AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165460 MtrunA17_Chr7g0269991 96.632 475 11 1 1 475 1 470 0.0 955
Msa1165460 MtrunA17_Chr4g0071391 50.733 341 161 3 139 472 106 446 1.06e-127 378
Msa1165460 MtrunA17_Chr7g0258851 44.548 431 211 7 66 475 167 590 5.60e-127 381
Msa1165460 MtrunA17_Chr1g0175671 46.366 399 196 5 86 472 117 509 6.50e-125 374
Msa1165460 MtrunA17_Chr1g0213281 49.123 342 162 4 142 472 175 515 4.44e-124 372
Msa1165460 MtrunA17_Chr8g0368461 46.076 395 185 5 106 472 134 528 8.05e-124 371
Msa1165460 MtrunA17_Chr5g0413271 40.798 451 224 8 38 472 53 476 1.38e-118 356
Msa1165460 MtrunA17_Chr4g0068111 47.965 344 162 5 139 469 111 450 6.13e-118 353
Msa1165460 MtrunA17_Chr7g0259711 48.986 345 165 3 142 475 91 435 3.58e-110 333
Msa1165460 MtrunA17_Chr2g0287901 47.647 340 164 4 142 469 97 434 5.90e-107 325
Msa1165460 MtrunA17_Chr3g0126021 42.941 340 182 5 142 475 129 462 8.08e-99 305
Msa1165460 MtrunA17_Chr8g0384151 40.356 337 193 3 138 472 86 416 1.01e-88 278
Msa1165460 MtrunA17_Chr5g0430371 38.527 353 184 8 142 472 58 399 2.40e-86 270
Msa1165460 MtrunA17_Chr1g0171171 38.576 337 183 7 140 468 51 371 3.63e-86 269
Msa1165460 MtrunA17_Chr1g0210771 37.092 337 189 5 140 468 57 378 5.38e-86 269
Msa1165460 MtrunA17_Chr3g0105301 38.304 342 186 8 142 469 43 373 1.25e-84 265
Msa1165460 MtrunA17_Chr3g0097891 40.299 335 181 8 142 472 31 350 1.34e-82 259
Msa1165460 MtrunA17_Chr2g0314801 42.090 335 174 9 140 469 31 350 3.81e-82 258
Msa1165460 MtrunA17_Chr5g0413851 39.169 337 184 8 140 472 40 359 2.64e-81 256
Msa1165460 MtrunA17_Chr4g0006991 37.892 351 193 8 140 472 84 427 3.41e-81 258
Msa1165460 MtrunA17_Chr2g0325481 39.349 338 181 8 136 468 44 362 6.35e-81 255
Msa1165460 MtrunA17_Chr2g0283581 38.576 337 189 7 138 472 38 358 2.37e-80 253
Msa1165460 MtrunA17_Chr3g0085071 38.323 334 185 9 140 469 44 360 8.57e-80 252
Msa1165460 MtrunA17_Chr4g0041011 35.389 373 205 9 108 472 19 363 2.16e-79 251
Msa1165460 MtrunA17_Chr1g0178081 39.067 343 147 7 139 472 52 341 1.68e-78 249
Msa1165460 MtrunA17_Chr3g0085081 35.799 338 198 6 140 474 29 350 2.74e-78 248
Msa1165460 MtrunA17_Chr3g0091031 35.207 338 200 6 140 474 29 350 1.46e-77 246
Msa1165460 MtrunA17_Chr4g0005491 37.151 358 198 8 139 475 59 410 2.92e-77 247
Msa1165460 MtrunA17_Chr2g0314791 37.971 345 180 10 138 472 25 345 1.15e-76 243
Msa1165460 MtrunA17_Chr4g0045951 36.716 335 195 6 136 468 39 358 1.82e-76 243
Msa1165460 MtrunA17_Chr7g0243301 37.746 355 196 8 141 475 63 412 4.50e-76 244
Msa1165460 MtrunA17_Chr4g0045941 38.298 329 186 7 142 468 33 346 7.88e-75 239
Msa1165460 MtrunA17_Chr5g0437291 38.268 358 187 11 140 472 163 511 5.03e-74 242
Msa1165460 MtrunA17_Chr3g0113671 36.901 355 187 10 140 469 104 446 1.47e-71 233
Msa1165460 MtrunA17_Chr8g0360521 34.903 361 193 10 137 472 66 409 5.07e-71 231
Msa1165460 MtrunA17_Chr4g0005481 37.183 355 187 8 140 472 106 446 8.09e-70 229
Msa1165460 MtrunA17_Chr3g0114101 37.360 356 184 10 142 472 89 430 3.54e-69 227
Msa1165460 MtrunA17_Chr5g0437601 36.842 361 193 10 135 472 76 424 5.19e-69 226
Msa1165460 MtrunA17_Chr7g0242701 36.827 353 194 10 140 472 84 427 4.37e-68 224
Msa1165460 MtrunA17_Chr6g0476041 28.958 518 294 19 6 469 14 511 1.51e-56 196
Msa1165460 MtrunA17_Chr1g0209921 38.912 239 129 7 140 375 42 266 1.40e-50 173
Msa1165460 MtrunA17_Chr1g0188191 31.707 369 187 14 142 469 234 578 4.93e-50 179
Msa1165460 MtrunA17_Chr6g0455901 31.215 362 206 12 142 474 71 418 4.27e-49 173
Msa1165460 MtrunA17_Chr4g0049421 30.595 353 207 10 142 468 48 388 6.88e-48 169
Msa1165460 MtrunA17_Chr4g0070341 30.812 357 208 10 140 472 130 471 7.27e-47 169
Msa1165460 MtrunA17_Chr6g0456691 32.782 363 199 11 139 473 75 420 4.94e-46 166
Msa1165460 MtrunA17_Chr2g0283851 31.768 362 215 11 135 472 47 400 6.85e-45 162
Msa1165460 MtrunA17_Chr8g0347321 30.769 364 208 13 140 474 93 441 2.50e-44 161
Msa1165460 MtrunA17_Chr8g0391481 30.400 375 214 13 131 474 16 374 4.42e-44 159
Msa1165460 MtrunA17_Chr8g0384421 30.114 352 217 10 140 472 131 472 5.60e-44 160
Msa1165460 MtrunA17_Chr6g0456681 31.680 363 204 11 140 473 62 409 1.03e-43 159
Msa1165460 MtrunA17_Chr6g0451321 30.556 360 209 14 140 473 114 458 6.93e-43 158
Msa1165460 MtrunA17_Chr5g0414091 31.522 368 203 16 140 475 83 433 4.34e-42 155
Msa1165460 MtrunA17_Chr3g0140371 30.423 355 205 12 142 469 18 357 2.06e-41 151
Msa1165460 MtrunA17_Chr7g0226991 29.076 368 208 12 136 469 51 399 3.73e-41 152
Msa1165460 MtrunA17_Chr8g0387921 29.692 357 208 12 141 468 73 415 1.31e-40 150
Msa1165460 MtrunA17_Chr5g0414051 29.805 359 205 12 142 469 75 417 5.17e-40 149
Msa1165460 MtrunA17_Chr5g0414061 29.692 357 209 13 141 469 93 435 1.93e-39 148
Msa1165460 MtrunA17_Chr5g0414041 30.899 356 206 13 142 469 87 430 1.81e-36 139
Msa1165460 MtrunA17_Chr2g0287931 50.400 125 60 1 202 324 2 126 4.71e-36 129
Msa1165460 MtrunA17_Chr7g0221291 45.055 91 50 0 140 230 77 167 5.76e-24 98.2
Msa1165460 MtrunA17_Chr7g0221271 45.098 102 55 1 139 240 76 176 1.03e-23 98.6
Msa1165460 MtrunA17_Chr3g0085101 36.634 101 61 2 343 440 6 106 1.44e-19 84.3
Msa1165460 MtrunA17_Chr1g0209931 47.059 85 39 4 386 469 10 89 8.22e-19 81.6
Msa1165460 MtrunA17_Chr7g0221281 27.426 237 140 8 262 473 8 237 3.44e-16 78.6
Msa1165460 MtrunA17_Chr2g0287911 54.386 57 19 1 141 197 60 109 5.60e-16 73.9
Msa1165460 MtrunA17_Chr5g0414081 27.320 194 116 7 306 475 10 202 2.64e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165460 AT3G62390.1 58.125 480 184 7 1 472 1 471 0.0 577
Msa1165460 AT3G62390.2 57.179 390 153 6 1 385 1 381 1.78e-154 446
Msa1165460 AT3G12060.1 49.749 398 183 7 91 472 139 535 1.32e-131 392
Msa1165460 AT5G20590.1 42.138 477 256 9 11 472 8 479 7.28e-130 385
Msa1165460 AT5G06700.1 51.453 344 156 4 139 472 252 594 5.26e-128 385
Msa1165460 AT1G60790.1 44.889 450 218 10 49 472 87 532 1.72e-126 379
Msa1165460 AT5G49340.1 48.703 347 167 5 137 472 95 441 7.32e-119 356
Msa1165460 AT5G19160.1 50.000 348 149 5 142 469 99 441 1.42e-112 340
Msa1165460 AT3G06080.2 48.235 340 164 3 142 469 103 442 1.20e-110 335
Msa1165460 AT5G06230.2 43.840 349 181 6 138 472 17 364 9.01e-97 296
Msa1165460 AT5G06230.1 43.840 349 181 6 138 472 58 405 2.34e-96 297
Msa1165460 AT1G48880.1 41.840 337 180 5 141 472 114 439 1.98e-95 295
Msa1165460 AT3G11570.1 45.511 323 167 5 158 472 98 419 2.03e-94 292
Msa1165460 AT5G20590.2 39.628 376 213 7 11 377 8 378 2.11e-88 275
Msa1165460 AT1G29050.1 40.541 333 181 5 142 472 61 378 9.48e-88 273
Msa1165460 AT5G19160.2 54.202 238 107 1 142 377 99 336 1.02e-87 272
Msa1165460 AT2G34070.1 37.772 368 202 8 111 472 37 383 1.09e-84 266
Msa1165460 AT3G06080.1 52.521 238 111 1 142 377 103 340 5.41e-84 263
Msa1165460 AT2G30010.1 39.489 352 181 7 142 472 56 396 7.80e-83 261
Msa1165460 AT2G30010.2 39.489 352 181 7 142 472 99 439 1.28e-82 262
Msa1165460 AT3G54260.1 37.870 338 181 7 142 468 51 370 2.79e-82 259
Msa1165460 AT1G78710.1 37.822 349 199 8 127 472 23 356 6.45e-82 258
Msa1165460 AT2G30900.1 38.757 338 189 8 140 472 41 365 1.40e-81 257
Msa1165460 AT2G42570.1 37.952 332 188 7 141 470 46 361 9.08e-81 255
Msa1165460 AT5G58600.1 37.572 346 184 9 142 469 66 397 5.48e-80 254
Msa1165460 AT2G31110.2 34.565 379 222 8 96 472 8 362 4.16e-79 251
Msa1165460 AT2G40150.1 38.567 363 186 11 141 475 70 423 4.60e-78 250
Msa1165460 AT1G73140.1 36.623 385 202 12 116 472 35 405 1.12e-77 249
Msa1165460 AT2G40160.2 36.769 359 193 9 142 475 77 426 1.57e-76 246
Msa1165460 AT2G40160.1 36.517 356 192 9 142 472 77 423 2.65e-76 245
Msa1165460 AT3G14850.2 38.576 337 185 8 142 472 34 354 5.44e-76 242
Msa1165460 AT2G38320.1 36.872 358 191 11 140 472 57 404 2.05e-74 240
Msa1165460 AT3G55990.1 35.577 416 226 12 89 475 84 486 7.50e-74 241
Msa1165460 AT5G01360.2 35.411 353 200 9 140 472 34 378 1.60e-73 237
Msa1165460 AT5G01360.1 35.411 353 200 9 140 472 90 434 4.82e-73 237
Msa1165460 AT5G01620.2 35.933 359 199 9 134 472 102 449 1.14e-69 229
Msa1165460 AT5G01620.1 35.933 359 199 9 134 472 102 449 1.14e-69 229
Msa1165460 AT5G01620.3 35.933 359 199 9 134 472 110 457 1.35e-69 229
Msa1165460 AT5G06230.3 43.825 251 133 2 138 380 58 308 1.08e-67 219
Msa1165460 AT3G11030.1 35.180 361 200 9 135 472 99 448 4.15e-67 222
Msa1165460 AT2G40320.1 34.688 369 209 10 124 472 66 422 1.57e-64 214
Msa1165460 AT2G38320.2 35.650 331 179 10 166 472 1 321 2.45e-63 209
Msa1165460 AT1G78710.2 32.759 348 165 9 127 472 16 296 6.54e-59 196
Msa1165460 AT5G58600.2 39.149 235 131 5 142 375 66 289 1.39e-56 190
Msa1165460 AT2G34070.2 36.704 267 145 7 212 472 1 249 1.53e-54 183
Msa1165460 AT2G30900.2 39.316 234 130 5 140 372 41 263 3.09e-54 183
Msa1165460 AT5G64470.3 33.908 348 197 14 142 468 55 390 2.71e-52 182
Msa1165460 AT2G31110.3 33.455 275 162 5 96 370 8 261 3.24e-52 177
Msa1165460 AT5G51640.1 30.390 385 208 12 125 469 121 485 1.45e-51 182
Msa1165460 AT5G64470.2 33.711 353 197 15 142 468 55 396 1.60e-51 180
Msa1165460 AT2G40160.3 36.327 245 138 6 142 377 77 312 2.97e-51 176
Msa1165460 AT4G25360.1 31.733 375 197 15 134 469 167 521 3.94e-51 182
Msa1165460 AT4G25360.2 31.733 375 197 15 134 469 167 521 3.94e-51 182
Msa1165460 AT1G01430.1 33.333 375 204 15 133 475 90 450 3.20e-49 175
Msa1165460 AT3G14850.1 36.704 267 147 8 212 472 1 251 7.75e-49 168
Msa1165460 AT1G70230.1 33.428 353 195 13 142 473 79 412 1.15e-48 172
Msa1165460 AT2G14530.1 30.028 363 210 14 135 468 55 402 3.25e-48 171
Msa1165460 AT5G20680.6 30.115 435 256 16 57 469 46 454 1.30e-46 168
Msa1165460 AT5G20680.2 30.115 435 256 16 57 469 122 530 2.39e-46 169
Msa1165460 AT5G20680.4 30.115 435 256 16 57 469 140 548 2.92e-46 169
Msa1165460 AT5G20680.1 30.115 435 256 16 57 469 140 548 2.92e-46 169
Msa1165460 AT5G20680.3 30.115 435 256 16 57 469 140 548 2.92e-46 169
Msa1165460 AT5G20680.5 30.115 435 256 16 57 469 140 548 2.92e-46 169
Msa1165460 AT3G28150.1 31.638 354 208 10 137 468 65 406 3.68e-46 166
Msa1165460 AT5G15890.1 29.587 436 257 16 59 469 109 519 1.37e-45 167
Msa1165460 AT4G23790.1 31.746 378 216 14 120 469 61 424 6.13e-45 163
Msa1165460 AT3G02440.1 30.168 358 213 9 142 475 127 471 1.11e-44 163
Msa1165460 AT3G02440.2 30.168 358 213 9 142 475 135 479 1.27e-44 163
Msa1165460 AT5G64020.1 29.132 357 222 11 142 472 57 408 4.28e-44 160
Msa1165460 AT4G01080.1 30.726 358 211 11 141 475 90 433 6.24e-44 160
Msa1165460 AT2G31110.1 35.514 214 128 5 261 472 9 214 4.77e-42 149
Msa1165460 AT4G11090.1 29.250 400 239 14 98 469 39 422 3.32e-41 152
Msa1165460 AT5G15900.2 30.423 355 213 11 142 473 86 429 8.29e-40 149
Msa1165460 AT5G15900.1 30.423 355 213 11 142 473 67 410 8.61e-40 149
Msa1165460 AT2G37720.1 30.726 358 209 13 139 472 140 482 1.70e-36 140
Msa1165460 AT5G64470.4 32.342 269 157 12 142 396 55 312 8.46e-34 130
Msa1165460 AT5G64470.1 32.222 270 158 12 142 397 55 313 1.08e-33 130

Find 102 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGGATAAATGGTATTTA+AGG 0.130435 7_4:+57359395 None:intergenic
GAACTATAGTTTCAGGTTTC+TGG 0.139405 7_4:-57361054 Msa1165460:intron
TTCCCATTGGTTCCTATTAA+TGG 0.150183 7_4:+57361163 None:intergenic
TCCTTTCATCTTTCACTATC+TGG 0.168937 7_4:-57362373 Msa1165460:CDS
CCTTGGAAGGTCACAATCTT+TGG 0.179023 7_4:+57361887 None:intergenic
TAACTAGTTTGTCAGAATTT+AGG 0.182487 7_4:-57359311 Msa1165460:CDS
TATATTCTTCTCAGGATAAA+TGG 0.237473 7_4:+57359386 None:intergenic
GTTCAGCACCATCTCATTTC+AGG 0.238683 7_4:-57359780 Msa1165460:intron
GATGGCCACCCATCCATTTA+TGG 0.239886 7_4:-57359285 Msa1165460:CDS
AGAAGCCAAAAGAATGTTTC+AGG 0.248012 7_4:-57362218 Msa1165460:CDS
ATGGAGAGGAGCTGATATTT+TGG 0.261754 7_4:-57360820 Msa1165460:CDS
TCAAAACCTTCATCTATAAA+AGG 0.284074 7_4:+57361963 None:intergenic
AGAGAGGGAACTATAGTTTC+AGG 0.285584 7_4:-57361061 Msa1165460:CDS
TGTAGTCATTGGTGTCTTCC+AGG 0.301304 7_4:-57359231 Msa1165460:CDS
CAAGAATCTCTAGCATAAAT+AGG 0.310027 7_4:+57361987 None:intergenic
TTGTGGGTGATTCCATTAAT+AGG 0.313259 7_4:-57361175 Msa1165460:CDS
TGGAGTTTATAAGAGGAAAA+AGG 0.315433 7_4:-57361205 Msa1165460:CDS
TGGATCCTGAAACATTCTTT+TGG 0.320732 7_4:+57362213 None:intergenic
ACTATAGTTCCCTCTCTCTT+TGG 0.323759 7_4:+57361067 None:intergenic
GTCAATGAATGAACAGTTAA+AGG 0.328689 7_4:+57362296 None:intergenic
GTGATTTAACAAAAGGGTAT+TGG 0.335445 7_4:-57362028 Msa1165460:CDS
TCTGCAACAGGGGAGGTAAT+TGG 0.336289 7_4:-57359464 Msa1165460:intron
TTGTCAGAATTTAGGATAGA+TGG 0.339589 7_4:-57359303 Msa1165460:CDS
GTTCATGCACGATTTGATAA+TGG 0.348937 7_4:+57362551 None:intergenic
TGATTTAACAAAAGGGTATT+GGG 0.360468 7_4:-57362027 Msa1165460:CDS
CTTGGAAGGTCACAATCTTT+GGG 0.364337 7_4:+57361888 None:intergenic
CTGAACTTCGAAAGAAAACT+TGG 0.373534 7_4:+57359797 None:intergenic
CTATGATGACTTGGGCTTCA+TGG 0.375370 7_4:-57359849 Msa1165460:CDS
AAAGAGTGTGATTTAACAAA+AGG 0.376080 7_4:-57362035 Msa1165460:CDS
CGTGCCTCATACACTCTCTT+TGG 0.387282 7_4:+57361104 None:intergenic
CAGTTACAGAATAAATGAAT+AGG 0.392929 7_4:+57359134 None:intergenic
AACAACTCATTCCATACATC+TGG 0.402637 7_4:+57359204 None:intergenic
AGATTTACAGAGACAGTGTT+TGG 0.414712 7_4:+57362323 None:intergenic
GTATTTAAGGTTTCATTAAG+AGG 0.418975 7_4:+57359408 None:intergenic
CGAATTGATGCGATTGATCA+TGG 0.420809 7_4:-57360852 Msa1165460:CDS
GAGAAGTGCTAACCCAGCTT+TGG 0.426335 7_4:+57360761 None:intergenic
TGAAGGTGTAGTGGTTGATT+TGG 0.426959 7_4:+57362346 None:intergenic
ATGGCCACCCATCCATTTAT+GGG 0.428235 7_4:-57359284 Msa1165460:CDS
GAATTCAAGATTGTAGTCAT+TGG 0.430062 7_4:-57359242 Msa1165460:CDS
AAAATGTTGGAGTTTATAAG+AGG 0.432567 7_4:-57361212 Msa1165460:CDS
TTGTGAGGGGAATGGAAGAT+TGG 0.439163 7_4:-57361940 Msa1165460:CDS
TCTATGATTATATTCTTCTC+AGG 0.450722 7_4:+57359378 None:intergenic
TTCCAGGGGTTCCAGATGTA+TGG 0.454598 7_4:-57359215 Msa1165460:CDS
ATCGCATCAATTCGCAAAGT+TGG 0.456158 7_4:+57360861 None:intergenic
GAAAGATGAAAGGAAGAAGA+TGG 0.459359 7_4:+57362382 None:intergenic
AGGGGAGGTAATTGGAATTC+AGG 0.464877 7_4:-57359456 Msa1165460:CDS
GTAGTCATTGGTGTCTTCCA+GGG 0.468368 7_4:-57359230 Msa1165460:CDS
TTCCATACATCTGGAACCCC+TGG 0.474632 7_4:+57359213 None:intergenic
AGGAAAATTACCAAAGAGAG+AGG 0.476594 7_4:-57361077 Msa1165460:CDS
AGTTACAGAATAAATGAATA+GGG 0.477691 7_4:+57359135 None:intergenic
TTTCGAAAGCTATGATGACT+TGG 0.480355 7_4:-57359858 Msa1165460:CDS
TATGATGACTTGGGCTTCAT+GGG 0.480835 7_4:-57359848 Msa1165460:CDS
AGCTGTAGAAACATTTAGCC+GGG 0.486758 7_4:+57359882 None:intergenic
AGACGGTTATCTATTAAAGA+TGG 0.489310 7_4:+57362245 None:intergenic
TCACATCACAAAACCAAAGC+TGG 0.490317 7_4:-57360774 Msa1165460:CDS
TTGATCATGGTTCGTCAAGA+TGG 0.494455 7_4:-57360839 Msa1165460:CDS
TTCGAAAGCTATGATGACTT+GGG 0.498467 7_4:-57359857 Msa1165460:CDS
AAGAGTGTGATTTAACAAAA+GGG 0.500174 7_4:-57362034 Msa1165460:CDS
GATTTGATAATGGAAGAATA+AGG 0.500781 7_4:+57362561 None:intergenic
GTTTGCTACAAACAAGTCAA+TGG 0.501800 7_4:+57362497 None:intergenic
ACTACAATCTTGAATTCTTG+AGG 0.506067 7_4:+57359248 None:intergenic
ATTCCATTAATAGGAACCAA+TGG 0.514445 7_4:-57361166 Msa1165460:CDS
TGCACAACATTGATTCCCAT+TGG 0.516029 7_4:+57361150 None:intergenic
CCAAAGATTGTGACCTTCCA+AGG 0.518341 7_4:-57361887 Msa1165460:intron
TGGATAGAAACTTTACTAAG+TGG 0.522870 7_4:-57361920 Msa1165460:CDS
CATGAAAGCAAAGCAAGAGT+AGG 0.524542 7_4:-57360897 Msa1165460:CDS
AGGATTTATTACTATCAAGA+AGG 0.525446 7_4:-57359919 Msa1165460:CDS
AGATCCAAAGAGAGTGTATG+AGG 0.528363 7_4:-57361108 Msa1165460:CDS
AAGCTGTAGAAACATTTAGC+CGG 0.530807 7_4:+57359881 None:intergenic
TTCCATTAATAGGAACCAAT+GGG 0.535430 7_4:-57361165 Msa1165460:CDS
GCTATAGAAAACAACCATGT+TGG 0.538015 7_4:-57362182 Msa1165460:CDS
TTCACTTACAAAATAGATGA+GGG 0.543904 7_4:-57359176 Msa1165460:exon
TTCTCCCATAAATGGATGGG+TGG 0.544120 7_4:+57359280 None:intergenic
ATGAAAGCAAAGCAAGAGTA+GGG 0.551438 7_4:-57360896 Msa1165460:CDS
TAGTCATTGGTGTCTTCCAG+GGG 0.555746 7_4:-57359229 Msa1165460:CDS
GAAACTTTACTAAGTGGAGA+TGG 0.558108 7_4:-57361914 Msa1165460:CDS
ACAGAGACAGTGTTTGGTGA+AGG 0.563414 7_4:+57362329 None:intergenic
GTGAAGAGTAAAAGTCTAGT+GGG 0.564116 7_4:+57362422 None:intergenic
GGTTTCATTAAGAGGATGAG+TGG 0.565715 7_4:+57359416 None:intergenic
TTTCACTTACAAAATAGATG+AGG 0.566771 7_4:-57359177 Msa1165460:exon
AGTGTTTGGTGAAGGTGTAG+TGG 0.573224 7_4:+57362337 None:intergenic
GTTATATTCAACCATGTCAC+GGG 0.574652 7_4:+57359330 None:intergenic
TGTGAAGAGTAAAAGTCTAG+TGG 0.574760 7_4:+57362421 None:intergenic
GAAGAATAAGGAAGTTGCAG+AGG 0.577578 7_4:+57362573 None:intergenic
GAAACAAACCTGAAATGAGA+TGG 0.579203 7_4:+57359772 None:intergenic
GCCAGATAGTGAAAGATGAA+AGG 0.582837 7_4:+57362372 None:intergenic
CACATCACAAAACCAAAGCT+GGG 0.583781 7_4:-57360773 Msa1165460:intron
AAGGAACTCTAGTTCATCCC+CGG 0.588297 7_4:-57359900 Msa1165460:CDS
TGAACTTCGAAAGAAAACTT+GGG 0.590332 7_4:+57359798 None:intergenic
GATGACTTGGGCTTCATGGG+TGG 0.595229 7_4:-57359845 Msa1165460:CDS
TTGAGAGAGACTACCTTGGA+AGG 0.601243 7_4:+57361874 None:intergenic
GAGTGTATGAGGCACGTGGA+AGG 0.601700 7_4:-57361097 Msa1165460:CDS
AGATGAAAACTCCCGTGACA+TGG 0.604222 7_4:-57359341 Msa1165460:CDS
AGTTATATTCAACCATGTCA+CGG 0.606976 7_4:+57359329 None:intergenic
CAGTTGAAGTAGCACCAACA+TGG 0.608096 7_4:+57362168 None:intergenic
CATGGTTCGTCAAGATGGAG+AGG 0.632218 7_4:-57360834 Msa1165460:CDS
GGAAAATTACCAAAGAGAGA+GGG 0.638676 7_4:-57361076 Msa1165460:CDS
AATGCATGGTAATAGAACAA+AGG 0.639849 7_4:-57362132 Msa1165460:CDS
GCTGTAGAAACATTTAGCCG+GGG 0.684407 7_4:+57359883 None:intergenic
AAGAGAGTGTATGAGGCACG+TGG 0.685399 7_4:-57361101 Msa1165460:CDS
GGAGGTAATTGGAATTCAGG+AGG 0.688041 7_4:-57359453 Msa1165460:CDS
TTCAGGAGGACATTGTACAG+AGG 0.733974 7_4:-57359439 Msa1165460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTCAATATTTTTTTTT+TGG - chr7_4:57359806-57359825 Msa1165460:CDS 10.0%
!!! TAAAGTTTTGATTTTTAAGA+AGG - chr7_4:57359582-57359601 Msa1165460:intron 15.0%
!!! GAACAAATATCAAATATTTT+GGG + chr7_4:57360681-57360700 None:intergenic 15.0%
!!! AGAACAAATATCAAATATTT+TGG + chr7_4:57360682-57360701 None:intergenic 15.0%
!!! ATTTTAAGTATTCAACTTTA+GGG + chr7_4:57361174-57361193 None:intergenic 15.0%
!! TTTGTCAATTTATCAAATTT+AGG - chr7_4:57361323-57361342 Msa1165460:intron 15.0%
!! TTGTCAATTTATCAAATTTA+GGG - chr7_4:57361324-57361343 Msa1165460:intron 15.0%
!!! AAAGGTATTATTCTATATAT+TGG - chr7_4:57361431-57361450 Msa1165460:intron 15.0%
!!! AAGGTATTATTCTATATATT+GGG - chr7_4:57361432-57361451 Msa1165460:intron 15.0%
!!! CAAAAGACATACAATTATTT+TGG - chr7_4:57360150-57360169 Msa1165460:intron 20.0%
!!! GCAAAGTTAATTTTATTCTT+TGG - chr7_4:57360392-57360411 Msa1165460:intron 20.0%
!! AATGTATAATTGTATATGAC+TGG - chr7_4:57360654-57360673 Msa1165460:intron 20.0%
!!! TTAAAATACTAGAGCATTTA+AGG + chr7_4:57360974-57360993 None:intergenic 20.0%
!! CATCTATAAGAAATCATATT+CGG + chr7_4:57361053-57361072 None:intergenic 20.0%
!!! CATTTTAAGTATTCAACTTT+AGG + chr7_4:57361175-57361194 None:intergenic 20.0%
!! GTTGAATACTTAAAATGAAA+CGG - chr7_4:57361178-57361197 Msa1165460:CDS 20.0%
!! TTGAATACTTAAAATGAAAC+GGG - chr7_4:57361179-57361198 Msa1165460:CDS 20.0%
!!! ATGAAGTTTTAATCTAATAG+AGG - chr7_4:57361384-57361403 Msa1165460:intron 20.0%
!!! TGAAGTTTTAATCTAATAGA+GGG - chr7_4:57361385-57361404 Msa1165460:intron 20.0%
!! AGGTATTATTCTATATATTG+GGG - chr7_4:57361433-57361452 Msa1165460:intron 20.0%
!! ATAAATGTTAAACAAAAGCT+TGG + chr7_4:57361573-57361592 None:intergenic 20.0%
!!! ACATGTTAGTTTTTTTTAGT+AGG + chr7_4:57361710-57361729 None:intergenic 20.0%
!! TGAAAAAAGTTGTCTATATT+TGG - chr7_4:57362122-57362141 Msa1165460:CDS 20.0%
!! AGTTACAGAATAAATGAATA+GGG + chr7_4:57362528-57362547 None:intergenic 20.0%
!!! GATTTGATAATGGAAGAATA+AGG + chr7_4:57359102-57359121 None:intergenic 25.0%
!!! AGAGTTTTTTTGTAGCATTA+TGG + chr7_4:57359134-57359153 None:intergenic 25.0%
!!! CTTTCATTTTTCATCATCAA+TGG - chr7_4:57359189-57359208 Msa1165460:CDS 25.0%
!! TTTTTGTAGAGTGAAGTTTT+GGG + chr7_4:57359392-57359411 None:intergenic 25.0%
!!! TTTTTTGTAGAGTGAAGTTT+TGG + chr7_4:57359393-57359412 None:intergenic 25.0%
!! GTTAATTTTACTTCAATGCA+TGG - chr7_4:57359514-57359533 Msa1165460:intron 25.0%
!!! TTTGATTTTTAAGAAGGTTG+AGG - chr7_4:57359588-57359607 Msa1165460:intron 25.0%
!! AAAGAGTGTGATTTAACAAA+AGG - chr7_4:57359625-57359644 Msa1165460:intron 25.0%
!! AAGAGTGTGATTTAACAAAA+GGG - chr7_4:57359626-57359645 Msa1165460:intron 25.0%
!!! TGATTTAACAAAAGGGTATT+GGG - chr7_4:57359633-57359652 Msa1165460:intron 25.0%
! TCAAAACCTTCATCTATAAA+AGG + chr7_4:57359700-57359719 None:intergenic 25.0%
! ATAAGTTGTTAATCCAAACA+AGG + chr7_4:57359884-57359903 None:intergenic 25.0%
!!! TGTTTTAAGTTGTTTTCGTA+AGG - chr7_4:57360023-57360042 Msa1165460:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG + chr7_4:57360052-57360071 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr7_4:57360053-57360072 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATA+AGG - chr7_4:57360088-57360107 Msa1165460:intron 25.0%
!! GTCTTTTGTCAATAATTTCA+TGG + chr7_4:57360138-57360157 None:intergenic 25.0%
! ATGTATTGTGTTAGTCAATT+TGG - chr7_4:57360221-57360240 Msa1165460:intron 25.0%
! ATTATTGACAAGACATACTT+AGG - chr7_4:57360252-57360271 Msa1165460:intron 25.0%
! TTATTGACAAGACATACTTA+GGG - chr7_4:57360253-57360272 Msa1165460:intron 25.0%
! CAAAATCATTGTTTACTCTT+AGG - chr7_4:57360341-57360360 Msa1165460:intron 25.0%
!!! GGATATTATTTTTCTGTCAT+AGG - chr7_4:57360413-57360432 Msa1165460:intron 25.0%
! AAAATGTTGGAGTTTATAAG+AGG - chr7_4:57360448-57360467 Msa1165460:intron 25.0%
!!! GTGTTGAACTTTATTTTAAG+AGG - chr7_4:57361082-57361101 Msa1165460:CDS 25.0%
!! CATTCATAAGTAGTTTTTCA+AGG + chr7_4:57361206-57361225 None:intergenic 25.0%
! TTAGACACATGTTATTCTAT+AGG + chr7_4:57361272-57361291 None:intergenic 25.0%
! ATTATTCTATATATTGGGGT+TGG - chr7_4:57361437-57361456 Msa1165460:intron 25.0%
! TTATTCTATATATTGGGGTT+GGG - chr7_4:57361438-57361457 Msa1165460:intron 25.0%
!!! GTTAATTTTGAAAAATGAGC+TGG - chr7_4:57361534-57361553 Msa1165460:intron 25.0%
! AGGATTTATTACTATCAAGA+AGG - chr7_4:57361741-57361760 Msa1165460:intron 25.0%
!! GTCAAAGCATTTCAAATAAA+TGG - chr7_4:57362008-57362027 Msa1165460:CDS 25.0%
!! GTATTTAAGGTTTCATTAAG+AGG + chr7_4:57362255-57362274 None:intergenic 25.0%
! TATATTCTTCTCAGGATAAA+TGG + chr7_4:57362277-57362296 None:intergenic 25.0%
! TCTATGATTATATTCTTCTC+AGG + chr7_4:57362285-57362304 None:intergenic 25.0%
!! TAACTAGTTTGTCAGAATTT+AGG - chr7_4:57362349-57362368 Msa1165460:CDS 25.0%
! TTTCACTTACAAAATAGATG+AGG - chr7_4:57362483-57362502 Msa1165460:five_prime_UTR 25.0%
! TTCACTTACAAAATAGATGA+GGG - chr7_4:57362484-57362503 Msa1165460:five_prime_UTR 25.0%
! CAGTTACAGAATAAATGAAT+AGG + chr7_4:57362529-57362548 None:intergenic 25.0%
GTCAATGAATGAACAGTTAA+AGG + chr7_4:57359367-57359386 None:intergenic 30.0%
AGACGGTTATCTATTAAAGA+TGG + chr7_4:57359418-57359437 None:intergenic 30.0%
! GTTTTCTATAGCTTCAGATT+TGG + chr7_4:57359470-57359489 None:intergenic 30.0%
AATGCATGGTAATAGAACAA+AGG - chr7_4:57359528-57359547 Msa1165460:intron 30.0%
! GTGATTTAACAAAAGGGTAT+TGG - chr7_4:57359632-57359651 Msa1165460:intron 30.0%
CAAGAATCTCTAGCATAAAT+AGG + chr7_4:57359676-57359695 None:intergenic 30.0%
! TCTTGTCCTTTTATAGATGA+AGG - chr7_4:57359691-57359710 Msa1165460:intron 30.0%
TGGATAGAAACTTTACTAAG+TGG - chr7_4:57359740-57359759 Msa1165460:intron 30.0%
TTGCAATTGTAGTTATGCTT+AGG - chr7_4:57359858-57359877 Msa1165460:CDS 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG - chr7_4:57359961-57359980 Msa1165460:intron 30.0%
CAACGAAATACATCCTTATT+TGG + chr7_4:57360104-57360123 None:intergenic 30.0%
CAAATAAGGATGTATTTCGT+TGG - chr7_4:57360102-57360121 Msa1165460:intron 30.0%
ATGTATTTCGTTGGTCAATT+TGG - chr7_4:57360111-57360130 Msa1165460:intron 30.0%
GTTCAATGCAACAAAAATGT+TGG - chr7_4:57360435-57360454 Msa1165460:intron 30.0%
TGGAGTTTATAAGAGGAAAA+AGG - chr7_4:57360455-57360474 Msa1165460:intron 30.0%
ATTCCATTAATAGGAACCAA+TGG - chr7_4:57360494-57360513 Msa1165460:intron 30.0%
TTCCATTAATAGGAACCAAT+GGG - chr7_4:57360495-57360514 Msa1165460:intron 30.0%
TCTGGTAATTATTCAGAACT+TGG - chr7_4:57360624-57360643 Msa1165460:intron 30.0%
ACAAATCGACAAAAAGTTCA+CGG + chr7_4:57360947-57360966 None:intergenic 30.0%
TGTAGAGTTAAGTTCAAGAA+AGG - chr7_4:57361017-57361036 Msa1165460:intron 30.0%
GTACTTGAAATTGTAAGTTG+CGG + chr7_4:57361300-57361319 None:intergenic 30.0%
!! TGATATTGTAAGGTGTTGTT+AGG + chr7_4:57361355-57361374 None:intergenic 30.0%
AACAACACCTTACAATATCA+AGG - chr7_4:57361355-57361374 Msa1165460:intron 30.0%
TTCTAGTCCTTGATATTGTA+AGG + chr7_4:57361365-57361384 None:intergenic 30.0%
! CTTTTTCTGCAAGATACTTA+AGG + chr7_4:57361411-57361430 None:intergenic 30.0%
AGTATCTTGCAGAAAAAGAA+AGG - chr7_4:57361413-57361432 Msa1165460:intron 30.0%
TATTCTATATATTGGGGTTG+GGG - chr7_4:57361439-57361458 Msa1165460:intron 30.0%
AAAAAATACCCAGAGAAAGT+TGG - chr7_4:57361497-57361516 Msa1165460:intron 30.0%
TGAACTTCGAAAGAAAACTT+GGG + chr7_4:57361865-57361884 None:intergenic 30.0%
! ATCCACTATCCAATAGTTTT+AGG - chr7_4:57361915-57361934 Msa1165460:CDS 30.0%
!!! ATTTTGGAGCCTAAAACTAT+TGG + chr7_4:57361927-57361946 None:intergenic 30.0%
! ATAACAAAACCGTTGGATTT+TGG + chr7_4:57361943-57361962 None:intergenic 30.0%
!!! AAATCCAACGGTTTTGTTAT+TGG - chr7_4:57361943-57361962 Msa1165460:CDS 30.0%
TATTCCAATAACAAAACCGT+TGG + chr7_4:57361950-57361969 None:intergenic 30.0%
!!! TTTTTTGACAACAATCCAAG+TGG - chr7_4:57361986-57362005 Msa1165460:CDS 30.0%
! AGATGGTTAATGGATATATC+AGG + chr7_4:57362050-57362069 None:intergenic 30.0%
CTCAGGATAAATGGTATTTA+AGG + chr7_4:57362268-57362287 None:intergenic 30.0%
AGTTATATTCAACCATGTCA+CGG + chr7_4:57362334-57362353 None:intergenic 30.0%
! TTGTCAGAATTTAGGATAGA+TGG - chr7_4:57362357-57362376 Msa1165460:CDS 30.0%
! TTTTTCTCCCATAAATGGAT+GGG + chr7_4:57362386-57362405 None:intergenic 30.0%
! TTGTGTTTTTCTCCCATAAA+TGG + chr7_4:57362391-57362410 None:intergenic 30.0%
ACTACAATCTTGAATTCTTG+AGG + chr7_4:57362415-57362434 None:intergenic 30.0%
GAATTCAAGATTGTAGTCAT+TGG - chr7_4:57362418-57362437 Msa1165460:CDS 30.0%
! CATTCATTTTCATGAACTAG+TGG + chr7_4:57362572-57362591 None:intergenic 30.0%
GTTCATGCACGATTTGATAA+TGG + chr7_4:57359112-57359131 None:intergenic 35.0%
! GTTTGCTACAAACAAGTCAA+TGG + chr7_4:57359166-57359185 None:intergenic 35.0%
GTGAAGAGTAAAAGTCTAGT+GGG + chr7_4:57359241-57359260 None:intergenic 35.0%
TGTGAAGAGTAAAAGTCTAG+TGG + chr7_4:57359242-57359261 None:intergenic 35.0%
GAAAGATGAAAGGAAGAAGA+TGG + chr7_4:57359281-57359300 None:intergenic 35.0%
TCCTTTCATCTTTCACTATC+TGG - chr7_4:57359287-57359306 Msa1165460:CDS 35.0%
AGATTTACAGAGACAGTGTT+TGG + chr7_4:57359340-57359359 None:intergenic 35.0%
!!! TCTTTTGGCTTCTAGAAAGA+CGG + chr7_4:57359435-57359454 None:intergenic 35.0%
AGAAGCCAAAAGAATGTTTC+AGG - chr7_4:57359442-57359461 Msa1165460:CDS 35.0%
! TGGATCCTGAAACATTCTTT+TGG + chr7_4:57359450-57359469 None:intergenic 35.0%
GCTATAGAAAACAACCATGT+TGG - chr7_4:57359478-57359497 Msa1165460:intron 35.0%
!!! AGATGAAGGTTTTGATTGTG+AGG - chr7_4:57359705-57359724 Msa1165460:intron 35.0%
!!! GATGAAGGTTTTGATTGTGA+GGG - chr7_4:57359706-57359725 Msa1165460:intron 35.0%
!!! ATGAAGGTTTTGATTGTGAG+GGG - chr7_4:57359707-57359726 Msa1165460:intron 35.0%
GAAACTTTACTAAGTGGAGA+TGG - chr7_4:57359746-57359765 Msa1165460:intron 35.0%
TCCAAGAAGAACTATAGTGA+CGG - chr7_4:57360298-57360317 Msa1165460:intron 35.0%
!!! AGGAAAAAGGCTAGTTTTTG+TGG - chr7_4:57360468-57360487 Msa1165460:intron 35.0%
!!! GGAAAAAGGCTAGTTTTTGT+GGG - chr7_4:57360469-57360488 Msa1165460:intron 35.0%
TTGTGGGTGATTCCATTAAT+AGG - chr7_4:57360485-57360504 Msa1165460:intron 35.0%
!! TTCCCATTGGTTCCTATTAA+TGG + chr7_4:57360500-57360519 None:intergenic 35.0%
AGGAAAATTACCAAAGAGAG+AGG - chr7_4:57360583-57360602 Msa1165460:intron 35.0%
GGAAAATTACCAAAGAGAGA+GGG - chr7_4:57360584-57360603 Msa1165460:intron 35.0%
!! GAACTATAGTTTCAGGTTTC+TGG - chr7_4:57360606-57360625 Msa1165460:intron 35.0%
TGTTCTTTCTGCAACTTTGT+AGG - chr7_4:57360696-57360715 Msa1165460:intron 35.0%
ATGAAAGCAAAGCAAGAGTA+GGG - chr7_4:57360764-57360783 Msa1165460:intron 35.0%
AATCAAACTTCGTATCCTGT+GGG + chr7_4:57361687-57361706 None:intergenic 35.0%
CTAACATGTGATCGTATAAC+AGG - chr7_4:57361721-57361740 Msa1165460:intron 35.0%
AAGCTGTAGAAACATTTAGC+CGG + chr7_4:57361782-57361801 None:intergenic 35.0%
TTTCGAAAGCTATGATGACT+TGG - chr7_4:57361802-57361821 Msa1165460:intron 35.0%
TTCGAAAGCTATGATGACTT+GGG - chr7_4:57361803-57361822 Msa1165460:intron 35.0%
CTGAACTTCGAAAGAAAACT+TGG + chr7_4:57361866-57361885 None:intergenic 35.0%
GAAACAAACCTGAAATGAGA+TGG + chr7_4:57361891-57361910 None:intergenic 35.0%
AGCCTAAAACTATTGGATAG+TGG + chr7_4:57361920-57361939 None:intergenic 35.0%
! TTTTAGGCTCCAAAATCCAA+CGG - chr7_4:57361931-57361950 Msa1165460:CDS 35.0%
! TTTGAAATGCTTTGACCACT+TGG + chr7_4:57362004-57362023 None:intergenic 35.0%
TCCATTAACCATCTACTGAA+CGG - chr7_4:57362056-57362075 Msa1165460:CDS 35.0%
GATTAATTCCGTTCAGTAGA+TGG + chr7_4:57362067-57362086 None:intergenic 35.0%
!!! TTTTTTCACGACAATCCAAG+TGG + chr7_4:57362110-57362129 None:intergenic 35.0%
! ATCAGAGTCGCTAACTATTT+TGG + chr7_4:57362172-57362191 None:intergenic 35.0%
GTTATATTCAACCATGTCAC+GGG + chr7_4:57362333-57362352 None:intergenic 35.0%
! GTTTTTCTCCCATAAATGGA+TGG + chr7_4:57362387-57362406 None:intergenic 35.0%
AACAACTCATTCCATACATC+TGG + chr7_4:57362459-57362478 None:intergenic 35.0%
GAAGAATAAGGAAGTTGCAG+AGG + chr7_4:57359090-57359109 None:intergenic 40.0%
GCCAGATAGTGAAAGATGAA+AGG + chr7_4:57359291-57359310 None:intergenic 40.0%
! TGAAGGTGTAGTGGTTGATT+TGG + chr7_4:57359317-57359336 None:intergenic 40.0%
!!! TTGTAGAGTGAAGTTTTGGG+TGG + chr7_4:57359389-57359408 None:intergenic 40.0%
CTTGGAAGGTCACAATCTTT+GGG + chr7_4:57359775-57359794 None:intergenic 40.0%
GAATTTGAGAGAGACTACCT+TGG + chr7_4:57359793-57359812 None:intergenic 40.0%
!! AGTTATGCTTAGGCCTTGTT+TGG - chr7_4:57359868-57359887 Msa1165460:CDS 40.0%
ACCGTCACTATAGTTCTTCT+TGG + chr7_4:57360302-57360321 None:intergenic 40.0%
GGAGTTGCAAAAGTGAAGTT+AGG - chr7_4:57360362-57360381 Msa1165460:intron 40.0%
!! TGCACAACATTGATTCCCAT+TGG + chr7_4:57360513-57360532 None:intergenic 40.0%
! AGATCCAAAGAGAGTGTATG+AGG - chr7_4:57360552-57360571 Msa1165460:intron 40.0%
ACTATAGTTCCCTCTCTCTT+TGG + chr7_4:57360596-57360615 None:intergenic 40.0%
AGAGAGGGAACTATAGTTTC+AGG - chr7_4:57360599-57360618 Msa1165460:intron 40.0%
CATGAAAGCAAAGCAAGAGT+AGG - chr7_4:57360763-57360782 Msa1165460:intron 40.0%
ATCGCATCAATTCGCAAAGT+TGG + chr7_4:57360802-57360821 None:intergenic 40.0%
CGAATTGATGCGATTGATCA+TGG - chr7_4:57360808-57360827 Msa1165460:CDS 40.0%
TTGATCATGGTTCGTCAAGA+TGG - chr7_4:57360821-57360840 Msa1165460:CDS 40.0%
! ATGGAGAGGAGCTGATATTT+TGG - chr7_4:57360840-57360859 Msa1165460:CDS 40.0%
! TGGTTTTCAACACAGCACAT+TGG - chr7_4:57360860-57360879 Msa1165460:CDS 40.0%
! TTTTCAACACAGCACATTGG+TGG - chr7_4:57360863-57360882 Msa1165460:CDS 40.0%
TCACATCACAAAACCAAAGC+TGG - chr7_4:57360886-57360905 Msa1165460:CDS 40.0%
CACATCACAAAACCAAAGCT+GGG - chr7_4:57360887-57360906 Msa1165460:CDS 40.0%
! ACGTTTGAGGTTAAGACTTG+AGG + chr7_4:57361109-57361128 None:intergenic 40.0%
! GTAGTCCAGAAGTTGCTTTA+TGG - chr7_4:57361127-57361146 Msa1165460:CDS 40.0%
TGCTACCATAAAGCAACTTC+TGG + chr7_4:57361135-57361154 None:intergenic 40.0%
TACTCTTCTCAACTAGCATG+TGG - chr7_4:57361611-57361630 Msa1165460:intron 40.0%
GAATCAAACTTCGTATCCTG+TGG + chr7_4:57361688-57361707 None:intergenic 40.0%
AGCTGTAGAAACATTTAGCC+GGG + chr7_4:57361781-57361800 None:intergenic 40.0%
! TATGATGACTTGGGCTTCAT+GGG - chr7_4:57361812-57361831 Msa1165460:intron 40.0%
TCCGTTCAGTAGATGGTTAA+TGG + chr7_4:57362060-57362079 None:intergenic 40.0%
CTTAAACCACGTTAACCACT+TGG - chr7_4:57362092-57362111 Msa1165460:CDS 40.0%
ACTCTGATACATTCTGCAAC+AGG - chr7_4:57362184-57362203 Msa1165460:CDS 40.0%
CTCTGATACATTCTGCAACA+GGG - chr7_4:57362185-57362204 Msa1165460:CDS 40.0%
TCTGATACATTCTGCAACAG+GGG - chr7_4:57362186-57362205 Msa1165460:CDS 40.0%
GGTTTCATTAAGAGGATGAG+TGG + chr7_4:57362247-57362266 None:intergenic 40.0%
! AGTGTTTGGTGAAGGTGTAG+TGG + chr7_4:57359326-57359345 None:intergenic 45.0%
! ACAGAGACAGTGTTTGGTGA+AGG + chr7_4:57359334-57359353 None:intergenic 45.0%
CAGTTGAAGTAGCACCAACA+TGG + chr7_4:57359495-57359514 None:intergenic 45.0%
!!! GGTTTTGATTGTGAGGGGAA+TGG - chr7_4:57359712-57359731 Msa1165460:intron 45.0%
TTGTGAGGGGAATGGAAGAT+TGG - chr7_4:57359720-57359739 Msa1165460:intron 45.0%
CCTTGGAAGGTCACAATCTT+TGG + chr7_4:57359776-57359795 None:intergenic 45.0%
CCAAAGATTGTGACCTTCCA+AGG - chr7_4:57359773-57359792 Msa1165460:intron 45.0%
TTGAGAGAGACTACCTTGGA+AGG + chr7_4:57359789-57359808 None:intergenic 45.0%
CAACTTCTGGACTACGTTTG+AGG + chr7_4:57361122-57361141 None:intergenic 45.0%
AGCACATGCCAACTTTCTCT+GGG + chr7_4:57361508-57361527 None:intergenic 45.0%
! AAGGAACTCTAGTTCATCCC+CGG - chr7_4:57361760-57361779 Msa1165460:intron 45.0%
GCTGTAGAAACATTTAGCCG+GGG + chr7_4:57361780-57361799 None:intergenic 45.0%
! CTATGATGACTTGGGCTTCA+TGG - chr7_4:57361811-57361830 Msa1165460:intron 45.0%
GTTCAGCACCATCTCATTTC+AGG - chr7_4:57361880-57361899 Msa1165460:intron 45.0%
GACAATCCAAGTGGTTAACG+TGG + chr7_4:57362101-57362120 None:intergenic 45.0%
AGGGGAGGTAATTGGAATTC+AGG - chr7_4:57362204-57362223 Msa1165460:CDS 45.0%
GGAGGTAATTGGAATTCAGG+AGG - chr7_4:57362207-57362226 Msa1165460:CDS 45.0%
TTCAGGAGGACATTGTACAG+AGG - chr7_4:57362221-57362240 Msa1165460:CDS 45.0%
AGATGAAAACTCCCGTGACA+TGG - chr7_4:57362319-57362338 Msa1165460:CDS 45.0%
ATGGCCACCCATCCATTTAT+GGG - chr7_4:57362376-57362395 Msa1165460:CDS 45.0%
TTCTCCCATAAATGGATGGG+TGG + chr7_4:57362383-57362402 None:intergenic 45.0%
! TGTAGTCATTGGTGTCTTCC+AGG - chr7_4:57362429-57362448 Msa1165460:CDS 45.0%
! GTAGTCATTGGTGTCTTCCA+GGG - chr7_4:57362430-57362449 Msa1165460:CDS 45.0%
! TAGTCATTGGTGTCTTCCAG+GGG - chr7_4:57362431-57362450 Msa1165460:CDS 45.0%
CGTGCCTCATACACTCTCTT+TGG + chr7_4:57360559-57360578 None:intergenic 50.0%
! AAGAGAGTGTATGAGGCACG+TGG - chr7_4:57360559-57360578 Msa1165460:intron 50.0%
CATGGTTCGTCAAGATGGAG+AGG - chr7_4:57360826-57360845 Msa1165460:CDS 50.0%
!! GAGAAGTGCTAACCCAGCTT+TGG + chr7_4:57360902-57360921 None:intergenic 50.0%
CAGCACATGCCAACTTTCTC+TGG + chr7_4:57361509-57361528 None:intergenic 50.0%
ACTAGCATGTGGTTGACCAC+TGG - chr7_4:57361622-57361641 Msa1165460:intron 50.0%
ACCACTGGATTTAGCGCAAG+TGG - chr7_4:57361637-57361656 Msa1165460:intron 50.0%
ACCACTTGCGCTAAATCCAG+TGG + chr7_4:57361641-57361660 None:intergenic 50.0%
AGTGTGTGTAAGTGTCCCAC+AGG - chr7_4:57361669-57361688 Msa1165460:intron 50.0%
GATACATTCTGCAACAGGGG+AGG - chr7_4:57362189-57362208 Msa1165460:CDS 50.0%
TCTGCAACAGGGGAGGTAAT+TGG - chr7_4:57362196-57362215 Msa1165460:CDS 50.0%
GATGGCCACCCATCCATTTA+TGG - chr7_4:57362375-57362394 Msa1165460:CDS 50.0%
TTCCAGGGGTTCCAGATGTA+TGG - chr7_4:57362445-57362464 Msa1165460:CDS 50.0%
! TTCCATACATCTGGAACCCC+TGG + chr7_4:57362450-57362469 None:intergenic 50.0%
GAGTGTATGAGGCACGTGGA+AGG - chr7_4:57360563-57360582 Msa1165460:intron 55.0%
! GATGACTTGGGCTTCATGGG+TGG - chr7_4:57361815-57361834 Msa1165460:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57359080 57362602 57359080 ID=Msa1165460;Name=Msa1165460
chr7_4 mRNA 57359080 57362602 57359080 ID=Msa1165460-mRNA-1;Parent=Msa1165460;Name=Msa1165460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=128|1|1|1|1|1|5|99|475
chr7_4 exon 57359080 57359476 57359080 ID=Msa1165460-mRNA-1:exon:17322;Parent=Msa1165460-mRNA-1
chr7_4 exon 57359781 57359939 57359781 ID=Msa1165460-mRNA-1:exon:17321;Parent=Msa1165460-mRNA-1
chr7_4 exon 57360774 57360964 57360774 ID=Msa1165460-mRNA-1:exon:17320;Parent=Msa1165460-mRNA-1
chr7_4 exon 57361055 57361247 57361055 ID=Msa1165460-mRNA-1:exon:17319;Parent=Msa1165460-mRNA-1
chr7_4 exon 57361888 57362602 57361888 ID=Msa1165460-mRNA-1:exon:17318;Parent=Msa1165460-mRNA-1
chr7_4 five_prime_UTR 57362475 57362602 57362475 ID=Msa1165460-mRNA-1:five_prime_utr;Parent=Msa1165460-mRNA-1
chr7_4 CDS 57361888 57362474 57361888 ID=Msa1165460-mRNA-1:cds;Parent=Msa1165460-mRNA-1
chr7_4 CDS 57361055 57361247 57361055 ID=Msa1165460-mRNA-1:cds;Parent=Msa1165460-mRNA-1
chr7_4 CDS 57360774 57360964 57360774 ID=Msa1165460-mRNA-1:cds;Parent=Msa1165460-mRNA-1
chr7_4 CDS 57359781 57359939 57359781 ID=Msa1165460-mRNA-1:cds;Parent=Msa1165460-mRNA-1
chr7_4 CDS 57359179 57359476 57359179 ID=Msa1165460-mRNA-1:cds;Parent=Msa1165460-mRNA-1
chr7_4 three_prime_UTR 57359080 57359178 57359080 ID=Msa1165460-mRNA-1:three_prime_utr;Parent=Msa1165460-mRNA-1
Gene Sequence

>Msa1165460

ATGGAGAGACAAAGAAGTTTCTCTTTCAAACCCACTAGACTTTTACTCTTCACATTCACACTCTTTTCTTCCATCTTCTTCCTTTCATCTTTCACTATCTGGCTCACCAAATCAACCACTACACCTTCACCAAACACTGTCTCTGTAAATCTTCAACCTTTAACTGTTCATTCATTGACCACCCAAAACTTCACTCTACAAAAAATTCCATCTTTAATAGATAACCGTCTTTCTAGAAGCCAAAAGAATGTTTCAGGATCCAAATCTGAAGCTATAGAAAACAACCATGTTGGTGCTACTTCAACTGTTAATTTTACTTCAATGCATGGTAATAGAACAAAGGTTGAAGTGAGTGCTTTAGTGAGTAATAAGAGTAAAGTTTTGATTTTTAAGAAGGTTGAGGTGAAGAAGATAGTAAAAGAGTGTGATTTAACAAAAGGGTATTGGGTTTTTGATGAAAGTTATCCTATTTATGCTAGAGATTCTTGTCCTTTTATAGATGAAGGTTTTGATTGTGAGGGGAATGGAAGATTGGATAGAAACTTTACTAAGTGGAGATGGCAACCCAAAGATTGTGACCTTCCAAGGTTCAATGCAACAAAAATGTTGGAGTTTATAAGAGGAAAAAGGCTAGTTTTTGTGGGTGATTCCATTAATAGGAACCAATGGGAATCAATGTTGTGCATGTTATTGAGTGCTGTTAAAGATCCAAAGAGAGTGTATGAGGCACGTGGAAGGAAAATTACCAAAGAGAGAGGGAACTATAGTTTCAGGTTTCTGGACTATCAATGTACAGTTGAATACTATGTGAGTCATTTCTTAGTTCATGAAAGCAAAGCAAGAGTAGGGCAGAAACGAAGACCAACTTTGCGAATTGATGCGATTGATCATGGTTCGTCAAGATGGAGAGGAGCTGATATTTTGGTTTTCAACACAGCACATTGGTGGTCACATCACAAAACCAAAGCTGGGATTTATTACTATCAAGAAGGAACTCTAGTTCATCCCCGGCTAAATGTTTCTACAGCTTTTTCGAAAGCTATGATGACTTGGGCTTCATGGGTGGACAAACACATAAATTCTAAGAAAACCCAAGTTTTCTTTCGAAGTTCAGCACCATCTCATTTCAGGGGAGGTAATTGGAATTCAGGAGGACATTGTACAGAGGCCACTCATCCTCTTAATGAAACCTTAAATACCATTTATCCTGAGAAGAATATAATCATAGAAGAGACAGTAAAGCAGATGAAAACTCCCGTGACATGGTTGAATATAACTAGTTTGTCAGAATTTAGGATAGATGGCCACCCATCCATTTATGGGAGAAAAACACAATCCTCAAGAATTCAAGATTGTAGTCATTGGTGTCTTCCAGGGGTTCCAGATGTATGGAATGAGTTGTTATTTTTTCACTTACAAAATAGATGA
Protein sequence

>Msa1165460

MERQRSFSFKPTRLLLFTFTLFSSIFFLSSFTIWLTKSTTTPSPNTVSVNLQPLTVHSLTTQNFTLQKIPSLIDNRLSRSQKNVSGSKSEAIENNHVGATSTVNFTSMHGNRTKVEVSALVSNKSKVLIFKKVEVKKIVKECDLTKGYWVFDESYPIYARDSCPFIDEGFDCEGNGRLDRNFTKWRWQPKDCDLPRFNATKMLEFIRGKRLVFVGDSINRNQWESMLCMLLSAVKDPKRVYEARGRKITKERGNYSFRFLDYQCTVEYYVSHFLVHESKARVGQKRRPTLRIDAIDHGSSRWRGADILVFNTAHWWSHHKTKAGIYYYQEGTLVHPRLNVSTAFSKAMMTWASWVDKHINSKKTQVFFRSSAPSHFRGGNWNSGGHCTEATHPLNETLNTIYPEKNIIIEETVKQMKTPVTWLNITSLSEFRIDGHPSIYGRKTQSSRIQDCSHWCLPGVPDVWNELLFFHLQNR*