AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927400 MtrunA17_Chr8g0381591 89.655 58 6 0 5 62 435 492 3.36e-28 105
Msa0927400 MtrunA17_Chr6g0488171 65.957 47 13 1 46 89 65 111 8.01e-15 64.3
Msa0927400 MtrunA17_Chr6g0463041 65.957 47 13 1 46 89 203 249 1.10e-13 63.9
Msa0927400 MtrunA17_Chr6g0488341 65.957 47 13 1 46 89 194 240 1.61e-13 63.2
Msa0927400 MtrunA17_Chr6g0488081 46.667 75 31 2 18 89 247 315 6.11e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927400 AT1G67840.1 62.069 58 22 0 5 62 441 498 4.26e-16 72.0

Find 36 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTATTGTTGGTTATTT+TGG 0.092586 6_2:+71784266 Msa0927400:three_prime_UTR
CCAAAATAACCAACAATAAT+TGG 0.192533 6_2:-71784266 None:intergenic
TAGTCCACTTCATCTCTTGA+TGG 0.322453 6_2:-71783859 None:intergenic
AGCTACACATTGCATTCTTT+CGG 0.336658 6_2:+71783989 Msa0927400:three_prime_UTR
GTTGAAGCTTGCGAGAAGTT+AGG 0.362172 6_2:-71783921 None:intergenic
CTGTCAACCATCCTCACATT+AGG 0.392867 6_2:+71783890 Msa0927400:three_prime_UTR
CTGAAAGCCTGGCGCAGAGC+AGG 0.408438 6_2:-71783158 None:intergenic
TATTACATTCCAATTATTGT+TGG 0.408812 6_2:+71784257 Msa0927400:three_prime_UTR
AAATCAATGAGATCTGAATC+AGG 0.414416 6_2:-71784061 None:intergenic
AACCAAGTCTGCCAATACTT+TGG 0.432850 6_2:-71783048 None:intergenic
TGAATCAGGGTATTGTTTGT+TGG 0.433337 6_2:-71784047 None:intergenic
GGAGTAAAGCACCTTCAATA+AGG 0.437993 6_2:-71783184 None:intergenic
CGGATTGTAAATAGAGATAG+AGG 0.441475 6_2:+71784009 Msa0927400:three_prime_UTR
TTCCAAAGTATTGGCAGACT+TGG 0.442728 6_2:+71783046 Msa0927400:CDS
AGTTTCTATGTGGTTTAGAC+AGG 0.450454 6_2:+71784100 Msa0927400:three_prime_UTR
GCTTTCAGCAACCTTATTGA+AGG 0.452369 6_2:+71783173 Msa0927400:CDS
CAATAAGGTTGCTGAAAGCC+TGG 0.458375 6_2:-71783169 None:intergenic
GAATGTGCAAGTAGAGGTAA+TGG 0.463449 6_2:+71784165 Msa0927400:three_prime_UTR
CTCATTGATTTCATTAAAGT+AGG 0.464697 6_2:+71784073 Msa0927400:three_prime_UTR
GTTGTTCCATCTGCGGCCAT+CGG 0.476567 6_2:+71783796 Msa0927400:CDS
AGAAGAACCTGCTCTGCGCC+AGG 0.520287 6_2:+71783151 Msa0927400:CDS
GAATAGAATGAGAAGAAGCC+AGG 0.522386 6_2:-71783943 None:intergenic
GTGAAGCCGATGGCCGCAGA+TGG 0.524826 6_2:-71783802 None:intergenic
AGTACCATCAAGAGATGAAG+TGG 0.531658 6_2:+71783855 Msa0927400:CDS
AGTAGGAAATAGTTTCTATG+TGG 0.533904 6_2:+71784090 Msa0927400:three_prime_UTR
ACTTCTCGCAAGCTTCAACC+TGG 0.545161 6_2:+71783925 Msa0927400:three_prime_UTR
CATCTCTTGATGGTACTCTC+AGG 0.549092 6_2:-71783849 None:intergenic
GATAAACTGAATACAGTGAA+AGG 0.556971 6_2:-71784215 None:intergenic
AATTCAGGTTGTTCCATCTG+CGG 0.558051 6_2:+71783789 Msa0927400:intron
GCTTATTCCTAATGTGAGGA+TGG 0.565550 6_2:-71783897 None:intergenic
ATCATACACGGTGAAGCCGA+TGG 0.601799 6_2:-71783812 None:intergenic
GGAATGTAATAGAATTTCAG+TGG 0.605068 6_2:-71784245 None:intergenic
TCTTCTACAGCAGCTAGCAA+AGG 0.616929 6_2:-71783134 None:intergenic
AGGAGCTTATTCCTAATGTG+AGG 0.622163 6_2:-71783901 None:intergenic
AATCAATGAGATCTGAATCA+GGG 0.624411 6_2:-71784060 None:intergenic
TGATTTCATAGTATCATACA+CGG 0.704596 6_2:-71783824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATATTACCTTT+AGG + chr6_2:71782886-71782905 Msa0927400:intron 10.0%
!! AAAAAAAAATATTACCTTTA+GGG + chr6_2:71782887-71782906 Msa0927400:intron 10.0%
!!! TATTTAAAAACATTTTAACT+CGG - chr6_2:71783208-71783227 None:intergenic 10.0%
!! TAAAAAAAAATATTACCTTT+AGG + chr6_2:71782886-71782905 Msa0927400:intron 10.0%
!! AAAAAAAAATATTACCTTTA+GGG + chr6_2:71782887-71782906 Msa0927400:intron 10.0%
!!! TATTTAAAAACATTTTAACT+CGG - chr6_2:71783208-71783227 None:intergenic 10.0%
!!! ATATATTTTTGATGCAAAAT+TGG - chr6_2:71782867-71782886 None:intergenic 15.0%
!!! TTTTTTTTTTTTTCCAATTC+AGG + chr6_2:71783774-71783793 Msa0927400:intron 15.0%
!!! ATATATTTTTGATGCAAAAT+TGG - chr6_2:71782867-71782886 None:intergenic 15.0%
!!! TTTTTTTTTTTTTCCAATTC+AGG + chr6_2:71783774-71783793 Msa0927400:intron 15.0%
!!! TTGGACAAATTTTTTACATA+GGG - chr6_2:71782495-71782514 None:intergenic 20.0%
!!! ATTGGACAAATTTTTTACAT+AGG - chr6_2:71782496-71782515 None:intergenic 20.0%
!! GTTAATAAAATGCATAAATC+TGG + chr6_2:71782641-71782660 Msa0927400:intron 20.0%
!! TATTACATTCCAATTATTGT+TGG + chr6_2:71784257-71784276 Msa0927400:three_prime_UTR 20.0%
!!! TTGGACAAATTTTTTACATA+GGG - chr6_2:71782495-71782514 None:intergenic 20.0%
!!! ATTGGACAAATTTTTTACAT+AGG - chr6_2:71782496-71782515 None:intergenic 20.0%
!! GTTAATAAAATGCATAAATC+TGG + chr6_2:71782641-71782660 Msa0927400:intron 20.0%
!! TATTACATTCCAATTATTGT+TGG + chr6_2:71784257-71784276 Msa0927400:three_prime_UTR 20.0%
! ATACTTCAATCAAAATACGA+CGG + chr6_2:71782276-71782295 Msa0927400:intron 25.0%
! ATAAACAATTCAGCTAATGT+GGG - chr6_2:71782450-71782469 None:intergenic 25.0%
! AAAATTTGTCCAATATATGC+AGG + chr6_2:71782502-71782521 Msa0927400:intron 25.0%
! GAATATTATCCTGCATATAT+TGG - chr6_2:71782514-71782533 None:intergenic 25.0%
! GAATCAATCAAGAAAATGAA+TGG + chr6_2:71782548-71782567 Msa0927400:intron 25.0%
! GAAAATATCTCTTTCGATAA+TGG + chr6_2:71782774-71782793 Msa0927400:intron 25.0%
! AATTTATAGGACTTCAGAAT+TGG - chr6_2:71782844-71782863 None:intergenic 25.0%
! GATGCAAAATTGGAATTTAT+AGG - chr6_2:71782857-71782876 None:intergenic 25.0%
!!! TATGCTTTTTTATTGATGTC+AGG + chr6_2:71783010-71783029 Msa0927400:intron 25.0%
! ATTAACAGTTCCAAATATCA+AGG - chr6_2:71783273-71783292 None:intergenic 25.0%
! TAGAACTCTTATGTTAATCA+TGG + chr6_2:71783312-71783331 Msa0927400:intron 25.0%
!! TTTGAAATTCTACTTCTATG+AGG + chr6_2:71783375-71783394 Msa0927400:intron 25.0%
! AATATCCATCTATAATTTCC+AGG - chr6_2:71783548-71783567 None:intergenic 25.0%
! TGATTTCATAGTATCATACA+CGG - chr6_2:71783827-71783846 None:intergenic 25.0%
!!! CTCATTGATTTCATTAAAGT+AGG + chr6_2:71784073-71784092 Msa0927400:three_prime_UTR 25.0%
! CCAAAATAACCAACAATAAT+TGG - chr6_2:71784269-71784288 None:intergenic 25.0%
!!! CCAATTATTGTTGGTTATTT+TGG + chr6_2:71784266-71784285 Msa0927400:three_prime_UTR 25.0%
! ATACTTCAATCAAAATACGA+CGG + chr6_2:71782276-71782295 Msa0927400:intron 25.0%
! ATAAACAATTCAGCTAATGT+GGG - chr6_2:71782450-71782469 None:intergenic 25.0%
! AAAATTTGTCCAATATATGC+AGG + chr6_2:71782502-71782521 Msa0927400:intron 25.0%
! GAATATTATCCTGCATATAT+TGG - chr6_2:71782514-71782533 None:intergenic 25.0%
! GAATCAATCAAGAAAATGAA+TGG + chr6_2:71782548-71782567 Msa0927400:intron 25.0%
! GAAAATATCTCTTTCGATAA+TGG + chr6_2:71782774-71782793 Msa0927400:intron 25.0%
! AATTTATAGGACTTCAGAAT+TGG - chr6_2:71782844-71782863 None:intergenic 25.0%
! GATGCAAAATTGGAATTTAT+AGG - chr6_2:71782857-71782876 None:intergenic 25.0%
!!! TATGCTTTTTTATTGATGTC+AGG + chr6_2:71783010-71783029 Msa0927400:intron 25.0%
! ATTAACAGTTCCAAATATCA+AGG - chr6_2:71783273-71783292 None:intergenic 25.0%
! TAGAACTCTTATGTTAATCA+TGG + chr6_2:71783312-71783331 Msa0927400:intron 25.0%
!! TTTGAAATTCTACTTCTATG+AGG + chr6_2:71783375-71783394 Msa0927400:intron 25.0%
! AATATCCATCTATAATTTCC+AGG - chr6_2:71783548-71783567 None:intergenic 25.0%
! TGATTTCATAGTATCATACA+CGG - chr6_2:71783827-71783846 None:intergenic 25.0%
!!! CTCATTGATTTCATTAAAGT+AGG + chr6_2:71784073-71784092 Msa0927400:three_prime_UTR 25.0%
! CCAAAATAACCAACAATAAT+TGG - chr6_2:71784269-71784288 None:intergenic 25.0%
!!! CCAATTATTGTTGGTTATTT+TGG + chr6_2:71784266-71784285 Msa0927400:three_prime_UTR 25.0%
AATATGAAGAGCAGGAAATA+AGG - chr6_2:71782377-71782396 None:intergenic 30.0%
CATAAACAATTCAGCTAATG+TGG - chr6_2:71782451-71782470 None:intergenic 30.0%
CACATTAGCTGAATTGTTTA+TGG + chr6_2:71782449-71782468 Msa0927400:intron 30.0%
ACATATATACACATTGAAGG+TGG - chr6_2:71782812-71782831 None:intergenic 30.0%
GGAACATATATACACATTGA+AGG - chr6_2:71782815-71782834 None:intergenic 30.0%
TCAAAAGGAAAATACCCTAA+AGG - chr6_2:71782904-71782923 None:intergenic 30.0%
!! TTTAGGGTATTTTCCTTTTG+AGG + chr6_2:71782903-71782922 Msa0927400:intron 30.0%
! GTCTAAAACTAAACCTCAAA+AGG - chr6_2:71782919-71782938 None:intergenic 30.0%
! CTGCAATTTTTCCAAAGTAT+TGG + chr6_2:71783037-71783056 Msa0927400:CDS 30.0%
!!! ATGCTTTTTTTGTAATCCTC+AGG - chr6_2:71783418-71783437 None:intergenic 30.0%
AATCAATGAGATCTGAATCA+GGG - chr6_2:71784063-71784082 None:intergenic 30.0%
AAATCAATGAGATCTGAATC+AGG - chr6_2:71784064-71784083 None:intergenic 30.0%
AGTAGGAAATAGTTTCTATG+TGG + chr6_2:71784090-71784109 Msa0927400:three_prime_UTR 30.0%
GATAAACTGAATACAGTGAA+AGG - chr6_2:71784218-71784237 None:intergenic 30.0%
GGAATGTAATAGAATTTCAG+TGG - chr6_2:71784248-71784267 None:intergenic 30.0%
AATATGAAGAGCAGGAAATA+AGG - chr6_2:71782377-71782396 None:intergenic 30.0%
CATAAACAATTCAGCTAATG+TGG - chr6_2:71782451-71782470 None:intergenic 30.0%
CACATTAGCTGAATTGTTTA+TGG + chr6_2:71782449-71782468 Msa0927400:intron 30.0%
ACATATATACACATTGAAGG+TGG - chr6_2:71782812-71782831 None:intergenic 30.0%
GGAACATATATACACATTGA+AGG - chr6_2:71782815-71782834 None:intergenic 30.0%
TCAAAAGGAAAATACCCTAA+AGG - chr6_2:71782904-71782923 None:intergenic 30.0%
!! TTTAGGGTATTTTCCTTTTG+AGG + chr6_2:71782903-71782922 Msa0927400:intron 30.0%
! GTCTAAAACTAAACCTCAAA+AGG - chr6_2:71782919-71782938 None:intergenic 30.0%
! CTGCAATTTTTCCAAAGTAT+TGG + chr6_2:71783037-71783056 Msa0927400:CDS 30.0%
!!! ATGCTTTTTTTGTAATCCTC+AGG - chr6_2:71783418-71783437 None:intergenic 30.0%
AATCAATGAGATCTGAATCA+GGG - chr6_2:71784063-71784082 None:intergenic 30.0%
AAATCAATGAGATCTGAATC+AGG - chr6_2:71784064-71784083 None:intergenic 30.0%
AGTAGGAAATAGTTTCTATG+TGG + chr6_2:71784090-71784109 Msa0927400:three_prime_UTR 30.0%
GATAAACTGAATACAGTGAA+AGG - chr6_2:71784218-71784237 None:intergenic 30.0%
GGAATGTAATAGAATTTCAG+TGG - chr6_2:71784248-71784267 None:intergenic 30.0%
! CAATTCGTAACCCTGTATTT+TGG + chr6_2:71782119-71782138 Msa0927400:intron 35.0%
!!! GTCATTGGAGGTTTTGAATA+TGG + chr6_2:71782174-71782193 Msa0927400:intron 35.0%
! AGTCTTTTTATGAAGCTCTC+TGG + chr6_2:71782234-71782253 Msa0927400:intron 35.0%
GAGTTAGACACACTATACTA+AGG - chr6_2:71782409-71782428 None:intergenic 35.0%
TAACTCTATGCGTAAATACG+AGG + chr6_2:71782423-71782442 Msa0927400:intron 35.0%
GATAGTTCTCAACTGTTAGA+TGG + chr6_2:71782614-71782633 Msa0927400:intron 35.0%
ACAGTTCCAAATATCAAGGT+GGG - chr6_2:71783269-71783288 None:intergenic 35.0%
AACAGTTCCAAATATCAAGG+TGG - chr6_2:71783270-71783289 None:intergenic 35.0%
GAGTTCTACAATAACAACAC+AGG - chr6_2:71783300-71783319 None:intergenic 35.0%
! TTTTGTAATCCTCAGGTACA+TGG - chr6_2:71783411-71783430 None:intergenic 35.0%
!! GGATTACAAAAAAAGCATCG+TGG + chr6_2:71783420-71783439 Msa0927400:intron 35.0%
! TGCAGGTAACATGCTTTATT+TGG + chr6_2:71783519-71783538 Msa0927400:intron 35.0%
GATACAAAGTTAACCTGACT+AGG + chr6_2:71783577-71783596 Msa0927400:intron 35.0%
TCTCATAGTCCCTTTCAATT+CGG - chr6_2:71783630-71783649 None:intergenic 35.0%
! CTTTTGAGCAATCAAAACCA+TGG - chr6_2:71783654-71783673 None:intergenic 35.0%
!!! GTTTTGATTGCTCAAAAGCA+AGG + chr6_2:71783656-71783675 Msa0927400:intron 35.0%
AGCTACACATTGCATTCTTT+CGG + chr6_2:71783989-71784008 Msa0927400:three_prime_UTR 35.0%
CGGATTGTAAATAGAGATAG+AGG + chr6_2:71784009-71784028 Msa0927400:three_prime_UTR 35.0%
!! TGAATCAGGGTATTGTTTGT+TGG - chr6_2:71784050-71784069 None:intergenic 35.0%
AGTTTCTATGTGGTTTAGAC+AGG + chr6_2:71784100-71784119 Msa0927400:three_prime_UTR 35.0%
! CTTTTTGAATGTGCAAGTAG+AGG + chr6_2:71784159-71784178 Msa0927400:three_prime_UTR 35.0%
! CAATTCGTAACCCTGTATTT+TGG + chr6_2:71782119-71782138 Msa0927400:intron 35.0%
!!! GTCATTGGAGGTTTTGAATA+TGG + chr6_2:71782174-71782193 Msa0927400:intron 35.0%
! AGTCTTTTTATGAAGCTCTC+TGG + chr6_2:71782234-71782253 Msa0927400:intron 35.0%
GAGTTAGACACACTATACTA+AGG - chr6_2:71782409-71782428 None:intergenic 35.0%
TAACTCTATGCGTAAATACG+AGG + chr6_2:71782423-71782442 Msa0927400:intron 35.0%
GATAGTTCTCAACTGTTAGA+TGG + chr6_2:71782614-71782633 Msa0927400:intron 35.0%
ACAGTTCCAAATATCAAGGT+GGG - chr6_2:71783269-71783288 None:intergenic 35.0%
AACAGTTCCAAATATCAAGG+TGG - chr6_2:71783270-71783289 None:intergenic 35.0%
GAGTTCTACAATAACAACAC+AGG - chr6_2:71783300-71783319 None:intergenic 35.0%
! TTTTGTAATCCTCAGGTACA+TGG - chr6_2:71783411-71783430 None:intergenic 35.0%
!! GGATTACAAAAAAAGCATCG+TGG + chr6_2:71783420-71783439 Msa0927400:intron 35.0%
! TGCAGGTAACATGCTTTATT+TGG + chr6_2:71783519-71783538 Msa0927400:intron 35.0%
GATACAAAGTTAACCTGACT+AGG + chr6_2:71783577-71783596 Msa0927400:intron 35.0%
TCTCATAGTCCCTTTCAATT+CGG - chr6_2:71783630-71783649 None:intergenic 35.0%
! CTTTTGAGCAATCAAAACCA+TGG - chr6_2:71783654-71783673 None:intergenic 35.0%
!!! GTTTTGATTGCTCAAAAGCA+AGG + chr6_2:71783656-71783675 Msa0927400:intron 35.0%
AGCTACACATTGCATTCTTT+CGG + chr6_2:71783989-71784008 Msa0927400:three_prime_UTR 35.0%
CGGATTGTAAATAGAGATAG+AGG + chr6_2:71784009-71784028 Msa0927400:three_prime_UTR 35.0%
!! TGAATCAGGGTATTGTTTGT+TGG - chr6_2:71784050-71784069 None:intergenic 35.0%
AGTTTCTATGTGGTTTAGAC+AGG + chr6_2:71784100-71784119 Msa0927400:three_prime_UTR 35.0%
! CTTTTTGAATGTGCAAGTAG+AGG + chr6_2:71784159-71784178 Msa0927400:three_prime_UTR 35.0%
ATGCATAGCGCCAAAATACA+GGG - chr6_2:71782132-71782151 None:intergenic 40.0%
!! TTTTATGAAGCTCTCTGGAG+CGG + chr6_2:71782239-71782258 Msa0927400:intron 40.0%
AATCAAAATACGACGGCTCA+TGG + chr6_2:71782283-71782302 Msa0927400:intron 40.0%
TTCCTGCTCTTCATATTGAC+TGG + chr6_2:71782380-71782399 Msa0927400:intron 40.0%
AACCAGTCAATATGAAGAGC+AGG - chr6_2:71782385-71782404 None:intergenic 40.0%
! GCAGTAACACTAAGAGTATG+TGG - chr6_2:71782671-71782690 None:intergenic 40.0%
TACCTGATTCCATGTCATAG+TGG - chr6_2:71782734-71782753 None:intergenic 40.0%
ACTATGACATGGAATCAGGT+AGG + chr6_2:71782733-71782752 Msa0927400:intron 40.0%
!! TTCCAAAGTATTGGCAGACT+TGG + chr6_2:71783046-71783065 Msa0927400:CDS 40.0%
AACCAAGTCTGCCAATACTT+TGG - chr6_2:71783051-71783070 None:intergenic 40.0%
!! CGTTTTTGATTCTGAGCAAG+AGG - chr6_2:71783086-71783105 None:intergenic 40.0%
GCTTTCAGCAACCTTATTGA+AGG + chr6_2:71783173-71783192 Msa0927400:CDS 40.0%
! GGAGTAAAGCACCTTCAATA+AGG - chr6_2:71783187-71783206 None:intergenic 40.0%
TAGCTTCCCACCTTGATATT+TGG + chr6_2:71783260-71783279 Msa0927400:intron 40.0%
! GGGAATATTCCAAAGAGTGT+CGG - chr6_2:71783346-71783365 None:intergenic 40.0%
!! CTTTGGAATATTCCCATACG+CGG + chr6_2:71783351-71783370 Msa0927400:intron 40.0%
! TTTGGAATATTCCCATACGC+GGG + chr6_2:71783352-71783371 Msa0927400:intron 40.0%
AGAATTTCAAACCCGCGTAT+GGG - chr6_2:71783366-71783385 None:intergenic 40.0%
TAGAATTTCAAACCCGCGTA+TGG - chr6_2:71783367-71783386 None:intergenic 40.0%
TTCAAGAGGATGTGAATGTC+TGG - chr6_2:71783483-71783502 None:intergenic 40.0%
!! ACATGCTTTATTTGGTCTCC+TGG + chr6_2:71783527-71783546 Msa0927400:intron 40.0%
GGTCTCCTGGAAATTATAGA+TGG + chr6_2:71783540-71783559 Msa0927400:intron 40.0%
TGACTAGGTTCAAAACCTTG+CGG + chr6_2:71783592-71783611 Msa0927400:intron 40.0%
TCTGAAGAAGCCGAATTGAA+AGG + chr6_2:71783617-71783636 Msa0927400:intron 40.0%
CTGAAGAAGCCGAATTGAAA+GGG + chr6_2:71783618-71783637 Msa0927400:intron 40.0%
GATACTCAGCCCTAAAAACA+GGG - chr6_2:71783690-71783709 None:intergenic 40.0%
TGATACTCAGCCCTAAAAAC+AGG - chr6_2:71783691-71783710 None:intergenic 40.0%
!!! TTTTAGGGCTGAGTATCAGT+TGG + chr6_2:71783693-71783712 Msa0927400:intron 40.0%
!! AATTCAGGTTGTTCCATCTG+CGG + chr6_2:71783789-71783808 Msa0927400:intron 40.0%
AGTACCATCAAGAGATGAAG+TGG + chr6_2:71783855-71783874 Msa0927400:CDS 40.0%
TAGTCCACTTCATCTCTTGA+TGG - chr6_2:71783862-71783881 None:intergenic 40.0%
GCTTATTCCTAATGTGAGGA+TGG - chr6_2:71783900-71783919 None:intergenic 40.0%
AGGAGCTTATTCCTAATGTG+AGG - chr6_2:71783904-71783923 None:intergenic 40.0%
GAATAGAATGAGAAGAAGCC+AGG - chr6_2:71783946-71783965 None:intergenic 40.0%
GAATGTGCAAGTAGAGGTAA+TGG + chr6_2:71784165-71784184 Msa0927400:three_prime_UTR 40.0%
ATGCATAGCGCCAAAATACA+GGG - chr6_2:71782132-71782151 None:intergenic 40.0%
!! TTTTATGAAGCTCTCTGGAG+CGG + chr6_2:71782239-71782258 Msa0927400:intron 40.0%
AATCAAAATACGACGGCTCA+TGG + chr6_2:71782283-71782302 Msa0927400:intron 40.0%
TTCCTGCTCTTCATATTGAC+TGG + chr6_2:71782380-71782399 Msa0927400:intron 40.0%
AACCAGTCAATATGAAGAGC+AGG - chr6_2:71782385-71782404 None:intergenic 40.0%
! GCAGTAACACTAAGAGTATG+TGG - chr6_2:71782671-71782690 None:intergenic 40.0%
TACCTGATTCCATGTCATAG+TGG - chr6_2:71782734-71782753 None:intergenic 40.0%
ACTATGACATGGAATCAGGT+AGG + chr6_2:71782733-71782752 Msa0927400:intron 40.0%
!! TTCCAAAGTATTGGCAGACT+TGG + chr6_2:71783046-71783065 Msa0927400:CDS 40.0%
AACCAAGTCTGCCAATACTT+TGG - chr6_2:71783051-71783070 None:intergenic 40.0%
!! CGTTTTTGATTCTGAGCAAG+AGG - chr6_2:71783086-71783105 None:intergenic 40.0%
GCTTTCAGCAACCTTATTGA+AGG + chr6_2:71783173-71783192 Msa0927400:CDS 40.0%
! GGAGTAAAGCACCTTCAATA+AGG - chr6_2:71783187-71783206 None:intergenic 40.0%
TAGCTTCCCACCTTGATATT+TGG + chr6_2:71783260-71783279 Msa0927400:intron 40.0%
! GGGAATATTCCAAAGAGTGT+CGG - chr6_2:71783346-71783365 None:intergenic 40.0%
!! CTTTGGAATATTCCCATACG+CGG + chr6_2:71783351-71783370 Msa0927400:intron 40.0%
! TTTGGAATATTCCCATACGC+GGG + chr6_2:71783352-71783371 Msa0927400:intron 40.0%
AGAATTTCAAACCCGCGTAT+GGG - chr6_2:71783366-71783385 None:intergenic 40.0%
TAGAATTTCAAACCCGCGTA+TGG - chr6_2:71783367-71783386 None:intergenic 40.0%
TTCAAGAGGATGTGAATGTC+TGG - chr6_2:71783483-71783502 None:intergenic 40.0%
!! ACATGCTTTATTTGGTCTCC+TGG + chr6_2:71783527-71783546 Msa0927400:intron 40.0%
GGTCTCCTGGAAATTATAGA+TGG + chr6_2:71783540-71783559 Msa0927400:intron 40.0%
TGACTAGGTTCAAAACCTTG+CGG + chr6_2:71783592-71783611 Msa0927400:intron 40.0%
TCTGAAGAAGCCGAATTGAA+AGG + chr6_2:71783617-71783636 Msa0927400:intron 40.0%
CTGAAGAAGCCGAATTGAAA+GGG + chr6_2:71783618-71783637 Msa0927400:intron 40.0%
GATACTCAGCCCTAAAAACA+GGG - chr6_2:71783690-71783709 None:intergenic 40.0%
TGATACTCAGCCCTAAAAAC+AGG - chr6_2:71783691-71783710 None:intergenic 40.0%
!!! TTTTAGGGCTGAGTATCAGT+TGG + chr6_2:71783693-71783712 Msa0927400:intron 40.0%
!! AATTCAGGTTGTTCCATCTG+CGG + chr6_2:71783789-71783808 Msa0927400:intron 40.0%
AGTACCATCAAGAGATGAAG+TGG + chr6_2:71783855-71783874 Msa0927400:CDS 40.0%
TAGTCCACTTCATCTCTTGA+TGG - chr6_2:71783862-71783881 None:intergenic 40.0%
GCTTATTCCTAATGTGAGGA+TGG - chr6_2:71783900-71783919 None:intergenic 40.0%
AGGAGCTTATTCCTAATGTG+AGG - chr6_2:71783904-71783923 None:intergenic 40.0%
GAATAGAATGAGAAGAAGCC+AGG - chr6_2:71783946-71783965 None:intergenic 40.0%
GAATGTGCAAGTAGAGGTAA+TGG + chr6_2:71784165-71784184 Msa0927400:three_prime_UTR 40.0%
CATGCATAGCGCCAAAATAC+AGG - chr6_2:71782133-71782152 None:intergenic 45.0%
TTGGCAGGTAATGTCATTGG+AGG + chr6_2:71782162-71782181 Msa0927400:intron 45.0%
TTACCGTCAAATCGCAACCT+TGG - chr6_2:71782330-71782349 None:intergenic 45.0%
! TACTCTTAGTGTTACTGCCC+AGG + chr6_2:71782673-71782692 Msa0927400:intron 45.0%
!! AAGGGGCATCTCTATATCCT+GGG - chr6_2:71782693-71782712 None:intergenic 45.0%
AGTGAGAGCTAAAGGTGGAA+GGG - chr6_2:71782711-71782730 None:intergenic 45.0%
! CATAGTGGAGTGAGAGCTAA+AGG - chr6_2:71782719-71782738 None:intergenic 45.0%
CTCCACTATGACATGGAATC+AGG + chr6_2:71782729-71782748 Msa0927400:intron 45.0%
GGACTTCAGAATTGGCAGAA+TGG - chr6_2:71782836-71782855 None:intergenic 45.0%
TCTTCTACAGCAGCTAGCAA+AGG - chr6_2:71783137-71783156 None:intergenic 45.0%
CAATAAGGTTGCTGAAAGCC+TGG - chr6_2:71783172-71783191 None:intergenic 45.0%
!!! GCAAGGTTTTGAACCTAGTC+AGG - chr6_2:71783593-71783612 None:intergenic 45.0%
GAAAGGGACTATGAGATCCA+TGG + chr6_2:71783634-71783653 Msa0927400:intron 45.0%
TGATTGCTCAAAAGCAAGGC+TGG + chr6_2:71783660-71783679 Msa0927400:intron 45.0%
!!! GCTGGAAGACCCTGTTTTTA+GGG + chr6_2:71783678-71783697 Msa0927400:intron 45.0%
GCAGATGGAACAACCTGAAT+TGG - chr6_2:71783790-71783809 None:intergenic 45.0%
! CATCTCTTGATGGTACTCTC+AGG - chr6_2:71783852-71783871 None:intergenic 45.0%
CTGTCAACCATCCTCACATT+AGG + chr6_2:71783890-71783909 Msa0927400:three_prime_UTR 45.0%
GTTGAAGCTTGCGAGAAGTT+AGG - chr6_2:71783924-71783943 None:intergenic 45.0%
CATGCATAGCGCCAAAATAC+AGG - chr6_2:71782133-71782152 None:intergenic 45.0%
TTGGCAGGTAATGTCATTGG+AGG + chr6_2:71782162-71782181 Msa0927400:intron 45.0%
TTACCGTCAAATCGCAACCT+TGG - chr6_2:71782330-71782349 None:intergenic 45.0%
! TACTCTTAGTGTTACTGCCC+AGG + chr6_2:71782673-71782692 Msa0927400:intron 45.0%
!! AAGGGGCATCTCTATATCCT+GGG - chr6_2:71782693-71782712 None:intergenic 45.0%
AGTGAGAGCTAAAGGTGGAA+GGG - chr6_2:71782711-71782730 None:intergenic 45.0%
! CATAGTGGAGTGAGAGCTAA+AGG - chr6_2:71782719-71782738 None:intergenic 45.0%
CTCCACTATGACATGGAATC+AGG + chr6_2:71782729-71782748 Msa0927400:intron 45.0%
GGACTTCAGAATTGGCAGAA+TGG - chr6_2:71782836-71782855 None:intergenic 45.0%
TCTTCTACAGCAGCTAGCAA+AGG - chr6_2:71783137-71783156 None:intergenic 45.0%
CAATAAGGTTGCTGAAAGCC+TGG - chr6_2:71783172-71783191 None:intergenic 45.0%
!!! GCAAGGTTTTGAACCTAGTC+AGG - chr6_2:71783593-71783612 None:intergenic 45.0%
GAAAGGGACTATGAGATCCA+TGG + chr6_2:71783634-71783653 Msa0927400:intron 45.0%
TGATTGCTCAAAAGCAAGGC+TGG + chr6_2:71783660-71783679 Msa0927400:intron 45.0%
!!! GCTGGAAGACCCTGTTTTTA+GGG + chr6_2:71783678-71783697 Msa0927400:intron 45.0%
GCAGATGGAACAACCTGAAT+TGG - chr6_2:71783790-71783809 None:intergenic 45.0%
! CATCTCTTGATGGTACTCTC+AGG - chr6_2:71783852-71783871 None:intergenic 45.0%
CTGTCAACCATCCTCACATT+AGG + chr6_2:71783890-71783909 Msa0927400:three_prime_UTR 45.0%
GTTGAAGCTTGCGAGAAGTT+AGG - chr6_2:71783924-71783943 None:intergenic 45.0%
TTGGCGCTATGCATGCTTGA+AGG + chr6_2:71782138-71782157 Msa0927400:intron 50.0%
TGGCGCTATGCATGCTTGAA+GGG + chr6_2:71782139-71782158 Msa0927400:intron 50.0%
GCTATGCATGCTTGAAGGGT+TGG + chr6_2:71782143-71782162 Msa0927400:intron 50.0%
! GGGTTGGCAGGTAATGTCAT+TGG + chr6_2:71782159-71782178 Msa0927400:intron 50.0%
CAAAATACGACGGCTCATGG+CGG + chr6_2:71782286-71782305 Msa0927400:intron 50.0%
GGCGGAAAATGTGGCTCTTA+CGG + chr6_2:71782304-71782323 Msa0927400:intron 50.0%
AAATGTGGCTCTTACGGCCA+AGG + chr6_2:71782310-71782329 Msa0927400:intron 50.0%
!! GAAGGGGCATCTCTATATCC+TGG - chr6_2:71782694-71782713 None:intergenic 50.0%
GTGAGAGCTAAAGGTGGAAG+GGG - chr6_2:71782710-71782729 None:intergenic 50.0%
GAGTGAGAGCTAAAGGTGGA+AGG - chr6_2:71782712-71782731 None:intergenic 50.0%
AGTGGAGTGAGAGCTAAAGG+TGG - chr6_2:71782716-71782735 None:intergenic 50.0%
GCTCTCACTCCACTATGACA+TGG + chr6_2:71782722-71782741 Msa0927400:intron 50.0%
! AATGAAGCGCCATGTACCTG+AGG + chr6_2:71783399-71783418 Msa0927400:intron 50.0%
ATCGTGGCGAAACTCACATG+TGG + chr6_2:71783436-71783455 Msa0927400:intron 50.0%
GAAACTCACATGTGGATCCG+TGG + chr6_2:71783444-71783463 Msa0927400:intron 50.0%
TGGATCCGTGGCAGGTTTAT+TGG + chr6_2:71783456-71783475 Msa0927400:intron 50.0%
GGATCCGTGGCAGGTTTATT+GGG + chr6_2:71783457-71783476 Msa0927400:intron 50.0%
CACATCCTCTTGAAGCTGTC+AGG + chr6_2:71783489-71783508 Msa0927400:intron 50.0%
ATCCTCTTGAAGCTGTCAGG+AGG + chr6_2:71783492-71783511 Msa0927400:intron 50.0%
!! GGCTGGAAGACCCTGTTTTT+AGG + chr6_2:71783677-71783696 Msa0927400:intron 50.0%
ATCATACACGGTGAAGCCGA+TGG - chr6_2:71783815-71783834 None:intergenic 50.0%
ACTTCTCGCAAGCTTCAACC+TGG + chr6_2:71783925-71783944 Msa0927400:three_prime_UTR 50.0%
TTGGCGCTATGCATGCTTGA+AGG + chr6_2:71782138-71782157 Msa0927400:intron 50.0%
TGGCGCTATGCATGCTTGAA+GGG + chr6_2:71782139-71782158 Msa0927400:intron 50.0%
GCTATGCATGCTTGAAGGGT+TGG + chr6_2:71782143-71782162 Msa0927400:intron 50.0%
! GGGTTGGCAGGTAATGTCAT+TGG + chr6_2:71782159-71782178 Msa0927400:intron 50.0%
CAAAATACGACGGCTCATGG+CGG + chr6_2:71782286-71782305 Msa0927400:intron 50.0%
GGCGGAAAATGTGGCTCTTA+CGG + chr6_2:71782304-71782323 Msa0927400:intron 50.0%
AAATGTGGCTCTTACGGCCA+AGG + chr6_2:71782310-71782329 Msa0927400:intron 50.0%
!! GAAGGGGCATCTCTATATCC+TGG - chr6_2:71782694-71782713 None:intergenic 50.0%
GTGAGAGCTAAAGGTGGAAG+GGG - chr6_2:71782710-71782729 None:intergenic 50.0%
GAGTGAGAGCTAAAGGTGGA+AGG - chr6_2:71782712-71782731 None:intergenic 50.0%
AGTGGAGTGAGAGCTAAAGG+TGG - chr6_2:71782716-71782735 None:intergenic 50.0%
GCTCTCACTCCACTATGACA+TGG + chr6_2:71782722-71782741 Msa0927400:intron 50.0%
! AATGAAGCGCCATGTACCTG+AGG + chr6_2:71783399-71783418 Msa0927400:intron 50.0%
ATCGTGGCGAAACTCACATG+TGG + chr6_2:71783436-71783455 Msa0927400:intron 50.0%
GAAACTCACATGTGGATCCG+TGG + chr6_2:71783444-71783463 Msa0927400:intron 50.0%
TGGATCCGTGGCAGGTTTAT+TGG + chr6_2:71783456-71783475 Msa0927400:intron 50.0%
GGATCCGTGGCAGGTTTATT+GGG + chr6_2:71783457-71783476 Msa0927400:intron 50.0%
CACATCCTCTTGAAGCTGTC+AGG + chr6_2:71783489-71783508 Msa0927400:intron 50.0%
ATCCTCTTGAAGCTGTCAGG+AGG + chr6_2:71783492-71783511 Msa0927400:intron 50.0%
!! GGCTGGAAGACCCTGTTTTT+AGG + chr6_2:71783677-71783696 Msa0927400:intron 50.0%
ATCATACACGGTGAAGCCGA+TGG - chr6_2:71783815-71783834 None:intergenic 50.0%
ACTTCTCGCAAGCTTCAACC+TGG + chr6_2:71783925-71783944 Msa0927400:three_prime_UTR 50.0%
! TGCATGCTTGAAGGGTTGGC+AGG + chr6_2:71782147-71782166 Msa0927400:intron 55.0%
! ACGGCTCATGGCGGAAAATG+TGG + chr6_2:71782295-71782314 Msa0927400:intron 55.0%
CGGCCAAGGTTGCGATTTGA+CGG + chr6_2:71782324-71782343 Msa0927400:intron 55.0%
!! TCCAAAGAGTGTCGGAGCTG+TGG - chr6_2:71783338-71783357 None:intergenic 55.0%
CTGGCCCAATAAACCTGCCA+CGG - chr6_2:71783464-71783483 None:intergenic 55.0%
TGCCTCCTGACAGCTTCAAG+AGG - chr6_2:71783497-71783516 None:intergenic 55.0%
AGCTGTCAGGAGGCAAATGC+AGG + chr6_2:71783502-71783521 Msa0927400:intron 55.0%
GTTGTTCCATCTGCGGCCAT+CGG + chr6_2:71783796-71783815 Msa0927400:CDS 55.0%
! TGCATGCTTGAAGGGTTGGC+AGG + chr6_2:71782147-71782166 Msa0927400:intron 55.0%
! ACGGCTCATGGCGGAAAATG+TGG + chr6_2:71782295-71782314 Msa0927400:intron 55.0%
CGGCCAAGGTTGCGATTTGA+CGG + chr6_2:71782324-71782343 Msa0927400:intron 55.0%
!! TCCAAAGAGTGTCGGAGCTG+TGG - chr6_2:71783338-71783357 None:intergenic 55.0%
CTGGCCCAATAAACCTGCCA+CGG - chr6_2:71783464-71783483 None:intergenic 55.0%
TGCCTCCTGACAGCTTCAAG+AGG - chr6_2:71783497-71783516 None:intergenic 55.0%
AGCTGTCAGGAGGCAAATGC+AGG + chr6_2:71783502-71783521 Msa0927400:intron 55.0%
GTTGTTCCATCTGCGGCCAT+CGG + chr6_2:71783796-71783815 Msa0927400:CDS 55.0%
AGAAGAACCTGCTCTGCGCC+AGG + chr6_2:71783151-71783170 Msa0927400:CDS 60.0%
GCCACAGCTCCGACACTCTT+TGG + chr6_2:71783334-71783353 Msa0927400:intron 60.0%
CTCACATGTGGATCCGTGGC+AGG + chr6_2:71783448-71783467 Msa0927400:intron 60.0%
CGGCTTCTTCAGATGCCGCA+AGG - chr6_2:71783610-71783629 None:intergenic 60.0%
AGAAGAACCTGCTCTGCGCC+AGG + chr6_2:71783151-71783170 Msa0927400:CDS 60.0%
GCCACAGCTCCGACACTCTT+TGG + chr6_2:71783334-71783353 Msa0927400:intron 60.0%
CTCACATGTGGATCCGTGGC+AGG + chr6_2:71783448-71783467 Msa0927400:intron 60.0%
CGGCTTCTTCAGATGCCGCA+AGG - chr6_2:71783610-71783629 None:intergenic 60.0%
CTGAAAGCCTGGCGCAGAGC+AGG - chr6_2:71783161-71783180 None:intergenic 65.0%
GTGAAGCCGATGGCCGCAGA+TGG - chr6_2:71783805-71783824 None:intergenic 65.0%
CTGAAAGCCTGGCGCAGAGC+AGG - chr6_2:71783161-71783180 None:intergenic 65.0%
GTGAAGCCGATGGCCGCAGA+TGG - chr6_2:71783805-71783824 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71782108 71784327 71782108 ID=Msa0927400;Name=Msa0927400
chr6_2 mRNA 71782108 71784327 71782108 ID=Msa0927400-mRNA-1;Parent=Msa0927400;Name=Msa0927400-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0.33|1|1|1|3|445|89
chr6_2 exon 71782108 71782113 71782108 ID=Msa0927400-mRNA-1:exon:11997;Parent=Msa0927400-mRNA-1
chr6_2 exon 71783032 71783208 71783032 ID=Msa0927400-mRNA-1:exon:11998;Parent=Msa0927400-mRNA-1
chr6_2 exon 71783796 71784327 71783796 ID=Msa0927400-mRNA-1:exon:11999;Parent=Msa0927400-mRNA-1
chr6_2 CDS 71782108 71782113 71782108 ID=Msa0927400-mRNA-1:cds;Parent=Msa0927400-mRNA-1
chr6_2 CDS 71783032 71783208 71783032 ID=Msa0927400-mRNA-1:cds;Parent=Msa0927400-mRNA-1
chr6_2 CDS 71783796 71783882 71783796 ID=Msa0927400-mRNA-1:cds;Parent=Msa0927400-mRNA-1
chr6_2 three_prime_UTR 71783883 71784327 71783883 ID=Msa0927400-mRNA-1:three_prime_utr;Parent=Msa0927400-mRNA-1
Gene Sequence

>Msa0927400

ATGGCGGAAGACTGCAATTTTTCCAAAGTATTGGCAGACTTGGTTGATACAATCAAACCTCTTGCTCAGAATCAAAAACGTGTAATAGAACATAGTCTGCTCTCATCACCTTTGCTAGCTGCTGTAGAAGAACCTGCTCTGCGCCAGGCTTTCAGCAACCTTATTGAAGGTGCTTTACTCCGAGTTGTTCCATCTGCGGCCATCGGCTTCACCGTGTATGATACTATGAAATCATGCCTGAGAGTACCATCAAGAGATGAAGTGGACTAA
Protein sequence

>Msa0927400

MAEDCNFSKVLADLVDTIKPLAQNQKRVIEHSLLSSPLLAAVEEPALRQAFSNLIEGALLRVVPSAAIGFTVYDTMKSCLRVPSRDEVD*