAGGTGTAGTTGTGATGA+TGG | + | chr6_2:70899441-70899460 | Msa0926810:CDS | 40.0% | |
| GGAAGTAGCATCAATGCTTA+TGG | + | chr6_2:70899472-70899491 | Msa0926810:CDS | 40.0% | |
| GGGTTCAACTCAAATGCATT+TGG | - | chr6_2:70899571-70899590 | None:intergenic | 40.0% | |
| !! | TAGTTTCTGGTGATGAGTAC+TGG | + | chr6_2:70899764-70899783 | Msa0926810:intron | 40.0% |
| ! | CTAACAATGGGTCTGAAGTA+TGG | + | chr6_2:70899921-70899940 | Msa0926810:intron | 40.0% |
| CCTATTCTACATCTACTGCT+GGG | - | chr6_2:70899960-70899979 | None:intergenic | 40.0% | |
| GTTAGACCCCAATTTCAACA+TGG | - | chr6_2:70899991-70900010 | None:intergenic | 40.0% | |
| ACATCCTCAAAACCAACACA+AGG | + | chr6_2:70900104-70900123 | Msa0926810:intron | 40.0% | |
| GCAGCTCAATTGTTGCAAAT+AGG | + | chr6_2:70900126-70900145 | Msa0926810:intron | 40.0% | |
| GCTCAATTGTTGCAAATAGG+CGG | + | chr6_2:70900129-70900148 | Msa0926810:intron | 40.0% | |
| ATTGTTGCAAATAGGCGGAT+AGG | + | chr6_2:70900134-70900153 | Msa0926810:intron | 40.0% | |
| TTGTTGCAAATAGGCGGATA+GGG | + | chr6_2:70900135-70900154 | Msa0926810:intron | 40.0% | |
| CGCTAGAGGAAAATACTTAG+TGG | - | chr6_2:70900348-70900367 | None:intergenic | 40.0% | |
| ! | GTAGGAAGACATTTTCGGAT+TGG | + | chr6_2:70900565-70900584 | Msa0926810:intron | 40.0% |
| !!! | ACATTTTCGGATTGGCGAAT+TGG | + | chr6_2:70900573-70900592 | Msa0926810:CDS | 40.0% |
| TGTAATGACTGGAGAGAGTA+TGG | + | chr6_2:70900615-70900634 | Msa0926810:CDS | 40.0% | |
| ! | CTTTTTGTGCAGCTAAATGC+AGG | + | chr6_2:70900716-70900735 | Msa0926810:intron | 40.0% |
| ! | ATGGGGCATTCCAAAAAACT+AGG | + | chr6_2:70900958-70900977 | Msa0926810:intron | 40.0% |
| AGCACTTTGACCAATTTGGT+TGG | - | chr6_2:70901003-70901022 | None:intergenic | 40.0% | |
| TGGTAGCACTTTGACCAATT+TGG | - | chr6_2:70901007-70901026 | None:intergenic | 40.0% | |
| ATTTCAGGAGTTCCATCAAC+AGG | - | chr6_2:70901575-70901594 | None:intergenic | 40.0% | |
| !! | AAATTTGGCAGCCTGCTTTT+TGG | + | chr6_2:70901591-70901610 | Msa0926810:CDS | 40.0% |
| !!! | AATTTGGCAGCCTGCTTTTT+GGG | + | chr6_2:70901592-70901611 | Msa0926810:CDS | 40.0% |
| CATAATGAGACGGTCAATTG+GGG | - | chr6_2:70901672-70901691 | None:intergenic | 40.0% | |
| CTCATAATGAGACGGTCAAT+TGG | - | chr6_2:70901674-70901693 | None:intergenic | 40.0% | |
| TTGAACGATTCATGTGCGAT+TGG | + | chr6_2:70902238-70902257 | Msa0926810:intron | 40.0% | |
| TTCTTTACTCTCGCCACAAT+AGG | - | chr6_2:70902403-70902422 | None:intergenic | 40.0% | |
| ATTGTGGCGAGAGTAAAGAA+AGG | + | chr6_2:70902403-70902422 | Msa0926810:CDS | 40.0% | |
| TTGTGGCGAGAGTAAAGAAA+GGG | + | chr6_2:70902404-70902423 | Msa0926810:CDS | 40.0% | |
| !! | AGAGCATTGTCTGATTTAGC+TGG | + | chr6_2:70902565-70902584 | Msa0926810:CDS | 40.0% |
| ATAAGAGAGTCAGAGCTGGT+AGG | + | chr6_2:70899183-70899202 | Msa0926810:five_prime_UTR | 45.0% | |
| AGTCAGAGCTGGTAGGATAT+GGG | + | chr6_2:70899190-70899209 | Msa0926810:five_prime_UTR | 45.0% | |
| TAGGATATGGGCGTATTCTC+TGG | + | chr6_2:70899202-70899221 | Msa0926810:five_prime_UTR | 45.0% | |
| CCCAGCAGTAGATGTAGAAT+AGG | + | chr6_2:70899957-70899976 | Msa0926810:intron | 45.0% | |
| GCCTATTCTACATCTACTGC+TGG | - | chr6_2:70899961-70899980 | None:intergenic | 45.0% | |
| ACAATTGAGCTGCCTTGTGT+TGG | - | chr6_2:70900119-70900138 | None:intergenic | 45.0% | |
| ! | TTTTGGCATGGGAATGGGTA+TGG | + | chr6_2:70900939-70900958 | Msa0926810:intron | 45.0% |
| TTTGGCATGGGAATGGGTAT+GGG | + | chr6_2:70900940-70900959 | Msa0926810:intron | 45.0% | |
| !! | CAGAGGTTTGGTGAAGACAT+TGG | + | chr6_2:70901431-70901450 | Msa0926810:intron | 45.0% |
| AAAGCAGGCTGCCAAATTTC+AGG | - | chr6_2:70901590-70901609 | None:intergenic | 45.0% | |
| TCAACTGGAACCCAAAAAGC+AGG | - | chr6_2:70901605-70901624 | None:intergenic | 45.0% | |
| TGTGACTGCCTGAAGTTAGT+TGG | + | chr6_2:70902130-70902149 | Msa0926810:intron | 45.0% | |
| ACTGCCTGAAGTTAGTTGGA+CGG | + | chr6_2:70902134-70902153 | Msa0926810:intron | 45.0% | |
| TAGACCGTCCAACTAACTTC+AGG | - | chr6_2:70902141-70902160 | None:intergenic | 45.0% | |
| CTTGCCAAGAAAGCCTATTG+TGG | + | chr6_2:70902387-70902406 | Msa0926810:CDS | 45.0% | |
| TGTGGCGAGAGTAAAGAAAG+GGG | + | chr6_2:70902405-70902424 | Msa0926810:CDS | 45.0% | |
| TGATGCTACTCCAACAGACA+TGG | + | chr6_2:70902486-70902505 | Msa0926810:CDS | 45.0% | |
| GCATTGTCTGATTTAGCTGG+AGG | + | chr6_2:70902568-70902587 | Msa0926810:CDS | 45.0% | |
| TTGTCTGATTTAGCTGGAGG+AGG | + | chr6_2:70902571-70902590 | Msa0926810:CDS | 45.0% | |
| TAAGCAAGGGTCGTTATGAG+AGG | + | chr6_2:70902715-70902734 | Msa0926810:three_prime_UTR | 45.0% | |
| AAGCAAGGGTCGTTATGAGA+GGG | + | chr6_2:70902716-70902735 | Msa0926810:three_prime_UTR | 45.0% | |
| !!! | AATTAAATTCATTTAATTTT+TGG | - | chr6_2:70901085-70901104 | None:intergenic | 5.0% |
| GAGTCAGAGCTGGTAGGATA+TGG | + | chr6_2:70899189-70899208 | Msa0926810:five_prime_UTR | 50.0% | |
| !!! | GCTGCCTTGTGTTGGTTTTG+AGG | - | chr6_2:70900111-70900130 | None:intergenic | 50.0% |
| TGCAAATAGGCGGATAGGGA+CGG | + | chr6_2:70900139-70900158 | Msa0926810:intron | 50.0% | |
| ATTGGGCACACACAGGACTT+TGG | + | chr6_2:70900852-70900871 | Msa0926810:CDS | 50.0% | |
| CACACACAGGACTTTGGCAT+TGG | + | chr6_2:70900858-70900877 | Msa0926810:CDS | 50.0% | |
| TTGGCATGGGAATGGGTATG+GGG | + | chr6_2:70900941-70900960 | Msa0926810:intron | 50.0% | |
| CTCGCCACAATAGGCTTTCT+TGG | - | chr6_2:70902394-70902413 | None:intergenic | 50.0% | |
| GCAGCACTTTCCATGTCTGT+TGG | - | chr6_2:70902499-70902518 | None:intergenic | 50.0% | |
| CCTGTGTGTGCCCAATACTG+TGG | - | chr6_2:70900848-70900867 | None:intergenic | 55.0% | |
| ! | CCACAGTATTGGGCACACAC+AGG | + | chr6_2:70900845-70900864 | Msa0926810:CDS | 55.0% |
| !! | CACAGGACTTTGGCATTGGC+AGG | + | chr6_2:70900862-70900881 | Msa0926810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 70899092 | 70902855 | 70899092 | ID=Msa0926810;Name=Msa0926810 |
| chr6_2 | mRNA | 70899092 | 70902855 | 70899092 | ID=Msa0926810-mRNA-1;Parent=Msa0926810;Name=Msa0926810-mRNA-1;_AED=0.30;_eAED=0.30;_QI=338|1|1|1|1|1|5|171|333 |
| chr6_2 | exon | 70899092 | 70899649 | 70899092 | ID=Msa0926810-mRNA-1:exon:11674;Parent=Msa0926810-mRNA-1 |
| chr6_2 | exon | 70900569 | 70900636 | 70900569 | ID=Msa0926810-mRNA-1:exon:11675;Parent=Msa0926810-mRNA-1 |
| chr6_2 | exon | 70900728 | 70900883 | 70900728 | ID=Msa0926810-mRNA-1:exon:11676;Parent=Msa0926810-mRNA-1 |
| chr6_2 | exon | 70901434 | 70901658 | 70901434 | ID=Msa0926810-mRNA-1:exon:11677;Parent=Msa0926810-mRNA-1 |
| chr6_2 | exon | 70902352 | 70902855 | 70902352 | ID=Msa0926810-mRNA-1:exon:11678;Parent=Msa0926810-mRNA-1 |
| chr6_2 | five_prime_UTR | 70899092 | 70899429 | 70899092 | ID=Msa0926810-mRNA-1:five_prime_utr;Parent=Msa0926810-mRNA-1 |
| chr6_2 | CDS | 70899430 | 70899649 | 70899430 | ID=Msa0926810-mRNA-1:cds;Parent=Msa0926810-mRNA-1 |
| chr6_2 | CDS | 70900569 | 70900636 | 70900569 | ID=Msa0926810-mRNA-1:cds;Parent=Msa0926810-mRNA-1 |
| chr6_2 | CDS | 70900728 | 70900883 | 70900728 | ID=Msa0926810-mRNA-1:cds;Parent=Msa0926810-mRNA-1 |
| chr6_2 | CDS | 70901434 | 70901658 | 70901434 | ID=Msa0926810-mRNA-1:cds;Parent=Msa0926810-mRNA-1 |
| chr6_2 | CDS | 70902352 | 70902684 | 70902352 | ID=Msa0926810-mRNA-1:cds;Parent=Msa0926810-mRNA-1 |
| chr6_2 | three_prime_UTR | 70902685 | 70902855 | 70902685 | ID=Msa0926810-mRNA-1:three_prime_utr;Parent=Msa0926810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
